Pregenerated sensors for CLEC4N (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023349Ensembl transcript IDs: ENSMUST00000024118.11, ENSMUST00000112554.9, ENSMUST00000117130.8, ENSMUST00000151714.4, ENSMUST00000205129.2
Found 72 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCAGTTCATAGAAAGAAACCAGGGCAAGACCCTGGGGCAGAAACCTaGGGGCAGAGATGGATGGATGATGCTCCCTGGCTTGCTCTTCAT | + |
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Preference number: 1 (lower is better) Translates to: AVHRKKPGQDPGAET*GQRWMDDAPWLALH Trigger: ATGAAGAGCAAGCCAGGGAGCATCATCCATCCATCTCTGCCCTCAGGTTTCTGCCCCAGGGTCTTGCCCTGGTTTCTTTCTATGAACTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 ENSMUST00000151714.4 |
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| 3UTR CCA 90 bp | CTCCCTGGCTTGCTCTTCATGGGTTTAACACCTTTGCTTACCACCTaGACCCTCTTACAACAATCATTAATCAAGAAAATGCCCCCAGAC | + |
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Preference number: 1 (lower is better) Translates to: LPGLLFMGLTPLLTT*TLLQQSLIKKMPPD Trigger: GTCTGGGGGCATTTTCTTGATTAATGATTGTTGTAAGAGGGTCCAGGTGGTAAGCAAAGGTGTTAAACCCATGAAGAGCAAGCCAGGGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 ENSMUST00000151714.4 |
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| 3UTR TCA 90 bp | TCTTCTGGAAGATTGGGTTCATGGGGGTGCCAGAACCTGACATTTTaGCTGAAAGGAGTATCATCGATCCATTGCCATTTGCCATTACCT | + |
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Preference number: 1 (lower is better) Translates to: SSGRLGSWGCQNLTF*LKGVSSIHCHLPLP Trigger: AGGTAATGGCAAATGGCAATGGATCGATGATACTCCTTTCAGTCAAAATGTCAGGTTCTGGCACCCCCATGAACCCAATCTTCCAGAAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000151714.4 |
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| 3UTR TCA 90 bp | ACCATAGTCCCTTCACTGAAGCAGGTGAGACTGGAATGGTATGTGTaGAGTTCATATAGTCTTCTACTGGGCTGGTCCATAATAAATTGG | + |
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Preference number: 1 (lower is better) Translates to: TIVPSLKQVRLEWYV*SSYSLLLGWSIINW Trigger: CCAATTTATTATGGACCAGCCCAGTAGAAGACTATATGAACTTCACACATACCATTCCAGTCTCACCTGCTTCAGTGAAGGGACTATGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151714.4 |
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| 3UTR-3UTR CCA 90 bp | TTCATAGAAAGAAACCAGGGCAAGACCCTGGGGCAGAAACCTGAGGGCAGAGATATGGATGATGCTCCCTaGCTTGCTCTTCATGGGTTT | + |
|
Preference number: 2 (lower is better) Translates to: FIERNQGKTLGQKPEGRDMDDAP*LALHGF Trigger: AAACCCATGAAGAGCAAGCCAGGGAGCATCATCCAT...ATCTCTGCCCTCAGGTTTCTGCCCCAGGGTCTTGCCCTGGTTTCTTTCTATGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 ENSMUST00000151714.4 |
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| 3UTR-3UTR CCA 90 bp | CAAGTAACAGCAGTTCATAGAAAGAAACCAGGGCAAGACCCTGGGGCAGAAACCCACAGTTCTGCTCACTaGTGCTCCAGAAGTTCTCCT | + |
|
Preference number: 2 (lower is better) Translates to: QVTAVHRKKPGQDPGAETHSSAH*CSRSSP Trigger: AGGAGAACTTCTGGAGCACCAGTGAGCAGAACTGTG...GGTTTCTGCCCCAGGGTCTTGCCCTGGTTTCTTTCTATGAACTGCTGTTACTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151714.4 |
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| 3UTR-3UTR TCA 90 bp | GCTTACCACCTGGACCCTCTTACAACAATCATTAATCAAGAAAATGCCCCCAGAGCTGACTGGTCAAGCTaGCAGAGGCAATTCCTTAGC | + |
|
Preference number: 2 (lower is better) Translates to: AYHLDPLTTIINQENAPRADWSS*QRQFLS Trigger: GCTAAGGAATTGCCTCTGTCAGCTTGACCAGTCAGC...TCTGGGGGCATTTTCTTGATTAATGATTGTTGTAAGAGGGTCCAGGTGGTAAGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 ENSMUST00000151714.4 |
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| 3UTR-3UTR TCA 90 bp | CCTTTGCTTACCACCTGGACCCTCTTACAACAATCATTAATCAAGAAAATGCCCGCTGACTGGTCAAGCTaGCAGAGGCAATTCCTTAGC | + |
|
Preference number: 2 (lower is better) Translates to: PLLTTWTLLQQSLIKKMPADWSS*QRQFLS Trigger: GCTAAGGAATTGCCTCTGTCAGCTTGACCAGTCAGC...GGGCATTTTCTTGATTAATGATTGTTGTAAGAGGGTCCAGGTGGTAAGCAAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 ENSMUST00000151714.4 |
