Pregenerated sensors for CLGN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000002190Ensembl transcript IDs: ENSMUST00000002259.13, ENSMUST00000109831.3
Found 85 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTAGGAGTTCCAAGTCAGCTTGAGCTACAGAGTAAACCCTTGTATTaGCAAACTATAAAAATAAAACTCGGTTGCTCAGACATTACCACT | + |
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Preference number: 1 (lower is better) Translates to: LGVPSQLELQSKPLY*QTIKIKLGCSDITT Trigger: AGTGGTAATGTCTGAGCAACCGAGTTTTATTTTTATAGTTTGTCAATACAAGGGTTTACTCTGTAGCTCAAGCTGACTTGGAACTCCTAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| 3UTR-3UTR CCA 90 bp | CGGCACATCCACAGCCAGGAGTTTGTAGTGATGTTTGCATGGCTCCTCACGCCTATCAACGTCAGTGCATaGCCACAGGGCAAGCACTCC | + |
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Preference number: 2 (lower is better) Translates to: RHIHSQEFVVMFAWLLTPINVSA*PQGKHS Trigger: GGAGTGCTTGCCCTGTGGCCATGCACTGACGTTGAT...AGGCGTGAGGAGCCATGCAAACATCACTACAAACTCCTGGCTGTGGATGTGCCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| 3UTR-3UTR GCA 90 bp | AAGGTAGTTTGTTTGGGCTCCCACTTCAGATGCAGCTCTGAGGGTGACCTTGTCCTTAGAAAGAGTTTGTaGAGATGCGCAGTCACTGTC | + |
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Preference number: 2 (lower is better) Translates to: KVVCLGSHFRCSSEGDLVLRKSL*RCAVTV Trigger: GACAGTGACTGCGCATCTGCACAAACTCTTTCTAAG...GACAAGGTCACCCTCAGAGCTGCATCTGAAGTGGGAGCCCAAACAAACTACCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| 3UTR CAA 90 bp | AGGGAAGTGTGGCTCGCTCACACACTCTTTATAGTGCTGACAGCATaGAACGATCATTCACGGACTCTTATCACCTTCAGCCTGTACAAC | + |
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Preference number: 2 (lower is better) Translates to: REVWLAHTLFIVLTA*NDHSRTLITFSLYN Trigger: GTTGTACAGGCTGAAGGTGATAAGAGTCCGTGAATGATCGTTCAATGCTGTCAGCACTATAAAGAGTGTGTGAGCGAGCCACACTTCCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| 3UTR-3UTR TCA 90 bp | TCAGTACTAAAGTCATCCTCTGGTCTTCAGGTGGACTTGAATGGCCTTTCAAAGGTAAGCCACTGGGCATaGAGTGGCTACAAGAGCTTG | + |
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Preference number: 2 (lower is better) Translates to: SVLKSSSGLQVDLNGLSKVSHWA*SGYKSL Trigger: CAAGCTCTTGTAGCCACTTCATGCCCAGTGGCTTAC...CTTTGAAAGGCCATTCAAGTCCACCTGAAGACCAGAGGATGACTTTAGTACTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| 3UTR-3UTR CCA 90 bp | GGACTCAGTACTAAAGTCATCCTCTGGTCTTCAGGTGGACTTGAATGGCCTTTCCCACTGGGCATGAAGTaGCTACAAGAGCTTGAAAAA | + |
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Preference number: 2 (lower is better) Translates to: GLSTKVILWSSGGLEWPFPLGMK*LQELEK Trigger: TTTTTCAAGCTCTTGTAGCCACTTCATGCCCAGTGG...GAAAGGCCATTCAAGTCCACCTGAAGACCAGAGGATGACTTTAGTACTGAGTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| 3UTR-3UTR GCA 90 bp | AAGGTAGTTTGTTTGGGCTCCCACTTCAGATGCAGCTCTGAGGGTGACCTTGTCGGCTCTCATGTAATGTaGCACTTTTCTTTTATTCTA | + |
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Preference number: 2 (lower is better) Translates to: KVVCLGSHFRCSSEGDLVGSHVM*HFSFIL Trigger: TAGAATAAAAGAAAAGTGGCACATTACATGAGAGCC...GACAAGGTCACCCTCAGAGCTGCATCTGAAGTGGGAGCCCAAACAAACTACCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| 3UTR-3UTR GCA 90 bp | GTCAAATGTCCATGCAGAGTCAATCTGCAGCCAAGAGTTAAAACAGCTTTAACAAAGAGTTTGTGCAGATaGGCAGTCACTGTCCTTCTG | + |
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Preference number: 2 (lower is better) Translates to: VKCPCRVNLQPRVKTALTKSLCR*AVTVLL Trigger: CAGAAGGACAGTGACTGCGCATCTGCACAAACTCTT...TGTTAAAGCTGTTTTAACTCTTGGCTGCAGATTGACTCTGCATGGACATTTGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| 3UTR-3UTR GCA 90 bp | GTCAAATGTCCATGCAGAGTCAATCTGCAGCCAAGAGTTAAAACAGCTTTAACAAGGATAAAACTAACCTaGTCCTTTCTGCAGATGAGA | + |
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Preference number: 2 (lower is better) Translates to: VKCPCRVNLQPRVKTALTRIKLT*SFLQMR Trigger: TCTCATCTGCAGAAAGGAGCAGGTTAGTTTTATCCT...TGTTAAAGCTGTTTTAACTCTTGGCTGCAGATTGACTCTGCATGGACATTTGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| 3UTR CCA 72 bp | GCCACAGGGCAAGCACTCCCTCCCCTTCTGCCAGTATaGAAGATGCAAACAACGCCATTAGCTCAGCTCAGC | + |
