RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CLEC16A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000068663

Ensembl transcript IDs: ENSMUST00000038145.13, ENSMUST00000066345.15, ENSMUST00000115823.2, ENSMUST00000115824.10, ENSMUST00000115827.8, ENSMUST00000115828.9, ENSMUST00000150894.2, ENSMUST00000155633.8

Found 1016 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCTGGATTGGGAGGTCCAGAAGGGCGGCTATCCTCTGCATCTTCATaGGCCTGGCCTGGATGCGGCCCTTGGCCAGGCGCTGCTTGGCAA +
Preference number: 1 (lower is better)
Translates to: AGLGGPEGRLSSASS*AWPGCGPWPGAAWQ
Trigger: TTGCCAAGCAGCGCCTGGCCAAGGGCCGCATCCAGGCCAGGCGCATGAAGATGCAGAGGATAGCCGCCCTTCTGGACCTCCCAATCCAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR CCA 90 bp AGGTCCAGAAGGGCGGCTATCCTCTGCATCTTCATGCGCCTGGCCTaGATGCGGCCCTTGGCCAGGCGCTGCTTGGCAATAATGCAGCGG +
Preference number: 1 (lower is better)
Translates to: RSRRAAILCIFMRLA*MRPLARRCLAIMQR
Trigger: CCGCTGCATTATTGCCAAGCAGCGCCTGGCCAAGGGCCGCATCCAGGCCAGGCGCATGAAGATGCAGAGGATAGCCGCCCTTCTGGACCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR TCA 90 bp GGTGATGGGTTAGAGGCCAGCTCTGCTAGTCTGCCCTGGGGCAGTTaGAGAAGGGAGGGAGACCAGGGCAGACGTGGCATGCATGGCCTG +
Preference number: 1 (lower is better)
Translates to: GDGLEASSASLPWGS*RREGDQGRRGMHGL
Trigger: CAGGCCATGCATGCCACGTCTGCCCTGGTCTCCCTCCCTTCTTCAACTGCCCCAGGGCAGACTAGCAGAGCTGGCCTCTAACCCATCACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR GCA 90 bp AAGGAGATGGTGGGCTGCTGGGCGGGAAGGAGGCTAGGGGACAGGTaGATTGTCTCCCCCTCAGAGCTCCTGGCCGATGAGTTCTTGCTG +
Preference number: 1 (lower is better)
Translates to: KEMVGCWAGRRLGDR*IVSPSELLADEFLL
Trigger: CAGCAAGAACTCATCGGCCAGGAGCTCTGAGGGGGAGACAATGCACCTGTCCCCTAGCCTCCTTCCCGCCCAGCAGCCCACCATCTCCTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115823.2
ENSMUST00000115828.9
3UTR GCA 90 bp TACCAGCGGGCCGCACACACAAAGGGAGAGCTCTGGCGCACTCAGTaGTCTGTGGGTTCCGCAGGCTCTGGGTTTACAGCACCCTCAGCT +
Preference number: 1 (lower is better)
Translates to: YQRAAHTKGELWRTQ*SVGSAGSGFTAPSA
Trigger: AGCTGAGGGTGCTGTAAACCCAGAGCCTGCGGAACCCACAGAGCACTGAGTGCGCCAGAGCTCTCCCTTTGTGTGTGCGGCCCGCTGGTA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
3UTR GCA 90 bp TTGCTGAGGGTGCAGAGGAAGAGCCTCCTGAGTCACAGTGGCTGGTaGTTCCACTGCCACCAGGGCTCCCACTGGCAAATGGTGGCGACG +
Preference number: 1 (lower is better)
Translates to: LLRVQRKSLLSHSGW*FHCHQGSHWQMVAT
Trigger: CGTCGCCACCATTTGCCAGTGGGAGCCCTGGTGGCAGTGGAAGCACCAGCCACTGTGACTCAGGAGGCTCTTCCTCTGCACCCTCAGCAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR GCA 90 bp GTGCAGAGGAAGAGCCTCCTGAGTCACAGTGGCTGGTGCTTCCACTaGCACCAGGGCTCCCACTGGCAAATGGTGGCGACGGTGATGACA +
Preference number: 1 (lower is better)
Translates to: VQRKSLLSHSGWCFH*HQGSHWQMVATVMT
Trigger: TGTCATCACCGTCGCCACCATTTGCCAGTGGGAGCCCTGGTGGCAGTGGAAGCACCAGCCACTGTGACTCAGGAGGCTCTTCCTCTGCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR CCA 90 bp CTCTGGGTTGCTGAGGGTGCAGAGGAAGAGCCTCCTGAGTCACAGTaGCTGGTGCTTCCACTGCCACCAGGGCTCCCACTGGCAAATGGT +
Preference number: 1 (lower is better)
Translates to: LWVAEGAEEEPPESQ*LVLPLPPGLPLANG
Trigger: ACCATTTGCCAGTGGGAGCCCTGGTGGCAGTGGAAGCACCAGCCACTGTGACTCAGGAGGCTCTTCCTCTGCACCCTCAGCAACCCAGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR TCA 90 bp CGTGGCATGCATGGCCTGGGAGATGGGAGCAATGATTTTGGAGGCTaGCTCTGGGACCTCCAGGTCAGGAGCTGTGGGACCTACTGGACC +
Preference number: 1 (lower is better)
Translates to: RGMHGLGDGSNDFGG*LWDLQVRSCGTYWT
Trigger: GGTCCAGTAGGTCCCACAGCTCCTGACCTGGAGGTCCCAGAGTCAGCCTCCAAAATCATTGCTCCCATCTCCCAGGCCATGCATGCCACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR TCA 90 bp AGACCAGGGCAGACGTGGCATGCATGGCCTGGGAGATGGGAGCAATaGTTTTGGAGGCTGACTCTGGGACCTCCAGGTCAGGAGCTGTGG +
Preference number: 1 (lower is better)
Translates to: RPGQTWHAWPGRWEQ*FWRLTLGPPGQELW
Trigger: CCACAGCTCCTGACCTGGAGGTCCCAGAGTCAGCCTCCAAAATCATTGCTCCCATCTCCCAGGCCATGCATGCCACGTCTGCCCTGGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CCA 90 bp CCATTCCTCCCCTCAGGTTCAGTCCCCACAAAGCATGAGTCCTGCTaGCAGAAGCAGGCACTTCCCTGGCCAGACCTTCCCAGTTCTGCC +
Preference number: 1 (lower is better)
Translates to: PFLPSGSVPTKHESC*QKQALPWPDLPSSA
Trigger: GGCAGAACTGGGAAGGTCTGGCCAGGGAAGTGCCTGCTTCTGCCAGCAGGACTCATGCTTTGTGGGGACTGAACCTGAGGGGAGGAATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CCA 90 bp CTGAGTCACAGTGGCTGGTGCTTCCACTGCCACCAGGGCTCCCACTaGCAAATGGTGGCGACGGTGATGACAGGGATGGAGAGCTATGCT +
Preference number: 1 (lower is better)
Translates to: LSHSGWCFHCHQGSH*QMVATVMTGMESYA
Trigger: AGCATAGCTCTCCATCCCTGTCATCACCGTCGCCACCATTTGCCAGTGGGAGCCCTGGTGGCAGTGGAAGCACCAGCCACTGTGACTCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR TCA 90 bp TGCAGGATAGGGAAGGGCTTAGAGTGCGGGCTGGAGGCAGGCTTGTaGATGGTGATGTTCAGGGCACGGCTGTCATCCTCCACTCCTGTC +
Preference number: 1 (lower is better)
Translates to: CRIGKGLECGLEAGL*MVMFRARLSSSTPV
Trigger: GACAGGAGTGGAGGATGACAGCCGTGCCCTGAACATCACCATTCACAAGCCTGCCTCCAGCCCGCACTCTAAGCCCTTCCCTATCCTGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR GCA 90 bp CCTGGGGCAGTTGAAGAAGGGAGGGAGACCAGGGCAGACGTGGCATaGATGGCCTGGGAGATGGGAGCAATGATTTTGGAGGCTGACTCT +
Preference number: 1 (lower is better)
Translates to: PGAVEEGRETRADVA*MAWEMGAMILEADS
Trigger: AGAGTCAGCCTCCAAAATCATTGCTCCCATCTCCCAGGCCATGCATGCCACGTCTGCCCTGGTCTCCCTCCCTTCTTCAACTGCCCCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR TCA 90 bp GCCTGGAGTAGTGACCTGGCTGGCCAGTTCAGAGGAGGGAGGGGCTaGTGGCACAGATCTGTTCCTTGCTGGCACATGCCTACAACTATG +
Preference number: 1 (lower is better)
Translates to: AWSSDLAGQFRGGRG*WHRSVPCWHMPTTM
Trigger: CATAGTTGTAGGCATGTGCCAGCAAGGAACAGATCTGTGCCATCAGCCCCTCCCTCCTCTGAACTGGCCAGCCAGGTCACTACTCCAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR TCA 90 bp ATGCGGCCCTTGGCCAGGCGCTGCTTGGCAATAATGCAGCGGATATaGTCCGAGAACACGAAGGTGGCCTGCAGGATAGGGAAGGGCTTA +
Preference number: 1 (lower is better)
Translates to: MRPLARRCLAIMQRI*SENTKVACRIGKGL
Trigger: TAAGCCCTTCCCTATCCTGCAGGCCACCTTCGTGTTCTCGGATCATATCCGCTGCATTATTGCCAAGCAGCGCCTGGCCAAGGGCCGCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR GCA 90 bp GCGCTCACCACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTaGCTAAGACTTCAACAGGGAGGAGGCAGCACTGCATGTTGCCAT +
Preference number: 1 (lower is better)
Translates to: ALTTTLSLTCGKCPT*LRLQQGGGSTACCH
Trigger: ATGGCAACATGCAGTGCTGCCTCCTCCCTGTTGAAGTCTTAGGCAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGTGGTGAGCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR GCA 90 bp CTTCCATTCCTCCCCTCAGGTTCAGTCCCCACAAAGCATGAGTCCTaGTGGCAGAAGCAGGCACTTCCCTGGCCAGACCTTCCCAGTTCT +
Preference number: 1 (lower is better)
Translates to: LPFLPSGSVPTKHES*WQKQALPWPDLPSS
Trigger: AGAACTGGGAAGGTCTGGCCAGGGAAGTGCCTGCTTCTGCCAGCAGGACTCATGCTTTGTGGGGACTGAACCTGAGGGGAGGAATGGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR GCA 90 bp TGTCTACGGATGCAAACACAGAGCGTTGCACTGTCGGGTCACTGCTaGCTCTGCGGCACTGCTCATAGAAACGGAAAGGCAGGTGCTGGG +
Preference number: 1 (lower is better)
Translates to: CLRMQTQSVALSGHC*LCGTAHRNGKAGAG
Trigger: CCCAGCACCTGCCTTTCCGTTTCTATGAGCAGTGCCGCAGAGGCAGCAGTGACCCGACAGTGCAACGCTCTGTGTTTGCATCCGTAGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR CCA 90 bp GAGAATTGTGGGTGCTCCCAGTGTGTCTTGCTGTCACAAAATGCATaGGGGGTCCCTACCAGCGGGCCGCACACACAAAGGGAGAGCTCT +
Preference number: 1 (lower is better)
Translates to: ENCGCSQCVLLSQNA*GVPTSGPHTQRESS
Trigger: AGAGCTCTCCCTTTGTGTGTGCGGCCCGCTGGTAGGGACCCCCCATGCATTTTGTGACAGCAAGACACACTGGGAGCACCCACAATTCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR GCA 90 bp AGAGAGTCATTCATTCCCCCACCCGCCCCAGCCGGTGGCACCTTCTaGATATGGATACACTTAGACCATGTCGAAGCAGGAAGGAGGCTG +
Preference number: 1 (lower is better)
Translates to: RESFIPPPAPAGGTF*IWIHLDHVEAGRRL
Trigger: CAGCCTCCTTCCTGCTTCGACATGGTCTAAGTGTATCCATATGCAGAAGGTGCCACCGGCTGGGGCGGGTGGGGGAATGAATGACTCTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
3UTR GCA 90 bp CACCTAGGTGAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTaGTTCCTCCAGGACCCCATCCCTCCATCAGCAATGGGCCACAGT +
Preference number: 1 (lower is better)
Translates to: HLGETVSFFRVLRSC*FLQDPIPPSAMGHS
Trigger: ACTGTGGCCCATTGCTGATGGAGGGATGGGGTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTCACCTAGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR GCA 90 bp CCTTGTCTACGGATGCAAACACAGAGCGTTGCACTGTCGGGTCACTaGTGCCTCTGCGGCACTGCTCATAGAAACGGAAAGGCAGGTGCT +
Preference number: 1 (lower is better)
Translates to: PCLRMQTQSVALSGH*CLCGTAHRNGKAGA
Trigger: AGCACCTGCCTTTCCGTTTCTATGAGCAGTGCCGCAGAGGCAGCAGTGACCCGACAGTGCAACGCTCTGTGTTTGCATCCGTAGACAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR GCA 90 bp CCACTGGCAAATGGTGGCGACGGTGATGACAGGGATGGAGAGCTATaGTGGTTTATGCACTGGGCCACAGCAAAGCCTGGCACCTTGTCT +
Preference number: 1 (lower is better)
Translates to: PLANGGDGDDRDGEL*WFMHWATAKPGTLS
Trigger: AGACAAGGTGCCAGGCTTTGCTGTGGCCCAGTGCATAAACCAGCATAGCTCTCCATCCCTGTCATCACCGTCGCCACCATTTGCCAGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR CCA 90 bp TCATTCATTCCCCCACCCGCCCCAGCCGGTGGCACCTTCTGCATATaGATACACTTAGACCATGTCGAAGCAGGAAGGAGGCTGCTCTTC +
Preference number: 1 (lower is better)
Translates to: SFIPPPAPAGGTFCI*IHLDHVEAGRRLLF
Trigger: GAAGAGCAGCCTCCTTCCTGCTTCGACATGGTCTAAGTGTATCCATATGCAGAAGGTGCCACCGGCTGGGGCGGGTGGGGGAATGAATGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
3UTR CCA 90 bp CCACAGGTTTCTACCCAGAGTAACCTTGTCCACTTCTGTGCACACTaGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGG +
Preference number: 1 (lower is better)
Translates to: PQVSTQSNLVHFCAH*EGRQRSCPKDGASG
Trigger: CCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGTGCACAGAAGTGGACAAGGTTACTCTGGGTAGAAACCTGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CCA 90 bp CTGGCAAATGGTGGCGACGGTGATGACAGGGATGGAGAGCTATGCTaGTTTATGCACTGGGCCACAGCAAAGCCTGGCACCTTGTCTACG +
Preference number: 1 (lower is better)
Translates to: LANGGDGDDRDGELC*FMHWATAKPGTLST
Trigger: CGTAGACAAGGTGCCAGGCTTTGCTGTGGCCCAGTGCATAAACCAGCATAGCTCTCCATCCCTGTCATCACCGTCGCCACCATTTGCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR TCA 90 bp GCCGTTTCTAGGATCCCAGCCTGCTCAGCGAGAGGTCAGAGCAAATaGGTGCTTGGTGGTTGTCTTGTAGGGAGAGGTATGAGGGGCAGT +
Preference number: 1 (lower is better)
Translates to: AVSRIPACSARGQSK*VLGGCLVGRGMRGS
Trigger: ACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTGCTCTGACCTCTCGCTGAGCAGGCTGGGATCCTAGAAACGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR TCA 90 bp CAGGTCACGCGAGAGCAGAGGCTTGGCCTTCTCACCCATGTGACCTaGGCGGACTCAGGTCTCTCTCATCTTGTTCAGAAGTACCTCAGT +
Preference number: 1 (lower is better)
Translates to: QVTREQRLGLLTHVT*ADSGLSHLVQKYLS
Trigger: ACTGAGGTACTTCTGAACAAGATGAGAGAGACCTGAGTCCGCTCAGGTCACATGGGTGAGAAGGCCAAGCCTCTGCTCTCGCGTGACCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR TCA 90 bp TCATCCAGGTCACGCGAGAGCAGAGGCTTGGCCTTCTCACCCATGTaGCCTGAGCGGACTCAGGTCTCTCTCATCTTGTTCAGAAGTACC +
Preference number: 1 (lower is better)
Translates to: SSRSRESRGLAFSPM*PERTQVSLILFRST
Trigger: GGTACTTCTGAACAAGATGAGAGAGACCTGAGTCCGCTCAGGTCACATGGGTGAGAAGGCCAAGCCTCTGCTCTCGCGTGACCTGGATGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR GCA 90 bp ATGGTGGCGACGGTGATGACAGGGATGGAGAGCTATGCTGGTTTATaGACTGGGCCACAGCAAAGCCTGGCACCTTGTCTACGGATGCAA +
Preference number: 1 (lower is better)
