Pregenerated sensors for CLEC2F (Mus musculus)
Ensembl gene IDs: ENSMUSG00000089728Ensembl transcript IDs: ENSMUST00000204981.2
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS GCA 90 bp | GCTCCTCCTCGTTGTCAAACCGAGCTAGTTGGGCCTCTTGGGCCATaGAGAAGGCCTGGGCAAATGTCCAGTTACTTGTGTATTCAGAAA | + |
Preference number: 5 (lower is better) Translates to: APPRCQTELVGPLGP*RRPGQMSSYLCIQK Trigger: TTTCTGAATACACAAGTAACTGGACATTTGCCCAGGCCTTCTGCATGGCCCAAGAGGCCCAACTAGCTCGGTTTGACAACGAGGAGGAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204981.2 |
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CDS CCA 90 bp | CACCTCCAAGGGTGCTCTGACGAGTCTCTGTGTAGTCCAATCCAGTaGCTAGAATTCATGTGTCTCTTTAGAAAATTCAGCTCCTCCTCG | + |
Preference number: 5 (lower is better) Translates to: HLQGCSDESLCSPIQ*LEFMCLFRKFSSSS Trigger: CGAGGAGGAGCTGAATTTTCTAAAGAGACACATGAATTCTAGCCACTGGATTGGACTACACAGAGACTCGTCAGAGCACCCTTGGAGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204981.2 |
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CDS GCA 90 bp | AAAAACGTGTTGTTATACTCAGTGTTGTCTGTCCACCTCCAAGGGTaGTCTGACGAGTCTCTGTGTAGTCCAATCCAGTGGCTAGAATTC | + |
Preference number: 5 (lower is better) Translates to: KNVLLYSVLSVHLQG*SDESLCSPIQWLEF Trigger: GAATTCTAGCCACTGGATTGGACTACACAGAGACTCGTCAGAGCACCCTTGGAGGTGGACAGACAACACTGAGTATAACAACACGTTTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000204981.2 |
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CDS CCA 72 bp | TCCTCCTCGTTGTCAAACCGAGCTAGTTGGGCCTCTTaGGCCATGCAGAAGGCCTGGGCAAATGTCCAGTTA | + |
Preference number: 6 (lower is better) Translates to: SSSLSNRASWAS*AMQKAWANVQL Trigger: TAACTGGACATTTGCCCAGGCCTTCTGCATGGCCCAAGAGGCCCAACTAGCTCGGTTTGACAACGAGGAGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204981.2 |
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CDS GCA 72 bp | CGTTGTCAAACCGAGCTAGTTGGGCCTCTTGGGCCATaGAGAAGGCCTGGGCAAATGTCCAGTTACTTGTGT | + |
Preference number: 6 (lower is better) Translates to: RCQTELVGPLGP*RRPGQMSSYLC Trigger: ACACAAGTAACTGGACATTTGCCCAGGCCTTCTGCATGGCCCAAGAGGCCCAACTAGCTCGGTTTGACAACG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204981.2 |
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CDS CCA 72 bp | AAATTCAGCTCCTCCTCGTTGTCAAACCGAGCTAGTTaGGCCTCTTGGGCCATGCAGAAGGCCTGGGCAAAT | + |
Preference number: 6 (lower is better) Translates to: KFSSSSLSNRAS*ASWAMQKAWAN Trigger: ATTTGCCCAGGCCTTCTGCATGGCCCAAGAGGCCCAACTAGCTCGGTTTGACAACGAGGAGGAGCTGAATTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204981.2 |
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CDS CAA 90 bp | TGGCTAGAATTCATGTGTCTCTTTAGAAAATTCAGCTCCTCCTCGTaGTCAAACCGAGCTAGTTGGGCCTCTTGGGCCATGCAGAAGGCC | + |
Preference number: 6 (lower is better) Translates to: WLEFMCLFRKFSSSS*SNRASWASWAMQKA Trigger: GGCCTTCTGCATGGCCCAAGAGGCCCAACTAGCTCGGTTTGACAACGAGGAGGAGCTGAATTTTCTAAAGAGACACATGAATTCTAGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204981.2 |
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CDS GCA 72 bp | TTGTTATACTCAGTGTTGTCTGTCCACCTCCAAGGGTaGTCTGACGAGTCTCTGTGTAGTCCAATCCAGTGG | + |
Preference number: 6 (lower is better) Translates to: LLYSVLSVHLQG*SDESLCSPIQW Trigger: CCACTGGATTGGACTACACAGAGACTCGTCAGAGCACCCTTGGAGGTGGACAGACAACACTGAGTATAACAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204981.2 |
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CDS CAA 72 bp | TTCATGTGTCTCTTTAGAAAATTCAGCTCCTCCTCGTaGTCAAACCGAGCTAGTTGGGCCTCTTGGGCCATG | + |
Preference number: 6 (lower is better) Translates to: FMCLFRKFSSSS*SNRASWASWAM Trigger: CATGGCCCAAGAGGCCCAACTAGCTCGGTTTGACAACGAGGAGGAGCTGAATTTTCTAAAGAGACACATGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204981.2 |
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CDS TCA 72 bp | ACCATGGTCACTCCACAGCAGCGGAAACGCCGACAATaGGACTTGGAAGAGACAATTCCACAAAATTTTTCT | + |
Preference number: 6 (lower is better) Translates to: TMVTPQQRKRRQ*DLEETIPQNFS Trigger: AGAAAAATTTTGTGGAATTGTCTCTTCCAAGTCTCATTGTCGGCGTTTCCGCTGCTGTGGAGTGACCATGGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000204981.2 |
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CDS CCA 72 bp | GGGTGCTCTGACGAGTCTCTGTGTAGTCCAATCCAGTaGCTAGAATTCATGTGTCTCTTTAGAAAATTCAGC | + |
Preference number: 6 (lower is better) Translates to: GCSDESLCSPIQ*LEFMCLFRKFS Trigger: GCTGAATTTTCTAAAGAGACACATGAATTCTAGCCACTGGATTGGACTACACAGAGACTCGTCAGAGCACCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204981.2 |
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CDS CCA 72 bp | TCACTCCACAGCAGCGGAAACGCCGACAATGAGACTTaGAAGAGACAATTCCACAAAATTTTTCTTGGATTT | + |
Preference number: 6 (lower is better) Translates to: SLHSSGNADNET*KRQFHKIFLGF Trigger: AAATCCAAGAAAAATTTTGTGGAATTGTCTCTTCCAAGTCTCATTGTCGGCGTTTCCGCTGCTGTGGAGTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000204981.2 |
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CDS TCA 72 bp | CCATTGTCACTCAGGAAGCCACATTCTCCATCTCCTTaGATCAAAAACGTGTTGTTATACTCAGTGTTGTCT | + |
Preference number: 6 (lower is better) Translates to: PLSLRKPHSPSP*IKNVLLYSVLS Trigger: AGACAACACTGAGTATAACAACACGTTTTTGATTCAAGGAGATGGAGAATGTGGCTTCCTGAGTGACAATGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000204981.2 |