Pregenerated sensors for CLEC4E (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030142Ensembl transcript IDs: ENSMUST00000032239.11, ENSMUST00000176096.2, ENSMUST00000177367.8
Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCTGCTGGAGCAGGTGGAGTGTGGGATGTGGTTGCCGAGAGGCTATaGTCCAGTAGAAAGCCTTATACTCAAGTGCATTCAGGAAGCACT | + |
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Preference number: 1 (lower is better) Translates to: PAGAGGVWDVVAERL*SSRKPYTQVHSGST Trigger: AGTGCTTCCTGAATGCACTTGAGTATAAGGCTTTCTACTGGACCATAGCCTCTCGGCAACCACATCCCACACTCCACCTGCTCCAGCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR CCA 90 bp | AGGATGGTCAATTGGCTATTGTTGCCTGCTGGAGCAGGTGGAGTGTaGGATGTGGTTGCCGAGAGGCTATGGTCCAGTAGAAAGCCTTAT | + |
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Preference number: 1 (lower is better) Translates to: RMVNWLLLPAGAGGV*DVVAERLWSSRKPY Trigger: ATAAGGCTTTCTACTGGACCATAGCCTCTCGGCAACCACATCCCACACTCCACCTGCTCCAGCAGGCAACAATAGCCAATTGACCATCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR CCA 90 bp | GGCATGGAGCTCATGAAATTCCATCCTCAGCTGAGGATGGTCAATTaGCTATTGTTGCCTGCTGGAGCAGGTGGAGTGTGGGATGTGGTT | + |
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Preference number: 1 (lower is better) Translates to: GMELMKFHPQLRMVN*LLLPAGAGGVWDVV Trigger: AACCACATCCCACACTCCACCTGCTCCAGCAGGCAACAATAGCCAATTGACCATCCTCAGCTGAGGATGGAATTTCATGAGCTCCATGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR CCA 90 bp | TCAATTGGCTATTGTTGCCTGCTGGAGCAGGTGGAGTGTGGGATGTaGTTGCCGAGAGGCTATGGTCCAGTAGAAAGCCTTATACTCAAG | + |
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Preference number: 1 (lower is better) Translates to: SIGYCCLLEQVECGM*LPRGYGPVESLILK Trigger: CTTGAGTATAAGGCTTTCTACTGGACCATAGCCTCTCGGCAACCACATCCCACACTCCACCTGCTCCAGCAGGCAACAATAGCCAATTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR GCA 90 bp | CCATGCCATTCTCCCAAGCGGCAGGTAAGTTTAAAGACTCAAAGATaGATCTTCCTCACTGTTGGAGAACACAGAAGTGATCTATGTACT | + |
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Preference number: 1 (lower is better) Translates to: PCHSPKRQVSLKTQR*IFLTVGEHRSDLCT Trigger: AGTACATAGATCACTTCTGTGTTCTCCAACAGTGAGGAAGATGCATCTTTGAGTCTTTAAACTTACCTGCCGCTTGGGAGAATGGCATGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR TCA 90 bp | AACCTACTGAGCAGGTTCTACTTGCGCAGTAGATACAAGTACAGGTaGAATCCAGTTTATAGAAGAGAACACAGAGAAAATGGGGCTCCA | + |
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Preference number: 1 (lower is better) Translates to: NLLSRFYLRSRYKYR*NPVYRREHRENGAP Trigger: TGGAGCCCCATTTTCTCTGTGTTCTCTTCTATAAACTGGATTTCACCTGTACTTGTATCTACTGCGCAAGTAGAACCTGCTCAGTAGGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR CCA 90 bp | CAATATAATAAAGGTAACATAAAACAACCCAAATTCCAGCATGAATaGCATGGAGCTCATGAAATTCCATCCTCAGCTGAGGATGGTCAA | + |
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Preference number: 1 (lower is better) Translates to: QYNKGNIKQPKFQHE*HGAHEIPSSAEDGQ Trigger: TTGACCATCCTCAGCTGAGGATGGAATTTCATGAGCTCCATGCCATTCATGCTGGAATTTGGGTTGTTTTATGTTACCTTTATTATATTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR TCA 90 bp | AAGGACAGAAACCACATGGTCTTTGTGATTTCTTTGTGTGCCCTTTaGTGGAATTCAGAATCTTTTAATATGAAGCTCCTAGAGATTCTA | + |
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Preference number: 1 (lower is better) Translates to: KDRNHMVFVISLCAL*WNSESFNMKLLEIL Trigger: TAGAATCTCTAGGAGCTTCATATTAAAAGATTCTGAATTCCATCAAAGGGCACACAAAGAAATCACAAAGACCATGTGGTTTCTGTCCTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR GCA 90 bp | AGGGCTTTGTCTGGAAGAAACATGGTCTATATTGACAGAATATCATaGAATAAATGCAGTCCTGAGACAGAAAAATGTGAACATGAATTT | + |
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Preference number: 1 (lower is better) Translates to: RALSGRNMVYIDRIS*NKCSPETEKCEHEF Trigger: AAATTCATGTTCACATTTTTCTGTCTCAGGACTGCATTTATTGCATGATATTCTGTCAATATAGACCATGTTTCTTCCAGACAAAGCCCT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR CAA 90 bp | CTCATGAAATTCCATCCTCAGCTGAGGATGGTCAATTGGCTATTGTaGCCTGCTGGAGCAGGTGGAGTGTGGGATGTGGTTGCCGAGAGG | + |
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Preference number: 2 (lower is better) Translates to: LMKFHPQLRMVNWLL*PAGAGGVWDVVAER Trigger: CCTCTCGGCAACCACATCCCACACTCCACCTGCTCCAGCAGGCAACAATAGCCAATTGACCATCCTCAGCTGAGGATGGAATTTCATGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR CAA 90 bp | GAGCTCATGAAATTCCATCCTCAGCTGAGGATGGTCAATTGGCTATaGTTGCCTGCTGGAGCAGGTGGAGTGTGGGATGTGGTTGCCGAG | + |
