Pregenerated sensors for CLEC4A4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000059639Ensembl transcript IDs: ENSMUST00000079379.3
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CTGGTGATGAAATCCTGCTCTGCCTGGCTGTGGATCACCACCAGATaGGCACCCATGTGGGAGCACTTCTCCTCACTCTCATTCCAAGAT | + |
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Preference number: 5 (lower is better) Translates to: LVMKSCSAWLWITTR*APMWEHFSSLSFQD Trigger: ATCTTGGAATGAGAGTGAGGAGAAGTGCTCCCACATGGGTGCTCATCTGGTGGTGATCCACAGCCAGGCAGAGCAGGATTTCATCACCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079379.3 |
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| CDS GCA 90 bp | ATAACCAGCACTTGTGTTCAGGTTGCTGGTGATGAAATCCTGCTCTaGCTGGCTGTGGATCACCACCAGATGAGCACCCATGTGGGAGCA | + |
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Preference number: 5 (lower is better) Translates to: ITSTCVQVAGDEILL*LAVDHHQMSTHVGA Trigger: TGCTCCCACATGGGTGCTCATCTGGTGGTGATCCACAGCCAGGCAGAGCAGGATTTCATCACCAGCAACCTGAACACAAGTGCTGGTTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079379.3 |
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| CDS CCA 90 bp | TTGGTTGGGCTCACCTTTGTGCCAGAACGTAGCACTCTTATTGTATaGTGTCTGATCAATCCATCGCCATTGTCTTTGACCAGCATCCAA | + |
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Preference number: 5 (lower is better) Translates to: LVGLTFVPERSTLIV*CLINPSPLSLTSIQ Trigger: TTGGATGCTGGTCAAAGACAATGGCGATGGATTGATCAGACACCATACAATAAGAGTGCTACGTTCTGGCACAAAGGTGAGCCCAACCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079379.3 |
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| CDS TCA 72 bp | ACGGATAGGTTTCTCTCTGGGAGCTGCAGGACATTTTaGGTAGGTGTCCAAGGAGTCGGATTCATTCGTGAT | + |
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Preference number: 6 (lower is better) Translates to: TDRFLSGSCRTF*VGVQGVGFIRD Trigger: ATCACGAATGAATCCGACTCCTTGGACACCTACTCAAAATGTCCTGCAGCTCCCAGAGAGAAACCTATCCGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079379.3 |
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| CDS GCA 72 bp | CATGTGGGAGCACTTCTCCTCACTCTCATTCCAAGATaGCTTCGAGTCATTCAAAATGAAGTAGCAGTGGGA | + |
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Preference number: 6 (lower is better) Translates to: HVGALLLTLIPR*LRVIQNEVAVG Trigger: TCCCACTGCTACTTCATTTTGAATGACTCGAAGGCATCTTGGAATGAGAGTGAGGAGAAGTGCTCCCACATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079379.3 |
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| CDS CCA 72 bp | CTCACCTTTGTGCCAGAACGTAGCACTCTTATTGTATaGTGTCTGATCAATCCATCGCCATTGTCTTTGACC | + |
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Preference number: 6 (lower is better) Translates to: LTFVPERSTLIV*CLINPSPLSLT Trigger: GGTCAAAGACAATGGCGATGGATTGATCAGACACCATACAATAAGAGTGCTACGTTCTGGCACAAAGGTGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079379.3 |
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| CDS CAA 72 bp | ATAACACATCGTTCCCAATCTTGGTTGGGCTCACCTTaGTGCCAGAACGTAGCACTCTTATTGTATGGTGTC | + |
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Preference number: 6 (lower is better) Translates to: ITHRSQSWLGSP*CQNVALLLYGV Trigger: GACACCATACAATAAGAGTGCTACGTTCTGGCACAAAGGTGAGCCCAACCAAGATTGGGAACGATGTGTTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079379.3 |
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| CDS CAA 90 bp | CCATCCAGTTGTTTTATGATTTATTATAACACATCGTTCCCAATCTaGGTTGGGCTCACCTTTGTGCCAGAACGTAGCACTCTTATTGTA | + |
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Preference number: 6 (lower is better) Translates to: PSSCFMIYYNTSFPI*VGLTFVPERSTLIV Trigger: TACAATAAGAGTGCTACGTTCTGGCACAAAGGTGAGCCCAACCAAGATTGGGAACGATGTGTTATAATAAATCATAAAACAACTGGATGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079379.3 |
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| CDS CAA 72 bp | TGTTTTATGATTTATTATAACACATCGTTCCCAATCTaGGTTGGGCTCACCTTTGTGCCAGAACGTAGCACT | + |
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Preference number: 6 (lower is better) Translates to: CFMIYYNTSFPI*VGLTFVPERST Trigger: AGTGCTACGTTCTGGCACAAAGGTGAGCCCAACCAAGATTGGGAACGATGTGTTATAATAAATCATAAAACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079379.3 |
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| CDS TCA 72 bp | CAAGGGATATCATTCCAGCCCCATCCAGTTGTTTTATaGTTTATTATAACACATCGTTCCCAATCTTGGTTG | + |
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Preference number: 6 (lower is better) Translates to: QGISFQPHPVVL*FIITHRSQSWL Trigger: CAACCAAGATTGGGAACGATGTGTTATAATAAATCATAAAACAACTGGATGGGGCTGGAATGATATCCCTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079379.3 |
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