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Preference number: 3 (lower is better) Translates to: ATGQALPPLLPV*KMQTTPLAQLS Trigger: GCTGAGCTGAGCTAATGGCGTTGTTTGCATCTTCCATACTGGCAGAAGGGGAGGGAGTGCTTGCCCTGTGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| 3UTR GCA 72 bp | ACGGCACATCCACAGCCAGGAGTTTGTAGTGATGTTTaGATGGCTCCTCACGCCTGCTGTCCCAGTACTGAG | + |
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Preference number: 3 (lower is better) Translates to: TAHPQPGVCSDV*MAPHACCPSTE Trigger: CTCAGTACTGGGACAGCAGGCGTGAGGAGCCATGCAAACATCACTACAAACTCCTGGCTGTGGATGTGCCGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| 3UTR CCA 72 bp | TTACAAGTTCACCAGGAGTCTATCAACGTCAGTGCATaGCCACAGGGCAAGCACTCCCTCCCCTTCTGCCAG | + |
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Preference number: 3 (lower is better) Translates to: LQVHQESINVSA*PQGKHSLPFCQ Trigger: CTGGCAGAAGGGGAGGGAGTGCTTGCCCTGTGGCCATGCACTGACGTTGATAGACTCCTGGTGAACTTGTAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| 3UTR CCA 72 bp | CACATCCACAGCCAGGAGTTTGTAGTGATGTTTGCATaGCTCCTCACGCCTGCTGTCCCAGTACTGAGGGGT | + |
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Preference number: 3 (lower is better) Translates to: HIHSQEFVVMFA*LLTPAVPVLRG Trigger: ACCCCTCAGTACTGGGACAGCAGGCGTGAGGAGCCATGCAAACATCACTACAAACTCCTGGCTGTGGATGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| 3UTR-3UTR CAA 90 bp | CGGCACATCCACAGCCAGGAGTTTGTAGTGATGTTTGCATGGCTCCTCACGCCTGGTCTTCAGGTGGACTaGAATGGCCTTTCAAAGGGT | + |
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Preference number: 3 (lower is better) Translates to: RHIHSQEFVVMFAWLLTPGLQVD*NGLSKG Trigger: ACCCTTTGAAAGGCCATTCAAGTCCACCTGAAGACC...AGGCGTGAGGAGCCATGCAAACATCACTACAAACTCCTGGCTGTGGATGTGCCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| 3UTR GCA 72 bp | GGAGTTTGTAGTGATGTTTGCATGGCTCCTCACGCCTaGTGTCCCAGTACTGAGGGGTTGATAGAGGAGGAT | + |
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Preference number: 3 (lower is better) Translates to: GVCSDVCMAPHA*CPSTEGLIEED Trigger: ATCCTCCTCTATCAACCCCTCAGTACTGGGACAGCAGGCGTGAGGAGCCATGCAAACATCACTACAAACTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| 3UTR-3UTR CAA 90 bp | CGGCACATCCACAGCCAGGAGTTTGTAGTGATGTTTGCATGGCTCCTCACGCCTGAGTTCCAAGTCAGCTaGAGCTACAGAGTAAACCCT | + |
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Preference number: 3 (lower is better) Translates to: RHIHSQEFVVMFAWLLTPEFQVS*SYRVNP Trigger: AGGGTTTACTCTGTAGCTCAAGCTGACTTGGAACTC...AGGCGTGAGGAGCCATGCAAACATCACTACAAACTCCTGGCTGTGGATGTGCCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| 3UTR TCA 72 bp | TGTTTGCATGGCTCCTCACGCCTGCTGTCCCAGTACTaGGGGGTTGATAGAGGAGGATTGCATCAATCTAAG | + |
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Preference number: 3 (lower is better) Translates to: CLHGSSRLLSQY*GVDRGGLHQSK Trigger: CTTAGATTGATGCAATCCTCCTCTATCAACCCCTCAGTACTGGGACAGCAGGCGTGAGGAGCCATGCAAACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| 3UTR GCA 72 bp | GCTGATAAGGTAGTTTGTTTGGGCTCCCACTTCAGATaGAGCTCTGAGGGTGACCTTGTCAGCAGGAAAGCA | + |
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Preference number: 3 (lower is better) Translates to: ADKVVCLGSHFR*SSEGDLVSRKA Trigger: TGCTTTCCTGCTGACAAGGTCACCCTCAGAGCTGCATCTGAAGTGGGAGCCCAAACAAACTACCTTATCAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| 3UTR GCA 72 bp | TATAAAAATAAAACTCGGTTGCTCAGACATTACCACTaGAAGCTCCTGAGTTTAGTCAAATGTCCATGCAGA | + |
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Preference number: 3 (lower is better) Translates to: YKNKTRLLRHYH*KLLSLVKCPCR Trigger: TCTGCATGGACATTTGACTAAACTCAGGAGCTTGCAGTGGTAATGTCTGAGCAACCGAGTTTTATTTTTATA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR TCA 90 bp | TGTGTTACAAGTTCACCAGGAGTCTATCAACGTCAGTGCATGGCCACAGGGCAACCATCACCAGGTACATaGGCCAGAGCCAGGGGCGCT | + |
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Preference number: 4 (lower is better) Translates to: CVTSSPGVYQRQCMATGQPSPGT*ARARGA Trigger: AGCGCCCCTGGCTCTGGCTCATGTACCTGGTGATGG...TTGCCCTGTGGCCATGCACTGACGTTGATAGACTCCTGGTGAACTTGTAACACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR TCA 90 bp | AAGGTAGTTTGTTTGGGCTCCCACTTCAGATGCAGCTCTGAGGGTGACCTTGTCGGGTTGGGAATCTTCTaGGGACTCCAGAGTCCCTGG | + |
