Pregenerated sensors for CLEC4A3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043832Ensembl transcript IDs: ENSMUST00000088468.7, ENSMUST00000117173.8, ENSMUST00000204427.2
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAGAGAGAGAGAGAGATGGGTAAAAGGAATAAGACTTTGGGAATCTaGGAGTGGGCAGAGATGTTTGTTGCTTCCACATATGCACAGAGT | + |
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Preference number: 1 (lower is better) Translates to: EREREMGKRNKTLGI*EWAEMFVASTYAQS Trigger: ACTCTGTGCATATGTGGAAGCAACAAACATCTCTGCCCACTCTCAGATTCCCAAAGTCTTATTCCTTTTACCCATCTCTCTCTCTCTCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| 3UTR CCA 90 bp | CAGAGAGAGAGAGAGAGAGAGAGATGGGTAAAAGGAATAAGACTTTaGGAATCTGAGAGTGGGCAGAGATGTTTGTTGCTTCCACATATG | + |
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Preference number: 1 (lower is better) Translates to: QRERERERWVKGIRL*ESESGQRCLLLPHM Trigger: CATATGTGGAAGCAACAAACATCTCTGCCCACTCTCAGATTCCCAAAGTCTTATTCCTTTTACCCATCTCTCTCTCTCTCTCTCTCTCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| 3UTR-3UTR CCA 90 bp | TGGGAATCTGAGAGTGGGCAGAGATGTTTGTTGCTTCCACATATGCACAGAGTCAACAATGCAATCCCATaGCCATGGAGAATGTGTGAT | + |
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Preference number: 2 (lower is better) Translates to: WESESGQRCLLLPHMHRVNNAIP*PWRMCD Trigger: ATCACACATTCTCCATGGCCATGGGATTGCATTGTT...GACTCTGTGCATATGTGGAAGCAACAAACATCTCTGCCCACTCTCAGATTCCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| 3UTR-3UTR CCA 90 bp | GAGTGGGCAGAGATGTTTGTTGCTTCCACATATGCACAGAGTCTCCTATATAGTAACAATGCAATCCCATaGCCATGGAGAATGTGTGAT | + |
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Preference number: 2 (lower is better) Translates to: EWAEMFVASTYAQSLLYSNNAIP*PWRMCD Trigger: ATCACACATTCTCCATGGCCATGGGATTGCATTGTT...ACTATATAGGAGACTCTGTGCATATGTGGAAGCAACAAACATCTCTGCCCACTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| 3UTR-3UTR CCA 90 bp | TTTGGGAATCTGAGAGTGGGCAGAGATGTTTGTTGCTTCCACATATGCACAGAGCTACCTAAAATTCTGTaGATCTCTGTTCCACATGAA | + |
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Preference number: 2 (lower is better) Translates to: FGNLRVGRDVCCFHICTELPKIL*ISVPHE Trigger: TTCATGTGGAACAGAGATCCACAGAATTTTAGGTAG...CTCTGTGCATATGTGGAAGCAACAAACATCTCTGCCCACTCTCAGATTCCCAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| 3UTR-3UTR CCA 90 bp | CAAAGCCAGAGAGAGAGAGAGAGAGAGAGATGGGTAAAAGGAATAAGACTTTGGCTACCTAAAATTCTGTaGATCTCTGTTCCACATGAA | + |
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Preference number: 2 (lower is better) Translates to: QSQRERERERWVKGIRLWLPKIL*ISVPHE Trigger: TTCATGTGGAACAGAGATCCACAGAATTTTAGGTAG...CCAAAGTCTTATTCCTTTTACCCATCTCTCTCTCTCTCTCTCTCTCTGGCTTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| 3UTR-3UTR GCA 90 bp | AGATGGGTAAAAGGAATAAGACTTTGGGAATCTGAGAGTGGGCAGAGATGTTTGAACTTTCCAAGTGTCTaGGTAATGGTGGATAACAAT | + |