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| 3UTR-3UTR TCA 90 bp | CCTTTGCTTACCACCTGGACCCTCTTACAACAATCATTAATCAAGAAAATGCCCAGGCAATTCCTTAGCTaGAGATCCTACTCCCCAGGT | + |
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Preference number: 2 (lower is better) Translates to: PLLTTWTLLQQSLIKKMPRQFLS*RSYSPG Trigger: ACCTGGGGAGTAGGATCTTCAGCTAAGGAATTGCCT...GGGCATTTTCTTGATTAATGATTGTTGTAAGAGGGTCCAGGTGGTAAGCAAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 ENSMUST00000151714.4 |
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| 3UTR-3UTR TCA 90 bp | TTACAACAATCATTAATCAAGAAAATGCCCCCAGACATGCTGACTGGTCAAGCTAGGCAATTCCTTAGCTaGAGATCCTACTCCCCAGGT | + |
|
Preference number: 2 (lower is better) Translates to: LQQSLIKKMPPDMLTGQARQFLS*RSYSPG Trigger: ACCTGGGGAGTAGGATCTTCAGCTAAGGAATTGCCT...AGCTTGACCAGTCAGCATGTCTGGGGGCATTTTCTTGATTAATGATTGTTGTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 ENSMUST00000151714.4 |
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| 3UTR-3UTR CCA 90 bp | CTTACCACCTGGACCCTCTTACAACAATCATTAATCAAGAAAATGCCCCCAGACCAGGCCAAGAAGTTATaGCTTCTTGGTAGGTCTGAA | + |
|
Preference number: 2 (lower is better) Translates to: LTTWTLLQQSLIKKMPPDQAKKL*LLGRSE Trigger: TTCAGACCTACCAAGAAGCCATAACTTCTTGGCCTG...GTCTGGGGGCATTTTCTTGATTAATGATTGTTGTAAGAGGGTCCAGGTGGTAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 ENSMUST00000151714.4 |
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| 3UTR TCA 72 bp | ACCTTGTGGATCCGAAAGACCCAGGAAGTAAGAAAGTaGCTCATTCAGCTGCTGGGTGATGAAATTCTGCTC | + |
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Preference number: 3 (lower is better) Translates to: TLWIRKTQEVRK*LIQLLGDEILL Trigger: GAGCAGAATTTCATCACCCAGCAGCTGAATGAGTCACTTTCTTACTTCCTGGGTCTTTCGGATCCACAAGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151714.4 |
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| 3UTR TCA 72 bp | CCTTCACTGAAGCAGGTGAGACTGGAATGGTATGTGTaGAGTTCATATAGTCTTCTACTGGGCTGGTCCATA | + |
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Preference number: 3 (lower is better) Translates to: PSLKQVRLEWYV*SSYSLLLGWSI Trigger: TATGGACCAGCCCAGTAGAAGACTATATGAACTTCACACATACCATTCCAGTCTCACCTGCTTCAGTGAAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151714.4 |
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| 3UTR TCA 72 bp | AGATTGGGTTCATGGGGGTGCCAGAACCTGACATTTTaGCTGAAAGGAGTATCATCGATCCATTGCCATTTG | + |
|
Preference number: 3 (lower is better) Translates to: RLGSWGCQNLTF*LKGVSSIHCHL Trigger: CAAATGGCAATGGATCGATGATACTCCTTTCAGTCAAAATGTCAGGTTCTGGCACCCCCATGAACCCAATCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000151714.4 |
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| 3UTR-3UTR CAA 90 bp | CAAGTAACAGCAGTTCATAGAAAGAAACCAGGGCAAGACCCTGGGGCAGAAACCAGAAGTTATGGCTTCTaGGTAGGTCTGAACTTTAAA | + |
|
Preference number: 3 (lower is better) Translates to: QVTAVHRKKPGQDPGAETRSYGF*VGLNFK Trigger: TTTAAAGTTCAGACCTACCAAGAAGCCATAACTTCT...GGTTTCTGCCCCAGGGTCTTGCCCTGGTTTCTTTCTATGAACTGCTGTTACTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 ENSMUST00000151714.4 |
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| 3UTR-3UTR CAA 90 bp | GCTTACCACCTGGACCCTCTTACAACAATCATTAATCAAGAAAATGCCCCCAGAAGAAGTTATGGCTTCTaGGTAGGTCTGAACTTTAAA | + |
|
Preference number: 3 (lower is better) Translates to: AYHLDPLTTIINQENAPRRSYGF*VGLNFK Trigger: TTTAAAGTTCAGACCTACCAAGAAGCCATAACTTCT...TCTGGGGGCATTTTCTTGATTAATGATTGTTGTAAGAGGGTCCAGGTGGTAAGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 ENSMUST00000151714.4 |
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| 3UTR CCA 72 bp | TTGCTCTTCATGGGTTTAACACCTTTGCTTACCACCTaGACCCTCTTACAACAATCATTAATCAAGAAAATG | + |
|