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Preference number: 4 (lower is better) Translates to: KVVCLGSHFRCSSEGDLVGLGIF*GLQSPW Trigger: CCAGGGACTCTGGAGTCCTCAGAAGATTCCCAACCC...GACAAGGTCACCCTCAGAGCTGCATCTGAAGTGGGAGCCCAAACAAACTACCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| 3UTR CAA 72 bp | ATGGCTCCTCACGCCTGCTGTCCCAGTACTGAGGGGTaGATAGAGGAGGATTGCATCAATCTAAGTGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: MAPHACCPSTEG*IEEDCINLSAA Trigger: GGCTGCACTTAGATTGATGCAATCCTCCTCTATCAACCCCTCAGTACTGGGACAGCAGGCGTGAGGAGCCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR GCA 90 bp | ACGGACTCTTATCACCTTCAGCCTGTACAACAGAGCAAACCTACAGCTCAGGATGGCCTTCTCCTCCTCTaGCTCTTGTTCCAGAGCGGC | + |
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Preference number: 4 (lower is better) Translates to: TDSYHLQPVQQSKPTAQDGLLLL*LLFQSG Trigger: GCCGCTCTGGAACAAGAGGCAGAGGAGGAGAAGGCC...ATCCTGAGCTGTAGGTTTGCTCTGTTGTACAGGCTGAAGGTGATAAGAGTCCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR CCA 90 bp | AAGGTAGTTTGTTTGGGCTCCCACTTCAGATGCAGCTCTGAGGGTGACCTTGTCGGCATCTCCAGATCCTaGGCTCTCATCAGCGTCCTT | + |
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Preference number: 4 (lower is better) Translates to: KVVCLGSHFRCSSEGDLVGISRS*ALISVL Trigger: AAGGACGCTGATGAGAGCCCAGGATCTGGAGATGCC...GACAAGGTCACCCTCAGAGCTGCATCTGAAGTGGGAGCCCAAACAAACTACCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR GCA 90 bp | ACGTCAGTGCATGGCCACAGGGCAAGCACTCCCTCCCCTTCTGCCAGTATGGAATCTGGAGGCTTGGCATaGTTTTCTTCAAAAACTCCA | + |
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Preference number: 4 (lower is better) Translates to: TSVHGHRASTPSPSASMESGGLA*FSSKTP Trigger: TGGAGTTTTTGAAGAAAAGCATGCCAAGCCTCCAGA...TTCCATACTGGCAGAAGGGGAGGGAGTGCTTGCCCTGTGGCCATGCACTGACGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR GCA 90 bp | ACGTCAGTGCATGGCCACAGGGCAAGCACTCCCTCCCCTTCTGCCAGTATGGAAAGAGCGGCCTTGCTTTaGAGTTTGCATAATTCAGTT | + |
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Preference number: 4 (lower is better) Translates to: TSVHGHRASTPSPSASMERAALL*SLHNSV Trigger: AACTGAATTATGCAAACTGCAAAGCAAGGCCGCTCT...TTCCATACTGGCAGAAGGGGAGGGAGTGCTTGCCCTGTGGCCATGCACTGACGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR CCA 90 bp | ACGTCAGTGCATGGCCACAGGGCAAGCACTCCCTCCCCTTCTGCCAGTATGGAACGACATCTGGAGGCTTaGCATGCTTTTCTTCAAAAA | + |
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Preference number: 4 (lower is better) Translates to: TSVHGHRASTPSPSASMERHLEA*HAFLQK Trigger: TTTTTGAAGAAAAGCATGCCAAGCCTCCAGATGTCG...TTCCATACTGGCAGAAGGGGAGGGAGTGCTTGCCCTGTGGCCATGCACTGACGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR TCA 90 bp | CGGCACATCCACAGCCAGGAGTTTGTAGTGATGTTTGCATGGCTCCTCACGCCTTTGCTCACTTCCTCTTaGCCTTCTAGAGTTTCTCTG | + |
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Preference number: 4 (lower is better) Translates to: RHIHSQEFVVMFAWLLTPLLTSS*PSRVSL Trigger: CAGAGAAACTCTAGAAGGTCAAGAGGAAGTGAGCAA...AGGCGTGAGGAGCCATGCAAACATCACTACAAACTCCTGGCTGTGGATGTGCCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR CCA 90 bp | ACGTCAGTGCATGGCCACAGGGCAAGCACTCCCTCCCCTTCTGCCAGTATGGAACTTGAGTCTTCTATTTaGGCAGGTTCATTTTCATCC | + |
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Preference number: 4 (lower is better) Translates to: TSVHGHRASTPSPSASMELESSI*AGSFSS Trigger: GGATGAAAATGAACCTGCCCAAATAGAAGACTCAAG...TTCCATACTGGCAGAAGGGGAGGGAGTGCTTGCCCTGTGGCCATGCACTGACGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR CCA 90 bp | ACGTCAGTGCATGGCCACAGGGCAAGCACTCCCTCCCCTTCTGCCAGTATGGAATTTCTTTACTTTCCTTaGCCAACAAAAGGAAGCAAC | + |
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Preference number: 4 (lower is better) Translates to: TSVHGHRASTPSPSASMEFLYFP*PTKGSN Trigger: GTTGCTTCCTTTTGTTGGCCAAGGAAAGTAAAGAAA...TTCCATACTGGCAGAAGGGGAGGGAGTGCTTGCCCTGTGGCCATGCACTGACGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR TCA 90 bp | AGTGTAACTCAAGCCAGGGAAGTGTGGCTCGCTCACACACTCTTTATAGTGCTGCGTCTGAATTTTCACTaGAGTCTTCCACCTCAACAC | + |