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Preference number: 2 (lower is better) Translates to: RWVKGIRLWESESGQRCLNFPSV*VMVDNN Trigger: ATTGTTATCCACCATTACGCAGACACTTGGAAAGTT...CAAACATCTCTGCCCACTCTCAGATTCCCAAAGTCTTATTCCTTTTACCCATCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| 3UTR-3UTR GCA 90 bp | CAGAGAGAGAGAGAGAGAGAGAGATGGGTAAAAGGAATAAGACTTTGGGAATCTAACTTTCCAAGTGTCTaGGTAATGGTGGATAACAAT | + |
|
Preference number: 2 (lower is better) Translates to: QRERERERWVKGIRLWESNFPSV*VMVDNN Trigger: ATTGTTATCCACCATTACGCAGACACTTGGAAAGTT...AGATTCCCAAAGTCTTATTCCTTTTACCCATCTCTCTCTCTCTCTCTCTCTCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| 3UTR GCA 72 bp | GGATCTCTGTTCCACATGAAGAACTTTCCAAGTGTCTaGGTAATGGTGGATAACAATGCAATCCCATGGCCA | + |
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Preference number: 3 (lower is better) Translates to: GSLFHMKNFPSV*VMVDNNAIPWP Trigger: TGGCCATGGGATTGCATTGTTATCCACCATTACGCAGACACTTGGAAAGTTCTTCATGTGGAACAGAGATCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| 3UTR TCA 72 bp | AGAGAGATGGGTAAAAGGAATAAGACTTTGGGAATCTaGGAGTGGGCAGAGATGTTTGTTGCTTCCACATAT | + |
|
Preference number: 3 (lower is better) Translates to: REMGKRNKTLGI*EWAEMFVASTY Trigger: ATATGTGGAAGCAACAAACATCTCTGCCCACTCTCAGATTCCCAAAGTCTTATTCCTTTTACCCATCTCTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| 3UTR GCA 72 bp | ACATGTGCCAGTATTATCATATGTATAACCATTGGCTaGCTACCTAAAATTCTGTGGATCTCTGTTCCACAT | + |
|
Preference number: 3 (lower is better) Translates to: TCASIIICITIG*LPKILWISVPH Trigger: ATGTGGAACAGAGATCCACAGAATTTTAGGTAGGCAGCCAATGGTTATACATATGATAATACTGGCACATGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| 3UTR CCA 72 bp | ATATGTATAACCATTGGCTGCCTACCTAAAATTCTGTaGATCTCTGTTCCACATGAAGAACTTTCCAAGTGT | + |
|
Preference number: 3 (lower is better) Translates to: ICITIGCLPKIL*ISVPHEELSKC Trigger: ACACTTGGAAAGTTCTTCATGTGGAACAGAGATCCACAGAATTTTAGGTAGGCAGCCAATGGTTATACATAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR CCA 90 bp | TGGGAATCTGAGAGTGGGCAGAGATGTTTGTTGCTTCCACATATGCACAGAGTCGACGTGTTCTTCCTTTaGGGAGCTGGCCAAGAGTCT | + |
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Preference number: 4 (lower is better) Translates to: WESESGQRCLLLPHMHRVDVFFL*GAGQES Trigger: AGACTCTTGGCCAGCTCCCCAAAGGAAGAACACGTC...GACTCTGTGCATATGTGGAAGCAACAAACATCTCTGCCCACTCTCAGATTCCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR CCA 90 bp | GACTTTGGGAATCTGAGAGTGGGCAGAGATGTTTGTTGCTTCCACATATGCACAGACGTGTTCTTCCTTTaGGGAGCTGGCCAAGAGTCT | + |
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Preference number: 4 (lower is better) Translates to: DFGNLRVGRDVCCFHICTDVFFL*GAGQES Trigger: AGACTCTTGGCCAGCTCCCCAAAGGAAGAACACGTC...TGTGCATATGTGGAAGCAACAAACATCTCTGCCCACTCTCAGATTCCCAAAGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR TCA 90 bp | AGATGGGTAAAAGGAATAAGACTTTGGGAATCTGAGAGTGGGCAGAGATGTTTGTGGATCACCACCAGATaGGCACCCATGTGGAAGCAG | + |
