Pregenerated sensors for CLEC4D (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030144Ensembl transcript IDs: ENSMUST00000032240.4, ENSMUST00000204826.3
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTCCATAAAGTCATTGGATTCCCCCTTTTCCCAGAATACCGTGTGTaGGTTAAATGGCGTCTTGTCCACCCACTGCCATTGGCCTTCCAC | + |
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Preference number: 1 (lower is better) Translates to: FHKVIGFPLFPEYRV*VKWRLVHPLPLAFH Trigger: GTGGAAGGCCAATGGCAGTGGGTGGACAAGACGCCATTTAACCCACACACGGTATTCTGGGAAAAGGGGGAATCCAATGACTTTATGGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000204826.3 |
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| 3UTR TCA 90 bp | TCATGGTTAACAGTGGTCTATGACCCAGTGTGTTCTTTATTTCTATaGTGCAAGGACACTTTCCCTGGGTCTGATAGGTTCATCTTCTTC | + |
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Preference number: 1 (lower is better) Translates to: SWLTVVYDPVCSLFL*CKDTFPGSDRFIFF Trigger: GAAGAAGATGAACCTATCAGACCCAGGGAAAGTGTCCTTGCATCATAGAAATAAAGAACACACTGGGTCATAGACCACTGTTAACCATGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032240.4 |
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| 3UTR TCA 90 bp | TCATCTTCTTCATCCTCATCAAGGATCACTTCGAGGGCTTCCAATTaGATGTTATTCCAGGTAATTTACAAATCCTTCTCACCTCAAAGT | + |
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Preference number: 1 (lower is better) Translates to: SSSSSSSRITSRASN*MLFQVIYKSFSPQS Trigger: ACTTTGAGGTGAGAAGGATTTGTAAATTACCTGGAATAACATTCAATTGGAAGCCCTCGAAGTGATCCTTGATGAGGATGAAGAAGATGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204826.3 |
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| 3UTR CAA 90 bp | GATTCCCCCTTTTCCCAGAATACCGTGTGTGGGTTAAATGGCGTCTaGTCCACCCACTGCCATTGGCCTTCCACATTCTCATCAGCAAGT | + |
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Preference number: 2 (lower is better) Translates to: DSPFSQNTVCGLNGV*STHCHWPSTFSSAS Trigger: ACTTGCTGATGAGAATGTGGAAGGCCAATGGCAGTGGGTGGACAAGACGCCATTTAACCCACACACGGTATTCTGGGAAAAGGGGGAATC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000204826.3 |
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| 3UTR-3UTR GCA 90 bp | ATTGGATTCCCCCTTTTCCCAGAATACCGTGTGTGGGTTAAATGGCGTCTTGTCTGGTCACCAGATGACTaGTCATCCCTGAGCAGTTCC | + |
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Preference number: 2 (lower is better) Translates to: IGFPLFPEYRVWVKWRLVWSPDD*SSLSSS Trigger: GGAACTGCTCAGGGATGAGCAGTCATCTGGTGACCA...GACAAGACGCCATTTAACCCACACACGGTATTCTGGGAAAAGGGGGAATCCAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000204826.3 |
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| 3UTR-3UTR GCA 90 bp | GTCTTGTCCACCCACTGCCATTGGCCTTCCACATTCTCATCAGCAAGTCCCAGGCACAAAATTCTGTTCTaGTTCGGTGTTGATGGTCAC | + |
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Preference number: 2 (lower is better) Translates to: VLSTHCHWPSTFSSASPRHKILF*FGVDGH Trigger: GTGACCATCAACACCGAAGCAGAACAGAATTTTGTG...CCTGGGACTTGCTGATGAGAATGTGGAAGGCCAATGGCAGTGGGTGGACAAGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204826.3 |
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| 3UTR CAA 90 bp | GAATACCGTGTGTGGGTTAAATGGCGTCTTGTCCACCCACTGCCATaGGCCTTCCACATTCTCATCAGCAAGTCCCAGGAAATAAGAAAA | + |
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Preference number: 2 (lower is better) Translates to: EYRVWVKWRLVHPLP*AFHILISKSQEIRK Trigger: TTTTCTTATTTCCTGGGACTTGCTGATGAGAATGTGGAAGGCCAATGGCAGTGGGTGGACAAGACGCCATTTAACCCACACACGGTATTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204826.3 |
