Pregenerated sensors for CLEC4A1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049037Ensembl transcript IDs: ENSMUST00000060484.9
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CGTGAGGAGAGAGATGCATGTGCTTTCTGTGTGTGCACTAAGGGGTCCCTAGCATGTACAAAGGTGAGCTaGTGCTCTCATAAATGGAAG | + |
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Preference number: 2 (lower is better) Translates to: REERDACAFCVCTKGSLACTKVS*CSHKWK Trigger: CTTCCATTTATGAGAGCATCAGCTCACCTTTGTACA...TGCTAGGGACCCCTTAGTGCACACACAGAAAGCACATGCATCTCTCTCCTCACG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| 3UTR-3UTR TCA 90 bp | CGTGAGGAGAGAGATGCATGTGCTTTCTGTGTGTGCACTAAGGGGTCCCTAGCAGAACGTGTACAAAGGTaGGCTGATGCTCTCATAAAT | + |
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Preference number: 2 (lower is better) Translates to: REERDACAFCVCTKGSLAERVQR*ADALIN Trigger: ATTTATGAGAGCATCAGCTCACCTTTGTACACGTTC...TGCTAGGGACCCCTTAGTGCACACACAGAAAGCACATGCATCTCTCTCCTCACG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| 3UTR TCA 72 bp | CTGCAGACATCTCTTACACATAATTTACTAAGAAGCTaGCTGGTGGTGGTAGTGCATGTCCTTAATTCCAGC | + |
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Preference number: 3 (lower is better) Translates to: LQTSLTHNLLRS*LVVVVHVLNSS Trigger: GCTGGAATTAAGGACATGCACTACCACCACCAGTCAGCTTCTTAGTAAATTATGTGTAAGAGATGTCTGCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| 3UTR TCA 72 bp | TTTATGAATGAGGAAATGAATGAACGTGTACAAAGGTaGGCTGATGCTCTCATAAATGGAAGGACCGGTTCC | + |
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Preference number: 3 (lower is better) Translates to: FMNEEMNERVQR*ADALINGRTGS Trigger: GGAACCGGTCCTTCCATTTATGAGAGCATCAGCTCACCTTTGTACACGTTCATTCATTTCCTCATTCATAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| 3UTR TCA 72 bp | GAATCTGGCTTTCTGATACAATTCCAAGTCCCTGTTTaGTTCCTAAGAGGATCAAATGAAGAACTTCCTAGC | + |
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Preference number: 3 (lower is better) Translates to: ESGFLIQFQVPV*FLRGSNEELPS Trigger: GCTAGGAAGTTCTTCATTTGATCCTCTTAGGAATCAAACAGGGACTTGGAATTGTATCAGAAAGCCAGATTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| CDS-3UTR CCA 90 bp | GACAGGCGTGAGGAGAGAGATGCATGTGCTTTCTGTGTGTGCACTAAGGGGTCCATTCAGTGTTGCCACTaGGTTCATCTGAGTGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: DRREERDACAFCVCTKGSIQCCH*VHLSAR Trigger: CCTGGCACTCAGATGAACCCAGTGGCAACACTGAAT...GGACCCCTTAGTGCACACACAGAAAGCACATGCATCTCTCTCCTCACGCCTGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| CDS-3UTR GCA 90 bp | GACAGGCGTGAGGAGAGAGATGCATGTGCTTTCTGTGTGTGCACTAAGGGGTCCTTGGTGATGAAATCCTaGTCTTCCTGGCTCTGGATC | + |
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Preference number: 4 (lower is better) Translates to: DRREERDACAFCVCTKGSLVMKS*SSWLWI Trigger: GATCCAGAGCCAGGAAGAGCAGGATTTCATCACCAA...GGACCCCTTAGTGCACACACAGAAAGCACATGCATCTCTCTCCTCACGCCTGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| CDS-3UTR TCA 90 bp | GACAGGCGTGAGGAGAGAGATGCATGTGCTTTCTGTGTGTGCACTAAGGGGTCCCCAGGGTTACTTTTGTaGATAGTGGTCTTCTTTGGG | + |
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Preference number: 4 (lower is better) Translates to: DRREERDACAFCVCTKGSPGLLL*IVVFFG Trigger: CCCAAAGAAGACCACTATTCACAAAAGTAACCCTGG...GGACCCCTTAGTGCACACACAGAAAGCACATGCATCTCTCTCCTCACGCCTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| CDS-3UTR CCA 90 bp | GACAGGCGTGAGGAGAGAGATGCATGTGCTTTCTGTGTGTGCACTAAGGGGTCCTGGCTTCCAATTCTTTaGACAACAGCTCCAGACTTT | + |
