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Pregenerated sensors for CLEC2F (Mus musculus)

Ensembl gene IDs: ENSMUSG00000089728

Ensembl transcript IDs: ENSMUST00000204981.2

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp GCTCCTCCTCGTTGTCAAACCGAGCTAGTTGGGCCTCTTGGGCCATaGAGAAGGCCTGGGCAAATGTCCAGTTACTTGTGTATTCAGAAA +
Preference number: 5 (lower is better)
Translates to: APPRCQTELVGPLGP*RRPGQMSSYLCIQK
Trigger: TTTCTGAATACACAAGTAACTGGACATTTGCCCAGGCCTTCTGCATGGCCCAAGAGGCCCAACTAGCTCGGTTTGACAACGAGGAGGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204981.2
CDS CCA 90 bp CACCTCCAAGGGTGCTCTGACGAGTCTCTGTGTAGTCCAATCCAGTaGCTAGAATTCATGTGTCTCTTTAGAAAATTCAGCTCCTCCTCG +
Preference number: 5 (lower is better)
Translates to: HLQGCSDESLCSPIQ*LEFMCLFRKFSSSS
Trigger: CGAGGAGGAGCTGAATTTTCTAAAGAGACACATGAATTCTAGCCACTGGATTGGACTACACAGAGACTCGTCAGAGCACCCTTGGAGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204981.2
CDS GCA 90 bp AAAAACGTGTTGTTATACTCAGTGTTGTCTGTCCACCTCCAAGGGTaGTCTGACGAGTCTCTGTGTAGTCCAATCCAGTGGCTAGAATTC +
Preference number: 5 (lower is better)
Translates to: KNVLLYSVLSVHLQG*SDESLCSPIQWLEF
Trigger: GAATTCTAGCCACTGGATTGGACTACACAGAGACTCGTCAGAGCACCCTTGGAGGTGGACAGACAACACTGAGTATAACAACACGTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000204981.2
CDS CCA 72 bp TCCTCCTCGTTGTCAAACCGAGCTAGTTGGGCCTCTTaGGCCATGCAGAAGGCCTGGGCAAATGTCCAGTTA +
Preference number: 6 (lower is better)
Translates to: SSSLSNRASWAS*AMQKAWANVQL
Trigger: TAACTGGACATTTGCCCAGGCCTTCTGCATGGCCCAAGAGGCCCAACTAGCTCGGTTTGACAACGAGGAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204981.2
CDS GCA 72 bp CGTTGTCAAACCGAGCTAGTTGGGCCTCTTGGGCCATaGAGAAGGCCTGGGCAAATGTCCAGTTACTTGTGT +
Preference number: 6 (lower is better)
Translates to: RCQTELVGPLGP*RRPGQMSSYLC
Trigger: ACACAAGTAACTGGACATTTGCCCAGGCCTTCTGCATGGCCCAAGAGGCCCAACTAGCTCGGTTTGACAACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204981.2
CDS CCA 72 bp AAATTCAGCTCCTCCTCGTTGTCAAACCGAGCTAGTTaGGCCTCTTGGGCCATGCAGAAGGCCTGGGCAAAT +
Preference number: 6 (lower is better)
Translates to: KFSSSSLSNRAS*ASWAMQKAWAN
Trigger: ATTTGCCCAGGCCTTCTGCATGGCCCAAGAGGCCCAACTAGCTCGGTTTGACAACGAGGAGGAGCTGAATTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204981.2
CDS CAA 90 bp TGGCTAGAATTCATGTGTCTCTTTAGAAAATTCAGCTCCTCCTCGTaGTCAAACCGAGCTAGTTGGGCCTCTTGGGCCATGCAGAAGGCC +
Preference number: 6 (lower is better)
Translates to: WLEFMCLFRKFSSSS*SNRASWASWAMQKA
Trigger: GGCCTTCTGCATGGCCCAAGAGGCCCAACTAGCTCGGTTTGACAACGAGGAGGAGCTGAATTTTCTAAAGAGACACATGAATTCTAGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204981.2
CDS GCA 72 bp TTGTTATACTCAGTGTTGTCTGTCCACCTCCAAGGGTaGTCTGACGAGTCTCTGTGTAGTCCAATCCAGTGG +
Preference number: 6 (lower is better)
Translates to: LLYSVLSVHLQG*SDESLCSPIQW
Trigger: CCACTGGATTGGACTACACAGAGACTCGTCAGAGCACCCTTGGAGGTGGACAGACAACACTGAGTATAACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204981.2
CDS CAA 72 bp TTCATGTGTCTCTTTAGAAAATTCAGCTCCTCCTCGTaGTCAAACCGAGCTAGTTGGGCCTCTTGGGCCATG +
Preference number: 6 (lower is better)
Translates to: FMCLFRKFSSSS*SNRASWASWAM
Trigger: CATGGCCCAAGAGGCCCAACTAGCTCGGTTTGACAACGAGGAGGAGCTGAATTTTCTAAAGAGACACATGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204981.2
CDS TCA 72 bp ACCATGGTCACTCCACAGCAGCGGAAACGCCGACAATaGGACTTGGAAGAGACAATTCCACAAAATTTTTCT +
Preference number: 6 (lower is better)
Translates to: TMVTPQQRKRRQ*DLEETIPQNFS
Trigger: AGAAAAATTTTGTGGAATTGTCTCTTCCAAGTCTCATTGTCGGCGTTTCCGCTGCTGTGGAGTGACCATGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204981.2
CDS CCA 72 bp GGGTGCTCTGACGAGTCTCTGTGTAGTCCAATCCAGTaGCTAGAATTCATGTGTCTCTTTAGAAAATTCAGC +
Preference number: 6 (lower is better)
Translates to: GCSDESLCSPIQ*LEFMCLFRKFS
Trigger: GCTGAATTTTCTAAAGAGACACATGAATTCTAGCCACTGGATTGGACTACACAGAGACTCGTCAGAGCACCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204981.2
CDS CCA 72 bp TCACTCCACAGCAGCGGAAACGCCGACAATGAGACTTaGAAGAGACAATTCCACAAAATTTTTCTTGGATTT +
Preference number: 6 (lower is better)
Translates to: SLHSSGNADNET*KRQFHKIFLGF
Trigger: AAATCCAAGAAAAATTTTGTGGAATTGTCTCTTCCAAGTCTCATTGTCGGCGTTTCCGCTGCTGTGGAGTGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204981.2
CDS TCA 72 bp CCATTGTCACTCAGGAAGCCACATTCTCCATCTCCTTaGATCAAAAACGTGTTGTTATACTCAGTGTTGTCT +
Preference number: 6 (lower is better)
Translates to: PLSLRKPHSPSP*IKNVLLYSVLS
Trigger: AGACAACACTGAGTATAACAACACGTTTTTGATTCAAGGAGATGGAGAATGTGGCTTCCTGAGTGACAATGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000204981.2