Translates to: MVATVMTGMESYAGL*TGPQQSLAPCLRMQ
Trigger: TTGCATCCGTAGACAAGGTGCCAGGCTTTGCTGTGGCCCAGTGCATAAACCAGCATAGCTCTCCATCCCTGTCATCACCGTCGCCACCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR CCA 90 bp GATCCCAGCCTGCTCAGCGAGAGGTCAGAGCAAATGAGTGCTTGGTaGTTGTCTTGTAGGGAGAGGTATGAGGGGCAGTTTTCAGGGCCA +
Preference number: 1 (lower is better)
Translates to: DPSLLSERSEQMSAW*LSCRERYEGQFSGP
Trigger: TGGCCCTGAAAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTGCTCTGACCTCTCGCTGAGCAGGCTGGGATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR TCA 90 bp CCCCCTCAGAGCTCCTGGCCGATGAGTTCTTGCTGGGCTTGGAGTTaGCATCCATTTCATTCCCAATCACTGACTGGTCTAGGTGAGGCT +
Preference number: 1 (lower is better)
Translates to: PPQSSWPMSSCWAWS*HPFHSQSLTGLGEA
Trigger: AGCCTCACCTAGACCAGTCAGTGATTGGGAATGAAATGGATGTCAACTCCAAGCCCAGCAAGAACTCATCGGCCAGGAGCTCTGAGGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115823.2
ENSMUST00000115828.9
3UTR CCA 90 bp AATCAAGAGAAGAGAGTCATTCATTCCCCCACCCGCCCCAGCCGGTaGCACCTTCTGCATATGGATACACTTAGACCATGTCGAAGCAGG +
Preference number: 1 (lower is better)
Translates to: NQEKRVIHSPTRPSR*HLLHMDTLRPCRSR
Trigger: CCTGCTTCGACATGGTCTAAGTGTATCCATATGCAGAAGGTGCCACCGGCTGGGGCGGGTGGGGGAATGAATGACTCTCTTCTCTTGATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
3UTR GCA 90 bp CTGAATCTCTCTTTTAGGGAAGGGCAGGAGGACTGGATACATTGTTaGAGAAGAGGGAAGAAGCCGAAGGCCTGTGGGTACTGGGACTTC +
Preference number: 1 (lower is better)
Translates to: LNLSFREGQEDWIHC*RRGKKPKACGYWDF
Trigger: GAAGTCCCAGTACCCACAGGCCTTCGGCTTCTTCCCTCTTCTGCAACAATGTATCCAGTCCTCCTGCCCTTCCCTAAAAGAGAGATTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
3UTR GCA 90 bp GACCCAGTAGGTTCTTGCTGGTTAGGTCTGTCTGGAGAGCACAGTTaGCAAGTTAGCAGAGTACTCCTGAAGACTGGGTTGTACCCAATG +
Preference number: 1 (lower is better)
Translates to: DPVGSCWLGLSGEHS*QVSRVLLKTGLYPM
Trigger: CATTGGGTACAACCCAGTCTTCAGGAGTACTCTGCTAACTTGGCAACTGTGCTCTCCAGACAGACCTAACCAGCAAGAACCTACTGGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR TCA 90 bp CTGCTCTTCTTAAGAAGCAGCTCTCTCAGCCCCTGGACTTTCCACTaGATCTCTCTTTTAGGGAAGGGCAGGAGGACTGGATACATTGTT +
Preference number: 1 (lower is better)
Translates to: LLFLRSSSLSPWTFH*ISLLGKGRRTGYIV
Trigger: AACAATGTATCCAGTCCTCCTGCCCTTCCCTAAAAGAGAGATTCAGTGGAAAGTCCAGGGGCTGAGAGAGCTGCTTCTTAAGAAGAGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
3UTR TCA 90 bp ACTTTGCCAGGGCCTTTGGAGTGGCTGCCTCTAAGGAAGATTGGTTaGCTTCCTGACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTT +
Preference number: 1 (lower is better)
Translates to: TLPGPLEWLPLRKIG*LPDPAFCFRKHLVF
Trigger: AAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGTCAGGAAGTCAACCAATCTTCCTTAGAGGCAGCCACTCCAAAGGCCCTGGCAAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR GCA 90 bp GAACACCATGGGCACAATCTTTTCCCTTCCTTAAAATTTCCGGATTaGAAAGAGGAGGCTAGTCACAGAAGGATAGGGCTGACCTGTTTA +
Preference number: 1 (lower is better)
Translates to: EHHGHNLFPSLKFPD*KEEASHRRIGLTCL
Trigger: TAAACAGGTCAGCCCTATCCTTCTGTGACTAGCCTCCTCTTTGCAATCCGGAAATTTTAAGGAAGGGAAAAGATTGTGCCCATGGTGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR GCA 90 bp CACTTGCATCTTGGGAAGCAGATTATATCTGAGGATGACTTTCTGTaGCTTAAATCCTTTGATTTCTGTCACGGACACTGGCTAATGGGT +
Preference number: 1 (lower is better)
Translates to: HLHLGKQIISEDDFL*LKSFDFCHGHWLMG
Trigger: ACCCATTAGCCAGTGTCCGTGACAGAAATCAAAGGATTTAAGGCACAGAAAGTCATCCTCAGATATAATCTGCTTCCCAAGATGCAAGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR TCA 90 bp TTCAGCTCTGAGGGAGGGAAGGAGCATTTAACCTTCTGCCCATTGTaGCTGTGTGAAATATATTTATTGCATCTACAAAAGATCAGACTT +
Preference number: 1 (lower is better)
Translates to: FSSEGGKEHLTFCPL*LCEIYLLHLQKIRL
Trigger: AAGTCTGATCTTTTGTAGATGCAATAAATATATTTCACACAGTCACAATGGGCAGAAGGTTAAATGCTCCTTCCCTCCCTCAGAGCTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR GCA 90 bp ACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATCAGGGGCAGGGCCCCTGGGGAGCTGGGAGATaGCAGAGAGGGCTCGGAGGC +
Preference number: 2 (lower is better)
Translates to: TVPVGPAPCGCQDQGQGPWGAGR*QRGLGG
Trigger: GCCTCCGAGCCCTCTCTGGCATCTCCCAGCTCCCCA...GGGGCCCTGCCCCTGATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
3UTR-3UTR GCA 90 bp GGCTGGTGCTTCCACTGCCACCAGGGCTCCCACTGGCAAATGGTGGCGACGGTGTGCGCCTGGCCTGGATaGGGCCCTTGGCCAGGCGCT +
Preference number: 2 (lower is better)
Translates to: GWCFHCHQGSHWQMVATVCAWPG*GPWPGA
Trigger: AGCGCCTGGCCAAGGGCCGCATCCAGGCCAGGCGCA...CACCGTCGCCACCATTTGCCAGTGGGAGCCCTGGTGGCAGTGGAAGCACCAGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR TCA 90 bp AGGGCCCCAGACCCCTCTGAGGTGGCCAATGCCATCGTCTCTACACAGGAGGCCGGCCCCAGACCCCTCTaGGGTGGCCAATGCCATCGT +
Preference number: 2 (lower is better)
Translates to: RAPDPSEVANAIVSTQEAGPRPL*GGQCHR
Trigger: ACGATGGCATTGGCCACCTCAGAGGGGTCTGGGGCC...GGCCTCCTGTGTAGAGACGATGGCATTGGCCACCTCAGAGGGGTCTGGGGCCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR GCA 90 bp AAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGTGGGGTCTCCGTATCTaGTGCAGGCAGTGTGGGGAG +
Preference number: 2 (lower is better)
Translates to: KELPKGRCQWVLPPAAVRWGLRI*CRQCGE
Trigger: CTCCCCACACTGCCTGCAGCAGATACGGAGACCCCA...CCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
3UTR-3UTR TCA 90 bp GGTGGGCTGCTGGGCGGGAAGGAGGCTAGGGGACAGGTGCATTGTCTCCCCCTCAGAGCTCCTGGCCGATaGGTTCTTGCTGGGCTTGGA +
Preference number: 2 (lower is better)
Translates to: GGLLGGKEARGQVHCLPLRAPGR*VLAGLG
Trigger: TCCAAGCCCAGCAAGAACTCATCGGCCAGGAGCTCT...GAGGGGGAGACAATGCACCTGTCCCCTAGCCTCCTTCCCGCCCAGCAGCCCACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115823.2
ENSMUST00000115828.9
3UTR-3UTR CCA 90 bp GTGGCTGGTGCTTCCACTGCCACCAGGGCTCCCACTGGCAAATGGTGGCGACGGAGAGCAAGGAGATGGTaGGCTGCTGGGCGGGAAGGA +
Preference number: 2 (lower is better)
Translates to: VAGASTATRAPTGKWWRRRARRW*AAGREG
Trigger: TCCTTCCCGCCCAGCAGCCCACCATCTCCTTGCTCT...CCGTCGCCACCATTTGCCAGTGGGAGCCCTGGTGGCAGTGGAAGCACCAGCCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR CCA 90 bp TTCCACTGCCACCAGGGCTCCCACTGGCAAATGGTGGCGACGGTGATGACAGGGCCTGGATGCGGCCCTTaGCCAGGCGCTGCTTGGCAA +
Preference number: 2 (lower is better)
Translates to: FHCHQGSHWQMVATVMTGPGCGP*PGAAWQ
Trigger: TTGCCAAGCAGCGCCTGGCCAAGGGCCGCATCCAGG...CCCTGTCATCACCGTCGCCACCATTTGCCAGTGGGAGCCCTGGTGGCAGTGGAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR TCA 90 bp GATGGTGGGCTGCTGGGCGGGAAGGAGGCTAGGGGACAGGTGCATTGTCTCCCCAGAGCTCCTGGCCGATaGGTTCTTGCTGGGCTTGGA +
Preference number: 2 (lower is better)
Translates to: DGGLLGGKEARGQVHCLPRAPGR*VLAGLG
Trigger: TCCAAGCCCAGCAAGAACTCATCGGCCAGGAGCTCT...GGGGAGACAATGCACCTGTCCCCTAGCCTCCTTCCCGCCCAGCAGCCCACCATC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115823.2
ENSMUST00000115828.9
3UTR-3UTR GCA 90 bp CTACACAGGAGGCCGTTTCTAGGATCCCAGCCTGCTCAGCGAGAGGTCAGAGCAGGTGCCAGTGGGTCCTaGCCCCTGCGGCTGTCAGGA +
Preference number: 2 (lower is better)
Translates to: LHRRPFLGSQPAQREVRAGASGS*PLRLSG
Trigger: TCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACC...TGCTCTGACCTCTCGCTGAGCAGGCTGGGATCCTAGAAACGGCCTCCTGTGTAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR GCA 90 bp AGCACCCTCAGCTGGGGTCTCCGTATCTGCTGCAGGCAGTGTGGGGAGCTGGGAAAGGAGATGGTGGGCTaGTGGGCGGGAAGGAGGCTA +
Preference number: 2 (lower is better)
Translates to: STLSWGLRICCRQCGELGKEMVG*WAGRRL
Trigger: TAGCCTCCTTCCCGCCCAGCAGCCCACCATCTCCTT...TCCCAGCTCCCCACACTGCCTGCAGCAGATACGGAGACCCCAGCTGAGGGTGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
3UTR-3UTR CCA 90 bp GTGGCTGGTGCTTCCACTGCCACCAGGGCTCCCACTGGCAAATGGTGGCGACGGCTCCCCAGCCAAGTCTaGATACGTCAGGCTCCACCA +
Preference number: 2 (lower is better)
Translates to: VAGASTATRAPTGKWWRRLPSQV*IRQAPP
Trigger: TGGTGGAGCCTGACGTATCCAGACTTGGCTGGGGAG...CCGTCGCCACCATTTGCCAGTGGGAGCCCTGGTGGCAGTGGAAGCACCAGCCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR TCA 90 bp ACTCAGTGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCCGGGCTCTGGGTTGCTaGGGGTGCAGAGGAAGAGCC +
Preference number: 2 (lower is better)
Translates to: TQCVSSVLVEQGDGGLLGRALGC*GCRGRA
Trigger: GGCTCTTCCTCTGCACCCTCAGCAACCCAGAGCCCG...GCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACACTGAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR GCA 90 bp CTGGTGCTTCCACTGCCACCAGGGCTCCCACTGGCAAATGGTGGCGACGGTGATAAGGAGATGGTGGGCTaGTGGGCGGGAAGGAGGCTA +
Preference number: 2 (lower is better)
Translates to: LVLPLPPGLPLANGGDGDKEMVG*WAGRRL
Trigger: TAGCCTCCTTCCCGCCCAGCAGCCCACCATCTCCTT...ATCACCGTCGCCACCATTTGCCAGTGGGAGCCCTGGTGGCAGTGGAAGCACCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR CCA 90 bp AAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGCACTTCTGTGCACACTaGGAGGGAAGACAAAGGAGC +
Preference number: 2 (lower is better)
Translates to: KELPKGRCQWVLPPAAVRHFCAH*EGRQRS
Trigger: GCTCCTTTGTCTTCCCTCCCAGTGTGCACAGAAGTG...CCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp ACAAAGGGAGAGCTCTGGCGCACTCAGTGCTCTGTGGGTTCCGCAGGCTCTGGGAGAGCAAGGAGATGGTaGGCTGCTGGGCGGGAAGGA +
Preference number: 2 (lower is better)
Translates to: TKGELWRTQCSVGSAGSGRARRW*AAGREG
Trigger: TCCTTCCCGCCCAGCAGCCCACCATCTCCTTGCTCT...CCCAGAGCCTGCGGAACCCACAGAGCACTGAGTGCGCCAGAGCTCTCCCTTTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
3UTR-3UTR CCA 90 bp TGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCGGGAAGGCATCTTCATGCGCCTaGCCTGGATGCGGCCCTTGG +
Preference number: 2 (lower is better)
Translates to: CVSSVLVEQGDGGLLGGKASSCA*PGCGPW
Trigger: CCAAGGGCCGCATCCAGGCCAGGCGCATGAAGATGC...CTTCCCGCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR CCA 90 bp GGCTGGTGCTTCCACTGCCACCAGGGCTCCCACTGGCAAATGGTGGCGACGGTGTGCTGGTTTATGCACTaGGCCACAGCAAAGCCTGGC +
Preference number: 2 (lower is better)
Translates to: GWCFHCHQGSHWQMVATVCWFMH*ATAKPG
Trigger: GCCAGGCTTTGCTGTGGCCCAGTGCATAAACCAGCA...CACCGTCGCCACCATTTGCCAGTGGGAGCCCTGGTGGCAGTGGAAGCACCAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR TCA 90 bp CAGTGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCGGGGAAGGCCAGCAAACTTaGCCACTCCCCAGCCAAGTC +
Preference number: 2 (lower is better)
Translates to: QCVSSVLVEQGDGGLLGGEGQQT*PLPSQV
Trigger: GACTTGGCTGGGGAGTGGTCAAGTTTGCTGGCCTTC...CCCGCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR GCA 90 bp TGTAGGGAGAGGTATGAGGGGCAGTTTTCAGGGCCACGGAGAATTGTGGGTGCTGGTGCCAGTGGGTCCTaGCCCCTGCGGCTGTCAGGA +
Preference number: 2 (lower is better)
Translates to: CRERYEGQFSGPRRIVGAGASGS*PLRLSG
Trigger: TCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACC...AGCACCCACAATTCTCCGTGGCCCTGAAAACTGCCCCTCATACCTCTCCCTACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR GCA 90 bp AGGGCCCCAGACCCCTCTGAGGTGGCCAATGCCATCGTCTCTACACAGGAGGCCGGAAGACAAAGGAGCTaGCCAAAGGACGGTGCCAGT +
Preference number: 2 (lower is better)
Translates to: RAPDPSEVANAIVSTQEAGRQRS*PKDGAS
Trigger: ACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCC...GGCCTCCTGTGTAGAGACGATGGCATTGGCCACCTCAGAGGGGTCTGGGGCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR GCA 90 bp TGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCGGGAAGGGTCTCCGTATCTGCTaGAGGCAGTGTGGGGAGCTG +
Preference number: 2 (lower is better)
Translates to: CVSSVLVEQGDGGLLGGKGLRIC*RQCGEL
Trigger: CAGCTCCCCACACTGCCTGCAGCAGATACGGAGACC...CTTCCCGCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