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Preference number: 4 (lower is better) Translates to: DRREERDACAFCVCTKGSWLPIL*TTAPDF Trigger: AAAGTCTGGAGCTGTTGTCCAAAGAATTGGAAGCCA...GGACCCCTTAGTGCACACACAGAAAGCACATGCATCTCTCTCCTCACGCCTGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| CDS-3UTR TCA 90 bp | AAGAGAAATCTAAGAATCTGGCTTTCTGATACAATTCCAAGTCCCTGTTTGATTGCAGATGAGCACCCCTaGGGGAGCACTTCTCTTCAC | + |
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Preference number: 4 (lower is better) Translates to: KRNLRIWLSDTIPSPCLIADEHP*GSTSLH Trigger: GTGAAGAGAAGTGCTCCCTCAGGGGTGCTCATCTGC...AATCAAACAGGGACTTGGAATTGTATCAGAAAGCCAGATTCTTAGATTTCTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| CDS-3UTR CCA 90 bp | AAGAGAAATCTAAGAATCTGGCTTTCTGATACAATTCCAAGTCCCTGTTTGATTCACTGCCATTGTCCATaGCCCTTTGGATCTGACAGC | + |
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Preference number: 4 (lower is better) Translates to: KRNLRIWLSDTIPSPCLIHCHCP*PFGSDS Trigger: GCTGTCAGATCCAAAGGGCCATGGACAATGGCAGTG...AATCAAACAGGGACTTGGAATTGTATCAGAAAGCCAGATTCTTAGATTTCTCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| CDS-3UTR CCA 90 bp | AAGAGAAATCTAAGAATCTGGCTTTCTGATACAATTCCAAGTCCCTGTTTGATTAGGCAAGAAGCAGCCTaGGAAAGCCAGGGTTACTTT | + |
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Preference number: 4 (lower is better) Translates to: KRNLRIWLSDTIPSPCLIRQEAA*ESQGYF Trigger: AAAGTAACCCTGGCTTTCCCAGGCTGCTTCTTGCCT...AATCAAACAGGGACTTGGAATTGTATCAGAAAGCCAGATTCTTAGATTTCTCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| CDS-3UTR CCA 90 bp | AAGAGAAATCTAAGAATCTGGCTTTCTGATACAATTCCAAGTCCCTGTTTGATTAAATCCTGCTCTTCCTaGCTCTGGATCACCAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: KRNLRIWLSDTIPSPCLIKSCSS*LWITSR Trigger: TCTGCTGGTGATCCAGAGCCAGGAAGAGCAGGATTT...AATCAAACAGGGACTTGGAATTGTATCAGAAAGCCAGATTCTTAGATTTCTCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| CDS-3UTR TCA 90 bp | AAGAGAAATCTAAGAATCTGGCTTTCTGATACAATTCCAAGTCCCTGTTTGATTCCTGAGGAAACAGGTTaGTTTTTGAAGTTCACGTCA | + |
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Preference number: 4 (lower is better) Translates to: KRNLRIWLSDTIPSPCLIPEETG*FLKFTS Trigger: TGACGTGAACTTCAAAAATCAACCTGTTTCCTCAGG...AATCAAACAGGGACTTGGAATTGTATCAGAAAGCCAGATTCTTAGATTTCTCTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| CDS-3UTR GCA 90 bp | AAGAGAAATCTAAGAATCTGGCTTTCTGATACAATTCCAAGTCCCTGTTTGATTCACAAAATTCAGTGTTaGCACTGGGTTCATCTGAGT | + |
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Preference number: 4 (lower is better) Translates to: KRNLRIWLSDTIPSPCLIHKIQC*HWVHLS Trigger: ACTCAGATGAACCCAGTGGCAACACTGAATTTTGTG...AATCAAACAGGGACTTGGAATTGTATCAGAAAGCCAGATTCTTAGATTTCTCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| CDS-3UTR CCA 90 bp | AAGAGAAATCTAAGAATCTGGCTTTCTGATACAATTCCAAGTCCCTGTTTGATTGCAGTGGGAATCAAATaGCTTCCAATTCTTTGGACA | + |
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Preference number: 4 (lower is better) Translates to: KRNLRIWLSDTIPSPCLIAVGIK*LPILWT Trigger: TGTCCAAAGAATTGGAAGCCATTTGATTCCCACTGC...AATCAAACAGGGACTTGGAATTGTATCAGAAAGCCAGATTCTTAGATTTCTCTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| CDS-3UTR CCA 90 bp | AAGAGAAATCTAAGAATCTGGCTTTCTGATACAATTCCAAGTCCCTGTTTGATTGGCATTTTGATCATATaGTGTCTGATCAACCCACTG | + |