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Preference number: 2 (lower is better) Translates to: ELMKFHPQLRMVNWL*LPAGAGGVWDVVAE Trigger: CTCGGCAACCACATCCCACACTCCACCTGCTCCAGCAGGCAACAATAGCCAATTGACCATCCTCAGCTGAGGATGGAATTTCATGAGCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR CAA 90 bp | ATTGGCTATTGTTGCCTGCTGGAGCAGGTGGAGTGTGGGATGTGGTaGCCGAGAGGCTATGGTCCAGTAGAAAGCCTTATACTCAAGTGC | + |
|
Preference number: 2 (lower is better) Translates to: IGYCCLLEQVECGMW*PRGYGPVESLILKC Trigger: GCACTTGAGTATAAGGCTTTCTACTGGACCATAGCCTCTCGGCAACCACATCCCACACTCCACCTGCTCCAGCAGGCAACAATAGCCAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR CAA 90 bp | TGGCATGGAGCTCATGAAATTCCATCCTCAGCTGAGGATGGTCAATaGGCTATTGTTGCCTGCTGGAGCAGGTGGAGTGTGGGATGTGGT | + |
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Preference number: 2 (lower is better) Translates to: WHGAHEIPSSAEDGQ*AIVACWSRWSVGCG Trigger: ACCACATCCCACACTCCACCTGCTCCAGCAGGCAACAATAGCCAATTGACCATCCTCAGCTGAGGATGGAATTTCATGAGCTCCATGCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR-3UTR TCA 90 bp | AGTAGAAAGCCTTATACTCAAGTGCATTCAGGAAGCACTGAGCAGATAGAGTGGTGTGCAAGACAGATGTaGAAAGGAGAATCCCTTTCT | + |
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Preference number: 2 (lower is better) Translates to: SRKPYTQVHSGSTEQIEWCARQM*KGESLS Trigger: AGAAAGGGATTCTCCTTTTCACATCTGTCTTGCACA...CCACTCTATCTGCTCAGTGCTTCCTGAATGCACTTGAGTATAAGGCTTTCTACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR-3UTR TCA 90 bp | GGGCTTTGTCTGGAAGAAACATGGTCTATATTGACAGAATATCATGCAATAAATTGGAGATGTCCTTGCTaGAGGCCATGCCATTCTCCC | + |
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Preference number: 2 (lower is better) Translates to: GLCLEETWSILTEYHAINWRCPC*RPCHSP Trigger: GGGAGAATGGCATGGCCTTCAGCAAGGACATCTCCA...ATTTATTGCATGATATTCTGTCAATATAGACCATGTTTCTTCCAGACAAAGCCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR-3UTR TCA 90 bp | TCCAGTAGAAAGCCTTATACTCAAGTGCATTCAGGAAGCACTGAGCAGATAGAGGTTTATTACAATGTGTaGCTGCTGCTGAAGGTTCCT | + |
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Preference number: 2 (lower is better) Translates to: SSRKPYTQVHSGSTEQIEVYYNV*LLLKVP Trigger: AGGAACCTTCAGCAGCAGTCACACATTGTAATAAAC...CTCTATCTGCTCAGTGCTTCCTGAATGCACTTGAGTATAAGGCTTTCTACTGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR-3UTR GCA 90 bp | TCCAGTAGAAAGCCTTATACTCAAGTGCATTCAGGAAGCACTGAGCAGATAGAGCTTTATACAGACATCTaGTTTCTACCTGTTCCTTCA | + |
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Preference number: 2 (lower is better) Translates to: SSRKPYTQVHSGSTEQIELYTDI*FLPVPS Trigger: TGAAGGAACAGGTAGAAAGCAGATGTCTGTATAAAG...CTCTATCTGCTCAGTGCTTCCTGAATGCACTTGAGTATAAGGCTTTCTACTGGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR-3UTR CCA 90 bp | ATCCTAGAGATGGAGGGATGTCACAATATATACAAGTCAAGGAGTGTAATGAACAGGTCTTTCAGGTTATaGCAAGACCATCAGACAATG | + |
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Preference number: 2 (lower is better) Translates to: ILEMEGCHNIYKSRSVMNRSFRL*QDHQTM Trigger: CATTGTCTGATGGTCTTGCCATAACCTGAAAGACCT...GTTCATTACACTCCTTGACTTGTATATATTGTGACATCCCTCCATCTCTAGGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR CAA 90 bp | TGTTTATTACAATGTGTGACTGCTGCTGAAGGTTCCTTTAGGGCTTaGTCTGGAAGAAACATGGTCTATATTGACAGAATATCATGCAAT | + |
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Preference number: 2 (lower is better) Translates to: CLLQCVTAAEGSFRA*SGRNMVYIDRISCN Trigger: ATTGCATGATATTCTGTCAATATAGACCATGTTTCTTCCAGACAAAGCCCTAAAGGAACCTTCAGCAGCAGTCACACATTGTAATAAACA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR-3UTR TCA 90 bp | GGGCTTTGTCTGGAAGAAACATGGTCTATATTGACAGAATATCATGCAATAAATCATGTGCAGTCCTTCTaGTGCCTGATAGATATTTTC | + |
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Preference number: 2 (lower is better) Translates to: GLCLEETWSILTEYHAINHVQSF*CLIDIF Trigger: GAAAATATCTATCAGGCATCAGAAGGACTGCACATG...ATTTATTGCATGATATTCTGTCAATATAGACCATGTTTCTTCCAGACAAAGCCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR-3UTR GCA 90 bp | GGGCTTTGTCTGGAAGAAACATGGTCTATATTGACAGAATATCATGCAATAAATTTAAAGACTCAAAGATaGATCTTCCTCACTGTTGGA | + |
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Preference number: 2 (lower is better) Translates to: GLCLEETWSILTEYHAINLKTQR*IFLTVG Trigger: TCCAACAGTGAGGAAGATGCATCTTTGAGTCTTTAA...ATTTATTGCATGATATTCTGTCAATATAGACCATGTTTCTTCCAGACAAAGCCC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR CCA 72 bp | TCAGCTGAGGATGGTCAATTGGCTATTGTTGCCTGCTaGAGCAGGTGGAGTGTGGGATGTGGTTGCCGAGAG | + |
