Pregenerated sensors for CLEC4B1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030147

Ensembl transcript IDs: ENSMUST00000077228.11, ENSMUST00000078559.5

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	CCAGTGATGAAATCCTGCTCCTCCTGGCTATGGATCACCACTAGATaGGCACCCATGCGGGAGCAGTTCTCCTCACTCTTGTTCCAAGAT	+
Preference number: 5 (lower is better) Translates to: PVMKSCSSWLWITTR*APMREQFSSLLFQD Trigger: ATCTTGGAACAAGAGTGAGGAGAACTGCTCCCGCATGGGTGCTCATCTAGTGGTGATCCATAGCCAGGAGGAGCAGGATTTCATCACTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077228.11 ENSMUST00000078559.5
CDS CCA 90 bp	ACTTTGTCTGACACCATATTCCCTTCACTGAAGCAGGTCAATGAATaGTACCTGTCAAGTTCAGATAGTCTTCTATTTGGCTTGTCCATA	+
Preference number: 5 (lower is better) Translates to: TLSDTIFPSLKQVNE*YLSSSDSLLFGLSI Trigger: TATGGACAAGCCAAATAGAAGACTATCTGAACTTGACAGGTACCATTCATTGACCTGCTTCAGTGAAGGGAATATGGTGTCAGACAAAGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078559.5
CDS TCA 72 bp	AAATCCTGCTCCTCCTGGCTATGGATCACCACTAGATaGGCACCCATGCGGGAGCAGTTCTCCTCACTCTTG	+
Preference number: 6 (lower is better) Translates to: KSCSSWLWITTR*APMREQFSSLL Trigger: CAAGAGTGAGGAGAACTGCTCCCGCATGGGTGCTCATCTAGTGGTGATCCATAGCCAGGAGGAGCAGGATTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077228.11 ENSMUST00000078559.5
CDS GCA 72 bp	CCTCCTGGCTATGGATCACCACTAGATGAGCACCCATaGGGGAGCAGTTCTCCTCACTCTTGTTCCAAGATG	+
Preference number: 6 (lower is better) Translates to: PPGYGSPLDEHP*GSSSPHSCSKM Trigger: CATCTTGGAACAAGAGTGAGGAGAACTGCTCCCGCATGGGTGCTCATCTAGTGGTGATCCATAGCCAGGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077228.11 ENSMUST00000078559.5
CDS CAA 72 bp	CCAAGTAGCAGTGGGAACCAAATAGCTTCCAATCCTTaGGGCAACAGCTCCAGACTTTGTCCACACAGCTCG	+
Preference number: 6 (lower is better) Translates to: PSSSGNQIASNP*GNSSRLCPHSS Trigger: CGAGCTGTGTGGACAAAGTCTGGAGCTGTTGCCCAAAGGATTGGAAGCTATTTGGTTCCCACTGCTACTTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077228.11
CDS CAA 72 bp	AATAGCTTCCAATCCTTTGGGCAACAGCTCCAGACTTaGTCCACACAGCTCGCAATGAAACAGGTGCTGAGG	+
Preference number: 6 (lower is better) Translates to: NSFQSFGQQLQT*STQLAMKQVLR Trigger: CCTCAGCACCTGTTTCATTGCGAGCTGTGTGGACAAAGTCTGGAGCTGTTGCCCAAAGGATTGGAAGCTATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077228.11
CDS CAA 90 bp	CTGTGGGAACCAAGTAGCAGTGGGAACCAAATAGCTTCCAATCCTTaGGGCAACAGCTCCAGACTTTGTCTGACACCATATTCCCTTCAC	+
Preference number: 6 (lower is better) Translates to: LWEPSSSGNQIASNP*GNSSRLCLTPYSLH Trigger: GTGAAGGGAATATGGTGTCAGACAAAGTCTGGAGCTGTTGCCCAAAGGATTGGAAGCTATTTGGTTCCCACTGCTACTTGGTTCCCACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078559.5
CDS CAA 90 bp	TGGGAACCAAATAGCTTCCAATCCTTTGGGCAACAGCTCCAGACTTaGTCCACACAGCTCGCAATGAAACAGGTGCTGAGGAGTAAGATA	+
Preference number: 6 (lower is better) Translates to: WEPNSFQSFGQQLQT*STQLAMKQVLRSKI Trigger: TATCTTACTCCTCAGCACCTGTTTCATTGCGAGCTGTGTGGACAAAGTCTGGAGCTGTTGCCCAAAGGATTGGAAGCTATTTGGTTCCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077228.11
CDS CAA 72 bp	CCAAGTAGCAGTGGGAACCAAATAGCTTCCAATCCTTaGGGCAACAGCTCCAGACTTTGTCTGACACCATAT	+
Preference number: 6 (lower is better) Translates to: PSSSGNQIASNP*GNSSRLCLTPY Trigger: ATATGGTGTCAGACAAAGTCTGGAGCTGTTGCCCAAAGGATTGGAAGCTATTTGGTTCCCACTGCTACTTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078559.5
CDS CCA 72 bp	GACACCATATTCCCTTCACTGAAGCAGGTCAATGAATaGTACCTGTCAAGTTCAGATAGTCTTCTATTTGGC	+
Preference number: 6 (lower is better) Translates to: DTIFPSLKQVNE*YLSSSDSLLFG Trigger: GCCAAATAGAAGACTATCTGAACTTGACAGGTACCATTCATTGACCTGCTTCAGTGAAGGGAATATGGTGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078559.5
CDS CAA 72 bp	GTAACACATTTTTCATTGTCACTGCTGGGCTCACCATaGTGCCAGAATGTGACACTTTCTTCATATGGTGTC	+
Preference number: 6 (lower is better) Translates to: VTHFSLSLLGSP*CQNVTLSSYGV Trigger: GACACCATATGAAGAAAGTGTCACATTCTGGCACAATGGTGAGCCCAGCAGTGACAATGAAAAATGTGTTAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000077228.11 ENSMUST00000078559.5

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