Preference number: 3 (lower is better) Translates to: LLFMGLTPLLTT*TLLQQSLIKKM Trigger: CATTTTCTTGATTAATGATTGTTGTAAGAGGGTCCAGGTGGTAAGCAAAGGTGTTAAACCCATGAAGAGCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 ENSMUST00000151714.4 |
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| CDS-3UTR TCA 90 bp | CAGCAGTTCATAGAAAGAAACCAGGGCAAGACCCTGGGGCAGAAACCTGAGGGCCCAAATGACTTCCAGTaGTTTGGGCAGCATCCCCAC | + |
|
Preference number: 4 (lower is better) Translates to: QQFIERNQGKTLGQKPEGPNDFQ*FGQHPH Trigger: GTGGGGATGCTGCCCAAATCACTGGAAGTCATTTGG...GCCCTCAGGTTTCTGCCCCAGGGTCTTGCCCTGGTTTCTTTCTATGAACTGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR CCA 90 bp | CAGCAGTTCATAGAAAGAAACCAGGGCAAGACCCTGGGGCAGAAACCTGAGGGCCAGACTCCCTTCCCTTaGGATTGTCTTTCCTGCACC | + |
|
Preference number: 4 (lower is better) Translates to: QQFIERNQGKTLGQKPEGQTPFP*DCLSCT Trigger: GGTGCAGGAAAGACAATCCCAAGGGAAGGGAGTCTG...GCCCTCAGGTTTCTGCCCCAGGGTCTTGCCCTGGTTTCTTTCTATGAACTGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000151714.4 |
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| CDS-3UTR CCA 90 bp | CAGCAGTTCATAGAAAGAAACCAGGGCAAGACCCTGGGGCAGAAACCTGAGGGCGCTCTTCTGGAAGATTaGGTTCATGGGGGTGCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: QQFIERNQGKTLGQKPEGALLED*VHGGAR Trigger: TCTGGCACCCCCATGAACCCAATCTTCCAGAAGAGC...GCCCTCAGGTTTCTGCCCCAGGGTCTTGCCCTGGTTTCTTTCTATGAACTGCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR TCA 90 bp | TTCATAGAAAGAAACCAGGGCAAGACCCTGGGGCAGAAACCTGAGGGCAGAGATGGAAATCACAGCAGCTaGCCAGAGTCTCAGGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: FIERNQGKTLGQKPEGRDGNHSS*PESQGP Trigger: TGGACCCTGAGACTCTGGTCAGCTGCTGTGATTTCC...ATCTCTGCCCTCAGGTTTCTGCCCCAGGGTCTTGCCCTGGTTTCTTTCTATGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000151714.4 |
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| CDS-3UTR GCA 90 bp | CAGCAGTTCATAGAAAGAAACCAGGGCAAGACCCTGGGGCAGAAACCTGAGGGCAGTTCTGCTCACTGGTaGTCCAGAAGTTCTCCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: QQFIERNQGKTLGQKPEGSSAHW*SRSSPW Trigger: CCAAGGAGAACTTCTGGAGCACCAGTGAGCAGAACT...GCCCTCAGGTTTCTGCCCCAGGGTCTTGCCCTGGTTTCTTTCTATGAACTGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR TCA 90 bp | TTCATAGAAAGAAACCAGGGCAAGACCCTGGGGCAGAAACCTGAGGGCAGAGATGCAGCTGGAGCCAAATaGCTTCCAGTGATTTGGGCA | + |
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Preference number: 4 (lower is better) Translates to: FIERNQGKTLGQKPEGRDAAGAK*LPVIWA Trigger: TGCCCAAATCACTGGAAGTCATTTGGCTCCAGCTGC...ATCTCTGCCCTCAGGTTTCTGCCCCAGGGTCTTGCCCTGGTTTCTTTCTATGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR TCA 90 bp | CAGCAGTTCATAGAAAGAAACCAGGGCAAGACCCTGGGGCAGAAACCTGAGGGCCAGGAAGTAAGAAAGTaGCTCATTCAGCTGCTGGGT | + |
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Preference number: 4 (lower is better) Translates to: QQFIERNQGKTLGQKPEGQEVRK*LIQLLG Trigger: ACCCAGCAGCTGAATGAGTCACTTTCTTACTTCCTG...GCCCTCAGGTTTCTGCCCCAGGGTCTTGCCCTGGTTTCTTTCTATGAACTGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR CCA 90 bp | CAGCAGTTCATAGAAAGAAACCAGGGCAAGACCCTGGGGCAGAAACCTGAGGGCGACTCATTCAGCTGCTaGGTGATGAAATTCTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: QQFIERNQGKTLGQKPEGDSFSC*VMKFCS Trigger: GGAGCAGAATTTCATCACCCAGCAGCTGAATGAGTC...GCCCTCAGGTTTCTGCCCCAGGGTCTTGCCCTGGTTTCTTTCTATGAACTGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR TCA 90 bp | AAGAACGGCCTCTGTCAGATGTACAGGCCAAGAAGTTATGGCTTCTTGGTAGGTGGAAATCACAGCAGCTaGCCAGAGTCTCAGGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: KNGLCQMYRPRSYGFLVGGNHSS*PESQGP Trigger: TGGACCCTGAGACTCTGGTCAGCTGCTGTGATTTCC...ACCTACCAAGAAGCCATAACTTCTTGGCCTGTACATCTGACAGAGGCCGTTCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000151714.4 |
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| CDS-3UTR GCA 90 bp | TTCATAGAAAGAAACCAGGGCAAGACCCTGGGGCAGAAACCTGAGGGCAGAGATAGTTCTGCTCACTGGTaGTCCAGAAGTTCTCCTTGG | + |
