RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CLEC3A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000008874

Ensembl transcript IDs: ENSMUST00000009018.4

Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp GACTGGGAGAACAGGACACAGTTTTCCCGCTTGCCACCACTTGGCTaGGCACGGTCCCAGTTGAGGAAGGAGACAGCGAATCCGTGGACA +
Preference number: 5 (lower is better)
Translates to: DWENRTQFSRLPPLG*ARSQLRKETANPWT
Trigger: TGTCCACGGATTCGCTGTCTCCTTCCTCAACTGGGACCGTGCCCAGCCAAGTGGTGGCAAGCGGGAAAACTGTGTCCTGTTCTCCCAGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS TCA 90 bp CACAGTTTTCCCGCTTGCCACCACTTGGCTGGGCACGGTCCCAGTTaGGGAAGGAGACAGCGAATCCGTGGACATCGAGGAACTTGCCTT +
Preference number: 5 (lower is better)
Translates to: HSFPACHHLAGHGPS*GRRQRIRGHRGTCL
Trigger: AAGGCAAGTTCCTCGATGTCCACGGATTCGCTGTCTCCTTCCTCAACTGGGACCGTGCCCAGCCAAGTGGTGGCAAGCGGGAAAACTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS TCA 90 bp TCGCTTGCTACTGCGACAGGCTTCGTCGCTCCATTTCCCCTGAGCTaGCTGGGAGAACAGGACACAGTTTTCCCGCTTGCCACCACTTGG +
Preference number: 5 (lower is better)
Translates to: SLATATGFVAPFPLS*LGEQDTVFPLATTW
Trigger: CCAAGTGGTGGCAAGCGGGAAAACTGTGTCCTGTTCTCCCAGTCAGCTCAGGGGAAATGGAGCGACGAAGCCTGTCGCAGTAGCAAGCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS TCA 90 bp ATGTATCGCTTGCTACTGCGACAGGCTTCGTCGCTCCATTTCCCCTaGGCTGACTGGGAGAACAGGACACAGTTTTCCCGCTTGCCACCA +
Preference number: 5 (lower is better)
Translates to: MYRLLLRQASSLHFP*ADWENRTQFSRLPP
Trigger: TGGTGGCAAGCGGGAAAACTGTGTCCTGTTCTCCCAGTCAGCTCAGGGGAAATGGAGCGACGAAGCCTGTCGCAGTAGCAAGCGATACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS CCA 90 bp TCAGGTCGTCATCCTTTGCTTTCACGCGGCGTTTGCTGTGTTTCCTaGCTTTCATTCGAGATGGGTAGCCGTCGGTCTGGTCCAGGAGTA +
Preference number: 5 (lower is better)
Translates to: SGRHPLLSRGVCCVS*LSFEMGSRRSGPGV
Trigger: TACTCCTGGACCAGACCGACGGCTACCCATCTCGAATGAAAGCCAGGAAACACAGCAAACGCCGCGTGAAAGCAAAGGATGACGACCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS TCA 90 bp TGCATCTCCTTCAAGGCGTTGACTTCCCGCCACAGCTTTTCAACTTaGGATTTCAGGTCGTCATCCTTTGCTTTCACGCGGCGTTTGCTG +
Preference number: 5 (lower is better)
Translates to: CISFKALTSRHSFST*DFRSSSFAFTRRLL
Trigger: CAGCAAACGCCGCGTGAAAGCAAAGGATGACGACCTGAAATCTCAAGTTGAAAAGCTGTGGCGGGAAGTCAACGCCTTGAAGGAGATGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS TCA 90 bp CTCGGAGACAGACTGTCTGCAGAGCTTGCATCTCCTTCAAGGCGTTaGCTTCCCGCCACAGCTTTTCAACTTGAGATTTCAGGTCGTCAT +
Preference number: 5 (lower is better)
Translates to: LGDRLSAELASPSRR*LPATAFQLEISGRH