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Preference number: 4 (lower is better) Translates to: RWVKGIRLWESESGQRCLWITTR*APMWKQ Trigger: CTGCTTCCACATGGGTGCTCATCTGGTGGTGATCCA...CAAACATCTCTGCCCACTCTCAGATTCCCAAAGTCTTATTCCTTTTACCCATCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR TCA 90 bp | CAGAGAGAGAGAGAGAGAGAGAGATGGGTAAAAGGAATAAGACTTTGGGAATCTTGGATCACCACCAGATaGGCACCCATGTGGAAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: QRERERERWVKGIRLWESWITTR*APMWKQ Trigger: CTGCTTCCACATGGGTGCTCATCTGGTGGTGATCCA...AGATTCCCAAAGTCTTATTCCTTTTACCCATCTCTCTCTCTCTCTCTCTCTCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR CCA 90 bp | CTGAGAGTGGGCAGAGATGTTTGTTGCTTCCACATATGCACAGAGTCTCCTATACGGCTTCCAATCCTTTaGGCAACAGCTCCAGACTTT | + |
|
Preference number: 4 (lower is better) Translates to: LRVGRDVCCFHICTESPIRLPIL*ATAPDF Trigger: AAAGTCTGGAGCTGTTGCCCAAAGGATTGGAAGCCG...TATAGGAGACTCTGTGCATATGTGGAAGCAACAAACATCTCTGCCCACTCTCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR CCA 90 bp | TGGGAATCTGAGAGTGGGCAGAGATGTTTGTTGCTTCCACATATGCACAGAGTCAAATCCTGTTCTTCCTaGCTGTGGATCACCACCAGA | + |
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Preference number: 4 (lower is better) Translates to: WESESGQRCLLLPHMHRVKSCSS*LWITTR Trigger: TCTGGTGGTGATCCACAGCCAGGAAGAACAGGATTT...GACTCTGTGCATATGTGGAAGCAACAAACATCTCTGCCCACTCTCAGATTCCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR TCA 90 bp | TGGGAATCTGAGAGTGGGCAGAGATGTTTGTTGCTTCCACATATGCACAGAGTCCCAAGTCAGTTGAAGTaGAGTAGCAGTAGGAACCAA | + |
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Preference number: 4 (lower is better) Translates to: WESESGQRCLLLPHMHRVPSQLK*SSSRNQ Trigger: TTGGTTCCTACTGCTACTTCACTTCAACTGACTTGG...GACTCTGTGCATATGTGGAAGCAACAAACATCTCTGCCCACTCTCAGATTCCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR CCA 90 bp | ATAACCATTGGCTGCCTACCTAAAATTCTGTGGATCTCTGTTCCACATGAAGAACGGCTTCCAATCCTTTaGGCAACAGCTCCAGACTTT | + |
|
Preference number: 4 (lower is better) Translates to: ITIGCLPKILWISVPHEERLPIL*ATAPDF Trigger: AAAGTCTGGAGCTGTTGCCCAAAGGATTGGAAGCCG...TTCTTCATGTGGAACAGAGATCCACAGAATTTTAGGTAGGCAGCCAATGGTTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR TCA 90 bp | GAGTGGGCAGAGATGTTTGTTGCTTCCACATATGCACAGAGTCTCCTATATAGTGTCTGTGTCGATGTCTaGGGAGTCAACTTTATTTTT | + |
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Preference number: 4 (lower is better) Translates to: EWAEMFVASTYAQSLLYSVCVDV*GVNFIF Trigger: AAAAATAAAGTTGACTCCTCAGACATCGACACAGAC...ACTATATAGGAGACTCTGTGCATATGTGGAAGCAACAAACATCTCTGCCCACTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR TCA 90 bp | GACTTTGGGAATCTGAGAGTGGGCAGAGATGTTTGTTGCTTCCACATATGCACAGAAATAGATTATGAGTaGGGTAAAGAGGACCTTAGA | + |
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Preference number: 4 (lower is better) Translates to: DFGNLRVGRDVCCFHICTEIDYE*GKEDLR Trigger: TCTAAGGTCCTCTTTACCTCACTCATAATCTATTTC...TGTGCATATGTGGAAGCAACAAACATCTCTGCCCACTCTCAGATTCCCAAAGTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR TCA 90 bp | CAAAGCCAGAGAGAGAGAGAGAGAGAGAGATGGGTAAAAGGAATAAGACTTTGGATCCATTGCCATTGTTaGTCACCTGGATTTGAAAGT | + |