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Preference number: 4 (lower is better) Translates to: FIERNQGKTLGQKPEGRDSSAHW*SRSSPW Trigger: CCAAGGAGAACTTCTGGAGCACCAGTGAGCAGAACT...ATCTCTGCCCTCAGGTTTCTGCCCCAGGGTCTTGCCCTGGTTTCTTTCTATGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR CCA 90 bp | CAAGTAACAGCAGTTCATAGAAAGAAACCAGGGCAAGACCCTGGGGCAGAAACCCAGACTCCCTTCCCTTaGGATTGTCTTTCCTGCACC | + |
|
Preference number: 4 (lower is better) Translates to: QVTAVHRKKPGQDPGAETQTPFP*DCLSCT Trigger: GGTGCAGGAAAGACAATCCCAAGGGAAGGGAGTCTG...GGTTTCTGCCCCAGGGTCTTGCCCTGGTTTCTTTCTATGAACTGCTGTTACTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000151714.4 |
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| CDS-3UTR CCA 90 bp | TTCATAGAAAGAAACCAGGGCAAGACCCTGGGGCAGAAACCTGAGGGCAGAGATAACACACCGCTCTTCTaGAAGATTGGGTTCATGGGG | + |
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Preference number: 4 (lower is better) Translates to: FIERNQGKTLGQKPEGRDNTPLF*KIGFMG Trigger: CCCCATGAACCCAATCTTCCAGAAGAGCGGTGTGTT...ATCTCTGCCCTCAGGTTTCTGCCCCAGGGTCTTGCCCTGGTTTCTTTCTATGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR TCA 90 bp | CAGCAGTTCATAGAAAGAAACCAGGGCAAGACCCTGGGGCAGAAACCTGAGGGCCAGAACCTGACATTTTaGCTGAAAGGAGTATCATCG | + |
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Preference number: 4 (lower is better) Translates to: QQFIERNQGKTLGQKPEGQNLTF*LKGVSS Trigger: CGATGATACTCCTTTCAGTCAAAATGTCAGGTTCTG...GCCCTCAGGTTTCTGCCCCAGGGTCTTGCCCTGGTTTCTTTCTATGAACTGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR TCA 90 bp | ATAGTGGCTAGGAAAAGAACGGCCTCTGTCAGATGTACAGGCCAAGAAGTTATGCCAAATGACTTCCAGTaGTTTGGGCAGCATCCCCAC | + |
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Preference number: 4 (lower is better) Translates to: IVARKRTASVRCTGQEVMPNDFQ*FGQHPH Trigger: GTGGGGATGCTGCCCAAATCACTGGAAGTCATTTGG...CATAACTTCTTGGCCTGTACATCTGACAGAGGCCGTTCTTTTCCTAGCCACTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR CCA 90 bp | AAGAACGGCCTCTGTCAGATGTACAGGCCAAGAAGTTATGGCTTCTTGGTAGGTCACAGTTCTGCTCACTaGTGCTCCAGAAGTTCTCCT | + |
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Preference number: 4 (lower is better) Translates to: KNGLCQMYRPRSYGFLVGHSSAH*CSRSSP Trigger: AGGAGAACTTCTGGAGCACCAGTGAGCAGAACTGTG...ACCTACCAAGAAGCCATAACTTCTTGGCCTGTACATCTGACAGAGGCCGTTCTT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR TCA 90 bp | CAGCAGTTCATAGAAAGAAACCAGGGCAAGACCCTGGGGCAGAAACCTGAGGGCCTGGAATGGTATGTGTaGAGTTCATATAGTCTTCTA | + |
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Preference number: 4 (lower is better) Translates to: QQFIERNQGKTLGQKPEGLEWYV*SSYSLL Trigger: TAGAAGACTATATGAACTTCACACATACCATTCCAG...GCCCTCAGGTTTCTGCCCCAGGGTCTTGCCCTGGTTTCTTTCTATGAACTGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024118.11 ENSMUST00000117130.8 |
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| CDS-3UTR TCA 90 bp | CAACAATCATTAATCAAGAAAATGCCCCCAGACATGCTGACTGGTCAAGCTGACGCAGCTGGAGCCAAATaGCTTCCAGTGATTTGGGCA | + |
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Preference number: 4 (lower is better) Translates to: QQSLIKKMPPDMLTGQADAAGAK*LPVIWA Trigger: TGCCCAAATCACTGGAAGTCATTTGGCTCCAGCTGC...GTCAGCTTGACCAGTCAGCATGTCTGGGGGCATTTTCTTGATTAATGATTGTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR TCA 90 bp | CTTACCACCTGGACCCTCTTACAACAATCATTAATCAAGAAAATGCCCCCAGACGCAGCTGGAGCCAAATaGCTTCCAGTGATTTGGGCA | + |
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Preference number: 4 (lower is better) Translates to: LTTWTLLQQSLIKKMPPDAAGAK*LPVIWA Trigger: TGCCCAAATCACTGGAAGTCATTTGGCTCCAGCTGC...GTCTGGGGGCATTTTCTTGATTAATGATTGTTGTAAGAGGGTCCAGGTGGTAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR TCA 90 bp | TTCATAGAAAGAAACCAGGGCAAGACCCTGGGGCAGAAACCTGAGGGCAGAGATCAGAACCTGACATTTTaGCTGAAAGGAGTATCATCG | + |