Trigger: ATGACGACCTGAAATCTCAAGTTGAAAAGCTGTGGCGGGAAGTCAACGCCTTGAAGGAGATGCAAGCTCTGCAGACAGTCTGTCTCCGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS GCA 90 bp CAACTTGAGATTTCAGGTCGTCATCCTTTGCTTTCACGCGGCGTTTaGTGTGTTTCCTGGCTTTCATTCGAGATGGGTAGCCGTCGGTCT +
Preference number: 5 (lower is better)
Translates to: QLEISGRHPLLSRGV*CVSWLSFEMGSRRS
Trigger: AGACCGACGGCTACCCATCTCGAATGAAAGCCAGGAAACACAGCAAACGCCGCGTGAAAGCAAAGGATGACGACCTGAAATCTCAAGTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS TCA 90 bp GGAAATGCAGTCTTCGTTGGCTTCGTGGTAATGCTTGAGGCCTTCTaGAGCAAGGTAGCACTTCTTATGAACTTTGGTGCCTCGGAGACA +
Preference number: 5 (lower is better)
Translates to: GNAVFVGFVVMLEAF*SKVALLMNFGASET
Trigger: TGTCTCCGAGGCACCAAAGTTCATAAGAAGTGCTACCTTGCTTCAGAAGGCCTCAAGCATTACCACGAAGCCAACGAAGACTGCATTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS GCA 90 bp TTCCCGCCACAGCTTTTCAACTTGAGATTTCAGGTCGTCATCCTTTaGTTTCACGCGGCGTTTGCTGTGTTTCCTGGCTTTCATTCGAGA +
Preference number: 5 (lower is better)
Translates to: FPPQLFNLRFQVVIL*FHAAFAVFPGFHSR
Trigger: TCTCGAATGAAAGCCAGGAAACACAGCAAACGCCGCGTGAAAGCAAAGGATGACGACCTGAAATCTCAAGTTGAAAAGCTGTGGCGGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS TCA 72 bp CCCGCTTGCCACCACTTGGCTGGGCACGGTCCCAGTTaGGGAAGGAGACAGCGAATCCGTGGACATCGAGGA +
Preference number: 6 (lower is better)
Translates to: PACHHLAGHGPS*GRRQRIRGHRG
Trigger: TCCTCGATGTCCACGGATTCGCTGTCTCCTTCCTCAACTGGGACCGTGCCCAGCCAAGTGGTGGCAAGCGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS CAA 72 bp TCCCGCTTGCCACCACTTGGCTGGGCACGGTCCCAGTaGAGGAAGGAGACAGCGAATCCGTGGACATCGAGG +
Preference number: 6 (lower is better)
Translates to: SRLPPLGWARSQ*RKETANPWTSR
Trigger: CCTCGATGTCCACGGATTCGCTGTCTCCTTCCTCAACTGGGACCGTGCCCAGCCAAGTGGTGGCAAGCGGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS CCA 72 bp GGAGAACAGGACACAGTTTTCCCGCTTGCCACCACTTaGCTGGGCACGGTCCCAGTTGAGGAAGGAGACAGC +
Preference number: 6 (lower is better)
Translates to: GEQDTVFPLATT*LGTVPVEEGDS
Trigger: GCTGTCTCCTTCCTCAACTGGGACCGTGCCCAGCCAAGTGGTGGCAAGCGGGAAAACTGTGTCCTGTTCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS CAA 90 bp ACACAGTTTTCCCGCTTGCCACCACTTGGCTGGGCACGGTCCCAGTaGAGGAAGGAGACAGCGAATCCGTGGACATCGAGGAACTTGCCT +
Preference number: 6 (lower is better)
Translates to: TQFSRLPPLGWARSQ*RKETANPWTSRNLP
Trigger: AGGCAAGTTCCTCGATGTCCACGGATTCGCTGTCTCCTTCCTCAACTGGGACCGTGCCCAGCCAAGTGGTGGCAAGCGGGAAAACTGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS TCA 72 bp ACTGCGACAGGCTTCGTCGCTCCATTTCCCCTGAGCTaGCTGGGAGAACAGGACACAGTTTTCCCGCTTGCC +
