Pregenerated sensors for CLEC4A2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030148Ensembl transcript IDs: ENSMUST00000032248.8, ENSMUST00000041779.13, ENSMUST00000161365.8, ENSMUST00000161636.8
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTTGTTCTCAAACATCATTTAATCAACACACAAAACAATAATCACTaGATGTTGGTAGCTGGGAATGCTGCTTTTCATGAATCATTAGAG | + |
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Preference number: 1 (lower is better) Translates to: LVLKHHLINTQNNNH*MLVAGNAAFHESLE Trigger: CTCTAATGATTCATGAAAAGCAGCATTCCCAGCTACCAACATGCAGTGATTATTGTTTTGTGTGTTGATTAAATGATGTTTGAGAACAAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041779.13 |
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| 3UTR-3UTR TCA 90 bp | CAAAACAATAATCACTGCATGTTGGTAGCTGGGAATGCTGCTTTTCATGAATCAGGGTACTGGGGTCTCTaGCATGTTGATGAAGGGAAC | + |
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Preference number: 2 (lower is better) Translates to: QNNNHCMLVAGNAAFHESGYWGL*HVDEGN Trigger: GTTCCCTTCATCAACATGTCAGAGACCCCAGTACCC...TGATTCATGAAAAGCAGCATTCCCAGCTACCAACATGCAGTGATTATTGTTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000041779.13 |
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| 3UTR-3UTR CCA 90 bp | AATCACTGCATGTTGGTAGCTGGGAATGCTGCTTTTCATGAATCATTAGAGAAACATGGTTGTAAAGGGTaGGGTACTGGGGTCTCTGAC | + |
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Preference number: 2 (lower is better) Translates to: NHCMLVAGNAAFHESLEKHGCKG*GTGVSD Trigger: GTCAGAGACCCCAGTACCCCACCCTTTACAACCATG...TTTCTCTAATGATTCATGAAAAGCAGCATTCCCAGCTACCAACATGCAGTGATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041779.13 |
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| 3UTR-3UTR CCA 90 bp | AAACAGATAGGTCAAGAGAACCTATCATACAATGGCATGAGTAAACAAGATGGCGCACAAGGATATATGTaGGCCAGTGTATGCATAACC | + |
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Preference number: 2 (lower is better) Translates to: KQIGQENLSYNGMSKQDGAQGYM*ASVCIT Trigger: GGTTATGCATACACTGGCCCACATATATCCTTGTGC...GCCATCTTGTTTACTCATGCCATTGTATGATAGGTTCTCTTGACCTATCTGTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| 3UTR-3UTR CCA 90 bp | CAAAACAATAATCACTGCATGTTGGTAGCTGGGAATGCTGCTTTTCATGAATCAGCACAAGGATATATGTaGGCCAGTGTATGCATAACC | + |
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Preference number: 2 (lower is better) Translates to: QNNNHCMLVAGNAAFHESAQGYM*ASVCIT Trigger: GGTTATGCATACACTGGCCCACATATATCCTTGTGC...TGATTCATGAAAAGCAGCATTCCCAGCTACCAACATGCAGTGATTATTGTTTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041779.13 |
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| 3UTR-3UTR CCA 90 bp | GTAAATGCACAAGGATATATGTGGGCCAGTGTATGCATAACCATTTGCTGCCCATGTCTGTGTAATGGTTaGATAACAATGAATCGAATG | + |
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Preference number: 2 (lower is better) Translates to: VNAQGYMWASVCITICCPCLCNG*ITMNRM Trigger: CATTCGATTCATTGTTATCCAACCATTACACAGACA...TGGGCAGCAAATGGTTATGCATACACTGGCCCACATATATCCTTGTGCATTTAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| 3UTR CAA 90 bp | TTTCTGAATGCTGCCTCAGAGGCTGATGCAGTTTTATTTCACATATaGACTTATGAAACTGGTTACATGAATATGTCTGAGCTAGCTCAG | + |