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Preference number: 4 (lower is better) Translates to: FIERNQGKTLGQKPEGRDQNLTF*LKGVSS Trigger: CGATGATACTCCTTTCAGTCAAAATGTCAGGTTCTG...ATCTCTGCCCTCAGGTTTCTGCCCCAGGGTCTTGCCCTGGTTTCTTTCTATGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR CCA 90 bp | ATAGTGGCTAGGAAAAGAACGGCCTCTGTCAGATGTACAGGCCAAGAAGTTATGCACAGTTCTGCTCACTaGTGCTCCAGAAGTTCTCCT | + |
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Preference number: 4 (lower is better) Translates to: IVARKRTASVRCTGQEVMHSSAH*CSRSSP Trigger: AGGAGAACTTCTGGAGCACCAGTGAGCAGAACTGTG...CATAACTTCTTGGCCTGTACATCTGACAGAGGCCGTTCTTTTCCTAGCCACTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR TCA 90 bp | GTGTTTACTATCACAGAAAACATCATTCCAGCCCCATTTCGAAGGATTCCAGTAGGAAATCACAGCAGCTaGCCAGAGTCTCAGGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: VFTITENIIPAPFRRIPVGNHSS*PESQGP Trigger: TGGACCCTGAGACTCTGGTCAGCTGCTGTGATTTCC...TACTGGAATCCTTCGAAATGGGGCTGGAATGATGTTTTCTGTGATAGTAAACAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000151714.4 ENSMUST00000205129.2 |
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| CDS-3UTR TCA 90 bp | CCTTTGCTTACCACCTGGACCCTCTTACAACAATCATTAATCAAGAAAATGCCCCCAAATGACTTCCAGTaGTTTGGGCAGCATCCCCAC | + |
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Preference number: 4 (lower is better) Translates to: PLLTTWTLLQQSLIKKMPPNDFQ*FGQHPH Trigger: GTGGGGATGCTGCCCAAATCACTGGAAGTCATTTGG...GGGCATTTTCTTGATTAATGATTGTTGTAAGAGGGTCCAGGTGGTAAGCAAAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR CCA 90 bp | CTTACCACCTGGACCCTCTTACAACAATCATTAATCAAGAAAATGCCCCCAGACCACAGTTCTGCTCACTaGTGCTCCAGAAGTTCTCCT | + |
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Preference number: 4 (lower is better) Translates to: LTTWTLLQQSLIKKMPPDHSSAH*CSRSSP Trigger: AGGAGAACTTCTGGAGCACCAGTGAGCAGAACTGTG...GTCTGGGGGCATTTTCTTGATTAATGATTGTTGTAAGAGGGTCCAGGTGGTAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR CCA 90 bp | ATAGTGGCTAGGAAAAGAACGGCCTCTGTCAGATGTACAGGCCAAGAAGTTATGGACTCATTCAGCTGCTaGGTGATGAAATTCTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: IVARKRTASVRCTGQEVMDSFSC*VMKFCS Trigger: GGAGCAGAATTTCATCACCCAGCAGCTGAATGAGTC...CATAACTTCTTGGCCTGTACATCTGACAGAGGCCGTTCTTTTCCTAGCCACTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR CCA 90 bp | CCTTTGCTTACCACCTGGACCCTCTTACAACAATCATTAATCAAGAAAATGCCCGCTCTTCTGGAAGATTaGGTTCATGGGGGTGCCAGA | + |
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Preference number: 4 (lower is better) Translates to: PLLTTWTLLQQSLIKKMPALLED*VHGGAR Trigger: TCTGGCACCCCCATGAACCCAATCTTCCAGAAGAGC...GGGCATTTTCTTGATTAATGATTGTTGTAAGAGGGTCCAGGTGGTAAGCAAAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR TCA 90 bp | CAACAATCATTAATCAAGAAAATGCCCCCAGACATGCTGACTGGTCAAGCTGACCAGGAAGTAAGAAAGTaGCTCATTCAGCTGCTGGGT | + |
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Preference number: 4 (lower is better) Translates to: QQSLIKKMPPDMLTGQADQEVRK*LIQLLG Trigger: ACCCAGCAGCTGAATGAGTCACTTTCTTACTTCCTG...GTCAGCTTGACCAGTCAGCATGTCTGGGGGCATTTTCTTGATTAATGATTGTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR TCA 90 bp | AAGAACGGCCTCTGTCAGATGTACAGGCCAAGAAGTTATGGCTTCTTGGTAGGTATTCCAGTAAACTATTaGAACACACCGCTCTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: KNGLCQMYRPRSYGFLVGIPVNY*NTPLFW Trigger: CCAGAAGAGCGGTGTGTTTCAATAGTTTACTGGAAT...ACCTACCAAGAAGCCATAACTTCTTGGCCTGTACATCTGACAGAGGCCGTTCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR GCA 90 bp | CAAGTAACAGCAGTTCATAGAAAGAAACCAGGGCAAGACCCTGGGGCAGAAACCGTATCATCGATCCATTaGCATTTGCCATTACCTTGT | + |
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Preference number: 4 (lower is better) Translates to: QVTAVHRKKPGQDPGAETVSSIH*HLPLPC Trigger: ACAAGGTAATGGCAAATGGCAATGGATCGATGATAC...GGTTTCTGCCCCAGGGTCTTGCCCTGGTTTCTTTCTATGAACTGCTGTTACTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR CCA 90 bp | TTGTGTTTACTATCACAGAAAACATCATTCCAGCCCCATTTCGAAGGATTCCAGCAGACTCCCTTCCCTTaGGATTGTCTTTCCTGCACC | + |