3UTR-3UTR GCA 90 bp CTACACAGGAGGCCGTTTCTAGGATCCCAGCCTGCTCAGCGAGAGGTCAGAGCACTCTGGCGCACTCAGTaGTCTGTGGGTTCCGCAGGC +
Preference number: 2 (lower is better)
Translates to: LHRRPFLGSQPAQREVRALWRTQ*SVGSAG
Trigger: GCCTGCGGAACCCACAGAGCACTGAGTGCGCCAGAG...TGCTCTGACCTCTCGCTGAGCAGGCTGGGATCCTAGAAACGGCCTCCTGTGTAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
3UTR-3UTR CCA 90 bp TGCACGTCAGAGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCCCTCGCCACGGAGCCTaGAGTAGTGACCTGGCTGGC +
Preference number: 2 (lower is better)
Translates to: CTSEATEKANAILRMQPAPRHGA*SSDLAG
Trigger: GCCAGCCAGGTCACTACTCCAGGCTCCGTGGCGAGG...GGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCTCTGACGTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CAA 90 bp AGGGCAGACGTGGCATGCATGGCCTGGGAGATGGGAGCAATGATTTaGGAGGCTGACTCTGGGACCTCCAGGTCAGGAGCTGTGGGACCT +
Preference number: 2 (lower is better)
Translates to: RADVACMAWEMGAMI*EADSGTSRSGAVGP
Trigger: AGGTCCCACAGCTCCTGACCTGGAGGTCCCAGAGTCAGCCTCCAAAATCATTGCTCCCATCTCCCAGGCCATGCATGCCACGTCTGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR TCA 90 bp CACAGAGCTCTTGTTCCCAGTGGCCATCACTTTCCTCTCTTCCCAGGGGCTAAGGGCCCCAGACCCCTCTaGGGTGGCCAATGCCATCGT +
Preference number: 2 (lower is better)
Translates to: HRALVPSGHHFPLFPGAKGPRPL*GGQCHR
Trigger: ACGATGGCATTGGCCACCTCAGAGGGGTCTGGGGCC...CTTAGCCCCTGGGAAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR GCA 90 bp ATAGAGGGCGCTCACCACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGAGGGCAGACGTGGCATaGATGGCCTGGGAGATGGGA +
Preference number: 2 (lower is better)
Translates to: IEGAHHHTESDLWEVSHLRADVA*MAWEMG
Trigger: TCCCATCTCCCAGGCCATGCATGCCACGTCTGCCCT...CAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGTGGTGAGCGCCCTCTAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR GCA 90 bp GTCACTGCTGCCTCTGCGGCACTGCTCATAGAAACGGAAAGGCAGGTGCTGGGACCCTTGGCCAGGCGCTaGTTGGCAATAATGCAGCGG +
Preference number: 2 (lower is better)
Translates to: VTAASAALLIETERQVLGPLARR*LAIMQR
Trigger: CCGCTGCATTATTGCCAAGCAGCGCCTGGCCAAGGG...TCCCAGCACCTGCCTTTCCGTTTCTATGAGCAGTGCCGCAGAGGCAGCAGTGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR CCA 90 bp GGTGAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACCCTCGCCACGGAGCCTaGAGTAGTGACCTGGCTGGC +
Preference number: 2 (lower is better)
Translates to: GETVSFFRVLRSCCFLQDPRHGA*SSDLAG
Trigger: GCCAGCCAGGTCACTACTCCAGGCTCCGTGGCGAGG...GTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp ACTCAGTGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCAGGCTGAGGCTGTTCTaGAGTCGTGGGGGCATCTGC +
Preference number: 2 (lower is better)
Translates to: TQCVSSVLVEQGDGGLLGRLRLF*SRGGIC
Trigger: GCAGATGCCCCCACGACTCCAGAACAGCCTCAGCCT...GCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACACTGAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR GCA 90 bp ACAAAGGGAGAGCTCTGGCGCACTCAGTGCTCTGTGGGTTCCGCAGGCTCTGGGACGGAGAATTGTGGGTaGTCCCAGTGTGTCTTGCTG +
Preference number: 2 (lower is better)
Translates to: TKGELWRTQCSVGSAGSGTENCG*SQCVLL
Trigger: CAGCAAGACACACTGGGAGCACCCACAATTCTCCGT...CCCAGAGCCTGCGGAACCCACAGAGCACTGAGTGCGCCAGAGCTCTCCCTTTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
3UTR-3UTR GCA 90 bp TGGCTGGTGCTTCCACTGCCACCAGGGCTCCCACTGGCAAATGGTGGCGACGGTAGCTATGCTGGTTTATaGACTGGGCCACAGCAAAGC +
Preference number: 2 (lower is better)
Translates to: WLVLPLPPGLPLANGGDGSYAGL*TGPQQS
Trigger: GCTTTGCTGTGGCCCAGTGCATAAACCAGCATAGCT...ACCGTCGCCACCATTTGCCAGTGGGAGCCCTGGTGGCAGTGGAAGCACCAGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR CCA 90 bp CTACACAGGAGGCCGTTTCTAGGATCCCAGCCTGCTCAGCGAGAGGTCAGAGCACTGTCACAAAATGCATaGGGGGTCCCTACCAGCGGG +
Preference number: 2 (lower is better)
Translates to: LHRRPFLGSQPAQREVRALSQNA*GVPTSG
Trigger: CCCGCTGGTAGGGACCCCCCATGCATTTTGTGACAG...TGCTCTGACCTCTCGCTGAGCAGGCTGGGATCCTAGAAACGGCCTCCTGTGTAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp ACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGGGCCACGGAGAATTGTaGGTGCTCCCAGTGTGTCTT +
Preference number: 2 (lower is better)
Translates to: TLGGKTKELPKGRCQWVLGHGEL*VLPVCL
Trigger: AAGACACACTGGGAGCACCCACAATTCTCCGTGGCC...CAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp ACAAAGGGAGAGCTCTGGCGCACTCAGTGCTCTGTGGGTTCCGCAGGCTCTGGGCACTTCTGTGCACACTaGGAGGGAAGACAAAGGAGC +
Preference number: 2 (lower is better)
Translates to: TKGELWRTQCSVGSAGSGHFCAH*EGRQRS
Trigger: GCTCCTTTGTCTTCCCTCCCAGTGTGCACAGAAGTG...CCCAGAGCCTGCGGAACCCACAGAGCACTGAGTGCGCCAGAGCTCTCCCTTTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
3UTR-3UTR CCA 90 bp ATAGAGGGCGCTCACCACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGCAGACGTGGCATGCATaGCCTGGGAGATGGGAGCAA +
Preference number: 2 (lower is better)
Translates to: IEGAHHHTESDLWEVSHLQTWHA*PGRWEQ
Trigger: TTGCTCCCATCTCCCAGGCCATGCATGCCACGTCTG...CAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGTGGTGAGCGCCCTCTAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp GCAGGTGCTGGGAGGAGGAGGAGGAGGAGCAGAGTCCAAATCCCAGGACTTCTGACAGCCAGGAACCGCTaGACCATACCACCATCCTTG +
Preference number: 2 (lower is better)
Translates to: AGAGRRRRRSRVQIPGLLTARNR*TIPPSL
Trigger: CAAGGATGGTGGTATGGTCCAGCGGTTCCTGGCTGT...CAGAAGTCCTGGGATTTGGACTCTGCTCCTCCTCCTCCTCCTCCCAGCACCTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR CAA 90 bp CCCAGCCTGCTCAGCGAGAGGTCAGAGCAAATGAGTGCTTGGTGGTaGTCTTGTAGGGAGAGGTATGAGGGGCAGTTTTCAGGGCCACGG +
Preference number: 2 (lower is better)
Translates to: PSLLSERSEQMSAWW*SCRERYEGQFSGPR
Trigger: CCGTGGCCCTGAAAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTGCTCTGACCTCTCGCTGAGCAGGCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CAA 90 bp AGGAGGAGCAGAGTCCAAATCCCAGGACTTCTGTTGTCGGCTGGATaGGGAGGTCCAGAAGGGCGGCTATCCTCTGCATCTTCATGCGCC +
Preference number: 2 (lower is better)
Translates to: RRSRVQIPGLLLSAG*GGPEGRLSSASSCA
Trigger: GGCGCATGAAGATGCAGAGGATAGCCGCCCTTCTGGACCTCCCAATCCAGCCGACAACAGAAGTCCTGGGATTTGGACTCTGCTCCTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR TCA 90 bp TGCACGTCAGAGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCAGAGGAGGGAGGGGCTaGTGGCACAGATCTGTTCCT +
Preference number: 2 (lower is better)
Translates to: CTSEATEKANAILRMQPARGGRG*WHRSVP
Trigger: AGGAACAGATCTGTGCCATCAGCCCCTCCCTCCTCT...GGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCTCTGACGTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR GCA 90 bp TGTGCACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGACGGAGAATTGTGGGTaGTCCCAGTGTGTCTTGCTG +
Preference number: 2 (lower is better)
Translates to: CAHWEGRQRSCPKDGASGTENCG*SQCVLL
Trigger: CAGCAAGACACACTGGGAGCACCCACAATTCTCCGT...CCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGTGCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR GCA 90 bp TGCACGTCAGAGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCGTCCTGAGGTCCTGTTaGTTCCTCCAGGACCCCATC +
Preference number: 2 (lower is better)
Translates to: CTSEATEKANAILRMQPAVLRSC*FLQDPI
Trigger: GATGGGGTCCTGGAGGAAGCAACAGGACCTCAGGAC...GGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCTCTGACGTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR GCA 90 bp GATTGGGAGGTCCAGAAGGGCGGCTATCCTCTGCATCTTCATGCGCCTGGCCTGAACACGAAGGTGGCCTaGAGGATAGGGAAGGGCTTA +
Preference number: 2 (lower is better)
Translates to: DWEVQKGGYPLHLHAPGLNTKVA*RIGKGL
Trigger: TAAGCCCTTCCCTATCCTGCAGGCCACCTTCGTGTT...CAGGCCAGGCGCATGAAGATGCAGAGGATAGCCGCCCTTCTGGACCTCCCAATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR CCA 90 bp CTACACAGGAGGCCGTTTCTAGGATCCCAGCCTGCTCAGCGAGAGGTCAGAGCAGGCCACGGAGAATTGTaGGTGCTCCCAGTGTGTCTT +
Preference number: 2 (lower is better)
Translates to: LHRRPFLGSQPAQREVRAGHGEL*VLPVCL
Trigger: AAGACACACTGGGAGCACCCACAATTCTCCGTGGCC...TGCTCTGACCTCTCGCTGAGCAGGCTGGGATCCTAGAAACGGCCTCCTGTGTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp AGGGCCCCAGACCCCTCTGAGGTGGCCAATGCCATCGTCTCTACACAGGAGGCCGAGCAAATGAGTGCTTaGTGGTTGTCTTGTAGGGAG +
Preference number: 2 (lower is better)
Translates to: RAPDPSEVANAIVSTQEAEQMSA*WLSCRE
Trigger: CTCCCTACAAGACAACCACCAAGCACTCATTTGCTC...GGCCTCCTGTGTAGAGACGATGGCATTGGCCACCTCAGAGGGGTCTGGGGCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp TGCACGTCAGAGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCCCTGGAGTAGTGACCTaGCTGGCCAGTTCAGAGGAG +
Preference number: 2 (lower is better)
Translates to: CTSEATEKANAILRMQPAPGVVT*LASSEE
Trigger: CTCCTCTGAACTGGCCAGCCAGGTCACTACTCCAGG...GGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCTCTGACGTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp ACTCAGTGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCACAAAGGGAGAGCTCTaGCGCACTCAGTGCTCTGTG +
Preference number: 2 (lower is better)
Translates to: TQCVSSVLVEQGDGGLLGTKGEL*RTQCSV
Trigger: CACAGAGCACTGAGTGCGCCAGAGCTCTCCCTTTGT...GCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACACTGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
3UTR CAA 90 bp CACAGCAAAGCCTGGCACCTTGTCTACGGATGCAAACACAGAGCGTaGCACTGTCGGGTCACTGCTGCCTCTGCGGCACTGCTCATAGAA +
Preference number: 2 (lower is better)
Translates to: HSKAWHLVYGCKHRA*HCRVTAASAALLIE
Trigger: TTCTATGAGCAGTGCCGCAGAGGCAGCAGTGACCCGACAGTGCAACGCTCTGTGTTTGCATCCGTAGACAAGGTGCCAGGCTTTGCTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR TCA 90 bp CTCTGGGACCTCCAGGTCAGGAGCTGTGGGACCTACTGGACCTTAGATCCCTCATTTCTCTTGGAAAACTaGGCATTGGGGCCTGCAGGG +
Preference number: 2 (lower is better)
Translates to: LWDLQVRSCGTYWTLDPSFLLEN*ALGPAG
Trigger: CCCTGCAGGCCCCAATGCTCAGTTTTCCAAGAGAAA...TGAGGGATCTAAGGTCCAGTAGGTCCCACAGCTCCTGACCTGGAGGTCCCAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR TCA 90 bp ATAGAGGGCGCTCACCACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGCCACCAACACCTAGGTaGGACAGTGTCCTTCTTCAG +
Preference number: 2 (lower is better)
Translates to: IEGAHHHTESDLWEVSHLPPTPR*DSVLLQ
Trigger: CTGAAGAAGGACACTGTCTCACCTAGGTGTTGGTGG...CAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGTGGTGAGCGCCCTCTAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR GCA 90 bp GGTGAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACTCTAGGATCCCAGCCTaGTCAGCGAGAGGTCAGAGC +
Preference number: 2 (lower is better)
Translates to: GETVSFFRVLRSCCFLQDSRIPA*SARGQS
Trigger: GCTCTGACCTCTCGCTGAGCAGGCTGGGATCCTAGA...GTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR GCA 90 bp CTCTGGGACCTCCAGGTCAGGAGCTGTGGGACCTACTGGACCTTAGATCCCTCAAAGACAGGGCTAGCCTaGTTCTTTGTCTACCCCTCC +
Preference number: 2 (lower is better)
Translates to: LWDLQVRSCGTYWTLDPSKTGLA*FFVYPS
Trigger: GGAGGGGTAGACAAAGAAGCAGGCTAGCCCTGTCTT...TGAGGGATCTAAGGTCCAGTAGGTCCCACAGCTCCTGACCTGGAGGTCCCAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR GCA 90 bp CTCTGGGACCTCCAGGTCAGGAGCTGTGGGACCTACTGGACCTTAGATCCCTCACTGGGTTGTACCCAATaGCACCAACACCTAGGTGAG +
Preference number: 2 (lower is better)
Translates to: LWDLQVRSCGTYWTLDPSLGCTQ*HQHLGE
Trigger: CTCACCTAGGTGTTGGTGGCATTGGGTACAACCCAG...TGAGGGATCTAAGGTCCAGTAGGTCCCACAGCTCCTGACCTGGAGGTCCCAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR GCA 90 bp AGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCCCAGCTCTGCTAGTCTaGCCTGGGGCAGTTGAAGAA +
Preference number: 2 (lower is better)
Translates to: RPQRKPMPSLGCSQPTPAPALLV*PGAVEE