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Preference number: 4 (lower is better) Translates to: SVTQAREVWLAHTLFIVLRLNFH*SLPPQH Trigger: GTGTTGAGGTGGAAGACTTCAGTGAAAATTCAGACG...CAGCACTATAAAGAGTGTGTGAGCGAGCCACACTTCCCTGGCTTGAGTTACACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR TCA 90 bp | AGTGTAACTCAAGCCAGGGAAGTGTGGCTCGCTCACACACTCTTTATAGTGCTGAGGTTTAACAGCACTTaGGTCTTCTATTTGGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: SVTQAREVWLAHTLFIVLRFNST*VFYLGR Trigger: CCTGCCCAAATAGAAGACTCAAGTGCTGTTAAACCT...CAGCACTATAAAGAGTGTGTGAGCGAGCCACACTTCCCTGGCTTGAGTTACACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR TCA 90 bp | TCACGGACTCTTATCACCTTCAGCCTGTACAACAGAGCAAACCTACAGCTCAGGTCTCCACATCCAATCTaGCAGGCTGGATTAGGAATA | + |
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Preference number: 4 (lower is better) Translates to: SRTLITFSLYNRANLQLRSPHPI*QAGLGI Trigger: TATTCCTAATCCAGCCTGTCAGATTGGATGTGGAGA...CCTGAGCTGTAGGTTTGCTCTGTTGTACAGGCTGAAGGTGATAAGAGTCCGTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR CCA 90 bp | TCACGGACTCTTATCACCTTCAGCCTGTACAACAGAGCAAACCTACAGCTCAGGTTGGGTTATCGATCATaGGAGGTTTCCATTCTCCAC | + |
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Preference number: 4 (lower is better) Translates to: SRTLITFSLYNRANLQLRLGYRS*EVSILH Trigger: GTGGAGAATGGAAACCTCCCATGATCGATAACCCAA...CCTGAGCTGTAGGTTTGCTCTGTTGTACAGGCTGAAGGTGATAAGAGTCCGTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR TCA 90 bp | CAAGCCTATTATCTTGTAAACTATGCTTGCATATTTCCCGGTGATGGAGTGAGTCTAAGCCCAGCGCACTaGAAGAAGTCAGGAGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: QAYYLVNYACIFPGDGVSLSPAH*KKSGGR Trigger: CCTTCCTCCTGACTTCTTTCAGTGCGCTGGGCTTAG...ACTCACTCCATCACCGGGAAATATGCAAGCATAGTTTACAAGATAATAGGCTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR CCA 90 bp | TCAGTACTAAAGTCATCCTCTGGTCTTCAGGTGGACTTGAATGGCCTTTCAAAGTTCTTGCACATCTTCTaGCTTCTCTGGGGCCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: SVLKSSSGLQVDLNGLSKFLHIF*LLWGLL Trigger: GAGAAGGCCCCAGAGAAGCCAGAAGATGTGCAAGAA...CTTTGAAAGGCCATTCAAGTCCACCTGAAGACCAGAGGATGACTTTAGTACTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| 3UTR CAA 72 bp | TGGCTCGCTCACACACTCTTTATAGTGCTGACAGCATaGAACGATCATTCACGGACTCTTATCACCTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: WLAHTLFIVLTA*NDHSRTLITFS Trigger: GCTGAAGGTGATAAGAGTCCGTGAATGATCGTTCAATGCTGTCAGCACTATAAAGAGTGTGTGAGCGAGCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR TCA 90 bp | GGACTCAGTACTAAAGTCATCCTCTGGTCTTCAGGTGGACTTGAATGGCCTTTCCTTCATCTCATCCTCTaGTCCAGATTTACTCAGCTT | + |
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Preference number: 4 (lower is better) Translates to: GLSTKVILWSSGGLEWPFLHLIL*SRFTQL Trigger: AAGCTGAGTAAATCTGGATCAGAGGATGAGATGAAG...GAAAGGCCATTCAAGTCCACCTGAAGACCAGAGGATGACTTTAGTACTGAGTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR GCA 90 bp | AGTGTAACTCAAGCCAGGGAAGTGTGGCTCGCTCACACACTCTTTATAGTGCTGAGGCTCATTAGCATTTaGCACCATTATCTTCAGTTC | + |
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Preference number: 4 (lower is better) Translates to: SVTQAREVWLAHTLFIVLRLISI*HHYLQF Trigger: GAACTGAAGATAATGGTGGCAAATGCTAATGAGCCT...CAGCACTATAAAGAGTGTGTGAGCGAGCCACACTTCCCTGGCTTGAGTTACACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR CCA 90 bp | CAAGCCTATTATCTTGTAAACTATGCTTGCATATTTCCCGGTGATGGAGTGAGTGTCATCCCACTCCTCTaGCTTTTTATCACTGGGGTC | + |
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Preference number: 4 (lower is better) Translates to: QAYYLVNYACIFPGDGVSVIPLL*LFITGV Trigger: GACCCCAGTGATAAAAAGCCAGAGGAGTGGGATGAC...ACTCACTCCATCACCGGGAAATATGCAAGCATAGTTTACAAGATAATAGGCTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR CCA 90 bp | TCAGTACTAAAGTCATCCTCTGGTCTTCAGGTGGACTTGAATGGCCTTTCAAAGCAAAGTAATCTGGGTTaGGAATCTTCTGAGGACTCC | + |
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Preference number: 4 (lower is better) Translates to: SVLKSSSGLQVDLNGLSKQSNLG*ESSEDS Trigger: GGAGTCCTCAGAAGATTCCCAACCCAGATTACTTTG...CTTTGAAAGGCCATTCAAGTCCACCTGAAGACCAGAGGATGACTTTAGTACTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| 3UTR CAA 72 bp | TTTAAATACAGCAATACTGCTGATAAGGTAGTTTGTTaGGGCTCCCACTTCAGATGCAGCTCTGAGGGTGAC | + |
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Preference number: 4 (lower is better) Translates to: FKYSNTADKVVC*GSHFRCSSEGD Trigger: GTCACCCTCAGAGCTGCATCTGAAGTGGGAGCCCAAACAAACTACCTTATCAGCAGTATTGCTGTATTTAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR CCA 90 bp | GTCAAATGTCCATGCAGAGTCAATCTGCAGCCAAGAGTTAAAACAGCTTTAACAAGATGTCAGGAGTCATaGACCAAAGCTCTAAGCCCA | + |