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Preference number: 4 (lower is better) Translates to: LCLLSQKTSFQPHFEGFQQTPFP*DCLSCT Trigger: GGTGCAGGAAAGACAATCCCAAGGGAAGGGAGTCTG...CTGGAATCCTTCGAAATGGGGCTGGAATGATGTTTTCTGTGATAGTAAACACAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000151714.4 ENSMUST00000205129.2 |
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| CDS-3UTR CCA 90 bp | GCTTACCACCTGGACCCTCTTACAACAATCATTAATCAAGAAAATGCCCCCAGAGACTCATTCAGCTGCTaGGTGATGAAATTCTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: AYHLDPLTTIINQENAPRDSFSC*VMKFCS Trigger: GGAGCAGAATTTCATCACCCAGCAGCTGAATGAGTC...TCTGGGGGCATTTTCTTGATTAATGATTGTTGTAAGAGGGTCCAGGTGGTAAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR CCA 90 bp | TTACAACAATCATTAATCAAGAAAATGCCCCCAGACATGCTGACTGGTCAAGCTGCTCTTCTGGAAGATTaGGTTCATGGGGGTGCCAGA | + |
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Preference number: 4 (lower is better) Translates to: LQQSLIKKMPPDMLTGQAALLED*VHGGAR Trigger: TCTGGCACCCCCATGAACCCAATCTTCCAGAAGAGC...AGCTTGACCAGTCAGCATGTCTGGGGGCATTTTCTTGATTAATGATTGTTGTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR CCA 90 bp | TGTGTTTACTATCACAGAAAACATCATTCCAGCCCCATTTCGAAGGATTCCAGTGCTCTTCTGGAAGATTaGGTTCATGGGGGTGCCAGA | + |
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Preference number: 4 (lower is better) Translates to: CVYYHRKHHSSPISKDSSALLED*VHGGAR Trigger: TCTGGCACCCCCATGAACCCAATCTTCCAGAAGAGC...ACTGGAATCCTTCGAAATGGGGCTGGAATGATGTTTTCTGTGATAGTAAACACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000205129.2 |
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| 3UTR CAA 72 bp | ATGCTCCCTGGCTTGCTCTTCATGGGTTTAACACCTTaGCTTACCACCTGGACCCTCTTACAACAATCATTA | + |
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Preference number: 4 (lower is better) Translates to: MLPGLLFMGLTP*LTTWTLLQQSL Trigger: TAATGATTGTTGTAAGAGGGTCCAGGTGGTAAGCAAAGGTGTTAAACCCATGAAGAGCAAGCCAGGGAGCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 ENSMUST00000151714.4 |
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| CDS-3UTR TCA 90 bp | ATAGTGGCTAGGAAAAGAACGGCCTCTGTCAGATGTACAGGCCAAGAAGTTATGATTCCAGTAAACTATTaGAACACACCGCTCTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: IVARKRTASVRCTGQEVMIPVNY*NTPLFW Trigger: CCAGAAGAGCGGTGTGTTTCAATAGTTTACTGGAAT...CATAACTTCTTGGCCTGTACATCTGACAGAGGCCGTTCTTTTCCTAGCCACTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR GCA 90 bp | TTACAACAATCATTAATCAAGAAAATGCCCCCAGACATGCTGACTGGTCAAGCTAGTTCTGCTCACTGGTaGTCCAGAAGTTCTCCTTGG | + |
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Preference number: 4 (lower is better) Translates to: LQQSLIKKMPPDMLTGQASSAHW*SRSSPW Trigger: CCAAGGAGAACTTCTGGAGCACCAGTGAGCAGAACT...AGCTTGACCAGTCAGCATGTCTGGGGGCATTTTCTTGATTAATGATTGTTGTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR CCA 90 bp | GAATTGTGTTTACTATCACAGAAAACATCATTCCAGCCCCATTTCGAAGGATTCCAGACTCCCTTCCCTTaGGATTGTCTTTCCTGCACC | + |
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Preference number: 4 (lower is better) Translates to: ELCLLSQKTSFQPHFEGFQTPFP*DCLSCT Trigger: GGTGCAGGAAAGACAATCCCAAGGGAAGGGAGTCTG...GAATCCTTCGAAATGGGGCTGGAATGATGTTTTCTGTGATAGTAAACACAATTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000151714.4 ENSMUST00000205129.2 |
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| CDS-3UTR CCA 90 bp | TTACAACAATCATTAATCAAGAAAATGCCCCCAGACATGCTGACTGGTCAAGCTAACACACCGCTCTTCTaGAAGATTGGGTTCATGGGG | + |
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Preference number: 4 (lower is better) Translates to: LQQSLIKKMPPDMLTGQANTPLF*KIGFMG Trigger: CCCCATGAACCCAATCTTCCAGAAGAGCGGTGTGTT...AGCTTGACCAGTCAGCATGTCTGGGGGCATTTTCTTGATTAATGATTGTTGTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| 3UTR CAA 72 bp | CATTCCAGCCCCATTTCGAAGGATTCCAGTAAACTATaGAAACACACCGCTCTTCTGGAAGATTGGGTTCAT | + |