Trigger: TTCTTCAACTGCCCCAGGGCAGACTAGCAGAGCTGG...GGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp TGGCTGTGGGGTCCACAGAGCTCTTGTTCCCAGTGGCCATCACTTTCCTCTCTTCTGTCACAAAATGCATaGGGGGTCCCTACCAGCGGG +
Preference number: 2 (lower is better)
Translates to: WLWGPQSSCSQWPSLSSLLSQNA*GVPTSG
Trigger: CCCGCTGGTAGGGACCCCCCATGCATTTTGTGACAG...AAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTGGACCCCACAGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp AGACTTCAACAGGGAGGAGGCAGCACTGCATGTTGCCATGGTGACGGTCAAAGCCTGTCACAAAATGCATaGGGGGTCCCTACCAGCGGG +
Preference number: 2 (lower is better)
Translates to: RLQQGGGSTACCHGDGQSLSQNA*GVPTSG
Trigger: CCCGCTGGTAGGGACCCCCCATGCATTTTGTGACAG...GCTTTGACCGTCACCATGGCAACATGCAGTGCTGCCTCCTCCCTGTTGAAGTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp CTACACAGGAGGCCGTTTCTAGGATCCCAGCCTGCTCAGCGAGAGGTCAGAGCACACTTCTGTGCACACTaGGAGGGAAGACAAAGGAGC +
Preference number: 2 (lower is better)
Translates to: LHRRPFLGSQPAQREVRAHFCAH*EGRQRS
Trigger: GCTCCTTTGTCTTCCCTCCCAGTGTGCACAGAAGTG...TGCTCTGACCTCTCGCTGAGCAGGCTGGGATCCTAGAAACGGCCTCCTGTGTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp ATAGAGGGCGCTCACCACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGCCAGGGCCTTTGGAGTaGCTGCCTCTAAGGAAGATT +
Preference number: 2 (lower is better)
Translates to: IEGAHHHTESDLWEVSHLPGPLE*LPLRKI
Trigger: AATCTTCCTTAGAGGCAGCCACTCCAAAGGCCCTGG...CAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGTGGTGAGCGCCCTCTAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp ATAGAGGGCGCTCACCACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGGTGGCATGCATGGCCTaGGAGATGGGAGCAATGATT +
Preference number: 2 (lower is better)
Translates to: IEGAHHHTESDLWEVSHLVACMA*EMGAMI
Trigger: AATCATTGCTCCCATCTCCCAGGCCATGCATGCCAC...CAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGTGGTGAGCGCCCTCTAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CAA 90 bp CTCCATCAGCAATGGGCCACAGTTCTGCTCACAGGAAGTCCACATTaGCTCACTTGGAGGTATGCCCTAGGCTCCTGGTTGCAGGAACCC +
Preference number: 2 (lower is better)
Translates to: LHQQWATVLLTGSPH*LTWRYALGSWLQEP
Trigger: GGGTTCCTGCAACCAGGAGCCTAGGGCATACCTCCAAGTGAGCAAATGTGGACTTCCTGTGAGCAGAACTGTGGCCCATTGCTGATGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR TCA 90 bp ACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGCCTAAGACTTCAACAGAGAGGAGGGAGGGGCTaGTGGCACAGATCTGTTCCT +
Preference number: 2 (lower is better)
Translates to: TTLSLTCGKCPTCLRLQQRGGRG*WHRSVP
Trigger: AGGAACAGATCTGTGCCATCAGCCCCTCCCTCCTCT...CTGTTGAAGTCTTAGGCAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR TCA 90 bp TGGCTGTGGGGTCCACAGAGCTCTTGTTCCCAGTGGCCATCACTTTCCTCTCTTGCCTTTGGTGGGTACTaGAACTGGGTGAGGCCAGAT +
Preference number: 2 (lower is better)
Translates to: WLWGPQSSCSQWPSLSSLAFGGY*NWVRPD
Trigger: ATCTGGCCTCACCCAGTTTCAGTACCCACCAAAGGC...AAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTGGACCCCACAGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR TCA 90 bp AGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCTTTCTCTTGGAAAACTaGGCATTGGGGCCTGCAGGG +
Preference number: 2 (lower is better)
Translates to: RPQRKPMPSLGCSQPTPAFLLEN*ALGPAG
Trigger: CCCTGCAGGCCCCAATGCTCAGTTTTCCAAGAGAAA...GGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR TCA 90 bp TGTGCACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTGCTGGGCTTGGAGTTaGCATCCATTTCATTCCCAA +
Preference number: 2 (lower is better)
Translates to: CAHWEGRQRSCPKDGASGCWAWS*HPFHSQ
Trigger: TTGGGAATGAAATGGATGTCAACTCCAAGCCCAGCA...CCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGTGCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
3UTR-3UTR GCA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGGGTGCCAGTGGGTCCTaGCCCCTGCGGCTGTCAGGA +
Preference number: 2 (lower is better)
Translates to: TQPSVLENILSLTACPLEGASGS*PLRLSG
Trigger: TCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACC...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR GCA 90 bp GACGTGGCATGCATGGCCTGGGAGATGGGAGCAATGATTTTGGAGGCTGACTCTGGAAGACAAAGGAGCTaGCCAAAGGACGGTGCCAGT +
Preference number: 2 (lower is better)
Translates to: DVACMAWEMGAMILEADSGRQRS*PKDGAS
Trigger: ACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCC...AGAGTCAGCCTCCAAAATCATTGCTCCCATCTCCCAGGCCATGCATGCCACGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR GCA 90 bp TGCACGTCAGAGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCAAGACAGGGCTAGCCTaGTTCTTTGTCTACCCCTCC +
Preference number: 2 (lower is better)
Translates to: CTSEATEKANAILRMQPAKTGLA*FFVYPS
Trigger: GGAGGGGTAGACAAAGAAGCAGGCTAGCCCTGTCTT...GGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCTCTGACGTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR GCA 90 bp AGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCAAGACAGGGCTAGCCTaGTTCTTTGTCTACCCCTCC +
Preference number: 2 (lower is better)
Translates to: RPQRKPMPSLGCSQPTPAKTGLA*FFVYPS
Trigger: GGAGGGGTAGACAAAGAAGCAGGCTAGCCCTGTCTT...GGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp GTTCTAGCCCTGAACGTGCAAGGGTTAAGAGCAGGGGAGAGCCTGGCCAGTTTTAAGGCCTGTGGGTACTaGGACTTCCTCACTCATGGC +
Preference number: 2 (lower is better)
Translates to: VLALNVQGLRAGESLASFKACGY*DFLTHG
Trigger: GCCATGAGTGAGGAAGTCCCAGTACCCACAGGCCTT...AAAACTGGCCAGGCTCTCCCCTGCTCTTAACCCTTGCACGTTCAGGGCTAGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
3UTR-3UTR CCA 90 bp TGGCTGTGGGGTCCACAGAGCTCTTGTTCCCAGTGGCCATCACTTTCCTCTCTTGGCCACGGAGAATTGTaGGTGCTCCCAGTGTGTCTT +
Preference number: 2 (lower is better)
Translates to: WLWGPQSSCSQWPSLSSLGHGEL*VLPVCL
Trigger: AAGACACACTGGGAGCACCCACAATTCTCCGTGGCC...AAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTGGACCCCACAGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp TGTGCACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGGAGCAAATGAGTGCTTaGTGGTTGTCTTGTAGGGAG +
Preference number: 2 (lower is better)
Translates to: CAHWEGRQRSCPKDGASGEQMSA*WLSCRE
Trigger: CTCCCTACAAGACAACCACCAAGCACTCATTTGCTC...CCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGTGCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp TGCACGTCAGAGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCGGTTTTCATACTGCGTaGAAGCAGCAAAGGGTGGGG +
Preference number: 2 (lower is better)
Translates to: CTSEATEKANAILRMQPAGFHTA*KQQRVG
Trigger: CCCCACCCTTTGCTGCTTCCACGCAGTATGAAAACC...GGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCTCTGACGTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp TGCACGTCAGAGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCGTGGCATGCATGGCCTaGGAGATGGGAGCAATGATT +
Preference number: 2 (lower is better)
Translates to: CTSEATEKANAILRMQPAVACMA*EMGAMI
Trigger: AATCATTGCTCCCATCTCCCAGGCCATGCATGCCAC...GGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCTCTGACGTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp ACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGCCTAAGACTTCAACAGCAGACGTGGCATGCATaGCCTGGGAGATGGGAGCAA +
Preference number: 2 (lower is better)
Translates to: TTLSLTCGKCPTCLRLQQQTWHA*PGRWEQ
Trigger: TTGCTCCCATCTCCCAGGCCATGCATGCCACGTCTG...CTGTTGAAGTCTTAGGCAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR TCA 90 bp TCAAATTACAAGAAAGTTCTAGCTTCCATTCCTCCCCTCAGGTTCAGTCCCCACGGCCCCAGACCCCTCTaGGGTGGCCAATGCCATCGT +
Preference number: 2 (lower is better)
Translates to: SNYKKVLASIPPLRFSPHGPRPL*GGQCHR
Trigger: ACGATGGCATTGGCCACCTCAGAGGGGTCTGGGGCC...GTGGGGACTGAACCTGAGGGGAGGAATGGAAGCTAGAACTTTCTTGTAATTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR TCA 90 bp ACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGGGAAAACAGAGGAAGTaGCAGCCACAACTTCAGAAT +
Preference number: 2 (lower is better)
Translates to: TLGGKTKELPKGRCQWVLGKQRK*QPQLQN
Trigger: ATTCTGAAGTTGTGGCTGTCACTTCCTCTGTTTTCC...CAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR TCA 90 bp CACAGAGCTCTTGTTCCCAGTGGCCATCACTTTCCTCTCTTCCCAGGGGCTAAGTTTCTCTTGGAAAACTaGGCATTGGGGCCTGCAGGG +
Preference number: 2 (lower is better)
Translates to: HRALVPSGHHFPLFPGAKFLLEN*ALGPAG
Trigger: CCCTGCAGGCCCCAATGCTCAGTTTTCCAAGAGAAA...CTTAGCCCCTGGGAAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR GCA 90 bp GGTGAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACACGGAGAATTGTGGGTaGTCCCAGTGTGTCTTGCTG +
Preference number: 2 (lower is better)
Translates to: GETVSFFRVLRSCCFLQDTENCG*SQCVLL
Trigger: CAGCAAGACACACTGGGAGCACCCACAATTCTCCGT...GTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp TCAAATTACAAGAAAGTTCTAGCTTCCATTCCTCCCCTCAGGTTCAGTCCCCACCCTCGCCACGGAGCCTaGAGTAGTGACCTGGCTGGC +
Preference number: 2 (lower is better)
Translates to: SNYKKVLASIPPLRFSPHPRHGA*SSDLAG
Trigger: GCCAGCCAGGTCACTACTCCAGGCTCCGTGGCGAGG...GTGGGGACTGAACCTGAGGGGAGGAATGGAAGCTAGAACTTTCTTGTAATTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp GCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCAAAAAAACACCCAAGGTTaGCTGTGGGGTCCACAGAGC +
Preference number: 2 (lower is better)
Translates to: ATEKANAILRMQPAYSCQKNTQG*LWGPQS
Trigger: GCTCTGTGGACCCCACAGCCAACCTTGGGTGTTTTT...TTGGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGC
54% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp ACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACCCCATCCCACATTTGCTCACTTaGAGGTATGCCCTAGGCTCC +
Preference number: 2 (lower is better)
Translates to: TVSFFRVLRSCCFLQDPIPHLLT*RYALGS
Trigger: GGAGCCTAGGGCATACCTCCAAGTGAGCAAATGTGG...GATGGGGTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp TGGCACCTTGTCTACGGATGCAAACACAGAGCGTTGCACTGTCGGGTCACTGCTACTTCTGTTGTCGGCTaGATTGGGAGGTCCAGAAGG +
Preference number: 2 (lower is better)
Translates to: WHLVYGCKHRALHCRVTATSVVG*IGRSRR
Trigger: CCTTCTGGACCTCCCAATCCAGCCGACAACAGAAGT...AGCAGTGACCCGACAGTGCAACGCTCTGTGTTTGCATCCGTAGACAAGGTGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR CAA 90 bp GACAGGTGCATTGTCTCCCCCTCAGAGCTCCTGGCCGATGAGTTCTaGCTGGGCTTGGAGTTGACATCCATTTCATTCCCAATCACTGAC +
Preference number: 2 (lower is better)
Translates to: DRCIVSPSELLADEF*LGLELTSISFPITD
Trigger: GTCAGTGATTGGGAATGAAATGGATGTCAACTCCAAGCCCAGCAAGAACTCATCGGCCAGGAGCTCTGAGGGGGAGACAATGCACCTGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115823.2
ENSMUST00000115828.9
3UTR-3UTR TCA 90 bp TCTCTCTCATCTTGTTCAGAAGTACCTCAGTGTTTCAGGGAGAGACATCATCACGGCCCCAGACCCCTCTaGGGTGGCCAATGCCATCGT +
Preference number: 2 (lower is better)
Translates to: SLSSCSEVPQCFRERHHHGPRPL*GGQCHR
Trigger: ACGATGGCATTGGCCACCTCAGAGGGGTCTGGGGCC...GTGATGATGTCTCTCCCTGAAACACTGAGGTACTTCTGAACAAGATGAGAGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR TCA 90 bp TGGCTGTGGGGTCCACAGAGCTCTTGTTCCCAGTGGCCATCACTTTCCTCTCTTCTAAGGAAGATTGGTTaGCTTCCTGACCCAGCCTTC +
Preference number: 2 (lower is better)
Translates to: WLWGPQSSCSQWPSLSSLLRKIG*LPDPAF
Trigger: GAAGGCTGGGTCAGGAAGTCAACCAATCTTCCTTAG...AAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTGGACCCCACAGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR TCA 90 bp GGGCCACAGCAAAGCCTGGCACCTTGTCTACGGATGCAAACACAGAGCGTTGCATGCTGGGCTTGGAGTTaGCATCCATTTCATTCCCAA +
Preference number: 2 (lower is better)
Translates to: GPQQSLAPCLRMQTQSVACWAWS*HPFHSQ