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| 3UTR-3UTR TCA 90 bp | GTGTGCATGCCAGTGTGTACCCCCACACACAGAGAGACAGAGAGAGTGAGAGAGTGTTCTTTATTTCTATaGTGCAAGGACACTTTCCCT | + |
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Preference number: 2 (lower is better) Translates to: VCMPVCTPTHRETERVRECSLFL*CKDTFP Trigger: AGGGAAAGTGTCCTTGCATCATAGAAATAAAGAACA...CTCTCTCACTCTCTCTGTCTCTCTGTGTGTGGGGGTACACACTGGCATGCACAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032240.4 |
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| 3UTR-3UTR TCA 90 bp | CTTCCACATTCTCATCAGCAAGTCCCAGGAAATAAGAAAACCGTTTATCCAAAATTGATGGTCACCAGATaGCTGCTCATCCCTGAGCAG | + |
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Preference number: 2 (lower is better) Translates to: LPHSHQQVPGNKKTVYPKLMVTR*LLIPEQ Trigger: CTGCTCAGGGATGAGCAGTCATCTGGTGACCATCAA...TTTTGGATAAACGGTTTTCTTATTTCCTGGGACTTGCTGATGAGAATGTGGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000204826.3 |
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| 3UTR-3UTR CCA 90 bp | AAAGTCATTCCAGACCCATTTTTCATGGACATGAACAAGGACAACACAGTCTTCTCCACCCACTGCCATTaGCCTTCCACATTCTCATCA | + |
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Preference number: 2 (lower is better) Translates to: KVIPDPFFMDMNKDNTVFSTHCH*PSTFSS Trigger: TGATGAGAATGTGGAAGGCCAATGGCAGTGGGTGGA...GAAGACTGTGTTGTCCTTGTTCATGTCCATGAAAAATGGGTCTGGAATGACTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000204826.3 |
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| 3UTR-3UTR CCA 90 bp | TTATTCCAGGTAATTTACAAATCCTTCTCACCTCAAAGTGACAAGGAAAGTCATCGTGTGTGGGTTAAATaGCGTCTTGTCCACCCACTG | + |
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Preference number: 2 (lower is better) Translates to: LFQVIYKSFSPQSDKESHRVWVK*RLVHPL Trigger: CAGTGGGTGGACAAGACGCCATTTAACCCACACACG...ATGACTTTCCTTGTCACTTTGAGGTGAGAAGGATTTGTAAATTACCTGGAATAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204826.3 |
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| 3UTR CAA 90 bp | TTCATCTTCTTCATCCTCATCAAGGATCACTTCGAGGGCTTCCAATaGAATGTTATTCCAGGTAATTTACAAATCCTTCTCACCTCAAAG | + |
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Preference number: 2 (lower is better) Translates to: FIFFILIKDHFEGFQ*NVIPGNLQILLTSK Trigger: CTTTGAGGTGAGAAGGATTTGTAAATTACCTGGAATAACATTCAATTGGAAGCCCTCGAAGTGATCCTTGATGAGGATGAAGAAGATGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204826.3 |
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| 3UTR-3UTR TCA 90 bp | TTATTCCAGGTAATTTACAAATCCTTCTCACCTCAAAGTGACAAGGAAAGTCATTGTTCTTTATTTCTATaGTGCAAGGACACTTTCCCT | + |
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Preference number: 2 (lower is better) Translates to: LFQVIYKSFSPQSDKESHCSLFL*CKDTFP Trigger: AGGGAAAGTGTCCTTGCATCATAGAAATAAAGAACA...ATGACTTTCCTTGTCACTTTGAGGTGAGAAGGATTTGTAAATTACCTGGAATAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204826.3 |
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| 3UTR CCA 72 bp | GTCATTGGATTCCCCCTTTTCCCAGAATACCGTGTGTaGGTTAAATGGCGTCTTGTCCACCCACTGCCATTG | + |
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Preference number: 3 (lower is better) Translates to: VIGFPLFPEYRV*VKWRLVHPLPL Trigger: CAATGGCAGTGGGTGGACAAGACGCCATTTAACCCACACACGGTATTCTGGGAAAAGGGGGAATCCAATGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000204826.3 |
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| 3UTR TCA 72 bp | AAAGCTGGGTCACAAAATTCTGTTCTGCTTCGGTGTTaGTGGTCACCAGATGACTGCTCATCCCTGAGCAGT | + |