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Preference number: 4 (lower is better) Translates to: QSQRERERERWVKGIRLWIHCHC*SPGFES Trigger: ACTTTCAAATCCAGGTGATCAACAATGGCAATGGAT...CCAAAGTCTTATTCCTTTTACCCATCTCTCTCTCTCTCTCTCTCTCTGGCTTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR GCA 90 bp | CAGAGAGAGAGAGAGAGAGAGAGATGGGTAAAAGGAATAAGACTTTGGGAATCTCTAGGCTCACCTTTGTaGCAGAATGTGGTATTATCA | + |
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Preference number: 4 (lower is better) Translates to: QRERERERWVKGIRLWESLGSPL*QNVVLS Trigger: TGATAATACCACATTCTGGCACAAAGGTGAGCCTAG...AGATTCCCAAAGTCTTATTCCTTTTACCCATCTCTCTCTCTCTCTCTCTCTCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR TCA 90 bp | CAGAGAGAGAGAGAGAGAGAGAGATGGGTAAAAGGAATAAGACTTTGGGAATCTGTCTGTGTCGATGTCTaGGGAGTCAACTTTATTTTT | + |
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Preference number: 4 (lower is better) Translates to: QRERERERWVKGIRLWESVCVDV*GVNFIF Trigger: AAAAATAAAGTTGACTCCTCAGACATCGACACAGAC...AGATTCCCAAAGTCTTATTCCTTTTACCCATCTCTCTCTCTCTCTCTCTCTCTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR TCA 90 bp | CAAAGCCAGAGAGAGAGAGAGAGAGAGAGATGGGTAAAAGGAATAAGACTTTGGTTTCACATGGCAAATTaGGTTCTGTTTATCACTGCA | + |
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Preference number: 4 (lower is better) Translates to: QSQRERERERWVKGIRLWFHMAN*VLFITA Trigger: TGCAGTGATAAACAGAACTCAATTTGCCATGTGAAA...CCAAAGTCTTATTCCTTTTACCCATCTCTCTCTCTCTCTCTCTCTCTGGCTTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR GCA 90 bp | TACCTAAAATTCTGTGGATCTCTGTTCCACATGAAGAACTTTCCAAGTGTCTGCCTAGGCTCACCTTTGTaGCAGAATGTGGTATTATCA | + |
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Preference number: 4 (lower is better) Translates to: YLKFCGSLFHMKNFPSVCLGSPL*QNVVLS Trigger: TGATAATACCACATTCTGGCACAAAGGTGAGCCTAG...GCAGACACTTGGAAAGTTCTTCATGTGGAACAGAGATCCACAGAATTTTAGGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR TCA 90 bp | CTACCTAAAATTCTGTGGATCTCTGTTCCACATGAAGAACTTTCCAAGTGTCTGATCCATTGCCATTGTTaGTCACCTGGATTTGAAAGT | + |
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Preference number: 4 (lower is better) Translates to: LPKILWISVPHEELSKCLIHCHC*SPGFES Trigger: ACTTTCAAATCCAGGTGATCAACAATGGCAATGGAT...CAGACACTTGGAAAGTTCTTCATGTGGAACAGAGATCCACAGAATTTTAGGTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR TCA 90 bp | TGCCTACCTAAAATTCTGTGGATCTCTGTTCCACATGAAGAACTTTCCAAGTGTGAAATAGATTATGAGTaGGGTAAAGAGGACCTTAGA | + |
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Preference number: 4 (lower is better) Translates to: CLPKILWISVPHEELSKCEIDYE*GKEDLR Trigger: TCTAAGGTCCTCTTTACCTCACTCATAATCTATTTC...ACACTTGGAAAGTTCTTCATGTGGAACAGAGATCCACAGAATTTTAGGTAGGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS TCA 90 bp | CCAGTGATGAAATCCTGTTCTTCCTGGCTGTGGATCACCACCAGATaGGCACCCATGTGGAAGCAGTTCTCCTTACTCTCATTCCAAGAT | + |