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Preference number: 3 (lower is better) Translates to: SAEDGQLAIVAC*SRWSVGCGCRE Trigger: CTCTCGGCAACCACATCCCACACTCCACCTGCTCCAGCAGGCAACAATAGCCAATTGACCATCCTCAGCTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR CCA 72 bp | TATTGTTGCCTGCTGGAGCAGGTGGAGTGTGGGATGTaGTTGCCGAGAGGCTATGGTCCAGTAGAAAGCCTT | + |
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Preference number: 3 (lower is better) Translates to: YCCLLEQVECGM*LPRGYGPVESL Trigger: AAGGCTTTCTACTGGACCATAGCCTCTCGGCAACCACATCCCACACTCCACCTGCTCCAGCAGGCAACAATA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR CCA 72 bp | AATTGGCTATTGTTGCCTGCTGGAGCAGGTGGAGTGTaGGATGTGGTTGCCGAGAGGCTATGGTCCAGTAGA | + |
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Preference number: 3 (lower is better) Translates to: NWLLLPAGAGGV*DVVAERLWSSR Trigger: TCTACTGGACCATAGCCTCTCGGCAACCACATCCCACACTCCACCTGCTCCAGCAGGCAACAATAGCCAATT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR-3UTR CAA 90 bp | ATTGTTGCCTGCTGGAGCAGGTGGAGTGTGGGATGTGGTTGCCGAGAGGCTATGGAGGAGCACATGAAATaGGGAGGGAAAATCAGTGAG | + |
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Preference number: 3 (lower is better) Translates to: IVACWSRWSVGCGCREAMEEHMK*GGKISE Trigger: CTCACTGATTTTCCCTCCCAATTTCATGTGCTCCTC...CATAGCCTCTCGGCAACCACATCCCACACTCCACCTGCTCCAGCAGGCAACAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR TCA 72 bp | AGTTTGACCGGCCTTTCCATATGGAGATGTCCTTGCTaGAGGCCATGCCATTCTCCCAAGCGGCAGGTAAGT | + |
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Preference number: 3 (lower is better) Translates to: SLTGLSIWRCPC*RPCHSPKRQVS Trigger: ACTTACCTGCCGCTTGGGAGAATGGCATGGCCTTCAGCAAGGACATCTCCATATGGAAAGGCCGGTCAAACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR CCA 72 bp | GCAGGTGGAGTGTGGGATGTGGTTGCCGAGAGGCTATaGTCCAGTAGAAAGCCTTATACTCAAGTGCATTCA | + |
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Preference number: 3 (lower is better) Translates to: AGGVWDVVAERL*SSRKPYTQVHS Trigger: TGAATGCACTTGAGTATAAGGCTTTCTACTGGACCATAGCCTCTCGGCAACCACATCCCACACTCCACCTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR CCA 72 bp | CTCATGAAATTCCATCCTCAGCTGAGGATGGTCAATTaGCTATTGTTGCCTGCTGGAGCAGGTGGAGTGTGG | + |
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Preference number: 3 (lower is better) Translates to: LMKFHPQLRMVN*LLLPAGAGGVW Trigger: CCACACTCCACCTGCTCCAGCAGGCAACAATAGCCAATTGACCATCCTCAGCTGAGGATGGAATTTCATGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR TCA 72 bp | AGTGGACTAGATCACAATCTGTTAGGAACTGAAGTTTaGCCGGCCTTTCCATATGGAGATGTCCTTGCTGAA | + |
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Preference number: 3 (lower is better) Translates to: SGLDHNLLGTEV*PAFPYGDVLAE Trigger: TTCAGCAAGGACATCTCCATATGGAAAGGCCGGTCAAACTTCAGTTCCTAACAGATTGTGATCTAGTCCACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR GCA 72 bp | TCTCCCAAGCGGCAGGTAAGTTTAAAGACTCAAAGATaGATCTTCCTCACTGTTGGAGAACACAGAAGTGAT | + |
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Preference number: 3 (lower is better) Translates to: SPKRQVSLKTQR*IFLTVGEHRSD Trigger: ATCACTTCTGTGTTCTCCAACAGTGAGGAAGATGCATCTTTGAGTCTTTAAACTTACCTGCCGCTTGGGAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR-3UTR CAA 90 bp | TGCGCAGTAGATACAAGTACAGGTGAAATCCAGTTTATAGAAGAGAACACAGAGGCATCTTCCTCACTGTaGGAGAACACAGAAGTGATC | + |
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Preference number: 3 (lower is better) Translates to: CAVDTSTGEIQFIEENTEASSSL*ENTEVI Trigger: GATCACTTCTGTGTTCTCCAACAGTGAGGAAGATGC...CTCTGTGTTCTCTTCTATAAACTGGATTTCACCTGTACTTGTATCTACTGCGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR-3UTR CAA 90 bp | ATCCTAGAGATGGAGGGATGTCACAATATATACAAGTCAAGGAGTGTAATGAACCATATGGAGATGTCCTaGCTGAAGGCCATGCCATTC | + |
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Preference number: 3 (lower is better) Translates to: ILEMEGCHNIYKSRSVMNHMEMS*LKAMPF Trigger: GAATGGCATGGCCTTCAGCAAGGACATCTCCATATG...GTTCATTACACTCCTTGACTTGTATATATTGTGACATCCCTCCATCTCTAGGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR GCA 72 bp | AGAGGTCTTTCAGGTTATGGCAAGACCATCAGACAATaGTGTGGACTTTTAGCAATGGGAACAAGTCATTTT | + |