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Preference number: 3 (lower is better) Translates to: KAGSQNSVLLRC*WSPDDCSSLSS Trigger: ACTGCTCAGGGATGAGCAGTCATCTGGTGACCATCAACACCGAAGCAGAACAGAATTTTGTGACCCAGCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204826.3 |
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| 3UTR-3UTR CAA 90 bp | AAAGTCATTCCAGACCCATTTTTCATGGACATGAACAAGGACAACACAGTCTTCGGGTTAAATGGCGTCTaGTCCACCCACTGCCATTGG | + |
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Preference number: 3 (lower is better) Translates to: KVIPDPFFMDMNKDNTVFGLNGV*STHCHW Trigger: CCAATGGCAGTGGGTGGACAAGACGCCATTTAACCC...GAAGACTGTGTTGTCCTTGTTCATGTCCATGAAAAATGGGTCTGGAATGACTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000204826.3 |
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| 3UTR GCA 72 bp | CCGTTTATCCAAAAGCTGGGTCACAAAATTCTGTTCTaGTTCGGTGTTGATGGTCACCAGATGACTGCTCAT | + |
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Preference number: 3 (lower is better) Translates to: PFIQKLGHKILF*FGVDGHQMTAH Trigger: ATGAGCAGTCATCTGGTGACCATCAACACCGAAGCAGAACAGAATTTTGTGACCCAGCTTTTGGATAAACGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000204826.3 |
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| 3UTR TCA 72 bp | ACAGTGGTCTATGACCCAGTGTGTTCTTTATTTCTATaGTGCAAGGACACTTTCCCTGGGTCTGATAGGTTC | + |
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Preference number: 3 (lower is better) Translates to: TVVYDPVCSLFL*CKDTFPGSDRF Trigger: GAACCTATCAGACCCAGGGAAAGTGTCCTTGCATCATAGAAATAAAGAACACACTGGGTCATAGACCACTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032240.4 ENSMUST00000204826.3 |
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| 3UTR-3UTR CAA 90 bp | TTATTCCAGGTAATTTACAAATCCTTCTCACCTCAAAGTGACAAGGAAAGTCATGTCCACCCACTGCCATaGGCCTTCCACATTCTCATC | + |
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Preference number: 3 (lower is better) Translates to: LFQVIYKSFSPQSDKESHVHPLP*AFHILI Trigger: GATGAGAATGTGGAAGGCCAATGGCAGTGGGTGGAC...ATGACTTTCCTTGTCACTTTGAGGTGAGAAGGATTTGTAAATTACCTGGAATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204826.3 |
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| 3UTR TCA 72 bp | TCATCCTCATCAAGGATCACTTCGAGGGCTTCCAATTaGATGTTATTCCAGGTAATTTACAAATCCTTCTCA | + |
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Preference number: 3 (lower is better) Translates to: SSSSRITSRASN*MLFQVIYKSFS Trigger: TGAGAAGGATTTGTAAATTACCTGGAATAACATTCAATTGGAAGCCCTCGAAGTGATCCTTGATGAGGATGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204826.3 |
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| CDS-3UTR CCA 90 bp | GTGTGTACCCCCACACACAGAGAGACAGAGAGAGTGAGAGAGCACAAATTATGCTCCACCCACTGCCATTaGCCTTCCACATTCTCATCA | + |
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Preference number: 4 (lower is better) Translates to: VCTPTHRETERVREHKLCSTHCH*PSTFSS Trigger: TGATGAGAATGTGGAAGGCCAATGGCAGTGGGTGGA...GCATAATTTGTGCTCTCTCACTCTCTCTGTCTCTCTGTGTGTGGGGGTACACAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032240.4 |
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| 3UTR CAA 72 bp | TTTTCCCAGAATACCGTGTGTGGGTTAAATGGCGTCTaGTCCACCCACTGCCATTGGCCTTCCACATTCTCA | + |
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Preference number: 4 (lower is better) Translates to: FSQNTVCGLNGV*STHCHWPSTFS Trigger: TGAGAATGTGGAAGGCCAATGGCAGTGGGTGGACAAGACGCCATTTAACCCACACACGGTATTCTGGGAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204826.3 |