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Preference number: 2 (lower is better) Translates to: FLNAASEADAVLFHI*TYETGYMNMSELAQ Trigger: CTGAGCTAGCTCAGACATATTCATGTAACCAGTTTCATAAGTCAATATGTGAAATAAAACTGCATCAGCCTCTGAGGCAGCATTCAGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041779.13 |
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| 3UTR-3UTR GCA 90 bp | AAACAGATAGGTCAAGAGAACCTATCATACAATGGCATGAGTAAACAAGATGGCGTATGCATAACCATTTaGTGCCCACTTAAATTCTGT | + |
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Preference number: 2 (lower is better) Translates to: KQIGQENLSYNGMSKQDGVCITI*CPLKFC Trigger: ACAGAATTTAAGTGGGCAGCAAATGGTTATGCATAC...GCCATCTTGTTTACTCATGCCATTGTATGATAGGTTCTCTTGACCTATCTGTTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| 3UTR-3UTR GCA 90 bp | AAACAGAAACAGATAGGTCAAGAGAACCTATCATACAATGGCATGAGTAAACAATGCATAACCATTTGCTaGCCACTTAAATTCTGTGAA | + |
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Preference number: 2 (lower is better) Translates to: KQKQIGQENLSYNGMSKQCITIC*PLKFCE Trigger: TTCACAGAATTTAAGTGGGCAGCAAATGGTTATGCA...TTGTTTACTCATGCCATTGTATGATAGGTTCTCTTGACCTATCTGTTTCTGTTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| 3UTR-3UTR CAA 90 bp | CAAAACAATAATCACTGCATGTTGGTAGCTGGGAATGCTGCTTTTCATGAATCAGGGGTCTCTGACATGTaGATGAAGGGAACAAACTGC | + |
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Preference number: 3 (lower is better) Translates to: QNNNHCMLVAGNAAFHESGVSDM*MKGTNC Trigger: GCAGTTTGTTCCCTTCATCAACATGTCAGAGACCCC...TGATTCATGAAAAGCAGCATTCCCAGCTACCAACATGCAGTGATTATTGTTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000041779.13 |
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| 3UTR GCA 72 bp | GGATATATGTGGGCCAGTGTATGCATAACCATTTGCTaGCCACTTAAATTCTGTGAACCTGTAGAATTTCCC | + |
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Preference number: 3 (lower is better) Translates to: GYMWASVCITIC*PLKFCEPVEFP Trigger: GGGAAATTCTACAGGTTCACAGAATTTAAGTGGGCAGCAAATGGTTATGCATACACTGGCCCACATATATCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| 3UTR GCA 72 bp | TGGGTAAATGCACAAGGATATATGTGGGCCAGTGTATaGATAACCATTTGCTGCCCACTTAAATTCTGTGAA | + |
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Preference number: 3 (lower is better) Translates to: WVNAQGYMWASV*ITICCPLKFCE Trigger: TTCACAGAATTTAAGTGGGCAGCAAATGGTTATGCATACACTGGCCCACATATATCCTTGTGCATTTACCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| 3UTR GCA 72 bp | CAAGGATATATGTGGGCCAGTGTATGCATAACCATTTaGTGCCCACTTAAATTCTGTGAACCTGTAGAATTT | + |
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Preference number: 3 (lower is better) Translates to: QGYMWASVCITI*CPLKFCEPVEF Trigger: AAATTCTACAGGTTCACAGAATTTAAGTGGGCAGCAAATGGTTATGCATACACTGGCCCACATATATCCTTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS-3UTR CCA 90 bp | TGGGTAAATGCACAAGGATATATGTGGGCCAGTGTATGCATAACCATTTGCTGCTTTCATTGCCACTGCTaGGCTCACCATTGTGCCAGA | + |