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Preference number: 3 (lower is better) Translates to: RGLSGYGKTIRQ*CGLLAMGTSHF Trigger: AAAATGACTTGTTCCCATTGCTAAAAGTCCACAGCATTGTCTGATGGTCTTGCCATAACCTGAAAGACCTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR CCA 72 bp | AAAGGTAACATAAAACAACCCAAATTCCAGCATGAATaGCATGGAGCTCATGAAATTCCATCCTCAGCTGAG | + |
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Preference number: 3 (lower is better) Translates to: KGNIKQPKFQHE*HGAHEIPSSAE Trigger: CTCAGCTGAGGATGGAATTTCATGAGCTCCATGCCATTCATGCTGGAATTTGGGTTGTTTTATGTTACCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR TCA 72 bp | TTTTCCTACTCAAGGATACATGTTTATTACAATGTGTaGCTGCTGCTGAAGGTTCCTTTAGGGCTTTGTCTG | + |
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Preference number: 3 (lower is better) Translates to: FSYSRIHVYYNV*LLLKVPLGLCL Trigger: CAGACAAAGCCCTAAAGGAACCTTCAGCAGCAGTCACACATTGTAATAAACATGTATCCTTGAGTAGGAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR TCA 72 bp | CAAATAAACCCAAGGACAGAAACCACATGGTCTTTGTaGTTTCTTTGTGTGCCCTTTGATGGAATTCAGAAT | + |
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Preference number: 3 (lower is better) Translates to: QINPRTETTWSL*FLCVPFDGIQN Trigger: ATTCTGAATTCCATCAAAGGGCACACAAAGAAATCACAAAGACCATGTGGTTTCTGTCCTTGGGTTTATTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR CCA 72 bp | CTGAAGGTTCCTTTAGGGCTTTGTCTGGAAGAAACATaGTCTATATTGACAGAATATCATGCAATAAATGCA | + |
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Preference number: 3 (lower is better) Translates to: LKVPLGLCLEET*SILTEYHAINA Trigger: TGCATTTATTGCATGATATTCTGTCAATATAGACCATGTTTCTTCCAGACAAAGCCCTAAAGGAACCTTCAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR TCA 72 bp | AGAATCCCTTTCTTCTTGTTGCATTTGTTAGAGAATTaGTCTGTACAGTCTAAAAAGAGGTCTTTCAGGTTA | + |
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Preference number: 3 (lower is better) Translates to: RIPFFLLHLLEN*SVQSKKRSFRL Trigger: TAACCTGAAAGACCTCTTTTTAGACTGTACAGATCAATTCTCTAACAAATGCAACAAGAAGAAAGGGATTCT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR GCA 72 bp | TCTGGAAGAAACATGGTCTATATTGACAGAATATCATaGAATAAATGCAGTCCTGAGACAGAAAAATGTGAA | + |
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Preference number: 3 (lower is better) Translates to: SGRNMVYIDRIS*NKCSPETEKCE Trigger: TTCACATTTTTCTGTCTCAGGACTGCATTTATTGCATGATATTCTGTCAATATAGACCATGTTTCTTCCAGA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR CAA 72 bp | GCTCAGGGACTCTGTGAAAGGTGTATCATCCACCCATaGCCACTGACCCTCCACCACCTGGTCTGTCAGTCC | + |
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Preference number: 4 (lower is better) Translates to: AQGLCERCIIHP*PLTLHHLVCQS Trigger: GGACTGACAGACCAGGTGGTGGAGGGTCAGTGGCAATGGGTGGATGATACACCTTTCACAGAGTCCCTGAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176096.2 |
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| 3UTR CAA 72 bp | TGTTGCCTGCTGGAGCAGGTGGAGTGTGGGATGTGGTaGCCGAGAGGCTATGGTCCAGTAGAAAGCCTTATA | + |
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Preference number: 4 (lower is better) Translates to: CCLLEQVECGMW*PRGYGPVESLI Trigger: TATAAGGCTTTCTACTGGACCATAGCCTCTCGGCAACCACATCCCACACTCCACCTGCTCCAGCAGGCAACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| CDS-3UTR CCA 90 bp | ATTGTTGCCTGCTGGAGCAGGTGGAGTGTGGGATGTGGTTGCCGAGAGGCTATGCCAAAACTATATTGTTaGGCTCCCCAGCATCCCAGA | + |
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Preference number: 4 (lower is better) Translates to: IVACWSRWSVGCGCREAMPKLYC*APQHPR Trigger: TCTGGGATGCTGGGGAGCCCAACAATATAGTTTTGG...CATAGCCTCTCGGCAACCACATCCCACACTCCACCTGCTCCAGCAGGCAACAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR CAA 72 bp | TTCCATCCTCAGCTGAGGATGGTCAATTGGCTATTGTaGCCTGCTGGAGCAGGTGGAGTGTGGGATGTGGTT | + |
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Preference number: 4 (lower is better) Translates to: FHPQLRMVNWLL*PAGAGGVWDVV Trigger: AACCACATCCCACACTCCACCTGCTCCAGCAGGCAACAATAGCCAATTGACCATCCTCAGCTGAGGATGGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| CDS-3UTR CCA 90 bp | TGTATCATCCACCCATTGCCACTGACCCTCCACCACCTGGTCTGTCAGTCCAATGTCCAGGAGAGCACTTaGGAGTTTTTGAAGCATCCT | + |
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Preference number: 4 (lower is better) Translates to: CIIHPLPLTLHHLVCQSNVQEST*EFLKHP Trigger: AGGATGCTTCAAAAACTCCCAAGTGCTCTCCTGGAC...ATTGGACTGACAGACCAGGTGGTGGAGGGTCAGTGGCAATGGGTGGATGATACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000176096.2 |