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| CDS-3UTR TCA 90 bp | GTCTTGTCCACCCACTGCCATTGGCCTTCCACATTCTCATCAGCAAGTCCCAGGAGTCACCAAACAAGTTaGAATAAAGCAAGCACTAAG | + |
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Preference number: 4 (lower is better) Translates to: VLSTHCHWPSTFSSASPRSHQTS*NKASTK Trigger: CTTAGTGCTTGCTTTATTTCAACTTGTTTGGTGACT...CCTGGGACTTGCTGATGAGAATGTGGAAGGCCAATGGCAGTGGGTGGACAAGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204826.3 |
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| CDS-3UTR TCA 90 bp | TTGTCCACCCACTGCCATTGGCCTTCCACATTCTCATCAGCAAGTCCCAGGAAAATGTCGGGTACCTTTTaGTTTCATTTGGGATTCTTC | + |
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Preference number: 4 (lower is better) Translates to: LSTHCHWPSTFSSASPRKMSGTF*FHLGFF Trigger: GAAGAATCCCAAATGAAATCAAAAGGTACCCGACAT...TTTCCTGGGACTTGCTGATGAGAATGTGGAAGGCCAATGGCAGTGGGTGGACAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000204826.3 |
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| CDS-3UTR GCA 90 bp | GTGTGTACCCCCACACACAGAGAGACAGAGAGAGTGAGAGAGCACAAATTATGCCACAAAATTCTGTTCTaGTTCGGTGTTGATGGTCAC | + |
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Preference number: 4 (lower is better) Translates to: VCTPTHRETERVREHKLCHKILF*FGVDGH Trigger: GTGACCATCAACACCGAAGCAGAACAGAATTTTGTG...GCATAATTTGTGCTCTCTCACTCTCTCTGTCTCTCTGTGTGTGGGGGTACACAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032240.4 |
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| CDS-3UTR TCA 90 bp | GTGTGTACCCCCACACACAGAGAGACAGAGAGAGTGAGAGAGCACAAATTATGCCATTTTTCATGGACATaGACAAGGACAACACAGTCT | + |
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Preference number: 4 (lower is better) Translates to: VCTPTHRETERVREHKLCHFSWT*TRTTQS Trigger: AGACTGTGTTGTCCTTGTTCATGTCCATGAAAAATG...GCATAATTTGTGCTCTCTCACTCTCTCTGTCTCTCTGTGTGTGGGGGTACACAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000032240.4 |
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| CDS-3UTR TCA 90 bp | AAACAGGACACAAAACCTCACTATCTTAAACATATGTGTGCATTAGCATGTGTGATGACTGCTCATCCCTaGGCAGTTCCTCTCGCTCTC | + |
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Preference number: 4 (lower is better) Translates to: KQDTKPHYLKHMCALACVMTAHP*AVPLAL Trigger: GAGAGCGAGAGGAACTGCTCAGGGATGAGCAGTCAT...CACACATGCTAATGCACACATATGTTTAAGATAGTGAGGTTTTGTGTCCTGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032240.4 |
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| CDS-3UTR TCA 90 bp | AAACAGGACACAAAACCTCACTATCTTAAACATATGTGTGCATTAGCATGTGTGTTGATGGTCACCAGATaGCTGCTCATCCCTGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: KQDTKPHYLKHMCALACVLMVTR*LLIPEQ Trigger: CTGCTCAGGGATGAGCAGTCATCTGGTGACCATCAA...CACACATGCTAATGCACACATATGTTTAAGATAGTGAGGTTTTGTGTCCTGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032240.4 |
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| CDS-3UTR GCA 90 bp | AAACAGGACACAAAACCTCACTATCTTAAACATATGTGTGCATTAGCATGTGTGTGGTCACCAGATGACTaGTCATCCCTGAGCAGTTCC | + |
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Preference number: 4 (lower is better) Translates to: KQDTKPHYLKHMCALACVWSPDD*SSLSSS Trigger: GGAACTGCTCAGGGATGAGCAGTCATCTGGTGACCA...CACACATGCTAATGCACACATATGTTTAAGATAGTGAGGTTTTGTGTCCTGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032240.4 |
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| CDS-3UTR GCA 90 bp | AAACAGGACACAAAACCTCACTATCTTAAACATATGTGTGCATTAGCATGTGTGGTCTTGTCCACCCACTaGCATTGGCCTTCCACATTC | + |