Trigger: TTGGGAATGAAATGGATGTCAACTCCAAGCCCAGCA...TGCAACGCTCTGTGTTTGCATCCGTAGACAAGGTGCCAGGCTTTGCTGTGGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR GCA 90 bp TTTCATTCCCAATCACTGACTGGTCTAGGTGAGGCTGAGGCTGTTCTGGAGTCGGGAAGACAAAGGAGCTaGCCAAAGGACGGTGCCAGT +
Preference number: 2 (lower is better)
Translates to: FHSQSLTGLGEAEAVLESGRQRS*PKDGAS
Trigger: ACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCC...CGACTCCAGAACAGCCTCAGCCTCACCTAGACCAGTCAGTGATTGGGAATGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
3UTR-3UTR GCA 90 bp GCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCAACAGGAAGTCCACATTTaGTCACTTGGAGGTATGCCC +
Preference number: 2 (lower is better)
Translates to: ATEKANAILRMQPAYSCQQEVHI*SLGGMP
Trigger: GGGCATACCTCCAAGTGAGCAAATGTGGACTTCCTG...TTGGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR GCA 90 bp ACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACCCCATCCAGGAAGTCCACATTTaGTCACTTGGAGGTATGCCC +
Preference number: 2 (lower is better)
Translates to: TVSFFRVLRSCCFLQDPIQEVHI*SLGGMP
Trigger: GGGCATACCTCCAAGTGAGCAAATGTGGACTTCCTG...GATGGGGTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR GCA 90 bp AGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCTCTGGAGAGCACAGTTaGCAAGTTAGCAGAGTACTC +
Preference number: 2 (lower is better)
Translates to: RPQRKPMPSLGCSQPTPASGEHS*QVSRVL
Trigger: GAGTACTCTGCTAACTTGGCAACTGTGCTCTCCAGA...GGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR GCA 90 bp TGCACGTCAGAGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTCTGGAGAGCACAGTTaGCAAGTTAGCAGAGTACTC +
Preference number: 2 (lower is better)
Translates to: CTSEATEKANAILRMQPASGEHS*QVSRVL
Trigger: GAGTACTCTGCTAACTTGGCAACTGTGCTCTCCAGA...GGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCTCTGACGTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR GCA 90 bp ATGACAGGGATGGAGAGCTATGCTGGTTTATGCACTGGGCCACAGCAAAGCCTGTCCACTCCTGTCACCTaGATGTCCTGTAGAAGGCCA +
Preference number: 2 (lower is better)
Translates to: MTGMESYAGLCTGPQQSLSTPVT*MSCRRP
Trigger: TGGCCTTCTACAGGACATGCAGGTGACAGGAGTGGA...CAGGCTTTGCTGTGGCCCAGTGCATAAACCAGCATAGCTCTCCATCCCTGTCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR CCA 90 bp TGTGCACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGAGACTCCGAGCCTTATaGTTGAGGGCTTTTTCTTTT +
Preference number: 2 (lower is better)
Translates to: CAHWEGRQRSCPKDGASGRLRAL*LRAFSF
Trigger: AAAAGAAAAAGCCCTCAACCATAAGGCTCGGAGTCT...CCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGTGCACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp CTTTCTCTTGGAAAACTGAGCATTGGGGCCTGCAGGGAAGTTAGCTTAGCAGAGGCGAGAGCAGAGGCTTaGCCTTCTCACCCATGTGAC +
Preference number: 2 (lower is better)
Translates to: LSLGKLSIGACREVSLAEARAEA*PSHPCD
Trigger: GTCACATGGGTGAGAAGGCCAAGCCTCTGCTCTCGC...CTCTGCTAAGCTAACTTCCCTGCAGGCCCCAATGCTCAGTTTTCCAAGAGAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp CAAATGAGTGCTTGGTGGTTGTCTTGTAGGGAGAGGTATGAGGGGCAGTTTTCAGGGTTCCGCAGGCTCTaGGTTTACAGCACCCTCAGC +
Preference number: 2 (lower is better)
Translates to: QMSAWWLSCRERYEGQFSGFRRL*VYSTLS
Trigger: GCTGAGGGTGCTGTAAACCCAGAGCCTGCGGAACCC...TGAAAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
3UTR CAA 90 bp ATTGTCTCCCCCTCAGAGCTCCTGGCCGATGAGTTCTTGCTGGGCTaGGAGTTGACATCCATTTCATTCCCAATCACTGACTGGTCTAGG +
Preference number: 2 (lower is better)
Translates to: IVSPSELLADEFLLG*ELTSISFPITDWSR
Trigger: CCTAGACCAGTCAGTGATTGGGAATGAAATGGATGTCAACTCCAAGCCCAGCAAGAACTCATCGGCCAGGAGCTCTGAGGGGGAGACAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115823.2
ENSMUST00000115828.9
3UTR-3UTR TCA 90 bp CTTTCTCTTGGAAAACTGAGCATTGGGGCCTGCAGGGAAGTTAGCTTAGCAGAGGCCTTTGGTGGGTACTaGAACTGGGTGAGGCCAGAT +
Preference number: 2 (lower is better)
Translates to: LSLGKLSIGACREVSLAEAFGGY*NWVRPD
Trigger: ATCTGGCCTCACCCAGTTTCAGTACCCACCAAAGGC...CTCTGCTAAGCTAACTTCCCTGCAGGCCCCAATGCTCAGTTTTCCAAGAGAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR GCA 90 bp AGTTCTAGCCCTGAACGTGCAAGGGTTAAGAGCAGGGGAGAGCCTGGCCAGTTTGACTGGATACATTGTTaGAGAAGAGGGAAGAAGCCG +
Preference number: 2 (lower is better)
Translates to: SSSPERARVKSRGEPGQFDWIHC*RRGKKP
Trigger: CGGCTTCTTCCCTCTTCTGCAACAATGTATCCAGTC...AAACTGGCCAGGCTCTCCCCTGCTCTTAACCCTTGCACGTTCAGGGCTAGAACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
3UTR-3UTR GCA 90 bp AGACTTCAACAGGGAGGAGGCAGCACTGCATGTTGCCATGGTGACGGTCAAAGCTCTGGAGAGCACAGTTaGCAAGTTAGCAGAGTACTC +
Preference number: 2 (lower is better)
Translates to: RLQQGGGSTACCHGDGQSSGEHS*QVSRVL
Trigger: GAGTACTCTGCTAACTTGGCAACTGTGCTCTCCAGA...GCTTTGACCGTCACCATGGCAACATGCAGTGCTGCCTCCTCCCTGTTGAAGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp AGTTCTAGCCCTGAACGTGCAAGGGTTAAGAGCAGGGGAGAGCCTGGCCAGTTTGAAGGGCAGGAGGACTaGATACATTGTTGCAGAAGA +
Preference number: 2 (lower is better)
Translates to: SSSPERARVKSRGEPGQFEGQED*IHCCRR
Trigger: TCTTCTGCAACAATGTATCCAGTCCTCCTGCCCTTC...AAACTGGCCAGGCTCTCCCCTGCTCTTAACCCTTGCACGTTCAGGGCTAGAACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
3UTR-3UTR CCA 90 bp AGACTTCAACAGGGAGGAGGCAGCACTGCATGTTGCCATGGTGACGGTCAAAGCGAGCAAATGAGTGCTTaGTGGTTGTCTTGTAGGGAG +
Preference number: 2 (lower is better)
Translates to: RLQQGGGSTACCHGDGQSEQMSA*WLSCRE
Trigger: CTCCCTACAAGACAACCACCAAGCACTCATTTGCTC...GCTTTGACCGTCACCATGGCAACATGCAGTGCTGCCTCCTCCCTGTTGAAGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp ATAGAGGGCGCTCACCACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGAGACTCCGAGCCTTATaGTTGAGGGCTTTTTCTTTT +
Preference number: 2 (lower is better)
Translates to: IEGAHHHTESDLWEVSHLRLRAL*LRAFSF
Trigger: AAAAGAAAAAGCCCTCAACCATAAGGCTCGGAGTCT...CAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGTGGTGAGCGCCCTCTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp ACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACCCCATCTTCTGTCACGGACACTaGCTAATGGGTCTTTCTTGG +
Preference number: 2 (lower is better)
Translates to: TVSFFRVLRSCCFLQDPIFCHGH*LMGLSW
Trigger: CCAAGAAAGACCCATTAGCCAGTGTCCGTGACAGAA...GATGGGGTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp CCCTCTGGGAGCAACCTTAAAGCCAGCTGTGGGAACAGGCTTATTGTTGGTGAACCAGGGCCTTTGGAGTaGCTGCCTCTAAGGAAGATT +
Preference number: 2 (lower is better)
Translates to: PSGSNLKASCGNRLIVGEPGPLE*LPLRKI
Trigger: AATCTTCCTTAGAGGCAGCCACTCCAAAGGCCCTGG...TTCACCAACAATAAGCCTGTTCCCACAGCTGGCTTTAAGGTTGCTCCCAGAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp TCAAATTACAAGAAAGTTCTAGCTTCCATTCCTCCCCTCAGGTTCAGTCCCCACAGACCAGGGCAGACGTaGCATGCATGGCCTGGGAGA +
Preference number: 2 (lower is better)
Translates to: SNYKKVLASIPPLRFSPHRPGQT*HAWPGR
Trigger: TCTCCCAGGCCATGCATGCCACGTCTGCCCTGGTCT...GTGGGGACTGAACCTGAGGGGAGGAATGGAAGCTAGAACTTTCTTGTAATTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CAA 90 bp GCTTATCTAGGTTTGCTTCTCCACAGGTTTCTACCCAGAGTAACCTaGTCCACTTCTGTGCACACTGGGAGGGAAGACAAAGGAGCTGCC +
Preference number: 2 (lower is better)
Translates to: AYLGLLLHRFLPRVT*STSVHTGREDKGAA
Trigger: GGCAGCTCCTTTGTCTTCCCTCCCAGTGTGCACAGAAGTGGACAAGGTTACTCTGGGTAGAAACCTGTGGAGAAGCAAACCTAGATAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR TCA 90 bp AGACTTCAACAGGGAGGAGGCAGCACTGCATGTTGCCATGGTGACGGTCAAAGCGGAAAACAGAGGAAGTaGCAGCCACAACTTCAGAAT +
Preference number: 2 (lower is better)
Translates to: RLQQGGGSTACCHGDGQSGKQRK*QPQLQN
Trigger: ATTCTGAAGTTGTGGCTGTCACTTCCTCTGTTTTCC...GCTTTGACCGTCACCATGGCAACATGCAGTGCTGCCTCCTCCCTGTTGAAGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR TCA 90 bp TCAAATTACAAGAAAGTTCTAGCTTCCATTCCTCCCCTCAGGTTCAGTCCCCACAGAGGAGGGAGGGGCTaGTGGCACAGATCTGTTCCT +
Preference number: 2 (lower is better)
Translates to: SNYKKVLASIPPLRFSPHRGGRG*WHRSVP
Trigger: AGGAACAGATCTGTGCCATCAGCCCCTCCCTCCTCT...GTGGGGACTGAACCTGAGGGGAGGAATGGAAGCTAGAACTTTCTTGTAATTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp TGCACGTCAGAGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCAGACTCCGAGCCTTATaGTTGAGGGCTTTTTCTTTT +
Preference number: 2 (lower is better)
Translates to: CTSEATEKANAILRMQPARLRAL*LRAFSF
Trigger: AAAAGAAAAAGCCCTCAACCATAAGGCTCGGAGTCT...GGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCTCTGACGTGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp CACAGAGCTCTTGTTCCCAGTGGCCATCACTTTCCTCTCTTCCCAGGGGCTAAGCTAATGGGTCTTTCTTaGATGAAGAGAGAAGGGAGC +
Preference number: 2 (lower is better)
Translates to: HRALVPSGHHFPLFPGAKLMGLS*MKREGS
Trigger: GCTCCCTTCTCTCTTCATCCAAGAAAGACCCATTAG...CTTAGCCCCTGGGAAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp ACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGCCTAAGACTTCAACAGTTCTGTCACGGACACTaGCTAATGGGTCTTTCTTGG +
Preference number: 2 (lower is better)
Translates to: TTLSLTCGKCPTCLRLQQFCHGH*LMGLSW
Trigger: CCAAGAAAGACCCATTAGCCAGTGTCCGTGACAGAA...CTGTTGAAGTCTTAGGCAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGGAGGGAGGGGGAGGGTaGGATTCTGCTTTTGGTCAC +
Preference number: 2 (lower is better)
Translates to: TQPSVLENILSLTACPLEEGGGG*DSAFGH
Trigger: GTGACCAAAAGCAGAATCCCACCCTCCCCCTCCCTC...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp CTTTCTCTTGGAAAACTGAGCATTGGGGCCTGCAGGGAAGTTAGCTTAGCAGAGGGTTTTCATACTGCGTaGAAGCAGCAAAGGGTGGGG +
Preference number: 2 (lower is better)
Translates to: LSLGKLSIGACREVSLAEGFHTA*KQQRVG
Trigger: CCCCACCCTTTGCTGCTTCCACGCAGTATGAAAACC...CTCTGCTAAGCTAACTTCCCTGCAGGCCCCAATGCTCAGTTTTCCAAGAGAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGCCTGGAGTAGTGACCTaGCTGGCCAGTTCAGAGGAG +
Preference number: 2 (lower is better)
Translates to: TQPSVLENILSLTACPLEPGVVT*LASSEE
Trigger: CTCCTCTGAACTGGCCAGCCAGGTCACTACTCCAGG...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR TCA 90 bp TTTCATTCCCAATCACTGACTGGTCTAGGTGAGGCTGAGGCTGTTCTGGAGTCGATAATGCAGCGGATATaGTCCGAGAACACGAAGGTG +
Preference number: 2 (lower is better)
Translates to: FHSQSLTGLGEAEAVLESIMQRI*SENTKV
Trigger: CACCTTCGTGTTCTCGGATCATATCCGCTGCATTAT...CGACTCCAGAACAGCCTCAGCCTCACCTAGACCAGTCAGTGATTGGGAATGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR GCA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGGGAAGACAAAGGAGCTaGCCAAAGGACGGTGCCAGT +
Preference number: 2 (lower is better)
Translates to: TQPSVLENILSLTACPLEGRQRS*PKDGAS
Trigger: ACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCC...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp CAAATGAGTGCTTGGTGGTTGTCTTGTAGGGAGAGGTATGAGGGGCAGTTTTCACACTTCTGTGCACACTaGGAGGGAAGACAAAGGAGC +
Preference number: 2 (lower is better)
Translates to: QMSAWWLSCRERYEGQFSHFCAH*EGRQRS
Trigger: GCTCCTTTGTCTTCCCTCCCAGTGTGCACAGAAGTG...TGAAAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CAA 90 bp CCTCTGGGAGCAACCTTAAAGCCAGCTGTGGGAACAGGCTTATTGTaGGTGAATTTTACACAGCAGTTGCCCTTTCAGGGTTTGCTGAAC +
Preference number: 2 (lower is better)
Translates to: PLGATLKPAVGTGLL*VNFTQQLPFQGLLN
Trigger: GTTCAGCAAACCCTGAAAGGGCAACTGCTGTGTAAAATTCACCAACAATAAGCCTGTTCCCACAGCTGGCTTTAAGGTTGCTCCCAGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CAA 90 bp AACCCTCTGGGAGCAACCTTAAAGCCAGCTGTGGGAACAGGCTTATaGTTGGTGAATTTTACACAGCAGTTGCCCTTTCAGGGTTTGCTG +
Preference number: 2 (lower is better)
Translates to: NPLGATLKPAVGTGL*LVNFTQQLPFQGLL
Trigger: CAGCAAACCCTGAAAGGGCAACTGCTGTGTAAAATTCACCAACAATAAGCCTGTTCCCACAGCTGGCTTTAAGGTTGCTCCCAGAGGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR TCA 90 bp CCCTCTGGGAGCAACCTTAAAGCCAGCTGTGGGAACAGGCTTATTGTTGGTGAAGGAAAACAGAGGAAGTaGCAGCCACAACTTCAGAAT +