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Preference number: 4 (lower is better) Translates to: HSSPISKDSSKL*KHTALLEDWVH Trigger: ATGAACCCAATCTTCCAGAAGAGCGGTGTGTTTCAATAGTTTACTGGAATCCTTCGAAATGGGGCTGGAATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151714.4 |
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| CDS-3UTR TCA 90 bp | TTACAACAATCATTAATCAAGAAAATGCCCCCAGACATGCTGACTGGTCAAGCTCAGGAAGTAAGAAAGTaGCTCATTCAGCTGCTGGGT | + |
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Preference number: 4 (lower is better) Translates to: LQQSLIKKMPPDMLTGQAQEVRK*LIQLLG Trigger: ACCCAGCAGCTGAATGAGTCACTTTCTTACTTCCTG...AGCTTGACCAGTCAGCATGTCTGGGGGCATTTTCTTGATTAATGATTGTTGTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR TCA 90 bp | GCTTACCACCTGGACCCTCTTACAACAATCATTAATCAAGAAAATGCCCCCAGAATTCCAGTAAACTATTaGAACACACCGCTCTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: AYHLDPLTTIINQENAPRIPVNY*NTPLFW Trigger: CCAGAAGAGCGGTGTGTTTCAATAGTTTACTGGAAT...TCTGGGGGCATTTTCTTGATTAATGATTGTTGTAAGAGGGTCCAGGTGGTAAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR GCA 90 bp | ATAGTGGCTAGGAAAAGAACGGCCTCTGTCAGATGTACAGGCCAAGAAGTTATGGTATCATCGATCCATTaGCATTTGCCATTACCTTGT | + |
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Preference number: 4 (lower is better) Translates to: IVARKRTASVRCTGQEVMVSSIH*HLPLPC Trigger: ACAAGGTAATGGCAAATGGCAATGGATCGATGATAC...CATAACTTCTTGGCCTGTACATCTGACAGAGGCCGTTCTTTTCCTAGCCACTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR CCA 90 bp | CTTACCACCTGGACCCTCTTACAACAATCATTAATCAAGAAAATGCCCCCAGACTACTCAAGAGTAACATaGAAATCACAGCAGCTGACC | + |
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Preference number: 4 (lower is better) Translates to: LTTWTLLQQSLIKKMPPDYSRVT*KSQQLT Trigger: GGTCAGCTGCTGTGATTTCCATGTTACTCTTGAGTA...GTCTGGGGGCATTTTCTTGATTAATGATTGTTGTAAGAGGGTCCAGGTGGTAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000151714.4 |
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| CDS-3UTR TCA 90 bp | GCTTACCACCTGGACCCTCTTACAACAATCATTAATCAAGAAAATGCCCCCAGACTGGAATGGTATGTGTaGAGTTCATATAGTCTTCTA | + |
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Preference number: 4 (lower is better) Translates to: AYHLDPLTTIINQENAPRLEWYV*SSYSLL Trigger: TAGAAGACTATATGAACTTCACACATACCATTCCAG...TCTGGGGGCATTTTCTTGATTAATGATTGTTGTAAGAGGGTCCAGGTGGTAAGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024118.11 ENSMUST00000117130.8 |
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| CDS-3UTR TCA 90 bp | TTACAACAATCATTAATCAAGAAAATGCCCCCAGACATGCTGACTGGTCAAGCTCAGAACCTGACATTTTaGCTGAAAGGAGTATCATCG | + |
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Preference number: 4 (lower is better) Translates to: LQQSLIKKMPPDMLTGQAQNLTF*LKGVSS Trigger: CGATGATACTCCTTTCAGTCAAAATGTCAGGTTCTG...AGCTTGACCAGTCAGCATGTCTGGGGGCATTTTCTTGATTAATGATTGTTGTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR CCA 90 bp | ATATTGAATTGTGTTTACTATCACAGAAAACATCATTCCAGCCCCATTTCGAAGAACACACCGCTCTTCTaGAAGATTGGGTTCATGGGG | + |
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Preference number: 4 (lower is better) Translates to: ILNCVYYHRKHHSSPISKNTPLF*KIGFMG Trigger: CCCCATGAACCCAATCTTCCAGAAGAGCGGTGTGTT...CTTCGAAATGGGGCTGGAATGATGTTTTCTGTGATAGTAAACACAATTCAATAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000205129.2 |
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| CDS-3UTR CAA 90 bp | CAACAATCATTAATCAAGAAAATGCCCCCAGACATGCTGACTGGTCAAGCTGACCGCTCTTCTGGAAGATaGGGTTCATGGGGGTGCCAG | + |
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Preference number: 5 (lower is better) Translates to: QQSLIKKMPPDMLTGQADRSSGR*GSWGCQ Trigger: CTGGCACCCCCATGAACCCAATCTTCCAGAAGAGCG...GTCAGCTTGACCAGTCAGCATGTCTGGGGGCATTTTCTTGATTAATGATTGTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR CAA 90 bp | TTACAACAATCATTAATCAAGAAAATGCCCCCAGACATGCTGACTGGTCAAGCTCGCTCTTCTGGAAGATaGGGTTCATGGGGGTGCCAG | + |