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Preference number: 4 (lower is better) Translates to: KQDTKPHYLKHMCALACVVLSTH*HWPSTF Trigger: GAATGTGGAAGGCCAATGGCAGTGGGTGGACAAGAC...CACACATGCTAATGCACACATATGTTTAAGATAGTGAGGTTTTGTGTCCTGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032240.4 |
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| CDS-3UTR CCA 90 bp | AAACAGGACACAAAACCTCACTATCTTAAACATATGTGTGCATTAGCATGTGTGCGTGTGTGGGTTAAATaGCGTCTTGTCCACCCACTG | + |
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Preference number: 4 (lower is better) Translates to: KQDTKPHYLKHMCALACVRVWVK*RLVHPL Trigger: CAGTGGGTGGACAAGACGCCATTTAACCCACACACG...CACACATGCTAATGCACACATATGTTTAAGATAGTGAGGTTTTGTGTCCTGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032240.4 |
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| CDS-3UTR CCA 90 bp | AAACAGGACACAAAACCTCACTATCTTAAACATATGTGTGCATTAGCATGTGTGCTCTCATGCCAGGTCTaGTTGTCATTAAGAGGAAAG | + |
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Preference number: 4 (lower is better) Translates to: KQDTKPHYLKHMCALACVLSCQV*LSLRGK Trigger: CTTTCCTCTTAATGACAACCAGACCTGGCATGAGAG...CACACATGCTAATGCACACATATGTTTAAGATAGTGAGGTTTTGTGTCCTGTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032240.4 |
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| 3UTR CAA 72 bp | TTCATCCTCATCAAGGATCACTTCGAGGGCTTCCAATaGAATGTTATTCCAGGTAATTTACAAATCCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: FILIKDHFEGFQ*NVIPGNLQILL Trigger: GAGAAGGATTTGTAAATTACCTGGAATAACATTCAATTGGAAGCCCTCGAAGTGATCCTTGATGAGGATGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204826.3 |
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| CDS-3UTR TCA 90 bp | AAACAGGACACAAAACCTCACTATCTTAAACATATGTGTGCATTAGCATGTGTGATGTCGGGTACCTTTTaGTTTCATTTGGGATTCTTC | + |
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Preference number: 4 (lower is better) Translates to: KQDTKPHYLKHMCALACVMSGTF*FHLGFF Trigger: GAAGAATCCCAAATGAAATCAAAAGGTACCCGACAT...CACACATGCTAATGCACACATATGTTTAAGATAGTGAGGTTTTGTGTCCTGTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032240.4 |
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| CDS-3UTR TCA 90 bp | AAACAGGACACAAAACCTCACTATCTTAAACATATGTGTGCATTAGCATGTGTGAGTCACCAAACAAGTTaGAATAAAGCAAGCACTAAG | + |
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Preference number: 4 (lower is better) Translates to: KQDTKPHYLKHMCALACVSHQTS*NKASTK Trigger: CTTAGTGCTTGCTTTATTTCAACTTGTTTGGTGACT...CACACATGCTAATGCACACATATGTTTAAGATAGTGAGGTTTTGTGTCCTGTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032240.4 |
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| CDS-3UTR CCA 90 bp | AAACAGGACACAAAACCTCACTATCTTAAACATATGTGTGCATTAGCATGTGTGCGTTTATCCAAAAGCTaGGTCACAAAATTCTGTTCT | + |
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Preference number: 4 (lower is better) Translates to: KQDTKPHYLKHMCALACVRLSKS*VTKFCS Trigger: AGAACAGAATTTTGTGACCCAGCTTTTGGATAAACG...CACACATGCTAATGCACACATATGTTTAAGATAGTGAGGTTTTGTGTCCTGTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032240.4 |
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| CDS-3UTR CAA 90 bp | GTGTGCATGCCAGTGTGTACCCCCACACACAGAGAGACAGAGAGAGTGAGAGAGGGGTTAAATGGCGTCTaGTCCACCCACTGCCATTGG | + |
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Preference number: 5 (lower is better) Translates to: VCMPVCTPTHRETERVREGLNGV*STHCHW Trigger: CCAATGGCAGTGGGTGGACAAGACGCCATTTAACCC...CTCTCTCACTCTCTCTGTCTCTCTGTGTGTGGGGGTACACACTGGCATGCACAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032240.4 |