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Preference number: 4 (lower is better) Translates to: VKCPCRVNLQPRVKTALTRCQES*TKALSP Trigger: TGGGCTTAGAGCTTTGGTCCATGACTCCTGACATCT...TGTTAAAGCTGTTTTAACTCTTGGCTGCAGATTGACTCTGCATGGACATTTGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR CCA 90 bp | GTCAAATGTCCATGCAGAGTCAATCTGCAGCCAAGAGTTAAAACAGCTTTAACATGGATTAGGAATATGTaGTGCCTCCCATTCTCCATC | + |
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Preference number: 4 (lower is better) Translates to: VKCPCRVNLQPRVKTALTWIRNM*CLPFSI Trigger: GATGGAGAATGGGAGGCACCACATATTCCTAATCCA...TGTTAAAGCTGTTTTAACTCTTGGCTGCAGATTGACTCTGCATGGACATTTGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR GCA 90 bp | CAAGCCTATTATCTTGTAAACTATGCTTGCATATTTCCCGGTGATGGAGTGAGTATTAGGAATATGTGGTaGCTCCCATTCTCCATCCAT | + |
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Preference number: 4 (lower is better) Translates to: QAYYLVNYACIFPGDGVSIRNMW*LPFSIH Trigger: ATGGATGGAGAATGGGAGGCACCACATATTCCTAAT...ACTCACTCCATCACCGGGAAATATGCAAGCATAGTTTACAAGATAATAGGCTTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR GCA 90 bp | CAAGCCTATTATCTTGTAAACTATGCTTGCATATTTCCCGGTGATGGAGTGAGTCAGATTTACTCAGCTTaGTCACTTCCTCTTGACCTT | + |
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Preference number: 4 (lower is better) Translates to: QAYYLVNYACIFPGDGVSQIYSA*SLPLDL Trigger: AAGGTCAAGAGGAAGTGAGCAAGCTGAGTAAATCTG...ACTCACTCCATCACCGGGAAATATGCAAGCATAGTTTACAAGATAATAGGCTTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR CCA 90 bp | CAAGCCTATTATCTTGTAAACTATGCTTGCATATTTCCCGGTGATGGAGTGAGTGATTCCTTTGTATTTTaGGTTATCGATCATGGGAGG | + |
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Preference number: 4 (lower is better) Translates to: QAYYLVNYACIFPGDGVSDSFVF*VIDHGR Trigger: CCTCCCATGATCGATAACCCAAAATACAAAGGAATC...ACTCACTCCATCACCGGGAAATATGCAAGCATAGTTTACAAGATAATAGGCTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR CCA 90 bp | CAAGCCTATTATCTTGTAAACTATGCTTGCATATTTCCCGGTGATGGAGTGAGTAGGATTATTGATCATTaGTGGTCTCCAGATTCCTTT | + |
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Preference number: 4 (lower is better) Translates to: QAYYLVNYACIFPGDGVSRIIDH*WSPDSF Trigger: AAAGGAATCTGGAGACCACCAATGATCAATAATCCT...ACTCACTCCATCACCGGGAAATATGCAAGCATAGTTTACAAGATAATAGGCTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| 3UTR CAA 72 bp | ACCCTTGTATTGACAAACTATAAAAATAAAACTCGGTaGCTCAGACATTACCACTGCAAGCTCCTGAGTTTA | + |
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Preference number: 4 (lower is better) Translates to: TLVLTNYKNKTR*LRHYHCKLLSL Trigger: TAAACTCAGGAGCTTGCAGTGGTAATGTCTGAGCAACCGAGTTTTATTTTTATAGTTTGTCAATACAAGGGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS GCA 90 bp | GCCGGCCATCACCAGGTACATGAGCCAGAGCCAGGGGCGCTCCTCTaGGGCTATCACCAGCTGTCGGAGTACACCAGGCTCATTAGCATT | + |
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Preference number: 5 (lower is better) Translates to: AGHHQVHEPEPGALL*GYHQLSEYTRLISI Trigger: AATGCTAATGAGCCTGGTGTACTCCGACAGCTGGTGATAGCCGCAGAGGAGCGCCCCTGGCTCTGGCTCATGTACCTGGTGATGGCCGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS-3UTR CAA 90 bp | ACGGACTCTTATCACCTTCAGCCTGTACAACAGAGCAAACCTACAGCTCAGGATCTCCTCCTCTGCCTCTaGTTCCAGAGCGGCCTTGCT | + |
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Preference number: 5 (lower is better) Translates to: TDSYHLQPVQQSKPTAQDLLLCL*FQSGLA Trigger: AGCAAGGCCGCTCTGGAACAAGAGGCAGAGGAGGAG...ATCCTGAGCTGTAGGTTTGCTCTGTTGTACAGGCTGAAGGTGATAAGAGTCCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS GCA 90 bp | CCATTCTCCACATCCAATCTGACAGGCTGGATTAGGAATATGTGGTaGCTCCCATTCTCCATCCATGTCGTCACTCCAGTCCTCAGGTTT | + |
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Preference number: 5 (lower is better) Translates to: PFSTSNLTGWIRNMW*LPFSIHVVTPVLRF Trigger: AAACCTGAGGACTGGAGTGACGACATGGATGGAGAATGGGAGGCACCACATATTCCTAATCCAGCCTGTCAGATTGGATGTGGAGAATGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS CCA 90 bp | TCATCAAGCCAGCCATCAGGTTTAACAGCACTTGAGTCTTCTATTTaGGCAGGTTCATTTTCATCCCAGTCCTCTGGCCTGACGGCGGTA | + |