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Preference number: 5 (lower is better) Translates to: PVMKSCSSWLWITTR*APMWKQFSLLSFQD Trigger: ATCTTGGAATGAGAGTAAGGAGAACTGCTTCCACATGGGTGCTCATCTGGTGGTGATCCACAGCCAGGAAGAACAGGATTTCATCACTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR CAA 90 bp | GCTGCCTACCTAAAATTCTGTGGATCTCTGTTCCACATGAAGAACTTTCCAAGTAGACGTGTTCTTCCTTaGGGGAGCTGGCCAAGAGTC | + |
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Preference number: 5 (lower is better) Translates to: AAYLKFCGSLFHMKNFPSRRVLP*GSWPRV Trigger: GACTCTTGGCCAGCTCCCCAAAGGAAGAACACGTCT...ACTTGGAAAGTTCTTCATGTGGAACAGAGATCCACAGAATTTTAGGTAGGCAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR CAA 90 bp | GACTTTGGGAATCTGAGAGTGGGCAGAGATGTTTGTTGCTTCCACATATGCACACAACAGCTCCAGACTTaGTCTTCCAAGAGTGAAGCC | + |
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Preference number: 5 (lower is better) Translates to: DFGNLRVGRDVCCFHICTQQLQT*SSKSEA Trigger: GGCTTCACTCTTGGAAGACAAAGTCTGGAGCTGTTG...TGTGCATATGTGGAAGCAACAAACATCTCTGCCCACTCTCAGATTCCCAAAGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS TCA 90 bp | AGTTCTCCTTACTCTCATTCCAAGATGCCACCAAGTCAGTTGAAGTaGAGTAGCAGTAGGAACCAAACGGCTTCCAATCCTTTGGGCAAC | + |
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Preference number: 5 (lower is better) Translates to: SSPYSHSKMPPSQLK*SSSRNQTASNPLGN Trigger: GTTGCCCAAAGGATTGGAAGCCGTTTGGTTCCTACTGCTACTTCACTTCAACTGACTTGGTGGCATCTTGGAATGAGAGTAAGGAGAACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 ENSMUST00000204427.2 |
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| CDS-3UTR CAA 90 bp | ATAACCATTGGCTGCCTACCTAAAATTCTGTGGATCTCTGTTCCACATGAAGAAAGACGTGTTCTTCCTTaGGGGAGCTGGCCAAGAGTC | + |
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Preference number: 5 (lower is better) Translates to: ITIGCLPKILWISVPHEERRVLP*GSWPRV Trigger: GACTCTTGGCCAGCTCCCCAAAGGAAGAACACGTCT...TTCTTCATGTGGAACAGAGATCCACAGAATTTTAGGTAGGCAGCCAATGGTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR CAA 90 bp | ATTGGCTGCCTACCTAAAATTCTGTGGATCTCTGTTCCACATGAAGAACTTTCCACGGCTTCCAATCCTTaGGGCAACAGCTCCAGACTT | + |
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Preference number: 5 (lower is better) Translates to: IGCLPKILWISVPHEELSTASNP*GNSSRL Trigger: AAGTCTGGAGCTGTTGCCCAAAGGATTGGAAGCCGT...GGAAAGTTCTTCATGTGGAACAGAGATCCACAGAATTTTAGGTAGGCAGCCAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR CAA 90 bp | GCTGCCTACCTAAAATTCTGTGGATCTCTGTTCCACATGAAGAACTTTCCAAGTACGGCTTCCAATCCTTaGGGCAACAGCTCCAGACTT | + |
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Preference number: 5 (lower is better) Translates to: AAYLKFCGSLFHMKNFPSTASNP*GNSSRL Trigger: AAGTCTGGAGCTGTTGCCCAAAGGATTGGAAGCCGT...ACTTGGAAAGTTCTTCATGTGGAACAGAGATCCACAGAATTTTAGGTAGGCAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR CAA 90 bp | TTTGGGAATCTGAGAGTGGGCAGAGATGTTTGTTGCTTCCACATATGCACAGAGATAACACACTGTTCATaGTCACTGCTAGGCTCACCT | + |