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Preference number: 4 (lower is better) Translates to: WVNAQGYMWASVCITICCFHCHC*AHHCAR Trigger: TCTGGCACAATGGTGAGCCCAGCAGTGGCAATGAAA...GCAGCAAATGGTTATGCATACACTGGCCCACATATATCCTTGTGCATTTACCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS-3UTR TCA 90 bp | TGCTGCCCACTTAAATTCTGTGAACCTGTAGAATTTCCCAGGTGTCTGTGTAATAGCTGCAGGAGATTCTaGGTAGGTGTGCAAGGAGTT | + |
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Preference number: 4 (lower is better) Translates to: CCPLKFCEPVEFPRCLCNSCRRF*VGVQGV Trigger: AACTCCTTGCACACCTACTCAGAATCTCCTGCAGCT...ATTACACAGACACCTGGGAAATTCTACAGGTTCACAGAATTTAAGTGGGCAGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS-3UTR TCA 90 bp | GTAAATGCACAAGGATATATGTGGGCCAGTGTATGCATAACCATTTGCTGCCCAGGGTGCTTCCATGGGTaGAACACTTTTTGTGCAGTT | + |
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Preference number: 4 (lower is better) Translates to: VNAQGYMWASVCITICCPGCFHG*NTFCAV Trigger: AACTGCACAAAAAGTGTTTCACCCATGGAAGCACCC...TGGGCAGCAAATGGTTATGCATACACTGGCCCACATATATCCTTGTGCATTTAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032248.8 |
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| CDS-3UTR GCA 90 bp | GTAAATGCACAAGGATATATGTGGGCCAGTGTATGCATAACCATTTGCTGCCCACCAGTGATGAAATCCTaGTCTTCCTGGCTTTGGATC | + |
|
Preference number: 4 (lower is better) Translates to: VNAQGYMWASVCITICCPPVMKS*SSWLWI Trigger: GATCCAAAGCCAGGAAGAGCAGGATTTCATCACTGG...TGGGCAGCAAATGGTTATGCATACACTGGCCCACATATATCCTTGTGCATTTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS-3UTR GCA 90 bp | GTAAATGCACAAGGATATATGTGGGCCAGTGTATGCATAACCATTTGCTGCCCAATTTTTCATTGCCACTaGTGGGCTCACCATTGTGCC | + |
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Preference number: 4 (lower is better) Translates to: VNAQGYMWASVCITICCPIFHCH*WAHHCA Trigger: GGCACAATGGTGAGCCCAGCAGTGGCAATGAAAAAT...TGGGCAGCAAATGGTTATGCATACACTGGCCCACATATATCCTTGTGCATTTAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS-3UTR GCA 90 bp | TGGGTAAATGCACAAGGATATATGTGGGCCAGTGTATGCATAACCATTTGCTGCGACTTTGTCCTCAGGTaGCAAGATACCCAAGTCTAT | + |
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Preference number: 4 (lower is better) Translates to: WVNAQGYMWASVCITICCDFVLR*QDTQVY Trigger: ATAGACTTGGGTATCTTGGCACCTGAGGACAAAGTC...GCAGCAAATGGTTATGCATACACTGGCCCACATATATCCTTGTGCATTTACCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032248.8 |
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| CDS-3UTR GCA 90 bp | TGCCCACTTAAATTCTGTGAACCTGTAGAATTTCCCAGGTGTCTGTGTAATGGTCCAGTGATGAAATCCTaGTCTTCCTGGCTTTGGATC | + |
|
Preference number: 4 (lower is better) Translates to: CPLKFCEPVEFPRCLCNGPVMKS*SSWLWI Trigger: GATCCAAAGCCAGGAAGAGCAGGATTTCATCACTGG...ACCATTACACAGACACCTGGGAAATTCTACAGGTTCACAGAATTTAAGTGGGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS-3UTR CCA 90 bp | TGCTGCCCACTTAAATTCTGTGAACCTGTAGAATTTCCCAGGTGTCTGTGTAATCTGATGAAGAAACTGTaGGAACCAAGTAGCAGTGGG | + |