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| 3UTR CAA 72 bp | AAATTCCATCCTCAGCTGAGGATGGTCAATTGGCTATaGTTGCCTGCTGGAGCAGGTGGAGTGTGGGATGTG | + |
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Preference number: 4 (lower is better) Translates to: KFHPQLRMVNWL*LPAGAGGVWDV Trigger: CACATCCCACACTCCACCTGCTCCAGCAGGCAACAATAGCCAATTGACCATCCTCAGCTGAGGATGGAATTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| 3UTR CAA 72 bp | GCTCATGAAATTCCATCCTCAGCTGAGGATGGTCAATaGGCTATTGTTGCCTGCTGGAGCAGGTGGAGTGTG | + |
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Preference number: 4 (lower is better) Translates to: AHEIPSSAEDGQ*AIVACWSRWSV Trigger: CACACTCCACCTGCTCCAGCAGGCAACAATAGCCAATTGACCATCCTCAGCTGAGGATGGAATTTCATGAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| CDS-3UTR TCA 90 bp | CCATTGCCACTGACCCTCCACCACCTGGTCTGTCAGTCCAATATAAAACTCTTTGCACTTGGGAGTTTTTaGAGCATCCTCTCTCTGTGT | + |
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Preference number: 4 (lower is better) Translates to: PLPLTLHHLVCQSNIKLFALGSF*SILSLC Trigger: ACACAGAGAGAGGATGCTTCAAAAACTCCCAAGTGC...AAAGAGTTTTATATTGGACTGACAGACCAGGTGGTGGAGGGTCAGTGGCAATGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000176096.2 |
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| CDS-3UTR TCA 90 bp | TGTTTATTACAATGTGTGACTGCTGCTGAAGGTTCCTTTAGGGCTTTGTCTGGATCGATAACCACCAGGTaGGCCCCCATGTCTGAGCAA | + |
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Preference number: 4 (lower is better) Translates to: CLLQCVTAAEGSFRALSGSITTR*APMSEQ Trigger: TTGCTCAGACATGGGGGCTCACCTGGTGGTTATCGA...TCCAGACAAAGCCCTAAAGGAACCTTCAGCAGCAGTCACACATTGTAATAAACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| CDS-3UTR TCA 90 bp | GTTGTTATTACATTCACTCTTGTTCTTCTTCATGCATGTAAGCCATGTCCCTTGTCCACCCATTGCCACTaGCCCTCCACCACCTGGTCT | + |
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Preference number: 4 (lower is better) Translates to: VVITFTLVLLHACKPCPLSTHCH*PSTTWS Trigger: AGACCAGGTGGTGGAGGGTCAGTGGCAATGGGTGGA...CAAGGGACATGGCTTACATGCATGAAGAAGAACAAGAGTGAATGTAATAACAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| CDS-3UTR TCA 90 bp | AGTAGAAAGCCTTATACTCAAGTGCATTCAGGAAGCACTGAGCAGATAGAGTGGGTTCTTCCTGGAGTTTaGAGAGTCCCTTATGGTGGC | + |
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Preference number: 4 (lower is better) Translates to: SRKPYTQVHSGSTEQIEWVLPGV*RVPYGG Trigger: GCCACCATAAGGGACTCTTCAAACTCCAGGAAGAAC...CCACTCTATCTGCTCAGTGCTTCCTGAATGCACTTGAGTATAAGGCTTTCTACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| CDS-3UTR CCA 90 bp | GATACATGTTTATTACAATGTGTGACTGCTGCTGAAGGTTCCTTTAGGGCTTTGGTCCAGGAGAGCACTTaGGAGTTTTTGAAGCATCCT | + |
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Preference number: 4 (lower is better) Translates to: DTCLLQCVTAAEGSFRALVQEST*EFLKHP Trigger: AGGATGCTTCAAAAACTCCCAAGTGCTCTCCTGGAC...CAAAGCCCTAAAGGAACCTTCAGCAGCAGTCACACATTGTAATAAACATGTATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| CDS-3UTR TCA 90 bp | GTTGTTATTACATTCACTCTTGTTCTTCTTCATGCATGTAAGCCATGTCCCTTGGCACTTGGGAGTTTTTaGAGCATCCTCTCTCTGTGT | + |
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Preference number: 4 (lower is better) Translates to: VVITFTLVLLHACKPCPLALGSF*SILSLC Trigger: ACACAGAGAGAGGATGCTTCAAAAACTCCCAAGTGC...CAAGGGACATGGCTTACATGCATGAAGAAGAACAAGAGTGAATGTAATAACAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| CDS-3UTR CCA 90 bp | TTGACAGAATATCATGCAATAAATGCAGTCCTGAGACAGAAAAATGTGAACATGTTGAAGAGTCCCTTATaGTGGCACAGTCCTCCACCA | + |
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Preference number: 4 (lower is better) Translates to: LTEYHAINAVLRQKNVNMLKSPL*WHSPPP Trigger: TGGTGGAGGACTGTGCCACCATAAGGGACTCTTCAA...CATGTTCACATTTTTCTGTCTCAGGACTGCATTTATTGCATGATATTCTGTCAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| CDS-3UTR CCA 90 bp | GGATTTTGGTTGTTATTACATTCACTCTTGTTCTTCTTCATGCATGTAAGCCATAAGAGTCCCTTATGGTaGCACAGTCCTCCACCAAAA | + |
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Preference number: 4 (lower is better) Translates to: GFWLLLHSLLFFFMHVSHKSPLW*HSPPPK Trigger: TTTTGGTGGAGGACTGTGCCACCATAAGGGACTCTT...ATGGCTTACATGCATGAAGAAGAACAAGAGTGAATGTAATAACAACCAAAATCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| CDS-3UTR CCA 90 bp | TTGACAGAATATCATGCAATAAATGCAGTCCTGAGACAGAAAAATGTGAACATGCAGAGGACTTATTTCTaGCATCTCACAAATCCAAGG | + |