Preference number: 2 (lower is better)
Translates to: PSGSNLKASCGNRLIVGEGKQRK*QPQLQN
Trigger: ATTCTGAAGTTGTGGCTGTCACTTCCTCTGTTTTCC...TTCACCAACAATAAGCCTGTTCCCACAGCTGGCTTTAAGGTTGCTCCCAGAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp TCTCTCTCATCTTGTTCAGAAGTACCTCAGTGTTTCAGGGAGAGACATCATCACGGCCACGGAGAATTGTaGGTGCTCCCAGTGTGTCTT +
Preference number: 2 (lower is better)
Translates to: SLSSCSEVPQCFRERHHHGHGEL*VLPVCL
Trigger: AAGACACACTGGGAGCACCCACAATTCTCCGTGGCC...GTGATGATGTCTCTCCCTGAAACACTGAGGTACTTCTGAACAAGATGAGAGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp CCCTCTGGGAGCAACCTTAAAGCCAGCTGTGGGAACAGGCTTATTGTTGGTGAAAGATCTGTTCCTTGCTaGCACATGCCTACAACTATG +
Preference number: 2 (lower is better)
Translates to: PSGSNLKASCGNRLIVGERSVPC*HMPTTM
Trigger: CATAGTTGTAGGCATGTGCCAGCAAGGAACAGATCT...TTCACCAACAATAAGCCTGTTCCCACAGCTGGCTTTAAGGTTGCTCCCAGAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CAA 90 bp TCACCTGTTTTGCAGCTGGGCCCCAGTTGGGCATCCACTTGCATCTaGGGAAGCAGATTATATCTGAGGATGACTTTCTGTGCCTTAAAT +
Preference number: 2 (lower is better)
Translates to: SPVLQLGPSWASTCI*GSRLYLRMTFCALN
Trigger: ATTTAAGGCACAGAAAGTCATCCTCAGATATAATCTGCTTCCCAAGATGCAAGTGGATGCCCAACTGGGGCCCAGCTGCAAAACAGGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR GCA 90 bp GGTGAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACGAGGATGACTTTCTGTaGCTTAAATCCTTTGATTTC +
Preference number: 2 (lower is better)
Translates to: GETVSFFRVLRSCCFLQDEDDFL*LKSFDF
Trigger: GAAATCAAAGGATTTAAGGCACAGAAAGTCATCCTC...GTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTCACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR TCA 90 bp TCAAATTACAAGAAAGTTCTAGCTTCCATTCCTCCCCTCAGGTTCAGTCCCCACTTAGCAGAGTACTCCTaGAGACTGGGTTGTACCCAA +
Preference number: 2 (lower is better)
Translates to: SNYKKVLASIPPLRFSPHLAEYS*RLGCTQ
Trigger: TTGGGTACAACCCAGTCTTCAGGAGTACTCTGCTAA...GTGGGGACTGAACCTGAGGGGAGGAATGGAAGCTAGAACTTTCTTGTAATTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGTTCTGTCACGGACACTaGCTAATGGGTCTTTCTTGG +
Preference number: 2 (lower is better)
Translates to: TQPSVLENILSLTACPLEFCHGH*LMGLSW
Trigger: CCAAGAAAGACCCATTAGCCAGTGTCCGTGACAGAA...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGAGCACTGCTTTCTCTTaGAAAACTGAGCATTGGGGC +
Preference number: 2 (lower is better)
Translates to: TQPSVLENILSLTACPLESTAFS*KTEHWG
Trigger: GCCCCAATGCTCAGTTTTCCAAGAGAAAGCAGTGCT...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CCA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGAGATCTGTTCCTTGCTaGCACATGCCTACAACTATG +
Preference number: 2 (lower is better)
Translates to: TQPSVLENILSLTACPLERSVPC*HMPTTM
Trigger: CATAGTTGTAGGCATGTGCCAGCAAGGAACAGATCT...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR TCA 90 bp GTTCACATATTCTGGAGCAAAAGGGACTTCTTCACATTCTATCAAATCTTGTTGCCCTGGACTTTCCACTaGATCTCTCTTTTAGGGAAG +
Preference number: 2 (lower is better)
Translates to: VHIFWSKRDFFTFYQILLPWTFH*ISLLGK
Trigger: CTTCCCTAAAAGAGAGATTCAGTGGAAAGTCCAGGG...CAACAAGATTTGATAGAATGTGAAGAAGTCCCTTTTGCTCCAGAATATGTGAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
3UTR CAA 90 bp TGTGACTGTGTGAAATATATTTATTGCATCTACAAAAGATCAGACTaGGTTTACCCATGCCTTATTTACAACTGCACGTCAGAGGCCACA +
Preference number: 2 (lower is better)
Translates to: CDCVKYIYCIYKRSD*VYPCLIYNCTSEAT
Trigger: TGTGGCCTCTGACGTGCAGTTGTAAATAAGGCATGGGTAAACCAAGTCTGATCTTTTGTAGATGCAATAAATATATTTCACACAGTCACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR GCA 72 bp CAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTaGCCCCTGCGGCTGTCAGGATCAGGGGCAGGGCCC +
Preference number: 3 (lower is better)
Translates to: QRSCPKDGASGS*PLRLSGSGAGP
Trigger: GGGCCCTGCCCCTGATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTTTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp ACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATCAGGGGCAGGGCCCCTTGACTGTGCGTGAGTaGCCGTGGCAGCTGTTGGTC +
Preference number: 3 (lower is better)
Translates to: TVPVGPAPCGCQDQGQGPLTVRE*PWQLLV
Trigger: GACCAACAGCTGCCACGGCAACTCACGCACAGTCAA...GGGGCCCTGCCCCTGATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
3UTR GCA 72 bp GTGGGCTGCTGGGCGGGAAGGAGGCTAGGGGACAGGTaGATTGTCTCCCCCTCAGAGCTCCTGGCCGATGAG +
Preference number: 3 (lower is better)
Translates to: VGCWAGRRLGDR*IVSPSELLADE
Trigger: CTCATCGGCCAGGAGCTCTGAGGGGGAGACAATGCACCTGTCCCCTAGCCTCCTTCCCGCCCAGCAGCCCAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115823.2
ENSMUST00000115828.9
3UTR GCA 72 bp GGAGGTCCAGAAGGGCGGCTATCCTCTGCATCTTCATaGGCCTGGCCTGGATGCGGCCCTTGGCCAGGCGCT +
Preference number: 3 (lower is better)
Translates to: GGPEGRLSSASS*AWPGCGPWPGA
Trigger: AGCGCCTGGCCAAGGGCCGCATCCAGGCCAGGCGCATGAAGATGCAGAGGATAGCCGCCCTTCTGGACCTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR CCA 72 bp CCAGAAGGGCGGCTATCCTCTGCATCTTCATGCGCCTaGCCTGGATGCGGCCCTTGGCCAGGCGCTGCTTGG +
Preference number: 3 (lower is better)
Translates to: PEGRLSSASSCA*PGCGPWPGAAW
Trigger: CCAAGCAGCGCCTGGCCAAGGGCCGCATCCAGGCCAGGCGCATGAAGATGCAGAGGATAGCCGCCCTTCTGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR CAA 90 bp GGTGGGCTGCTGGGCGGGAAGGAGGCTAGGGGACAGGTGCATTGTCTCCCCCTCCAGGGCCACGGAGAATaGTGGGTGCTCCCAGTGTGT +
Preference number: 3 (lower is better)
Translates to: GGLLGGKEARGQVHCLPLQGHGE*WVLPVC
Trigger: ACACACTGGGAGCACCCACAATTCTCCGTGGCCCTG...GAGGGGGAGACAATGCACCTGTCCCCTAGCCTCCTTCCCGCCCAGCAGCCCACC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
3UTR CCA 72 bp AGGGCGGCTATCCTCTGCATCTTCATGCGCCTGGCCTaGATGCGGCCCTTGGCCAGGCGCTGCTTGGCAATA +
Preference number: 3 (lower is better)
Translates to: RAAILCIFMRLA*MRPLARRCLAI
Trigger: TATTGCCAAGCAGCGCCTGGCCAAGGGCCGCATCCAGGCCAGGCGCATGAAGATGCAGAGGATAGCCGCCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR CCA 72 bp ACTGGTCTAGGTGAGGCTGAGGCTGTTCTGGAGTCGTaGGGGCATCTGCCGGGCTCTGGGTTGCTGAGGGTG +
Preference number: 3 (lower is better)
Translates to: TGLGEAEAVLES*GHLPGSGLLRV
Trigger: CACCCTCAGCAACCCAGAGCCCGGCAGATGCCCCCACGACTCCAGAACAGCCTCAGCCTCACCTAGACCAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR CAA 90 bp ACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATCAGGGGCAGGGCCCCCACAGGCTTGTAGAGTaGGGGACAGAGAAAGAAGAA +
Preference number: 3 (lower is better)
Translates to: TVPVGPAPCGCQDQGQGPHRLVE*GTEKEE
Trigger: TTCTTCTTTCTCTGTCCCCAACTCTACAAGCCTGTG...GGGGCCCTGCCCCTGATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp CACCTTGTCTACGGATGCAAACACAGAGCGTTGCACTGTCGGGTCACTGCTGCCGCCTGGATGCGGCCCTaGGCCAGGCGCTGCTTGGCA +
Preference number: 3 (lower is better)
Translates to: HLVYGCKHRALHCRVTAAAWMRP*ARRCLA
Trigger: TGCCAAGCAGCGCCTGGCCAAGGGCCGCATCCAGGC...GGCAGCAGTGACCCGACAGTGCAACGCTCTGTGTTTGCATCCGTAGACAAGGTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR GCA 72 bp AAGAGCCTCCTGAGTCACAGTGGCTGGTGCTTCCACTaGCACCAGGGCTCCCACTGGCAAATGGTGGCGACG +
Preference number: 3 (lower is better)
Translates to: KSLLSHSGWCFH*HQGSHWQMVAT
Trigger: CGTCGCCACCATTTGCCAGTGGGAGCCCTGGTGGCAGTGGAAGCACCAGCCACTGTGACTCAGGAGGCTCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR CCA 72 bp GAGAAGGGAGCGTGCCTGCTCGGAGCAGCGTCTGTGTaGTGTCCTGAGCAGGGAACAGACGTCATCCAGGTC +
Preference number: 3 (lower is better)
Translates to: EKGACLLGAASV*CPEQGTDVIQV
Trigger: GACCTGGATGACGTCTGTTCCCTGCTCAGGACACCACACAGACGCTGCTCCGAGCAGGCACGCTCCCTTCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CCA 72 bp TCTGTAGGAAGCCATAGAGGGCCTCGCCACGGAGCCTaGAGTAGTGACCTGGCTGGCCAGTTCAGAGGAGGG +
Preference number: 3 (lower is better)
Translates to: SVGSHRGPRHGA*SSDLAGQFRGG
Trigger: CCCTCCTCTGAACTGGCCAGCCAGGTCACTACTCCAGGCTCCGTGGCGAGGCCCTCTATGGCTTCCTACAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CCA 72 bp AGTGGCTGGTGCTTCCACTGCCACCAGGGCTCCCACTaGCAAATGGTGGCGACGGTGATGACAGGGATGGAG +
Preference number: 3 (lower is better)
Translates to: SGWCFHCHQGSH*QMVATVMTGME
Trigger: CTCCATCCCTGTCATCACCGTCGCCACCATTTGCCAGTGGGAGCCCTGGTGGCAGTGGAAGCACCAGCCACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR CAA 90 bp TGTGCACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGCAGGGCCACGGAGAATaGTGGGTGCTCCCAGTGTGT +
Preference number: 3 (lower is better)
Translates to: CAHWEGRQRSCPKDGASGQGHGE*WVLPVC
Trigger: ACACACTGGGAGCACCCACAATTCTCCGTGGCCCTG...CCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGTGCACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp TGGCTGGTGCTTCCACTGCCACCAGGGCTCCCACTGGCAAATGGTGGCGACGGTATCCCAGGACTTCTGTaGTCGGCTGGATTGGGAGGT +
Preference number: 3 (lower is better)
Translates to: WLVLPLPPGLPLANGGDGIPGLL*SAGLGG
Trigger: ACCTCCCAATCCAGCCGACAACAGAAGTCCTGGGAT...ACCGTCGCCACCATTTGCCAGTGGGAGCCCTGGTGGCAGTGGAAGCACCAGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR GCA 72 bp TGGGTTTACAGCACCCTCAGCTGGGGTCTCCGTATCTaGTGCAGGCAGTGTGGGGAGCTGGGAGATGCCAGA +
Preference number: 3 (lower is better)
Translates to: WVYSTLSWGLRI*CRQCGELGDAR
Trigger: TCTGGCATCTCCCAGCTCCCCACACTGCCTGCAGCAGATACGGAGACCCCAGCTGAGGGTGCTGTAAACCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
3UTR GCA 72 bp CCTGGCACCTTGTCTACGGATGCAAACACAGAGCGTTaGACTGTCGGGTCACTGCTGCCTCTGCGGCACTGC +
Preference number: 3 (lower is better)
Translates to: PGTLSTDANTER*TVGSLLPLRHC
Trigger: GCAGTGCCGCAGAGGCAGCAGTGACCCGACAGTGCAACGCTCTGTGTTTGCATCCGTAGACAAGGTGCCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR GCA 72 bp GTGCAGAGGAAGAGCCTCCTGAGTCACAGTGGCTGGTaGTTCCACTGCCACCAGGGCTCCCACTGGCAAATG +
Preference number: 3 (lower is better)
Translates to: VQRKSLLSHSGW*FHCHQGSHWQM
Trigger: CATTTGCCAGTGGGAGCCCTGGTGGCAGTGGAAGCACCAGCCACTGTGACTCAGGAGGCTCTTCCTCTGCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR CCA 72 bp GGGTGCTCCCAGTGTGTCTTGCTGTCACAAAATGCATaGGGGGTCCCTACCAGCGGGCCGCACACACAAAGG +
Preference number: 3 (lower is better)
Translates to: GCSQCVLLSQNA*GVPTSGPHTQR
Trigger: CCTTTGTGTGTGCGGCCCGCTGGTAGGGACCCCCCATGCATTTTGTGACAGCAAGACACACTGGGAGCACCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CCA 72 bp CCCTCAGGTTCAGTCCCCACAAAGCATGAGTCCTGCTaGCAGAAGCAGGCACTTCCCTGGCCAGACCTTCCC +
Preference number: 3 (lower is better)
Translates to: PSGSVPTKHESC*QKQALPWPDLP
Trigger: GGGAAGGTCTGGCCAGGGAAGTGCCTGCTTCTGCCAGCAGGACTCATGCTTTGTGGGGACTGAACCTGAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp AAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGCACAGGCTTGTAGAGTaGGGGACAGAGAAAGAAGAA +
Preference number: 3 (lower is better)
Translates to: KELPKGRCQWVLPPAAVRHRLVE*GTEKEE
Trigger: TTCTTCTTTCTCTGTCCCCAACTCTACAAGCCTGTG...CCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp GGTGGGCTGCTGGGCGGGAAGGAGGCTAGGGGACAGGTGCATTGTCTCCCCCTCGAGTTCTTGCTGGGCTaGGAGTTGACATCCATTTCA +
Preference number: 3 (lower is better)
Translates to: GGLLGGKEARGQVHCLPLEFLLG*ELTSIS
Trigger: TGAAATGGATGTCAACTCCAAGCCCAGCAAGAACTC...GAGGGGGAGACAATGCACCTGTCCCCTAGCCTCCTTCCCGCCCAGCAGCCCACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115823.2
ENSMUST00000115828.9
3UTR-3UTR CAA 90 bp CAAGGAGATGGTGGGCTGCTGGGCGGGAAGGAGGCTAGGGGACAGGTGCATTGTAGAAGGCCAGCAAACTaGACCACTCCCCAGCCAAGT +
Preference number: 3 (lower is better)
Translates to: QGDGGLLGGKEARGQVHCRRPAN*TTPQPS