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Preference number: 4 (lower is better) Translates to: KRNLRIWLSDTIPSPCLIGILII*CLINPL Trigger: CAGTGGGTTGATCAGACACCATATGATCAAAATGCC...AATCAAACAGGGACTTGGAATTGTATCAGAAAGCCAGATTCTTAGATTTCTCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| CDS TCA 90 bp | TGGTGTCTGATCAACCCACTGCCATTGTCCATGGCCCTTTGGATCTaGCAGCCCCACATAATAAGCAGCACGAGGGTTCAGAGTGTTGGT | + |
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Preference number: 5 (lower is better) Translates to: WCLINPLPLSMALWI*QPHIISSTRVQSVG Trigger: ACCAACACTCTGAACCCTCGTGCTGCTTATTATGTGGGGCTGTCAGATCCAAAGGGCCATGGACAATGGCAGTGGGTTGATCAGACACCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| CDS-3UTR CAA 90 bp | GACAGGCGTGAGGAGAGAGATGCATGTGCTTTCTGTGTGTGCACTAAGGGGTCCATGGCTTCCAATTCTTaGGACAACAGCTCCAGACTT | + |
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Preference number: 5 (lower is better) Translates to: DRREERDACAFCVCTKGSMASNS*DNSSRL Trigger: AAGTCTGGAGCTGTTGTCCAAAGAATTGGAAGCCAT...GGACCCCTTAGTGCACACACAGAAAGCACATGCATCTCTCTCCTCACGCCTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| CDS TCA 90 bp | ATCCACAAGGCAAGAAGCAGCCTGGGAAAGCCAGGGTTACTTTTGTaGATAGTGGTCTTCTTTGGGAGAGCTGAAGACGAGTCTGAGACG | + |
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Preference number: 5 (lower is better) Translates to: IHKARSSLGKPGLLL*IVVFFGRAEDESET Trigger: CGTCTCAGACTCGTCTTCAGCTCTCCCAAAGAAGACCACTATTCACAAAAGTAACCCTGGCTTTCCCAGGCTGCTTCTTGCCTTGTGGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| CDS-3UTR CAA 90 bp | CGTGAGGAGAGAGATGCATGTGCTTTCTGTGTGTGCACTAAGGGGTCCCTAGCAACACAAAATTCAGTGTaGCCACTGGGTTCATCTGAG | + |
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Preference number: 5 (lower is better) Translates to: REERDACAFCVCTKGSLATQNSV*PLGSSE Trigger: CTCAGATGAACCCAGTGGCAACACTGAATTTTGTGT...TGCTAGGGACCCCTTAGTGCACACACAGAAAGCACATGCATCTCTCTCCTCACG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| CDS TCA 90 bp | AGCACTTCTCTTCACTCTTACTCCAGGATGCAGTGTCACGGGAAGTaGAGTAGCAGTGGGAATCAAATGGCTTCCAATTCTTTGGACAAC | + |
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Preference number: 5 (lower is better) Translates to: STSLHSYSRMQCHGK*SSSGNQMASNSLDN Trigger: GTTGTCCAAAGAATTGGAAGCCATTTGATTCCCACTGCTACTTCACTTCCCGTGACACTGCATCCTGGAGTAAGAGTGAAGAGAAGTGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| CDS-3UTR CAA 90 bp | CGTGAGGAGAGAGATGCATGTGCTTTCTGTGTGTGCACTAAGGGGTCCCTAGCACAACAGAGAATAAGATaGCCAACAGCAGGAAAAATA | + |
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Preference number: 5 (lower is better) Translates to: REERDACAFCVCTKGSLAQQRIR*PTAGKI Trigger: TATTTTTCCTGCTGTTGGCAATCTTATTCTCTGTTG...TGCTAGGGACCCCTTAGTGCACACACAGAAAGCACATGCATCTCTCTCCTCACG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| CDS-3UTR CAA 90 bp | AAGAGAAATCTAAGAATCTGGCTTTCTGATACAATTCCAAGTCCCTGTTTGATTCAACAGCTCCAGACTTaGTCTTCTACAGACGAGTGG | + |