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Preference number: 4 (lower is better) Translates to: LTEYHAINAVLRQKNVNMQRTYF*HLTNPR Trigger: CCTTGGATTTGTGAGATGCCAGAAATAAGTCCTCTG...CATGTTCACATTTTTCTGTCTCAGGACTGCATTTATTGCATGATATTCTGTCAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| CDS TCA 90 bp | GGATGGAGGCCCCGGCTATCGTCCAGGAGAGCACTTGGGAGTTTTTaGAGCATCCTCTCTCTGTGTGGTGGGATGCAGGCGATTTGGTTG | + |
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Preference number: 5 (lower is better) Translates to: GWRPRLSSRRALGSF*SILSLCGGMQAIWL Trigger: CAACCAAATCGCCTGCATCCCACCACACAGAGAGAGGATGCTTCAAAAACTCCCAAGTGCTCTCCTGGACGATAGCCGGGGCCTCCATCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000032239.11 ENSMUST00000176096.2 ENSMUST00000177367.8 |
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| CDS CCA 90 bp | CTGAGAAACAGGATGGAGGCCCCGGCTATCGTCCAGGAGAGCACTTaGGAGTTTTTGAAGCATCCTCTCTCTGTGTGGTGGGATGCAGGC | + |
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Preference number: 5 (lower is better) Translates to: LRNRMEAPAIVQEST*EFLKHPLSVWWDAG Trigger: GCCTGCATCCCACCACACAGAGAGAGGATGCTTCAAAAACTCCCAAGTGCTCTCCTGGACGATAGCCGGGGCCTCCATCCTGTTTCTCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000032239.11 ENSMUST00000176096.2 ENSMUST00000177367.8 |
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| CDS-3UTR CAA 90 bp | CAGGGACTCTGTGAAAGGTGTATCATCCACCCATTGCCACTGACCCTCCACCACAGCACTTGGGAGTTTTaGAAGCATCCTCTCTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: QGLCERCIIHPLPLTLHHSTWEF*KHPLSV Trigger: CACAGAGAGAGGATGCTTCAAAAACTCCCAAGTGCT...GTGGTGGAGGGTCAGTGGCAATGGGTGGATGATACACCTTTCACAGAGTCCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176096.2 |
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| CDS-3UTR CAA 90 bp | TTGCCACTGACCCTCCACCACCTGGTCTGTCAGTCCAATATAAAACTCTTTCCTCGTCCAGGAGAGCACTaGGGAGTTTTTGAAGCATCC | + |
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Preference number: 5 (lower is better) Translates to: LPLTLHHLVCQSNIKLFPRPGEH*GVFEAS Trigger: GGATGCTTCAAAAACTCCCAAGTGCTCTCCTGGACG...AGGAAAGAGTTTTATATTGGACTGACAGACCAGGTGGTGGAGGGTCAGTGGCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000176096.2 |
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| CDS TCA 90 bp | CGAAAAAGGAATTCCTGCTCTTCCTGTGTGTCGATAACCACCAGGTaGGCCCCCATGTCTGAGCAATTCTTTAAACTTGATGACCAGGTC | + |
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Preference number: 5 (lower is better) Translates to: RKRNSCSSCVSITTR*APMSEQFFKLDDQV Trigger: GACCTGGTCATCAAGTTTAAAGAATTGCTCAGACATGGGGGCTCACCTGGTGGTTATCGACACACAGGAAGAGCAGGAATTCCTTTTTCG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000032239.11 ENSMUST00000177367.8 |
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| CDS CCA 90 bp | AGGGTATATCATTCCAGTTCTTCCTGGAGTTTGAAGAGTCCCTTATaGTGGCACAGTCCTCCACCAAAACTATATTGTTGGGCTCCCCAG | + |
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Preference number: 5 (lower is better) Translates to: RVYHSSSSWSLKSPL*WHSPPPKLYCWAPQ Trigger: CTGGGGAGCCCAACAATATAGTTTTGGTGGAGGACTGTGCCACCATAAGGGACTCTTCAAACTCCAGGAAGAACTGGAATGATATACCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032239.11 ENSMUST00000177367.8 |
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| CDS CCA 90 bp | TCCAAGGCATACTGTAGAAACAGGGTATATCATTCCAGTTCTTCCTaGAGTTTGAAGAGTCCCTTATGGTGGCACAGTCCTCCACCAAAA | + |
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Preference number: 5 (lower is better) Translates to: SKAYCRNRVYHSSSS*SLKSPLWWHSPPPK Trigger: TTTTGGTGGAGGACTGTGCCACCATAAGGGACTCTTCAAACTCCAGGAAGAACTGGAATGATATACCCTGTTTCTACAGTATGCCTTGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032239.11 ENSMUST00000177367.8 |
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| CDS-3UTR CAA 90 bp | TGCGCAGTAGATACAAGTACAGGTGAAATCCAGTTTATAGAAGAGAACACAGAGCGTCCAGGAGAGCACTaGGGAGTTTTTGAAGCATCC | + |
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Preference number: 5 (lower is better) Translates to: CAVDTSTGEIQFIEENTERPGEH*GVFEAS Trigger: GGATGCTTCAAAAACTCCCAAGTGCTCTCCTGGACG...CTCTGTGTTCTCTTCTATAAACTGGATTTCACCTGTACTTGTATCTACTGCGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| CDS TCA 90 bp | AGCTCCTTAATATTTCTATGTGGCTGTAAGTTCTGCCCGGAAATTTaGGAGCTGCGATATGTTACGACACATCTGGTGATGAAACAGCCA | + |
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Preference number: 5 (lower is better) Translates to: SSLIFLCGCKFCPEI*ELRYVTTHLVMKQP Trigger: TGGCTGTTTCATCACCAGATGTGTCGTAACATATCGCAGCTCTCAAATTTCCGGGCAGAACTTACAGCCACATAGAAATATTAAGGAGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| CDS-3UTR CAA 90 bp | GGGCTTTGTCTGGAAGAAACATGGTCTATATTGACAGAATATCATGCAATAAATTGTATCATCCACCCATaGCCACTGACCCTCCACCAC | + |