Preference number: 6 (lower is better)
Translates to: TATGFVAPFPLS*LGEQDTVFPLA
Trigger: GGCAAGCGGGAAAACTGTGTCCTGTTCTCCCAGTCAGCTCAGGGGAAATGGAGCGACGAAGCCTGTCGCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS TCA 72 bp TTGCTACTGCGACAGGCTTCGTCGCTCCATTTCCCCTaGGCTGACTGGGAGAACAGGACACAGTTTTCCCGC +
Preference number: 6 (lower is better)
Translates to: LLLRQASSLHFP*ADWENRTQFSR
Trigger: GCGGGAAAACTGTGTCCTGTTCTCCCAGTCAGCTCAGGGGAAATGGAGCGACGAAGCCTGTCGCAGTAGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS CCA 72 bp AACAGGACACAGTTTTCCCGCTTGCCACCACTTGGCTaGGCACGGTCCCAGTTGAGGAAGGAGACAGCGAAT +
Preference number: 6 (lower is better)
Translates to: NRTQFSRLPPLG*ARSQLRKETAN
Trigger: ATTCGCTGTCTCCTTCCTCAACTGGGACCGTGCCCAGCCAAGTGGTGGCAAGCGGGAAAACTGTGTCCTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS CCA 72 bp CGTCGGAATTCCTGGGGACAACCAGGGTCCCTCCCTTaGAAATGCAGTCTTCGTTGGCTTCGTGGTAATGCT +
Preference number: 6 (lower is better)
Translates to: RRNSWGQPGSLP*KCSLRWLRGNA
Trigger: AGCATTACCACGAAGCCAACGAAGACTGCATTTCCAAGGGAGGGACCCTGGTTGTCCCCAGGAATTCCGACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS TCA 72 bp GAGATGGGTAGCCGTCGGTCTGGTCCAGGAGTAAGCTaGCCACCAGGATACAAAGGACAAGTCCGTTCTTTG +
Preference number: 6 (lower is better)
Translates to: EMGSRRSGPGVS*PPGYKGQVRSL
Trigger: CAAAGAACGGACTTGTCCTTTGTATCCTGGTGGTCAGCTTACTCCTGGACCAGACCGACGGCTACCCATCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS TCA 72 bp CTGGCAGACTCCTCTTACCATAGTCTCGAAGGGCATTaGTTTCGTCGGAATTCCTGGGGACAACCAGGGTCC +
Preference number: 6 (lower is better)
Translates to: LADSSYHSLEGH*FRRNSWGQPGS
Trigger: GGACCCTGGTTGTCCCCAGGAATTCCGACGAAATCAATGCCCTTCGAGACTATGGTAAGAGGAGTCTGCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS CCA 72 bp CATCCTTTGCTTTCACGCGGCGTTTGCTGTGTTTCCTaGCTTTCATTCGAGATGGGTAGCCGTCGGTCTGGT +
Preference number: 6 (lower is better)
Translates to: HPLLSRGVCCVS*LSFEMGSRRSG
Trigger: ACCAGACCGACGGCTACCCATCTCGAATGAAAGCCAGGAAACACAGCAAACGCCGCGTGAAAGCAAAGGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS CAA 90 bp CTTCCCGCCACAGCTTTTCAACTTGAGATTTCAGGTCGTCATCCTTaGCTTTCACGCGGCGTTTGCTGTGTTTCCTGGCTTTCATTCGAG +
Preference number: 6 (lower is better)
Translates to: LPATAFQLEISGRHP*LSRGVCCVSWLSFE
Trigger: CTCGAATGAAAGCCAGGAAACACAGCAAACGCCGCGTGAAAGCAAAGGATGACGACCTGAAATCTCAAGTTGAAAAGCTGTGGCGGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS CAA 90 bp TTGCATCTCCTTCAAGGCGTTGACTTCCCGCCACAGCTTTTCAACTaGAGATTTCAGGTCGTCATCCTTTGCTTTCACGCGGCGTTTGCT +