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Preference number: 5 (lower is better) Translates to: SSSQPSGLTALESSI*AGSFSSQSSGLTAV Trigger: TACCGCCGTCAGGCCAGAGGACTGGGATGAAAATGAACCTGCCCAAATAGAAGACTCAAGTGCTGTTAAACCTGATGGCTGGCTTGATGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS CCA 90 bp | ACTGAAAGAAGTCAGGAGGAAGGGGTGGTCATCCTCAAAGTAATCTaGGTTGGGAATCTTCTGAGGACTCCAGAGTCCCTGGTAGTTAGG | + |
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Preference number: 5 (lower is better) Translates to: TERSQEEGVVILKVI*VGNLLRTPESLVVR Trigger: CCTAACTACCAGGGACTCTGGAGTCCTCAGAAGATTCCCAACCCAGATTACTTTGAGGATGACCACCCCTTCCTCCTGACTTCTTTCAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS-3UTR CAA 90 bp | CGGCACATCCACAGCCAGGAGTTTGTAGTGATGTTTGCATGGCTCCTCACGCCTGGTCTCCAGATTCCTTaGTATTTTGGGTTATCGATC | + |
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Preference number: 5 (lower is better) Translates to: RHIHSQEFVVMFAWLLTPGLQIP*YFGLSI Trigger: GATCGATAACCCAAAATACAAAGGAATCTGGAGACC...AGGCGTGAGGAGCCATGCAAACATCACTACAAACTCCTGGCTGTGGATGTGCCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR CAA 90 bp | AGTGTAACTCAAGCCAGGGAAGTGTGGCTCGCTCACACACTCTTTATAGTGCTGCATCCTTCTTTGCTTTaGATAAGACCCACCCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: SVTQAREVWLAHTLFIVLHPSLL*IRPTQP Trigger: TGGCTGGGTGGGTCTTATCAAAAGCAAAGAAGGATG...CAGCACTATAAAGAGTGTGTGAGCGAGCCACACTTCCCTGGCTTGAGTTACACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR CAA 90 bp | AAGGTAGTTTGTTTGGGCTCCCACTTCAGATGCAGCTCTGAGGGTGACCTTGTCCCATATCATCCTTCTTaGCTTTTGATAAGACCCACC | + |
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Preference number: 5 (lower is better) Translates to: KVVCLGSHFRCSSEGDLVPYHPS*LLIRPT Trigger: GGTGGGTCTTATCAAAAGCAAAGAAGGATGATATGG...GACAAGGTCACCCTCAGAGCTGCATCTGAAGTGGGAGCCCAAACAAACTACCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS-3UTR CAA 90 bp | AGTGTAACTCAAGCCAGGGAAGTGTGGCTCGCTCACACACTCTTTATAGTGCTGTCGACATCTGGAGGCTaGGCATGCTTTTCTTCAAAA | + |
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Preference number: 5 (lower is better) Translates to: SVTQAREVWLAHTLFIVLSTSGG*ACFSSK Trigger: TTTTGAAGAAAAGCATGCCAAGCCTCCAGATGTCGA...CAGCACTATAAAGAGTGTGTGAGCGAGCCACACTTCCCTGGCTTGAGTTACACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS TCA 90 bp | CCTTACTCTTCTCTTCCGGTTCACCAATTACTTCCTTTTCCACGGTaGCGACCTCAGCTTCACCTGGCTTCTTTTCTTCTTGCACATCTT | + |
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Preference number: 5 (lower is better) Translates to: PYSSLPVHQLLPFPR*RPQLHLASFLLAHL Trigger: AAGATGTGCAAGAAGAAAAGAAGCCAGGTGAAGCTGAGGTCGTCACCGTGGAAAAGGAAGTAATTGGTGAACCGGAAGAGAAGAGTAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS CCA 90 bp | TGCTTGGCTTTAGACTTCAGAACCAGCCCTCTGTCGCCAGGCACCTaGTTTTCCTTCAGTTCTTCTATTTCCCATCTTCCATCATATATA | + |
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Preference number: 5 (lower is better) Translates to: CLALDFRTSPLSPGT*FSFSSSISHLPSYI Trigger: TATATATGATGGAAGATGGGAAATAGAAGAACTGAAGGAAAACCAGGTGCCTGGCGACAGAGGGCTGGTTCTGAAGTCTAAAGCCAAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS CCA 90 bp | CTGAGGACTCCAGAGTCCCTGGTAGTTAGGATTATTGATCATTGGTaGTCTCCAGATTCCTTTGTATTTTGGGTTATCGATCATGGGAGG | + |
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Preference number: 5 (lower is better) Translates to: LRTPESLVVRIIDHW*SPDSFVFWVIDHGR Trigger: CCTCCCATGATCGATAACCCAAAATACAAAGGAATCTGGAGACCACCAATGATCAATAATCCTAACTACCAGGGACTCTGGAGTCCTCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS-3UTR CAA 90 bp | TCACGGACTCTTATCACCTTCAGCCTGTACAACAGAGCAAACCTACAGCTCAGGAGATTCCTTTGTATTTaGGGTTATCGATCATGGGAG | + |
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Preference number: 5 (lower is better) Translates to: SRTLITFSLYNRANLQLRRFLCI*GYRSWE Trigger: CTCCCATGATCGATAACCCAAAATACAAAGGAATCT...CCTGAGCTGTAGGTTTGCTCTGTTGTACAGGCTGAAGGTGATAAGAGTCCGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS TCA 90 bp | GCATTTGCCACCATTATCTTCAGTTCCCAGCCATCTGTAGCCCACTaGTCGGCCACCTCCTTTTCTGAACAGATGATAAAATTATCAAAG | + |