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Preference number: 5 (lower is better) Translates to: GLCLEETWSILTEYHAINCIIHP*PLTLHH Trigger: GTGGTGGAGGGTCAGTGGCAATGGGTGGATGATACA...ATTTATTGCATGATATTCTGTCAATATAGACCATGTTTCTTCCAGACAAAGCCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| CDS-3UTR CAA 90 bp | ATGAACCATGCAAATAAACCCAAGGACAGAAACCACATGGTCTTTGTGATTTCTTCCACCAAAACTATATaGTTGGGCTCCCCAGCATCC | + |
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Preference number: 5 (lower is better) Translates to: MNHANKPKDRNHMVFVISSTKTI*LGSPAS Trigger: GGATGCTGGGGAGCCCAACAATATAGTTTTGGTGGA...AGAAATCACAAAGACCATGTGGTTTCTGTCCTTGGGTTTATTTGCATGGTTCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| CDS-3UTR CAA 90 bp | ACAGATGTGCAAGACAGATGTGAAAAGGAGAATCCCTTTCTTCTTGTTGCATTTAGCACTTGGGAGTTTTaGAAGCATCCTCTCTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: TDVQDRCEKENPFLLVAFSTWEF*KHPLSV Trigger: CACAGAGAGAGGATGCTTCAAAAACTCCCAAGTGCT...AAATGCAACAAGAAGAAAGGGATTCTCCTTTTCACATCTGTCTTGCACATCTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| CDS-3UTR CAA 90 bp | TGCGCAGTAGATACAAGTACAGGTGAAATCCAGTTTATAGAAGAGAACACAGAGAGCAATTCTTTAAACTaGATGACCAGGTCAAGGTTG | + |
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Preference number: 5 (lower is better) Translates to: CAVDTSTGEIQFIEENTESNSLN*MTRSRL Trigger: CAACCTTGACCTGGTCATCAAGTTTAAAGAATTGCT...CTCTGTGTTCTCTTCTATAAACTGGATTTCACCTGTACTTGTATCTACTGCGCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| CDS-3UTR CAA 90 bp | GGGCTTTGTCTGGAAGAAACATGGTCTATATTGACAGAATATCATGCAATAAATAAAGGACAGCAATTCTaGACTGAACCTGATGCCTCA | + |
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Preference number: 5 (lower is better) Translates to: GLCLEETWSILTEYHAINKGQQF*TEPDAS Trigger: TGAGGCATCAGGTTCAGTCAAGAATTGCTGTCCTTT...ATTTATTGCATGATATTCTGTCAATATAGACCATGTTTCTTCCAGACAAAGCCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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| CDS TCA 72 bp | CCCCGGCTATCGTCCAGGAGAGCACTTGGGAGTTTTTaGAGCATCCTCTCTCTGTGTGGTGGGATGCAGGCG | + |
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Preference number: 6 (lower is better) Translates to: PRLSSRRALGSF*SILSLCGGMQA Trigger: CGCCTGCATCCCACCACACAGAGAGAGGATGCTTCAAAAACTCCCAAGTGCTCTCCTGGACGATAGCCGGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000032239.11 ENSMUST00000176096.2 ENSMUST00000177367.8 |
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| CDS CAA 72 bp | GCCCCGGCTATCGTCCAGGAGAGCACTTGGGAGTTTTaGAAGCATCCTCTCTCTGTGTGGTGGGATGCAGGC | + |
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Preference number: 6 (lower is better) Translates to: APAIVQESTWEF*KHPLSVWWDAG Trigger: GCCTGCATCCCACCACACAGAGAGAGGATGCTTCAAAAACTCCCAAGTGCTCTCCTGGACGATAGCCGGGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000032239.11 ENSMUST00000176096.2 ENSMUST00000177367.8 |
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| CDS CCA 72 bp | AGGATGGAGGCCCCGGCTATCGTCCAGGAGAGCACTTaGGAGTTTTTGAAGCATCCTCTCTCTGTGTGGTGG | + |
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Preference number: 6 (lower is better) Translates to: RMEAPAIVQEST*EFLKHPLSVWW Trigger: CCACCACACAGAGAGAGGATGCTTCAAAAACTCCCAAGTGCTCTCCTGGACGATAGCCGGGGCCTCCATCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000032239.11 ENSMUST00000176096.2 ENSMUST00000177367.8 |
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| CDS CAA 90 bp | AGGATGGAGGCCCCGGCTATCGTCCAGGAGAGCACTTGGGAGTTTTaGAAGCATCCTCTCTCTGTGTGGTGGGATGCAGGCGATTTGGTT | + |
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Preference number: 6 (lower is better) Translates to: RMEAPAIVQESTWEF*KHPLSVWWDAGDLV Trigger: AACCAAATCGCCTGCATCCCACCACACAGAGAGAGGATGCTTCAAAAACTCCCAAGTGCTCTCCTGGACGATAGCCGGGGCCTCCATCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000032239.11 ENSMUST00000176096.2 ENSMUST00000177367.8 |
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| CDS CAA 72 bp | TCCCTTATGGTGGCACAGTCCTCCACCAAAACTATATaGTTGGGCTCCCCAGCATCCCAGAAGCTCAGGGAC | + |
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Preference number: 6 (lower is better) Translates to: SLMVAQSSTKTI*LGSPASQKLRD Trigger: GTCCCTGAGCTTCTGGGATGCTGGGGAGCCCAACAATATAGTTTTGGTGGAGGACTGTGCCACCATAAGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032239.11 ENSMUST00000177367.8 |