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Preference number: 5 (lower is better) Translates to: KRNLRIWLSDTIPSPCLIQQLQT*SSTDEW Trigger: CCACTCGTCTGTAGAAGACAAAGTCTGGAGCTGTTG...AATCAAACAGGGACTTGGAATTGTATCAGAAAGCCAGATTCTTAGATTTCTCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| CDS-3UTR CAA 90 bp | AAGAGAAATCTAAGAATCTGGCTTTCTGATACAATTCCAAGTCCCTGTTTGATTCCAGGATGTGGCATTTaGATCATATGGTGTCTGATC | + |
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Preference number: 5 (lower is better) Translates to: KRNLRIWLSDTIPSPCLIPGCGI*IIWCLI Trigger: GATCAGACACCATATGATCAAAATGCCACATCCTGG...AATCAAACAGGGACTTGGAATTGTATCAGAAAGCCAGATTCTTAGATTTCTCTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| CDS GCA 72 bp | CCTGAGGGAGCACTTCTCTTCACTCTTACTCCAGGATaGAGTGTCACGGGAAGTGAAGTAGCAGTGGGAATC | + |
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Preference number: 6 (lower is better) Translates to: PEGALLFTLTPG*SVTGSEVAVGI Trigger: GATTCCCACTGCTACTTCACTTCCCGTGACACTGCATCCTGGAGTAAGAGTGAAGAGAAGTGCTCCCTCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| CDS TCA 72 bp | GCAAGAAGCAGCCTGGGAAAGCCAGGGTTACTTTTGTaGATAGTGGTCTTCTTTGGGAGAGCTGAAGACGAG | + |
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Preference number: 6 (lower is better) Translates to: ARSSLGKPGLLL*IVVFFGRAEDE Trigger: CTCGTCTTCAGCTCTCCCAAAGAAGACCACTATTCACAAAAGTAACCCTGGCTTTCCCAGGCTGCTTCTTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| CDS TCA 72 bp | CTTCACTCTTACTCCAGGATGCAGTGTCACGGGAAGTaGAGTAGCAGTGGGAATCAAATGGCTTCCAATTCT | + |
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Preference number: 6 (lower is better) Translates to: LHSYSRMQCHGK*SSSGNQMASNS Trigger: AGAATTGGAAGCCATTTGATTCCCACTGCTACTTCACTTCCCGTGACACTGCATCCTGGAGTAAGAGTGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| CDS CCA 72 bp | AGTGTCACGGGAAGTGAAGTAGCAGTGGGAATCAAATaGCTTCCAATTCTTTGGACAACAGCTCCAGACTTT | + |
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Preference number: 6 (lower is better) Translates to: SVTGSEVAVGIK*LPILWTTAPDF Trigger: AAAGTCTGGAGCTGTTGTCCAAAGAATTGGAAGCCATTTGATTCCCACTGCTACTTCACTTCCCGTGACACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| CDS TCA 72 bp | CACAACACAAAATTCAGTGTTGCCACTGGGTTCATCTaGGTGCCAGGATGTGGCATTTTGATCATATGGTGT | + |
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Preference number: 6 (lower is better) Translates to: HNTKFSVATGFI*VPGCGILIIWC Trigger: ACACCATATGATCAAAATGCCACATCCTGGCACTCAGATGAACCCAGTGGCAACACTGAATTTTGTGTTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| CDS GCA 72 bp | TTGGATGATAACTTAGCACAACACAAAATTCAGTGTTaGCACTGGGTTCATCTGAGTGCCAGGATGTGGCAT | + |
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Preference number: 6 (lower is better) Translates to: LDDNLAQHKIQC*HWVHLSARMWH Trigger: ATGCCACATCCTGGCACTCAGATGAACCCAGTGGCAACACTGAATTTTGTGTTGTGCTAAGTTATCATCCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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| CDS CCA 72 bp | GATAACTTAGCACAACACAAAATTCAGTGTTGCCACTaGGTTCATCTGAGTGCCAGGATGTGGCATTTTGAT | + |
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Preference number: 6 (lower is better) Translates to: DNLAQHKIQCCH*VHLSARMWHFD Trigger: ATCAAAATGCCACATCCTGGCACTCAGATGAACCCAGTGGCAACACTGAATTTTGTGTTGTGCTAAGTTATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060484.9 |
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