Trigger: ACTTGGCTGGGGAGTGGTCAAGTTTGCTGGCCTTCT...ACAATGCACCTGTCCCCTAGCCTCCTTCCCGCCCAGCAGCCCACCATCTCCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR TCA 72 bp CATGGCCTGGGAGATGGGAGCAATGATTTTGGAGGCTaGCTCTGGGACCTCCAGGTCAGGAGCTGTGGGACC +
Preference number: 3 (lower is better)
Translates to: HGLGDGSNDFGG*LWDLQVRSCGT
Trigger: GGTCCCACAGCTCCTGACCTGGAGGTCCCAGAGTCAGCCTCCAAAATCATTGCTCCCATCTCCCAGGCCATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR TCA 72 bp TCCATTCCTCCCCTCAGGTTCAGTCCCCACAAAGCATaGGTCCTGCTGGCAGAAGCAGGCACTTCCCTGGCC +
Preference number: 3 (lower is better)
Translates to: SIPPLRFSPHKA*VLLAEAGTSLA
Trigger: GGCCAGGGAAGTGCCTGCTTCTGCCAGCAGGACTCATGCTTTGTGGGGACTGAACCTGAGGGGAGGAATGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CCA 72 bp AACAGACGTCATCCAGGTCACGCGAGAGCAGAGGCTTaGCCTTCTCACCCATGTGACCTGAGCGGACTCAGG +
Preference number: 3 (lower is better)
Translates to: NRRHPGHARAEA*PSHPCDLSGLR
Trigger: CCTGAGTCCGCTCAGGTCACATGGGTGAGAAGGCCAAGCCTCTGCTCTCGCGTGACCTGGATGACGTCTGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CCA 72 bp GGGAGGGAGACCAGGGCAGACGTGGCATGCATGGCCTaGGAGATGGGAGCAATGATTTTGGAGGCTGACTCT +
Preference number: 3 (lower is better)
Translates to: GRETRADVACMA*EMGAMILEADS
Trigger: AGAGTCAGCCTCCAAAATCATTGCTCCCATCTCCCAGGCCATGCATGCCACGTCTGCCCTGGTCTCCCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CCA 72 bp ACACAAAGGGAGAGCTCTGGCGCACTCAGTGCTCTGTaGGTTCCGCAGGCTCTGGGTTTACAGCACCCTCAG +
Preference number: 3 (lower is better)
Translates to: TQRESSGALSAL*VPQALGLQHPQ
Trigger: CTGAGGGTGCTGTAAACCCAGAGCCTGCGGAACCCACAGAGCACTGAGTGCGCCAGAGCTCTCCCTTTGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
3UTR CCA 72 bp GGTGGCGACGGTGATGACAGGGATGGAGAGCTATGCTaGTTTATGCACTGGGCCACAGCAAAGCCTGGCACC +
Preference number: 3 (lower is better)
Translates to: GGDGDDRDGELC*FMHWATAKPGT
Trigger: GGTGCCAGGCTTTGCTGTGGCCCAGTGCATAAACCAGCATAGCTCTCCATCCCTGTCATCACCGTCGCCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR CAA 90 bp TGCACGTCAGAGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCGCAGCTGGGCCCCAGTaGGGCATCCACTTGCATCTT +
Preference number: 3 (lower is better)
Translates to: CTSEATEKANAILRMQPAAAGPQ*GIHLHL
Trigger: AAGATGCAAGTGGATGCCCAACTGGGGCCCAGCTGC...GGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCTCTGACGTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp ATAGAGGGCGCTCACCACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGGGGTCCACAGAGCTCTaGTTCCCAGTGGCCATCACT +
Preference number: 3 (lower is better)
Translates to: IEGAHHHTESDLWEVSHLGSTEL*FPVAIT
Trigger: AGTGATGGCCACTGGGAACAAGAGCTCTGTGGACCC...CAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGTGGTGAGCGCCCTCTAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp AGACTTCAACAGGGAGGAGGCAGCACTGCATGTTGCCATGGTGACGGTCAAAGCCAGGGCCACGGAGAATaGTGGGTGCTCCCAGTGTGT +
Preference number: 3 (lower is better)
Translates to: RLQQGGGSTACCHGDGQSQGHGE*WVLPVC
Trigger: ACACACTGGGAGCACCCACAATTCTCCGTGGCCCTG...GCTTTGACCGTCACCATGGCAACATGCAGTGCTGCCTCCTCCCTGTTGAAGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp GCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCAACAGGGCCACGGAGAATaGTGGGTGCTCCCAGTGTGT +
Preference number: 3 (lower is better)
Translates to: ATEKANAILRMQPAYSCQQGHGE*WVLPVC
Trigger: ACACACTGGGAGCACCCACAATTCTCCGTGGCCCTG...TTGGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp AAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGGATGCTTATCTAGGTTaGCTTCTCCACAGGTTTCTA +
Preference number: 3 (lower is better)
Translates to: KELPKGRCQWVLPPAAVRDAYLG*LLHRFL
Trigger: TAGAAACCTGTGGAGAAGCAAACCTAGATAAGCATC...CCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp AGACTTCAACAGGGAGGAGGCAGCACTGCATGTTGCCATGGTGACGGTCAAAGCTCTGCCCTGGGGCAGTaGAAGAAGGGAGGGAGACCA +
Preference number: 3 (lower is better)
Translates to: RLQQGGGSTACCHGDGQSSALGQ*KKGGRP
Trigger: TGGTCTCCCTCCCTTCTTCAACTGCCCCAGGGCAGA...GCTTTGACCGTCACCATGGCAACATGCAGTGCTGCCTCCTCCCTGTTGAAGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp CCAGGACTTCTGTTGTCGGCTGGATTGGGAGGTCCAGAAGGGCGGCTATCCTCTCTGGCCGATGAGTTCTaGCTGGGCTTGGAGTTGACA +
Preference number: 3 (lower is better)
Translates to: PGLLLSAGLGGPEGRLSSLADEF*LGLELT
Trigger: TGTCAACTCCAAGCCCAGCAAGAACTCATCGGCCAG...AGAGGATAGCCGCCCTTCTGGACCTCCCAATCCAGCCGACAACAGAAGTCCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR GCA 72 bp ACACAGAGCGTTGCACTGTCGGGTCACTGCTGCCTCTaGGGCACTGCTCATAGAAACGGAAAGGCAGGTGCT +
Preference number: 3 (lower is better)
Translates to: TQSVALSGHCCL*GTAHRNGKAGA
Trigger: AGCACCTGCCTTTCCGTTTCTATGAGCAGTGCCGCAGAGGCAGCAGTGACCCGACAGTGCAACGCTCTGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR GCA 72 bp CTGGGCCACAGCAAAGCCTGGCACCTTGTCTACGGATaGAAACACAGAGCGTTGCACTGTCGGGTCACTGCT +
Preference number: 3 (lower is better)
Translates to: LGHSKAWHLVYG*KHRALHCRVTA
Trigger: AGCAGTGACCCGACAGTGCAACGCTCTGTGTTTGCATCCGTAGACAAGGTGCCAGGCTTTGCTGTGGCCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR CAA 90 bp GGTGAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACACTTTGCCAGGGCCTTaGGAGTGGCTGCCTCTAAGG +
Preference number: 3 (lower is better)
Translates to: GETVSFFRVLRSCCFLQDTLPGP*EWLPLR
Trigger: CCTTAGAGGCAGCCACTCCAAAGGCCCTGGCAAAGT...GTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp GCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCAAGGGTCCACAGAGCTCTaGTTCCCAGTGGCCATCACT +
Preference number: 3 (lower is better)
Translates to: ATEKANAILRMQPAYSCQGSTEL*FPVAIT
Trigger: AGTGATGGCCACTGGGAACAAGAGCTCTGTGGACCC...TTGGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR TCA 72 bp TCACGCGAGAGCAGAGGCTTGGCCTTCTCACCCATGTaGCCTGAGCGGACTCAGGTCTCTCTCATCTTGTTC +
Preference number: 3 (lower is better)
Translates to: SRESRGLAFSPM*PERTQVSLILF
Trigger: GAACAAGATGAGAGAGACCTGAGTCCGCTCAGGTCACATGGGTGAGAAGGCCAAGCCTCTGCTCTCGCGTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR TCA 72 bp GGCAGCACTGCATGTTGCCATGGTGACGGTCAAAGCTaGGGTGATGGGTTAGAGGCCAGCTCTGCTAGTCTG +
Preference number: 3 (lower is better)
Translates to: GSTACCHGDGQS*GDGLEASSASL
Trigger: CAGACTAGCAGAGCTGGCCTCTAACCCATCACCTCAGCTTTGACCGTCACCATGGCAACATGCAGTGCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR TCA 72 bp TTGGCCAGGCGCTGCTTGGCAATAATGCAGCGGATATaGTCCGAGAACACGAAGGTGGCCTGCAGGATAGGG +
Preference number: 3 (lower is better)
Translates to: LARRCLAIMQRI*SENTKVACRIG
Trigger: CCCTATCCTGCAGGCCACCTTCGTGTTCTCGGATCATATCCGCTGCATTATTGCCAAGCAGCGCCTGGCCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR GCA 72 bp ACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTaGCTAAGACTTCAACAGGGAGGAGGCAGCACTGCA +
Preference number: 3 (lower is better)
Translates to: TTLSLTCGKCPT*LRLQQGGGSTA
Trigger: TGCAGTGCTGCCTCCTCCCTGTTGAAGTCTTAGGCAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR GCA 72 bp CGGATGCAAACACAGAGCGTTGCACTGTCGGGTCACTaGTGCCTCTGCGGCACTGCTCATAGAAACGGAAAG +
Preference number: 3 (lower is better)
Translates to: RMQTQSVALSGH*CLCGTAHRNGK
Trigger: CTTTCCGTTTCTATGAGCAGTGCCGCAGAGGCAGCAGTGACCCGACAGTGCAACGCTCTGTGTTTGCATCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR GCA 72 bp AATGGTGGCGACGGTGATGACAGGGATGGAGAGCTATaGTGGTTTATGCACTGGGCCACAGCAAAGCCTGGC +
Preference number: 3 (lower is better)
Translates to: NGGDGDDRDGEL*WFMHWATAKPG
Trigger: GCCAGGCTTTGCTGTGGCCCAGTGCATAAACCAGCATAGCTCTCCATCCCTGTCATCACCGTCGCCACCATT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR CAA 90 bp CTCTGGGACCTCCAGGTCAGGAGCTGTGGGACCTACTGGACCTTAGATCCCTCAACAGGAAGTCCACATTaGCTCACTTGGAGGTATGCC +
Preference number: 3 (lower is better)
Translates to: LWDLQVRSCGTYWTLDPSTGSPH*LTWRYA
Trigger: GGCATACCTCCAAGTGAGCAAATGTGGACTTCCTGT...TGAGGGATCTAAGGTCCAGTAGGTCCCACAGCTCCTGACCTGGAGGTCCCAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR TCA 72 bp CGAGAGCAGAGGCTTGGCCTTCTCACCCATGTGACCTaGGCGGACTCAGGTCTCTCTCATCTTGTTCAGAAG +
Preference number: 3 (lower is better)
Translates to: REQRLGLLTHVT*ADSGLSHLVQK
Trigger: CTTCTGAACAAGATGAGAGAGACCTGAGTCCGCTCAGGTCACATGGGTGAGAAGGCCAAGCCTCTGCTCTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR TCA 72 bp CTGTCACCTGCATGTCCTGTAGAAGGCCAGCAAACTTaGCCACTCCCCAGCCAAGTCTGGATACGTCAGGCT +
Preference number: 3 (lower is better)
Translates to: LSPACPVEGQQT*PLPSQVWIRQA
Trigger: AGCCTGACGTATCCAGACTTGGCTGGGGAGTGGTCAAGTTTGCTGGCCTTCTACAGGACATGCAGGTGACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR GCA 72 bp GGACCCCATCCCTCCATCAGCAATGGGCCACAGTTCTaGTCACAGGAAGTCCACATTTGCTCACTTGGAGGT +
Preference number: 3 (lower is better)
Translates to: GPHPSISNGPQF*SQEVHICSLGG
Trigger: ACCTCCAAGTGAGCAAATGTGGACTTCCTGTGAGCAGAACTGTGGCCCATTGCTGATGGAGGGATGGGGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR GCA 72 bp GAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTaGTTCCTCCAGGACCCCATCCCTCCATCAGCAATG +
Preference number: 3 (lower is better)
Translates to: ETVSFFRVLRSC*FLQDPIPPSAM
Trigger: CATTGCTGATGGAGGGATGGGGTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR GCA 72 bp GCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCAATaGAAGTGTTTGGTGGGTAGAGTAGCAGGTGAAGCC +
Preference number: 3 (lower is better)
Translates to: AILRMQPAYSCQ*KCLVGRVAGEA
Trigger: GGCTTCACCTGCTACTCTACCCACCAAACACTTGCATTGGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR GCA 72 bp TTCAGGGCACGGCTGTCATCCTCCACTCCTGTCACCTaGATGTCCTGTAGAAGGCCAGCAAACTTGACCACT +
Preference number: 3 (lower is better)
Translates to: FRARLSSSTPVT*MSCRRPANLTT
Trigger: AGTGGTCAAGTTTGCTGGCCTTCTACAGGACATGCAGGTGACAGGAGTGGAGGATGACAGCCGTGCCCTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR CCA 72 bp AGCCTGCTCAGCGAGAGGTCAGAGCAAATGAGTGCTTaGTGGTTGTCTTGTAGGGAGAGGTATGAGGGGCAG +
Preference number: 3 (lower is better)
Translates to: SLLSERSEQMSA*WLSCRERYEGQ
Trigger: CTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTGCTCTGACCTCTCGCTGAGCAGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CCA 72 bp GAGTCCAAATCCCAGGACTTCTGTTGTCGGCTGGATTaGGAGGTCCAGAAGGGCGGCTATCCTCTGCATCTT +
Preference number: 3 (lower is better)
Translates to: ESKSQDFCCRLD*EVQKGGYPLHL
Trigger: AAGATGCAGAGGATAGCCGCCCTTCTGGACCTCCCAATCCAGCCGACAACAGAAGTCCTGGGATTTGGACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR CAA 90 bp AGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCCAGTTGGGCATCCACTaGCATCTTGGGAAGCAGATT +
Preference number: 3 (lower is better)
Translates to: RPQRKPMPSLGCSQPTPAQLGIH*HLGKQI
Trigger: AATCTGCTTCCCAAGATGCAAGTGGATGCCCAACTG...GGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp AGACTTCAACAGGGAGGAGGCAGCACTGCATGTTGCCATGGTGACGGTCAAAGCTTGCCCTTTCAGGGTTaGCTGAACACCATGGGCACA +
Preference number: 3 (lower is better)
Translates to: RLQQGGGSTACCHGDGQSLPFQG*LNTMGT
Trigger: TGTGCCCATGGTGTTCAGCAAACCCTGAAAGGGCAA...GCTTTGACCGTCACCATGGCAACATGCAGTGCTGCCTCCTCCCTGTTGAAGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp GACAGGGATGGAGAGCTATGCTGGTTTATGCACTGGGCCACAGCAAAGCCTGGCACCATACCACCATCCTaGGTGATGACTGTGCATGCA +
Preference number: 3 (lower is better)
Translates to: DRDGELCWFMHWATAKPGTIPPS*VMTVHA
Trigger: TGCATGCACAGTCATCACCAAGGATGGTGGTATGGT...GCCAGGCTTTGCTGTGGCCCAGTGCATAAACCAGCATAGCTCTCCATCCCTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR TCA 72 bp AGGATCCCAGCCTGCTCAGCGAGAGGTCAGAGCAAATaGGTGCTTGGTGGTTGTCTTGTAGGGAGAGGTATG +