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Preference number: 5 (lower is better) Translates to: LQQSLIKKMPPDMLTGQARSSGR*GSWGCQ Trigger: CTGGCACCCCCATGAACCCAATCTTCCAGAAGAGCG...AGCTTGACCAGTCAGCATGTCTGGGGGCATTTTCTTGATTAATGATTGTTGTAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR CAA 90 bp | TTCATAGAAAGAAACCAGGGCAAGACCCTGGGGCAGAAACCTGAGGGCAGAGATGATTCCAGTAAACTATaGAAACACACCGCTCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: FIERNQGKTLGQKPEGRDDSSKL*KHTALL Trigger: CAGAAGAGCGGTGTGTTTCAATAGTTTACTGGAATC...ATCTCTGCCCTCAGGTTTCTGCCCCAGGGTCTTGCCCTGGTTTCTTTCTATGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR CAA 90 bp | CAAGTAACAGCAGTTCATAGAAAGAAACCAGGGCAAGACCCTGGGGCAGAAACCAGTATCATCGATCCATaGCCATTTGCCATTACCTTG | + |
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Preference number: 5 (lower is better) Translates to: QVTAVHRKKPGQDPGAETSIIDP*PFAITL Trigger: CAAGGTAATGGCAAATGGCAATGGATCGATGATACT...GGTTTCTGCCCCAGGGTCTTGCCCTGGTTTCTTTCTATGAACTGCTGTTACTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR CAA 90 bp | CAAGTAACAGCAGTTCATAGAAAGAAACCAGGGCAAGACCCTGGGGCAGAAACCAAATTGGTAAGTCACTaGGGATTGTCTTTCCTGCAC | + |
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Preference number: 5 (lower is better) Translates to: QVTAVHRKKPGQDPGAETKLVSH*GLSFLH Trigger: GTGCAGGAAAGACAATCCCAAGTGACTTACCAATTT...GGTTTCTGCCCCAGGGTCTTGCCCTGGTTTCTTTCTATGAACTGCTGTTACTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117130.8 |
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| CDS-3UTR CAA 90 bp | ATAGTGGCTAGGAAAAGAACGGCCTCTGTCAGATGTACAGGCCAAGAAGTTATGAGTATCATCGATCCATaGCCATTTGCCATTACCTTG | + |
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Preference number: 5 (lower is better) Translates to: IVARKRTASVRCTGQEVMSIIDP*PFAITL Trigger: CAAGGTAATGGCAAATGGCAATGGATCGATGATACT...CATAACTTCTTGGCCTGTACATCTGACAGAGGCCGTTCTTTTCCTAGCCACTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR CAA 90 bp | ATAGTGGCTAGGAAAAGAACGGCCTCTGTCAGATGTACAGGCCAAGAAGTTATGGATTCCAGTAAACTATaGAAACACACCGCTCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: IVARKRTASVRCTGQEVMDSSKL*KHTALL Trigger: CAGAAGAGCGGTGTGTTTCAATAGTTTACTGGAATC...CATAACTTCTTGGCCTGTACATCTGACAGAGGCCGTTCTTTTCCTAGCCACTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR CAA 90 bp | GCTTACCACCTGGACCCTCTTACAACAATCATTAATCAAGAAAATGCCCCCAGAAGTATCATCGATCCATaGCCATTTGCCATTACCTTG | + |
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Preference number: 5 (lower is better) Translates to: AYHLDPLTTIINQENAPRSIIDP*PFAITL Trigger: CAAGGTAATGGCAAATGGCAATGGATCGATGATACT...TCTGGGGGCATTTTCTTGATTAATGATTGTTGTAAGAGGGTCCAGGTGGTAAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024118.11 ENSMUST00000112554.9 ENSMUST00000117130.8 |
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| CDS-3UTR CAA 90 bp | ATAGTGGCTAGGAAAAGAACGGCCTCTGTCAGATGTACAGGCCAAGAAGTTATGCTGGTCCATAATAAATaGGTAAGTCACTTGGGATTG | + |
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Preference number: 5 (lower is better) Translates to: IVARKRTASVRCTGQEVMLVHNK*VSHLGL Trigger: CAATCCCAAGTGACTTACCAATTTATTATGGACCAG...CATAACTTCTTGGCCTGTACATCTGACAGAGGCCGTTCTTTTCCTAGCCACTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117130.8 |
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| CDS-3UTR CAA 90 bp | ATTGAATTGTGTTTACTATCACAGAAAACATCATTCCAGCCCCATTTCGAAGGACAGGACAGCCAAGGCTaGTTACACAGAAAAACTCTG | + |
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Preference number: 5 (lower is better) Translates to: IELCLLSQKTSFQPHFEGQDSQG*LHRKTL Trigger: CAGAGTTTTTCTGTGTAACAAGCCTTGGCTGTCCTG...TCCTTCGAAATGGGGCTGGAATGATGTTTTCTGTGATAGTAAACACAATTCAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000151714.4 |
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