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| CDS-3UTR CAA 90 bp | GTGTGTACCCCCACACACAGAGAGACAGAGAGAGTGAGAGAGCACAAATTATGCGACGCAAGGGATCAGTaGGGGATGTCGGGTACCTTT | + |
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Preference number: 5 (lower is better) Translates to: VCTPTHRETERVREHKLCDARDQ*GMSGTF Trigger: AAAGGTACCCGACATCCCCAACTGATCCCTTGCGTC...GCATAATTTGTGCTCTCTCACTCTCTCTGTCTCTCTGTGTGTGGGGGTACACAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032240.4 |
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| CDS-3UTR CAA 90 bp | GTGTGCATGCCAGTGTGTACCCCCACACACAGAGAGACAGAGAGAGTGAGAGAGTCTTCCATAAAGTCATaGGATTCCCCCTTTTCCCAG | + |
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Preference number: 5 (lower is better) Translates to: VCMPVCTPTHRETERVRESSIKS*DSPFSQ Trigger: CTGGGAAAAGGGGGAATCCAATGACTTTATGGAAGA...CTCTCTCACTCTCTCTGTCTCTCTGTGTGTGGGGGTACACACTGGCATGCACAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000032240.4 |
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| CDS-3UTR CAA 90 bp | AAACAGGACACAAAACCTCACTATCTTAAACATATGTGTGCATTAGCATGTGTGGTCCACCCACTGCCATaGGCCTTCCACATTCTCATC | + |
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Preference number: 5 (lower is better) Translates to: KQDTKPHYLKHMCALACVVHPLP*AFHILI Trigger: GATGAGAATGTGGAAGGCCAATGGCAGTGGGTGGAC...CACACATGCTAATGCACACATATGTTTAAGATAGTGAGGTTTTGTGTCCTGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032240.4 |
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| CDS-3UTR CAA 90 bp | TTATTCCAGGTAATTTACAAATCCTTCTCACCTCAAAGTGACAAGGAAAGTCATGACGCAAGGGATCAGTaGGGGATGTCGGGTACCTTT | + |
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Preference number: 5 (lower is better) Translates to: LFQVIYKSFSPQSDKESHDARDQ*GMSGTF Trigger: AAAGGTACCCGACATCCCCAACTGATCCCTTGCGTC...ATGACTTTCCTTGTCACTTTGAGGTGAGAAGGATTTGTAAATTACCTGGAATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204826.3 |
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| CDS-3UTR CAA 90 bp | AAACCGTTTATCCAAAAGCTGGGTCACAAAATTCTGTTCTGCTTCGGTGTTGATGATGTCGGGTACCTTTaGATTTCATTTGGGATTCTT | + |
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Preference number: 5 (lower is better) Translates to: KPFIQKLGHKILFCFGVDDVGYL*ISFGIL Trigger: AAGAATCCCAAATGAAATCAAAAGGTACCCGACATC...ATCAACACCGAAGCAGAACAGAATTTTGTGACCCAGCTTTTGGATAAACGGTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000204826.3 |
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| CDS-3UTR CAA 90 bp | AAACAGGACACAAAACCTCACTATCTTAAACATATGTGTGCATTAGCATGTGTGGATGTCGGGTACCTTTaGATTTCATTTGGGATTCTT | + |
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Preference number: 5 (lower is better) Translates to: KQDTKPHYLKHMCALACVDVGYL*ISFGIL Trigger: AAGAATCCCAAATGAAATCAAAAGGTACCCGACATC...CACACATGCTAATGCACACATATGTTTAAGATAGTGAGGTTTTGTGTCCTGTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032240.4 |
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| CDS TCA 72 bp | AAATTCTGTTCTGCTTCGGTGTTGATGGTCACCAGATaGCTGCTCATCCCTGAGCAGTTCCTCTCGCTCTCA | + |
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Preference number: 6 (lower is better) Translates to: KFCSASVLMVTR*LLIPEQFLSLS Trigger: TGAGAGCGAGAGGAACTGCTCAGGGATGAGCAGTCATCTGGTGACCATCAACACCGAAGCAGAACAGAATTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032240.4 |
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