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Preference number: 5 (lower is better) Translates to: FGNLRVGRDVCCFHICTEITHCS*SLLGSP Trigger: AGGTGAGCCTAGCAGTGACAATGAACAGTGTGTTAT...CTCTGTGCATATGTGGAAGCAACAAACATCTCTGCCCACTCTCAGATTCCCAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR CAA 90 bp | TGCCTACCTAAAATTCTGTGGATCTCTGTTCCACATGAAGAACTTTCCAAGTGTCAACAGCTCCAGACTTaGTCTTCCAAGAGTGAAGCC | + |
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Preference number: 5 (lower is better) Translates to: CLPKILWISVPHEELSKCQQLQT*SSKSEA Trigger: GGCTTCACTCTTGGAAGACAAAGTCTGGAGCTGTTG...ACACTTGGAAAGTTCTTCATGTGGAACAGAGATCCACAGAATTTTAGGTAGGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR CAA 90 bp | GAGTGGGCAGAGATGTTTGTTGCTTCCACATATGCACAGAGTCTCCTATATAGTATAACACACTGTTCATaGTCACTGCTAGGCTCACCT | + |
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Preference number: 5 (lower is better) Translates to: EWAEMFVASTYAQSLLYSITHCS*SLLGSP Trigger: AGGTGAGCCTAGCAGTGACAATGAACAGTGTGTTAT...ACTATATAGGAGACTCTGTGCATATGTGGAAGCAACAAACATCTCTGCCCACTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR CAA 90 bp | GACTTTGGGAATCTGAGAGTGGGCAGAGATGTTTGTTGCTTCCACATATGCACAAGAGTGAAGCCCATTTaGTACACTCCAATTCAGTAT | + |
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Preference number: 5 (lower is better) Translates to: DFGNLRVGRDVCCFHICTRVKPI*YTPIQY Trigger: ATACTGAATTGGAGTGTACAAAATGGGCTTCACTCT...TGTGCATATGTGGAAGCAACAAACATCTCTGCCCACTCTCAGATTCCCAAAGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR CAA 90 bp | TGCCTACCTAAAATTCTGTGGATCTCTGTTCCACATGAAGAACTTTCCAAGTGTCTGCTAGGCTCACCTTaGTGCCAGAATGTGGTATTA | + |
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Preference number: 5 (lower is better) Translates to: CLPKILWISVPHEELSKCLLGSP*CQNVVL Trigger: TAATACCACATTCTGGCACAAAGGTGAGCCTAGCAG...ACACTTGGAAAGTTCTTCATGTGGAACAGAGATCCACAGAATTTTAGGTAGGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR CAA 90 bp | TACCTAAAATTCTGTGGATCTCTGTTCCACATGAAGAACTTTCCAAGTGTCTGCCTGCTAGGCTCACCTTaGTGCCAGAATGTGGTATTA | + |
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Preference number: 5 (lower is better) Translates to: YLKFCGSLFHMKNFPSVCLLGSP*CQNVVL Trigger: TAATACCACATTCTGGCACAAAGGTGAGCCTAGCAG...GCAGACACTTGGAAAGTTCTTCATGTGGAACAGAGATCCACAGAATTTTAGGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS TCA 90 bp | CGTGTTCTTCCTTTGGGGAGCTGGCCAAGAGTCTGTGTCGATGTCTaGGGAGTCAACTTTATTTTTGAAGTTCGTGTTAACATAAATGTT | + |
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Preference number: 5 (lower is better) Translates to: RVLPLGSWPRVCVDV*GVNFIFEVRVNINV Trigger: AACATTTATGTTAACACGAACTTCAAAAATAAAGTTGACTCCTCAGACATCGACACAGACTCTTGGCCAGCTCCCCAAAGGAAGAACACG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 ENSMUST00000204427.2 |
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| CDS-3UTR CAA 90 bp | GAGTGGGCAGAGATGTTTGTTGCTTCCACATATGCACAGAGTCTCCTATATAGTAGAGTGAAGCCCATTTaGTACACTCCAATTCAGTAT | + |