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Preference number: 5 (lower is better) Translates to: AFATIIFSSQPSVAH*SATSFSEQMIKLSK Trigger: CTTTGATAATTTTATCATCTGTTCAGAAAAGGAGGTGGCCGATCAGTGGGCTACAGATGGCTGGGAACTGAAGATAATGGTGGCAAATGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS-3UTR CAA 90 bp | AGTGTAACTCAAGCCAGGGAAGTGTGGCTCGCTCACACACTCTTTATAGTGCTGTTTTCTTTACTTTCCTaGGCCAACAAAAGGAAGCAA | + |
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Preference number: 5 (lower is better) Translates to: SVTQAREVWLAHTLFIVLFSLLS*ANKRKQ Trigger: TTGCTTCCTTTTGTTGGCCAAGGAAAGTAAAGAAAA...CAGCACTATAAAGAGTGTGTGAGCGAGCCACACTTCCCTGGCTTGAGTTACACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002259.13 |
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| CDS CCA 90 bp | GTTAGGATTATTGATCATTGGTGGTCTCCAGATTCCTTTGTATTTTaGGTTATCGATCATGGGAGGTTTCCATTCTCCACATCCAATCTG | + |
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Preference number: 5 (lower is better) Translates to: VRIIDHWWSPDSFVF*VIDHGRFPFSTSNL Trigger: CAGATTGGATGTGGAGAATGGAAACCTCCCATGATCGATAACCCAAAATACAAAGGAATCTGGAGACCACCAATGATCAATAATCCTAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS GCA 72 bp | CACCAGGTACATGAGCCAGAGCCAGGGGCGCTCCTCTaGGGCTATCACCAGCTGTCGGAGTACACCAGGCTC | + |
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Preference number: 6 (lower is better) Translates to: HQVHEPEPGALL*GYHQLSEYTRL Trigger: GAGCCTGGTGTACTCCGACAGCTGGTGATAGCCGCAGAGGAGCGCCCCTGGCTCTGGCTCATGTACCTGGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS TCA 72 bp | CTAATGCAACGGGCAAGCCGGCCATCACCAGGTACATaGGCCAGAGCCAGGGGCGCTCCTCTGCGGCTATCA | + |
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Preference number: 6 (lower is better) Translates to: LMQRASRPSPGT*ARARGAPLRLS Trigger: TGATAGCCGCAGAGGAGCGCCCCTGGCTCTGGCTCATGTACCTGGTGATGGCCGGCTTGCCCGTTGCATTAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS CAA 72 bp | CAGTCCTCTGGCCTGACGGCGGTAGGGTCGGGGATCTaGGCTCTGTCATCCCACTCCTCTGGCTTTTTATCA | + |
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Preference number: 6 (lower is better) Translates to: QSSGLTAVGSGI*ALSSHSSGFLS Trigger: TGATAAAAAGCCAGAGGAGTGGGATGACAGAGCCAAGATCCCCGACCCTACCGCCGTCAGGCCAGAGGACTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS CCA 72 bp | TTCTATTTGGGCAGGTTCATTTTCATCCCAGTCCTCTaGCCTGACGGCGGTAGGGTCGGGGATCTTGGCTCT | + |
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Preference number: 6 (lower is better) Translates to: FYLGRFIFIPVL*PDGGRVGDLGS Trigger: AGAGCCAAGATCCCCGACCCTACCGCCGTCAGGCCAGAGGACTGGGATGAAAATGAACCTGCCCAAATAGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS CCA 72 bp | GGAGGAAGGGGTGGTCATCCTCAAAGTAATCTGGGTTaGGAATCTTCTGAGGACTCCAGAGTCCCTGGTAGT | + |
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Preference number: 6 (lower is better) Translates to: GGRGGHPQSNLG*ESSEDSRVPGS Trigger: ACTACCAGGGACTCTGGAGTCCTCAGAAGATTCCCAACCCAGATTACTTTGAGGATGACCACCCCTTCCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS TCA 72 bp | TCCTGGGCTCTCATCAGCGTCCTTCATCTCATCCTCTaGTCCAGATTTACTCAGCTTGCTCACTTCCTCTTG | + |
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Preference number: 6 (lower is better) Translates to: SWALISVLHLIL*SRFTQLAHFLL Trigger: CAAGAGGAAGTGAGCAAGCTGAGTAAATCTGGATCAGAGGATGAGATGAAGGACGCTGATGAGAGCCCAGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS GCA 72 bp | ACATCCAATCTGACAGGCTGGATTAGGAATATGTGGTaGCTCCCATTCTCCATCCATGTCGTCACTCCAGTC | + |
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Preference number: 6 (lower is better) Translates to: TSNLTGWIRNMW*LPFSIHVVTPV Trigger: GACTGGAGTGACGACATGGATGGAGAATGGGAGGCACCACATATTCCTAATCCAGCCTGTCAGATTGGATGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS CAA 72 bp | TTTTTATCACTGGGGTCGTCAATTTCTCTGGGTGGGTaGATAGGCGGGACCACATCATCTAGCAAGGTCCCT | + |
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Preference number: 6 (lower is better) Translates to: FLSLGSSISLGG*IGGTTSSSKVP Trigger: AGGGACCTTGCTAGATGATGTGGTCCCGCCTATCAACCCACCCAGAGAAATTGACGACCCCAGTGATAAAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS CAA 90 bp | TCACTGAAGTCTTCCACCTCAACACCATCATCCATAAAGTCCGCATaGACCGTGATGAACAGGAGACCCAAACATAGTCCAACACCCTGG | + |