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Preference number: 4 (lower is better) Translates to: CCPLKFCEPVEFPRCLCNLMKKL*EPSSSG Trigger: CCCACTGCTACTTGGTTCCCACAGTTTCTTCATCAG...ATTACACAGACACCTGGGAAATTCTACAGGTTCACAGAATTTAAGTGGGCAGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| 3UTR CAA 72 bp | GCTCAGGGCTCAGTTAGGTTTTGTCTGGGTTTCCATTaGTCACCCTTGGCTTGCTACAGAAAATGTTTGAAA | + |
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Preference number: 4 (lower is better) Translates to: AQGSVRFCLGFH*SPLACYRKCLK Trigger: TTTCAAACATTTTCTGTAGCAAGCCAAGGGTGACAAATGGAAACCCAGACAAAACCTAACTGAGCCCTGAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041779.13 |
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| CDS-3UTR TCA 90 bp | TGCTGCCCACTTAAATTCTGTGAACCTGTAGAATTTCCCAGGTGTCTGTGTAATAAGCAACTAAGAATGTaGTTGCCAGCAGCAGGAGAA | + |
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Preference number: 4 (lower is better) Translates to: CCPLKFCEPVEFPRCLCNKQLRM*LPAAGE Trigger: TTCTCCTGCTGCTGGCAATCACATTCTTAGTTGCTT...ATTACACAGACACCTGGGAAATTCTACAGGTTCACAGAATTTAAGTGGGCAGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS-3UTR CCA 90 bp | TGCCCACTTAAATTCTGTGAACCTGTAGAATTTCCCAGGTGTCTGTGTAATGGTAAATCCTGCTCTTCCTaGCTTTGGATCACCACTAGA | + |
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Preference number: 4 (lower is better) Translates to: CPLKFCEPVEFPRCLCNGKSCSS*LWITTR Trigger: TCTAGTGGTGATCCAAAGCCAGGAAGAGCAGGATTT...ACCATTACACAGACACCTGGGAAATTCTACAGGTTCACAGAATTTAAGTGGGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS-3UTR CCA 90 bp | CTTAAATTCTGTGAACCTGTAGAATTTCCCAGGTGTCTGTGTAATGGTTGGATATTTCATTGCCACTGCTaGGCTCACCATTGTGCCAGA | + |
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Preference number: 4 (lower is better) Translates to: LKFCEPVEFPRCLCNGWIFHCHC*AHHCAR Trigger: TCTGGCACAATGGTGAGCCCAGCAGTGGCAATGAAA...TATCCAACCATTACACAGACACCTGGGAAATTCTACAGGTTCACAGAATTTAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS-3UTR TCA 90 bp | GTAAATGCACAAGGATATATGTGGGCCAGTGTATGCATAACCATTTGCTGCCCACATTGTGCCAGAATGTaGTACTTTCTTCATATGGTG | + |
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Preference number: 4 (lower is better) Translates to: VNAQGYMWASVCITICCPHCARM*YFLHMV Trigger: CACCATATGAAGAAAGTATCACATTCTGGCACAATG...TGGGCAGCAAATGGTTATGCATACACTGGCCCACATATATCCTTGTGCATTTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS-3UTR CCA 90 bp | CTTAAATTCTGTGAACCTGTAGAATTTCCCAGGTGTCTGTGTAATGGTTGGATACTGATGAAGAAACTGTaGGAACCAAGTAGCAGTGGG | + |
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Preference number: 4 (lower is better) Translates to: LKFCEPVEFPRCLCNGWILMKKL*EPSSSG Trigger: CCCACTGCTACTTGGTTCCCACAGTTTCTTCATCAG...TATCCAACCATTACACAGACACCTGGGAAATTCTACAGGTTCACAGAATTTAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS-3UTR TCA 90 bp | AAACAGAAACAGATAGGTCAAGAGAACCTATCATACAATGGCATGAGTAAACAAAGCTGCAGGAGATTCTaGGTAGGTGTGCAAGGAGTT | + |