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| CDS CCA 72 bp | TTATGGTGGCACAGTCCTCCACCAAAACTATATTGTTaGGCTCCCCAGCATCCCAGAAGCTCAGGGACTCTG | + |
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Preference number: 6 (lower is better) Translates to: LWWHSPPPKLYC*APQHPRSSGTL Trigger: CAGAGTCCCTGAGCTTCTGGGATGCTGGGGAGCCCAACAATATAGTTTTGGTGGAGGACTGTGCCACCATAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032239.11 ENSMUST00000177367.8 |
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| CDS CAA 72 bp | CTTATGGTGGCACAGTCCTCCACCAAAACTATATTGTaGGGCTCCCCAGCATCCCAGAAGCTCAGGGACTCT | + |
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Preference number: 6 (lower is better) Translates to: LMVAQSSTKTIL*GSPASQKLRDS Trigger: AGAGTCCCTGAGCTTCTGGGATGCTGGGGAGCCCAACAATATAGTTTTGGTGGAGGACTGTGCCACCATAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032239.11 ENSMUST00000177367.8 |
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| CDS CAA 90 bp | GAAGAGTCCCTTATGGTGGCACAGTCCTCCACCAAAACTATATTGTaGGGCTCCCCAGCATCCCAGAAGCTCAGGGACTCTGTGAAAGGT | + |
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Preference number: 6 (lower is better) Translates to: EESLMVAQSSTKTIL*GSPASQKLRDSVKG Trigger: ACCTTTCACAGAGTCCCTGAGCTTCTGGGATGCTGGGGAGCCCAACAATATAGTTTTGGTGGAGGACTGTGCCACCATAAGGGACTCTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032239.11 ENSMUST00000177367.8 |
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| CDS CAA 90 bp | ATCCCAGAAGCTCAGGGACTCTGTGAAAGGTGTATCATCCACCCATaGCCACTGACCCTCCACCACCTGGTCTGTCAGTCCAATATAAAA | + |
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Preference number: 6 (lower is better) Translates to: IPEAQGLCERCIIHP*PLTLHHLVCQSNIK Trigger: TTTTATATTGGACTGACAGACCAGGTGGTGGAGGGTCAGTGGCAATGGGTGGATGATACACCTTTCACAGAGTCCCTGAGCTTCTGGGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032239.11 ENSMUST00000177367.8 |
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| CDS CAA 90 bp | TTTGAAGAGTCCCTTATGGTGGCACAGTCCTCCACCAAAACTATATaGTTGGGCTCCCCAGCATCCCAGAAGCTCAGGGACTCTGTGAAA | + |
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Preference number: 6 (lower is better) Translates to: FEESLMVAQSSTKTI*LGSPASQKLRDSVK Trigger: TTTCACAGAGTCCCTGAGCTTCTGGGATGCTGGGGAGCCCAACAATATAGTTTTGGTGGAGGACTGTGCCACCATAAGGGACTCTTCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032239.11 ENSMUST00000177367.8 |
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| CDS TCA 72 bp | AATTCCTGCTCTTCCTGTGTGTCGATAACCACCAGGTaGGCCCCCATGTCTGAGCAATTCTTTAAACTTGAT | + |
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Preference number: 6 (lower is better) Translates to: NSCSSCVSITTR*APMSEQFFKLD Trigger: ATCAAGTTTAAAGAATTGCTCAGACATGGGGGCTCACCTGGTGGTTATCGACACACAGGAAGAGCAGGAATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032239.11 ENSMUST00000177367.8 |
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| CDS CCA 72 bp | CATTCCAGTTCTTCCTGGAGTTTGAAGAGTCCCTTATaGTGGCACAGTCCTCCACCAAAACTATATTGTTGG | + |
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Preference number: 6 (lower is better) Translates to: HSSSSWSLKSPL*WHSPPPKLYCW Trigger: CCAACAATATAGTTTTGGTGGAGGACTGTGCCACCATAAGGGACTCTTCAAACTCCAGGAAGAACTGGAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032239.11 ENSMUST00000177367.8 |
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| CDS CCA 72 bp | TACTGTAGAAACAGGGTATATCATTCCAGTTCTTCCTaGAGTTTGAAGAGTCCCTTATGGTGGCACAGTCCT | + |
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Preference number: 6 (lower is better) Translates to: YCRNRVYHSSSS*SLKSPLWWHSP Trigger: AGGACTGTGCCACCATAAGGGACTCTTCAAACTCCAGGAAGAACTGGAATGATATACCCTGTTTCTACAGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032239.11 ENSMUST00000177367.8 |
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| CDS TCA 72 bp | ATTGATAATGTTTCCAGTTCAAAGGACAGCAATTCTTaGCTGAACCTGATGCCTCACTGTAGCAGGAAAGCT | + |
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Preference number: 6 (lower is better) Translates to: IDNVSSSKDSNS*LNLMPHCSRKA Trigger: AGCTTTCCTGCTACAGTGAGGCATCAGGTTCAGTCAAGAATTGCTGTCCTTTGAACTGGAAACATTATCAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032239.11 |
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