Preference number: 6 (lower is better)
Translates to: LHLLQGVDFPPQLFN*RFQVVILCFHAAFA
Trigger: AGCAAACGCCGCGTGAAAGCAAAGGATGACGACCTGAAATCTCAAGTTGAAAAGCTGTGGCGGGAAGTCAACGCCTTGAAGGAGATGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS TCA 72 bp TTCAAGGCGTTGACTTCCCGCCACAGCTTTTCAACTTaGGATTTCAGGTCGTCATCCTTTGCTTTCACGCGG +
Preference number: 6 (lower is better)
Translates to: FKALTSRHSFST*DFRSSSFAFTR
Trigger: CCGCGTGAAAGCAAAGGATGACGACCTGAAATCTCAAGTTGAAAAGCTGTGGCGGGAAGTCAACGCCTTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS GCA 72 bp ATTTCAGGTCGTCATCCTTTGCTTTCACGCGGCGTTTaGTGTGTTTCCTGGCTTTCATTCGAGATGGGTAGC +
Preference number: 6 (lower is better)
Translates to: ISGRHPLLSRGV*CVSWLSFEMGS
Trigger: GCTACCCATCTCGAATGAAAGCCAGGAAACACAGCAAACGCCGCGTGAAAGCAAAGGATGACGACCTGAAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS CAA 72 bp AGGAAGGAGACAGCGAATCCGTGGACATCGAGGAACTaGCCTTCTGTGACCATGTCATTTATGCCTAGCCAA +
Preference number: 6 (lower is better)
Translates to: RKETANPWTSRN*PSVTMSFMPSQ
Trigger: TTGGCTAGGCATAAATGACATGGTCACAGAAGGCAAGTTCCTCGATGTCCACGGATTCGCTGTCTCCTTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS CAA 90 bp TCCCAGTTGAGGAAGGAGACAGCGAATCCGTGGACATCGAGGAACTaGCCTTCTGTGACCATGTCATTTATGCCTAGCCAAAAGTCATTG +
Preference number: 6 (lower is better)
Translates to: SQLRKETANPWTSRN*PSVTMSFMPSQKSL
Trigger: CAATGACTTTTGGCTAGGCATAAATGACATGGTCACAGAAGGCAAGTTCCTCGATGTCCACGGATTCGCTGTCTCCTTCCTCAACTGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS TCA 72 bp AGACTGTCTGCAGAGCTTGCATCTCCTTCAAGGCGTTaGCTTCCCGCCACAGCTTTTCAACTTGAGATTTCA +
Preference number: 6 (lower is better)
Translates to: RLSAELASPSRR*LPATAFQLEIS
Trigger: TGAAATCTCAAGTTGAAAAGCTGTGGCGGGAAGTCAACGCCTTGAAGGAGATGCAAGCTCTGCAGACAGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS GCA 72 bp CTTCTGAAGCAAGGTAGCACTTCTTATGAACTTTGGTaGCTCGGAGACAGACTGTCTGCAGAGCTTGCATCT +
Preference number: 6 (lower is better)
Translates to: LLKQGSTSYELW*LGDRLSAELAS
Trigger: AGATGCAAGCTCTGCAGACAGTCTGTCTCCGAGGCACCAAAGTTCATAAGAAGTGCTACCTTGCTTCAGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4
CDS GCA 72 bp CAGCTTTTCAACTTGAGATTTCAGGTCGTCATCCTTTaGTTTCACGCGGCGTTTGCTGTGTTTCCTGGCTTT +
Preference number: 6 (lower is better)
Translates to: QLFNLRFQVVIL*FHAAFAVFPGF
Trigger: AAAGCCAGGAAACACAGCAAACGCCGCGTGAAAGCAAAGGATGACGACCTGAAATCTCAAGTTGAAAAGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000009018.4