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Preference number: 4 (lower is better) Translates to: KQKQIGQENLSYNGMSKQSCRRF*VGVQGV Trigger: AACTCCTTGCACACCTACTCAGAATCTCCTGCAGCT...TTGTTTACTCATGCCATTGTATGATAGGTTCTCTTGACCTATCTGTTTCTGTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS-3UTR TCA 90 bp | TGCTGCCCACTTAAATTCTGTGAACCTGTAGAATTTCCCAGGTGTCTGTGTAATCATTGTGCCAGAATGTaGTACTTTCTTCATATGGTG | + |
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Preference number: 4 (lower is better) Translates to: CCPLKFCEPVEFPRCLCNHCARM*YFLHMV Trigger: CACCATATGAAGAAAGTATCACATTCTGGCACAATG...ATTACACAGACACCTGGGAAATTCTACAGGTTCACAGAATTTAAGTGGGCAGCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS-3UTR GCA 90 bp | AAACAGATAGGTCAAGAGAACCTATCATACAATGGCATGAGTAAACAAGATGGCCTGGGCTCACCATTGTaGCAGAATGTGATACTTTCT | + |
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Preference number: 4 (lower is better) Translates to: KQIGQENLSYNGMSKQDGLGSPL*QNVILS Trigger: AGAAAGTATCACATTCTGGCACAATGGTGAGCCCAG...GCCATCTTGTTTACTCATGCCATTGTATGATAGGTTCTCTTGACCTATCTGTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS-3UTR CCA 90 bp | GTAAATGCACAAGGATATATGTGGGCCAGTGTATGCATAACCATTTGCTGCCCAGATACTTTCTTCATATaGTGTCTGATCAACCCATTG | + |
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Preference number: 4 (lower is better) Translates to: VNAQGYMWASVCITICCPDTFFI*CLINPL Trigger: CAATGGGTTGATCAGACACCATATGAAGAAAGTATC...TGGGCAGCAAATGGTTATGCATACACTGGCCCACATATATCCTTGTGCATTTAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS-3UTR CCA 90 bp | AAACAGAAACAGATAGGTCAAGAGAACCTATCATACAATGGCATGAGTAAACAAAAATCCTGCTCTTCCTaGCTTTGGATCACCACTAGA | + |
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Preference number: 4 (lower is better) Translates to: KQKQIGQENLSYNGMSKQKSCSS*LWITTR Trigger: TCTAGTGGTGATCCAAAGCCAGGAAGAGCAGGATTT...TTGTTTACTCATGCCATTGTATGATAGGTTCTCTTGACCTATCTGTTTCTGTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS-3UTR TCA 90 bp | AAACAGATAGGTCAAGAGAACCTATCATACAATGGCATGAGTAAACAAGATGGCAGTTGGATTCATTCTTaGACTTCACTTCTGCATAAG | + |
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Preference number: 4 (lower is better) Translates to: KQIGQENLSYNGMSKQDGSWIHS*TSLLHK Trigger: CTTATGCAGAAGTGAAGTTCAAGAATGAATCCAACT...GCCATCTTGTTTACTCATGCCATTGTATGATAGGTTCTCTTGACCTATCTGTTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS-3UTR TCA 90 bp | AAACAGAAACAGATAGGTCAAGAGAACCTATCATACAATGGCATGAGTAAACAATTTGTCTTCCATGGGTaGAACACTTTTTGTGCAGTT | + |
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Preference number: 4 (lower is better) Translates to: KQKQIGQENLSYNGMSKQFVFHG*NTFCAV Trigger: AACTGCACAAAAAGTGTTTCACCCATGGAAGACAAA...TTGTTTACTCATGCCATTGTATGATAGGTTCTCTTGACCTATCTGTTTCTGTTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041779.13 |
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| CDS-3UTR TCA 90 bp | AAACAGAAACAGATAGGTCAAGAGAACCTATCATACAATGGCATGAGTAAACAAAGTTGGATTCATTCTTaGACTTCACTTCTGCATAAG | + |