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Preference number: 5 (lower is better) Translates to: EWAEMFVASTYAQSLLYSRVKPI*YTPIQY Trigger: ATACTGAATTGGAGTGTACAAAATGGGCTTCACTCT...ACTATATAGGAGACTCTGTGCATATGTGGAAGCAACAAACATCTCTGCCCACTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR CAA 90 bp | CTGAGAGTGGGCAGAGATGTTTGTTGCTTCCACATATGCACAGAGTCTCCTATATTTTCACATGGCAAATaGAGTTCTGTTTATCACTGC | + |
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Preference number: 5 (lower is better) Translates to: LRVGRDVCCFHICTESPIFSHGK*SSVYHC Trigger: GCAGTGATAAACAGAACTCAATTTGCCATGTGAAAA...TATAGGAGACTCTGTGCATATGTGGAAGCAACAAACATCTCTGCCCACTCTCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR CAA 90 bp | CTACCTAAAATTCTGTGGATCTCTGTTCCACATGAAGAACTTTCCAAGTGTCTGCACCGGAGAATAAGATaGTCAACAGCAGGAAATAGA | + |
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Preference number: 5 (lower is better) Translates to: LPKILWISVPHEELSKCLHRRIR*STAGNR Trigger: TCTATTTCCTGCTGTTGACAATCTTATTCTCCGGTG...CAGACACTTGGAAAGTTCTTCATGTGGAACAGAGATCCACAGAATTTTAGGTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS-3UTR CAA 90 bp | ATAACCATTGGCTGCCTACCTAAAATTCTGTGGATCTCTGTTCCACATGAAGAATTTTCACATGGCAAATaGAGTTCTGTTTATCACTGC | + |
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Preference number: 5 (lower is better) Translates to: ITIGCLPKILWISVPHEEFSHGK*SSVYHC Trigger: GCAGTGATAAACAGAACTCAATTTGCCATGTGAAAA...TTCTTCATGTGGAACAGAGATCCACAGAATTTTAGGTAGGCAGCCAATGGTTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 |
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| CDS CCA 72 bp | GAAGTAGCAGTAGGAACCAAACGGCTTCCAATCCTTTaGGCAACAGCTCCAGACTTTGTTGATCAGAGCACC | + |
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Preference number: 6 (lower is better) Translates to: EVAVGTKRLPIL*ATAPDFVDQST Trigger: GGTGCTCTGATCAACAAAGTCTGGAGCTGTTGCCCAAAGGATTGGAAGCCGTTTGGTTCCTACTGCTACTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204427.2 |
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| CDS CAA 72 bp | AACGGCTTCCAATCCTTTGGGCAACAGCTCCAGACTTaGTTGATCAGAGCACCGGAGAATAAGATTGTCAAC | + |
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Preference number: 6 (lower is better) Translates to: NGFQSFGQQLQT*LIRAPENKIVN Trigger: GTTGACAATCTTATTCTCCGGTGCTCTGATCAACAAAGTCTGGAGCTGTTGCCCAAAGGATTGGAAGCCGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204427.2 |
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| CDS TCA 72 bp | TACTCTCATTCCAAGATGCCACCAAGTCAGTTGAAGTaGAGTAGCAGTAGGAACCAAACGGCTTCCAATCCT | + |
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Preference number: 6 (lower is better) Translates to: YSHSKMPPSQLK*SSSRNQTASNP Trigger: AGGATTGGAAGCCGTTTGGTTCCTACTGCTACTTCACTTCAACTGACTTGGTGGCATCTTGGAATGAGAGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088468.7 ENSMUST00000117173.8 ENSMUST00000204427.2 |
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