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Preference number: 6 (lower is better) Translates to: SLKSSTSTPSSIKSA*TVMNRRPKHSPTPW Trigger: CCAGGGTGTTGGACTATGTTTGGGTCTCCTGTTCATCACGGTCAATGCGGACTTTATGGATGATGGTGTTGAGGTGGAAGACTTCAGTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS TCA 72 bp | TCGATCATGGGAGGTTTCCATTCTCCACATCCAATCTaGCAGGCTGGATTAGGAATATGTGGTGCCTCCCAT | + |
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Preference number: 6 (lower is better) Translates to: SIMGGFHSPHPI*QAGLGICGASH Trigger: ATGGGAGGCACCACATATTCCTAATCCAGCCTGTCAGATTGGATGTGGAGAATGGAAACCTCCCATGATCGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS TCA 72 bp | TCTCTTCCGGTTCACCAATTACTTCCTTTTCCACGGTaGCGACCTCAGCTTCACCTGGCTTCTTTTCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: SLPVHQLLPFPR*RPQLHLASFLL Trigger: AAGAAGAAAAGAAGCCAGGTGAAGCTGAGGTCGTCACCGTGGAAAAGGAAGTAATTGGTGAACCGGAAGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS CAA 72 bp | TCTTCCACCTCAACACCATCATCCATAAAGTCCGCATaGACCGTGATGAACAGGAGACCCAAACATAGTCCA | + |
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Preference number: 6 (lower is better) Translates to: SSTSTPSSIKSA*TVMNRRPKHSP Trigger: TGGACTATGTTTGGGTCTCCTGTTCATCACGGTCAATGCGGACTTTATGGATGATGGTGTTGAGGTGGAAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS TCA 72 bp | ACCATTATCTTCAGTTCCCAGCCATCTGTAGCCCACTaGTCGGCCACCTCCTTTTCTGAACAGATGATAAAA | + |
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Preference number: 6 (lower is better) Translates to: TIIFSSQPSVAH*SATSFSEQMIK Trigger: TTTTATCATCTGTTCAGAAAAGGAGGTGGCCGATCAGTGGGCTACAGATGGCTGGGAACTGAAGATAATGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS GCA 72 bp | CCTTCATCTCATCCTCTGATCCAGATTTACTCAGCTTaGTCACTTCCTCTTGACCTTCTAGAGTTTCTCTGT | + |
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Preference number: 6 (lower is better) Translates to: PSSHPLIQIYSA*SLPLDLLEFLC Trigger: ACAGAGAAACTCTAGAAGGTCAAGAGGAAGTGAGCAAGCTGAGTAAATCTGGATCAGAGGATGAGATGAAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS CCA 72 bp | CTTCCTGTCTGTAAAGAACTCCTTCAGATCGACATCTaGAGGCTTGGCATGCTTTTCTTCAAAAACTCCAGT | + |
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Preference number: 6 (lower is better) Translates to: LPVCKELLQIDI*RLGMLFFKNSS Trigger: ACTGGAGTTTTTGAAGAAAAGCATGCCAAGCCTCCAGATGTCGATCTGAAGGAGTTCTTTACAGACAGGAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS CCA 72 bp | GTCTCCAGATTCCTTTGTATTTTGGGTTATCGATCATaGGAGGTTTCCATTCTCCACATCCAATCTGACAGG | + |
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Preference number: 6 (lower is better) Translates to: VSRFLCILGYRS*EVSILHIQSDR Trigger: CCTGTCAGATTGGATGTGGAGAATGGAAACCTCCCATGATCGATAACCCAAAATACAAAGGAATCTGGAGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS TCA 72 bp | TCTGATCCAGATTTACTCAGCTTGCTCACTTCCTCTTaGCCTTCTAGAGTTTCTCTGTCTTCCTTACTCTTC | + |
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Preference number: 6 (lower is better) Translates to: SDPDLLSLLTSS*PSRVSLSSLLF Trigger: GAAGAGTAAGGAAGACAGAGAAACTCTAGAAGGTCAAGAGGAAGTGAGCAAGCTGAGTAAATCTGGATCAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS CCA 72 bp | ATTGATCATTGGTGGTCTCCAGATTCCTTTGTATTTTaGGTTATCGATCATGGGAGGTTTCCATTCTCCACA | + |
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Preference number: 6 (lower is better) Translates to: IDHWWSPDSFVF*VIDHGRFPFST Trigger: TGTGGAGAATGGAAACCTCCCATGATCGATAACCCAAAATACAAAGGAATCTGGAGACCACCAATGATCAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS CAA 72 bp | TTAGGATTATTGATCATTGGTGGTCTCCAGATTCCTTaGTATTTTGGGTTATCGATCATGGGAGGTTTCCAT | + |
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Preference number: 6 (lower is better) Translates to: LGLLIIGGLQIP*YFGLSIMGGFH Trigger: ATGGAAACCTCCCATGATCGATAACCCAAAATACAAAGGAATCTGGAGACCACCAATGATCAATAATCCTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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| CDS TCA 72 bp | ACATCATCTAGCAAGGTCCCTTGGTTCACAACTTTCTaGTCAATTAATACTTCAAATGTATCATCCGGATTC | + |
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Preference number: 6 (lower is better) Translates to: TSSSKVPWFTTF*SINTSNVSSGF Trigger: GAATCCGGATGATACATTTGAAGTATTAATTGATCAGAAAGTTGTGAACCAAGGGACCTTGCTAGATGATGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002259.13 ENSMUST00000109831.3 |
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