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Preference number: 4 (lower is better) Translates to: KQKQIGQENLSYNGMSKQSWIHS*TSLLHK Trigger: CTTATGCAGAAGTGAAGTTCAAGAATGAATCCAACT...TTGTTTACTCATGCCATTGTATGATAGGTTCTCTTGACCTATCTGTTTCTGTTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS TCA 90 bp | CCAGTGATGAAATCCTGCTCTTCCTGGCTTTGGATCACCACTAGATaGGCACCCATGCGGGAGCAGTTCTCCTCACTCTTGTTCCAAGAT | + |
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Preference number: 5 (lower is better) Translates to: PVMKSCSSWLWITTR*APMREQFSSLLFQD Trigger: ATCTTGGAACAAGAGTGAGGAGAACTGCTCCCGCATGGGTGCTCATCTAGTGGTGATCCAAAGCCAGGAAGAGCAGGATTTCATCACTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 ENSMUST00000161365.8 |
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| CDS-3UTR CAA 90 bp | TGGGTAAATGCACAAGGATATATGTGGGCCAGTGTATGCATAACCATTTGCTGCTGTCTGATCAACCCATaGCCATTGCCGATGGCCTGT | + |
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Preference number: 5 (lower is better) Translates to: WVNAQGYMWASVCITICCCLINP*PLPMAC Trigger: ACAGGCCATCGGCAATGGCAATGGGTTGATCAGACA...GCAGCAAATGGTTATGCATACACTGGCCCACATATATCCTTGTGCATTTACCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS CCA 90 bp | AGCAGTTCTCCTCACTCTTGTTCCAAGATGCTGATGAAGAAACTGTaGGAACCAAGTAGCAGTGGGAACCAAATAGCCTCCAATCCTTTG | + |
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Preference number: 5 (lower is better) Translates to: SSSPHSCSKMLMKKL*EPSSSGNQIASNPL Trigger: CAAAGGATTGGAGGCTATTTGGTTCCCACTGCTACTTGGTTCCCACAGTTTCTTCATCAGCATCTTGGAACAAGAGTGAGGAGAACTGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 ENSMUST00000161365.8 |
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| CDS-3UTR CAA 90 bp | GTAAATGCACAAGGATATATGTGGGCCAGTGTATGCATAACCATTTGCTGCCCAATAGCCTCCAATCCTTaGGGCAACAGCTCCAGACTT | + |
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Preference number: 5 (lower is better) Translates to: VNAQGYMWASVCITICCPIASNP*GNSSRL Trigger: AAGTCTGGAGCTGTTGCCCAAAGGATTGGAGGCTAT...TGGGCAGCAAATGGTTATGCATACACTGGCCCACATATATCCTTGTGCATTTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS-3UTR CAA 90 bp | TGCTGCCCACTTAAATTCTGTGAACCTGTAGAATTTCCCAGGTGTCTGTGTAATCAACAGCTCCAGACTTaGTCCTCAGGTGCCAAGATA | + |
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Preference number: 5 (lower is better) Translates to: CCPLKFCEPVEFPRCLCNQQLQT*SSGAKI Trigger: TATCTTGGCACCTGAGGACAAAGTCTGGAGCTGTTG...ATTACACAGACACCTGGGAAATTCTACAGGTTCACAGAATTTAAGTGGGCAGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032248.8 |
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| CDS-3UTR CAA 90 bp | TGCCCACTTAAATTCTGTGAACCTGTAGAATTTCCCAGGTGTCTGTGTAATGGTGTAGCACATTTTTCATaGCCACTGCTGGGCTCACCA | + |
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Preference number: 5 (lower is better) Translates to: CPLKFCEPVEFPRCLCNGVAHFS*PLLGSP Trigger: TGGTGAGCCCAGCAGTGGCAATGAAAAATGTGCTAC...ACCATTACACAGACACCTGGGAAATTCTACAGGTTCACAGAATTTAAGTGGGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS-3UTR CAA 90 bp | TGGGTAAATGCACAAGGATATATGTGGGCCAGTGTATGCATAACCATTTGCTGCCAGTTCTCCTCACTCTaGTTCCAAGATGCTGATGAA | + |
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Preference number: 5 (lower is better) Translates to: WVNAQGYMWASVCITICCQFSSL*FQDADE Trigger: TTCATCAGCATCTTGGAACAAGAGTGAGGAGAACTG...GCAGCAAATGGTTATGCATACACTGGCCCACATATATCCTTGTGCATTTACCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS-3UTR CAA 90 bp | CTTAAATTCTGTGAACCTGTAGAATTTCCCAGGTGTCTGTGTAATGGTTGGATATGTCTGATCAACCCATaGCCATTGCCGATGGCCTGT | + |
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Preference number: 5 (lower is better) Translates to: LKFCEPVEFPRCLCNGWICLINP*PLPMAC Trigger: ACAGGCCATCGGCAATGGCAATGGGTTGATCAGACA...TATCCAACCATTACACAGACACCTGGGAAATTCTACAGGTTCACAGAATTTAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS-3UTR CAA 90 bp | CTTAAATTCTGTGAACCTGTAGAATTTCCCAGGTGTCTGTGTAATGGTTGGATAGTAGCACATTTTTCATaGCCACTGCTGGGCTCACCA | + |
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Preference number: 5 (lower is better) Translates to: LKFCEPVEFPRCLCNGWIVAHFS*PLLGSP Trigger: TGGTGAGCCCAGCAGTGGCAATGAAAAATGTGCTAC...TATCCAACCATTACACAGACACCTGGGAAATTCTACAGGTTCACAGAATTTAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS-3UTR CAA 90 bp | TGGGTAAATGCACAAGGATATATGTGGGCCAGTGTATGCATAACCATTTGCTGCTGGGTGAAACACTTTTaGTGCAGTTCAATTCATTGT | + |
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Preference number: 5 (lower is better) Translates to: WVNAQGYMWASVCITICCWVKHF*CSSIHC Trigger: ACAATGAATTGAACTGCACAAAAAGTGTTTCACCCA...GCAGCAAATGGTTATGCATACACTGGCCCACATATATCCTTGTGCATTTACCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS-3UTR CAA 90 bp | AAACAGAAACAGATAGGTCAAGAGAACCTATCATACAATGGCATGAGTAAACAAATAGCCTCCAATCCTTaGGGCAACAGCTCCAGACTT | + |
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Preference number: 5 (lower is better) Translates to: KQKQIGQENLSYNGMSKQIASNP*GNSSRL Trigger: AAGTCTGGAGCTGTTGCCCAAAGGATTGGAGGCTAT...TTGTTTACTCATGCCATTGTATGATAGGTTCTCTTGACCTATCTGTTTCTGTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS-3UTR CAA 90 bp | CTTAAATTCTGTGAACCTGTAGAATTTCCCAGGTGTCTGTGTAATGGTTGGATACAGTTCTCCTCACTCTaGTTCCAAGATGCTGATGAA | + |
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Preference number: 5 (lower is better) Translates to: LKFCEPVEFPRCLCNGWIQFSSL*FQDADE Trigger: TTCATCAGCATCTTGGAACAAGAGTGAGGAGAACTG...TATCCAACCATTACACAGACACCTGGGAAATTCTACAGGTTCACAGAATTTAAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS-3UTR CAA 90 bp | AAACAGAAACAGATAGGTCAAGAGAACCTATCATACAATGGCATGAGTAAACAATGGGTGAAACACTTTTaGTGCAGTTCAATTCATTGT | + |
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Preference number: 5 (lower is better) Translates to: KQKQIGQENLSYNGMSKQWVKHF*CSSIHC Trigger: ACAATGAATTGAACTGCACAAAAAGTGTTTCACCCA...TTGTTTACTCATGCCATTGTATGATAGGTTCTCTTGACCTATCTGTTTCTGTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 |
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| CDS GCA 72 bp | CTTCCTGGCTTTGGATCACCACTAGATGAGCACCCATaGGGGAGCAGTTCTCCTCACTCTTGTTCCAAGATG | + |
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Preference number: 6 (lower is better) Translates to: LPGFGSPLDEHP*GSSSPHSCSKM Trigger: CATCTTGGAACAAGAGTGAGGAGAACTGCTCCCGCATGGGTGCTCATCTAGTGGTGATCCAAAGCCAGGAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 ENSMUST00000161365.8 |
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| CDS CAA 72 bp | CCAAGTAGCAGTGGGAACCAAATAGCCTCCAATCCTTaGGGCAACAGCTCCAGACTTTGTCCTCAGGTGCCA | + |
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Preference number: 6 (lower is better) Translates to: PSSSGNQIASNP*GNSSRLCPQVP Trigger: TGGCACCTGAGGACAAAGTCTGGAGCTGTTGCCCAAAGGATTGGAGGCTATTTGGTTCCCACTGCTACTTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032248.8 |
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| CDS CAA 90 bp | CTGTGGGAACCAAGTAGCAGTGGGAACCAAATAGCCTCCAATCCTTaGGGCAACAGCTCCAGACTTTGTCCTCAGGTGCCAAGATACCCA | + |
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Preference number: 6 (lower is better) Translates to: LWEPSSSGNQIASNP*GNSSRLCPQVPRYP Trigger: TGGGTATCTTGGCACCTGAGGACAAAGTCTGGAGCTGTTGCCCAAAGGATTGGAGGCTATTTGGTTCCCACTGCTACTTGGTTCCCACAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032248.8 |
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| CDS CAA 72 bp | CCAAGTAGCAGTGGGAACCAAATAGCCTCCAATCCTTaGGGCAACAGCTCCAGACTTTGTCTTCCATGGGTG | + |
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Preference number: 6 (lower is better) Translates to: PSSSGNQIASNP*GNSSRLCLPWV Trigger: CACCCATGGAAGACAAAGTCTGGAGCTGTTGCCCAAAGGATTGGAGGCTATTTGGTTCCCACTGCTACTTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041779.13 ENSMUST00000161365.8 |
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| CDS CAA 90 bp | CTGTGGGAACCAAGTAGCAGTGGGAACCAAATAGCCTCCAATCCTTaGGGCAACAGCTCCAGACTTTGTCTTCCATGGGTGAAACACTTT | + |
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Preference number: 6 (lower is better) Translates to: LWEPSSSGNQIASNP*GNSSRLCLPWVKHF Trigger: AAAGTGTTTCACCCATGGAAGACAAAGTCTGGAGCTGTTGCCCAAAGGATTGGAGGCTATTTGGTTCCCACTGCTACTTGGTTCCCACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041779.13 ENSMUST00000161365.8 |
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| CDS TCA 72 bp | ACGGATAGGTTTCTCTCTGGGAGCTGCAGGAGATTCTaGGTAGGTGTGCAAGGAGTTGGATTCATTCTTGAA | + |
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Preference number: 6 (lower is better) Translates to: TDRFLSGSCRRF*VGVQGVGFILE Trigger: TTCAAGAATGAATCCAACTCCTTGCACACCTACTCAGAATCTCCTGCAGCTCCCAGAGAGAAACCTATCCGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 ENSMUST00000161365.8 ENSMUST00000161636.8 |
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| CDS CAA 72 bp | GTAGCACATTTTTCATTGCCACTGCTGGGCTCACCATaGTGCCAGAATGTGATACTTTCTTCATATGGTGTC | + |
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Preference number: 6 (lower is better) Translates to: VAHFSLPLLGSP*CQNVILSSYGV Trigger: GACACCATATGAAGAAAGTATCACATTCTGGCACAATGGTGAGCCCAGCAGTGGCAATGAAAAATGTGCTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000032248.8 ENSMUST00000041779.13 ENSMUST00000161365.8 |
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