Preference number: 3 (lower is better)
Translates to: RIPACSARGQSK*VLGGCLVGRGM
Trigger: CATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTGCTCTGACCTCTCGCTGAGCAGGCTGGGATCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR GCA 72 bp GCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTaGCAATGCAAGTGTTTGGTGGGTAGAGTAGCAGGT +
Preference number: 3 (lower is better)
Translates to: ANAILRMQPAYS*QCKCLVGRVAG
Trigger: ACCTGCTACTCTACCCACCAAACACTTGCATTGGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR GCA 72 bp CAGAGGCCACAGAGAAAGCCAATGCCATCCTTAGGATaGAGCCAGCCTACTCCTGCCAATGCAAGTGTTTGG +
Preference number: 3 (lower is better)
Translates to: QRPQRKPMPSLG*SQPTPANASVW
Trigger: CCAAACACTTGCATTGGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR GCA 72 bp ACGGTGATGACAGGGATGGAGAGCTATGCTGGTTTATaGACTGGGCCACAGCAAAGCCTGGCACCTTGTCTA +
Preference number: 3 (lower is better)
Translates to: TVMTGMESYAGL*TGPQQSLAPCL
Trigger: TAGACAAGGTGCCAGGCTTTGCTGTGGCCCAGTGCATAAACCAGCATAGCTCTCCATCCCTGTCATCACCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR CCA 72 bp AAGAGAGTCATTCATTCCCCCACCCGCCCCAGCCGGTaGCACCTTCTGCATATGGATACACTTAGACCATGT +
Preference number: 3 (lower is better)
Translates to: KRVIHSPTRPSR*HLLHMDTLRPC
Trigger: ACATGGTCTAAGTGTATCCATATGCAGAAGGTGCCACCGGCTGGGGCGGGTGGGGGAATGAATGACTCTCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
3UTR CCA 72 bp ACAGTTCTGCTCACAGGAAGTCCACATTTGCTCACTTaGAGGTATGCCCTAGGCTCCTGGTTGCAGGAACCC +
Preference number: 3 (lower is better)
Translates to: TVLLTGSPHLLT*RYALGSWLQEP
Trigger: GGGTTCCTGCAACCAGGAGCCTAGGGCATACCTCCAAGTGAGCAAATGTGGACTTCCTGTGAGCAGAACTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CCA 72 bp GATGACAGGGATGGAGAGCTATGCTGGTTTATGCACTaGGCCACAGCAAAGCCTGGCACCTTGTCTACGGAT +
Preference number: 3 (lower is better)
Translates to: DDRDGELCWFMH*ATAKPGTLSTD
Trigger: ATCCGTAGACAAGGTGCCAGGCTTTGCTGTGGCCCAGTGCATAAACCAGCATAGCTCTCCATCCCTGTCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR CAA 90 bp AGACTTCAACAGGGAGGAGGCAGCACTGCATGTTGCCATGGTGACGGTCAAAGCCAGTTGGGCATCCACTaGCATCTTGGGAAGCAGATT +
Preference number: 3 (lower is better)
Translates to: RLQQGGGSTACCHGDGQSQLGIH*HLGKQI
Trigger: AATCTGCTTCCCAAGATGCAAGTGGATGCCCAACTG...GCTTTGACCGTCACCATGGCAACATGCAGTGCTGCCTCCTCCCTGTTGAAGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp TGGCTGTGGGGTCCACAGAGCTCTTGTTCCCAGTGGCCATCACTTTCCTCTCTTGGTGGGATTCTGCTTTaGGTCACCTGTTTTGCAGCT +
Preference number: 3 (lower is better)
Translates to: WLWGPQSSCSQWPSLSSLGGILL*VTCFAA
Trigger: AGCTGCAAAACAGGTGACCAAAAGCAGAATCCCACC...AAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTGGACCCCACAGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp TTTCATTCCCAATCACTGACTGGTCTAGGTGAGGCTGAGGCTGTTCTGGAGTCGTTGGCCAGGCGCTGCTaGGCAATAATGCAGCGGATA +
Preference number: 3 (lower is better)
Translates to: FHSQSLTGLGEAEAVLESLARRC*AIMQRI
Trigger: TATCCGCTGCATTATTGCCAAGCAGCGCCTGGCCAA...CGACTCCAGAACAGCCTCAGCCTCACCTAGACCAGTCAGTGATTGGGAATGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR GCA 72 bp TCTTTTAGGGAAGGGCAGGAGGACTGGATACATTGTTaGAGAAGAGGGAAGAAGCCGAAGGCCTGTGGGTAC +
Preference number: 3 (lower is better)
Translates to: SFREGQEDWIHC*RRGKKPKACGY
Trigger: GTACCCACAGGCCTTCGGCTTCTTCCCTCTTCTGCAACAATGTATCCAGTCCTCCTGCCCTTCCCTAAAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
3UTR CCA 72 bp CTGCTCAGCGAGAGGTCAGAGCAAATGAGTGCTTGGTaGTTGTCTTGTAGGGAGAGGTATGAGGGGCAGTTT +
Preference number: 3 (lower is better)
Translates to: LLSERSEQMSAW*LSCRERYEGQF
Trigger: AAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTGCTCTGACCTCTCGCTGAGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CCA 72 bp GATGGTAATGTATGGGGTACCCTTGTGGCTCGCCTTTaGTGGGTACTGAAACTGGGTGAGGCCAGATCTGTA +
Preference number: 3 (lower is better)
Translates to: DGNVWGTLVARL*WVLKLGEARSV
Trigger: TACAGATCTGGCCTCACCCAGTTTCAGTACCCACCAAAGGCGAGCCACAAGGGTACCCCATACATTACCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp GGTGAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACCTCCGAGCCTTATGGTaGAGGGCTTTTTCTTTTTGC +
Preference number: 3 (lower is better)
Translates to: GETVSFFRVLRSCCFLQDLRALW*RAFSFC
Trigger: GCAAAAAGAAAAAGCCCTCAACCATAAGGCTCGGAG...GTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTCACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp TGGCTGTGGGGTCCACAGAGCTCTTGTTCCCAGTGGCCATCACTTTCCTCTCTTGCTAATGGGTCTTTCTaGGATGAAGAGAGAAGGGAG +
Preference number: 3 (lower is better)
Translates to: WLWGPQSSCSQWPSLSSLANGSF*DEERRE
Trigger: CTCCCTTCTCTCTTCATCCAAGAAAGACCCATTAGC...AAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTGGACCCCACAGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp ATAGAGGGCGCTCACCACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGTGTGCCTTAAATCCTTaGATTTCTGTCACGGACACT +
Preference number: 3 (lower is better)
Translates to: IEGAHHHTESDLWEVSHLCALNP*ISVTDT
Trigger: AGTGTCCGTGACAGAAATCAAAGGATTTAAGGCACA...CAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGTGGTGAGCGCCCTCTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGGCAGCTGGGCCCCAGTaGGGCATCCACTTGCATCTT +
Preference number: 3 (lower is better)
Translates to: TQPSVLENILSLTACPLEAAGPQ*GIHLHL
Trigger: AAGATGCAAGTGGATGCCCAACTGGGGCCCAGCTGC...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp TGGCACCTTGTCTACGGATGCAAACACAGAGCGTTGCACTGTCGGGTCACTGCTTTGCTGGGCTTGGAGTaGACATCCATTTCATTCCCA +
Preference number: 3 (lower is better)
Translates to: WHLVYGCKHRALHCRVTALLGLE*TSISFP
Trigger: TGGGAATGAAATGGATGTCAACTCCAAGCCCAGCAA...AGCAGTGACCCGACAGTGCAACGCTCTGTGTTTGCATCCGTAGACAAGGTGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR CAA 90 bp CCCTCTGGGAGCAACCTTAAAGCCAGCTGTGGGAACAGGCTTATTGTTGGTGAAGGTGGGATTCTGCTTTaGGTCACCTGTTTTGCAGCT +
Preference number: 3 (lower is better)
Translates to: PSGSNLKASCGNRLIVGEGGILL*VTCFAA
Trigger: AGCTGCAAAACAGGTGACCAAAAGCAGAATCCCACC...TTCACCAACAATAAGCCTGTTCCCACAGCTGGCTTTAAGGTTGCTCCCAGAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp ATGACAGGGATGGAGAGCTATGCTGGTTTATGCACTGGGCCACAGCAAAGCCTGGAGTTCTTGCTGGGCTaGGAGTTGACATCCATTTCA +
Preference number: 3 (lower is better)
Translates to: MTGMESYAGLCTGPQQSLEFLLG*ELTSIS
Trigger: TGAAATGGATGTCAACTCCAAGCCCAGCAAGAACTC...CAGGCTTTGCTGTGGCCCAGTGCATAAACCAGCATAGCTCTCCATCCCTGTCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
3UTR-3UTR CAA 90 bp CAAATGAGTGCTTGGTGGTTGTCTTGTAGGGAGAGGTATGAGGGGCAGTTTTCACTGGCCGATGAGTTCTaGCTGGGCTTGGAGTTGACA +
Preference number: 3 (lower is better)
Translates to: QMSAWWLSCRERYEGQFSLADEF*LGLELT
Trigger: TGTCAACTCCAAGCCCAGCAAGAACTCATCGGCCAG...TGAAAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
3UTR TCA 72 bp TTAAGAAGCAGCTCTCTCAGCCCCTGGACTTTCCACTaGATCTCTCTTTTAGGGAAGGGCAGGAGGACTGGA +
Preference number: 3 (lower is better)
Translates to: LRSSSLSPWTFH*ISLLGKGRRTG
Trigger: TCCAGTCCTCCTGCCCTTCCCTAAAAGAGAGATTCAGTGGAAAGTCCAGGGGCTGAGAGAGCTGCTTCTTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
3UTR GCA 72 bp CCTGTTTTGCAGCTGGGCCCCAGTTGGGCATCCACTTaGATCTTGGGAAGCAGATTATATCTGAGGATGACT +
Preference number: 3 (lower is better)
Translates to: PVLQLGPSWAST*ILGSRLYLRMT
Trigger: AGTCATCCTCAGATATAATCTGCTTCCCAAGATGCAAGTGGATGCCCAACTGGGGCCCAGCTGCAAAACAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR GCA 72 bp GGTTCTTGCTGGTTAGGTCTGTCTGGAGAGCACAGTTaGCAAGTTAGCAGAGTACTCCTGAAGACTGGGTTG +
Preference number: 3 (lower is better)
Translates to: GSCWLGLSGEHS*QVSRVLLKTGL
Trigger: CAACCCAGTCTTCAGGAGTACTCTGCTAACTTGGCAACTGTGCTCTCCAGACAGACCTAACCAGCAAGAACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp GGTGAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACGATGCTTATCTAGGTTaGCTTCTCCACAGGTTTCTA +
Preference number: 3 (lower is better)
Translates to: GETVSFFRVLRSCCFLQDDAYLG*LLHRFL
Trigger: TAGAAACCTGTGGAGAAGCAAACCTAGATAAGCATC...GTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp CCCTCTGGGAGCAACCTTAAAGCCAGCTGTGGGAACAGGCTTATTGTTGGTGAACTCCGAGCCTTATGGTaGAGGGCTTTTTCTTTTTGC +
Preference number: 3 (lower is better)
Translates to: PSGSNLKASCGNRLIVGELRALW*RAFSFC
Trigger: GCAAAAAGAAAAAGCCCTCAACCATAAGGCTCGGAG...TTCACCAACAATAAGCCTGTTCCCACAGCTGGCTTTAAGGTTGCTCCCAGAGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp CTCTGGGACCTCCAGGTCAGGAGCTGTGGGACCTACTGGACCTTAGATCCCTCAAGAGAGTCACTTGAATaGTGTAACATTTATGCTGAC +
Preference number: 3 (lower is better)
Translates to: LWDLQVRSCGTYWTLDPSRESLE*CNIYAD
Trigger: GTCAGCATAAATGTTACACAATTCAAGTGACTCTCT...TGAGGGATCTAAGGTCCAGTAGGTCCCACAGCTCCTGACCTGGAGGTCCCAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp AGACTTCAACAGGGAGGAGGCAGCACTGCATGTTGCCATGGTGACGGTCAAAGCGGAACAGGCTTATTGTaGGTGAATTTTACACAGCAG +
Preference number: 3 (lower is better)
Translates to: RLQQGGGSTACCHGDGQSGTGLL*VNFTQQ
Trigger: CTGCTGTGTAAAATTCACCAACAATAAGCCTGTTCC...GCTTTGACCGTCACCATGGCAACATGCAGTGCTGCCTCCTCCCTGTTGAAGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp TTTCATTCCCAATCACTGACTGGTCTAGGTGAGGCTGAGGCTGTTCTGGAGTCGTTGCTGGGCTTGGAGTaGACATCCATTTCATTCCCA +
Preference number: 3 (lower is better)
Translates to: FHSQSLTGLGEAEAVLESLLGLE*TSISFP
Trigger: TGGGAATGAAATGGATGTCAACTCCAAGCCCAGCAA...CGACTCCAGAACAGCCTCAGCCTCACCTAGACCAGTCAGTGATTGGGAATGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115823.2
ENSMUST00000115828.9
3UTR TCA 72 bp AGCTCCTGGCCGATGAGTTCTTGCTGGGCTTGGAGTTaGCATCCATTTCATTCCCAATCACTGACTGGTCTA +
Preference number: 3 (lower is better)
Translates to: SSWPMSSCWAWS*HPFHSQSLTGL
Trigger: TAGACCAGTCAGTGATTGGGAATGAAATGGATGTCAACTCCAAGCCCAGCAAGAACTCATCGGCCAGGAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115823.2
ENSMUST00000115828.9
3UTR CCA 72 bp CCACTGAATCTCTCTTTTAGGGAAGGGCAGGAGGACTaGATACATTGTTGCAGAAGAGGGAAGAAGCCGAAG +
Preference number: 3 (lower is better)
Translates to: PLNLSFREGQED*IHCCRRGKKPK
Trigger: CTTCGGCTTCTTCCCTCTTCTGCAACAATGTATCCAGTCCTCCTGCCCTTCCCTAAAAGAGAGATTCAGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
3UTR-3UTR CAA 90 bp TTAGACCATGTCGAAGCAGGAAGGAGGCTGCTCTTCTTAAGAAGCAGCTCTCTCGGAGGACTGGATACATaGTTGCAGAAGAGGGAAGAA +
Preference number: 3 (lower is better)
Translates to: LDHVEAGRRLLFLRSSSLGGLDT*LQKREE
Trigger: TTCTTCCCTCTTCTGCAACAATGTATCCAGTCCTCC...GAGAGAGCTGCTTCTTAAGAAGAGCAGCCTCCTTCCTGCTTCGACATGGTCTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
3UTR-3UTR CAA 90 bp GGTGAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACGTTTTAGAAAACATCTaGTCTTTGACAGCATGCCCA +
Preference number: 3 (lower is better)
Translates to: GETVSFFRVLRSCCFLQDVLENI*SLTACP
Trigger: TGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAAC...GTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp CCCTCTGGGAGCAACCTTAAAGCCAGCTGTGGGAACAGGCTTATTGTTGGTGAAGATGCTTATCTAGGTTaGCTTCTCCACAGGTTTCTA +
Preference number: 3 (lower is better)
Translates to: PSGSNLKASCGNRLIVGEDAYLG*LLHRFL
Trigger: TAGAAACCTGTGGAGAAGCAAACCTAGATAAGCATC...TTCACCAACAATAAGCCTGTTCCCACAGCTGGCTTTAAGGTTGCTCCCAGAGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp CCCTCTGGGAGCAACCTTAAAGCCAGCTGTGGGAACAGGCTTATTGTTGGTGAATGTGCCTTAAATCCTTaGATTTCTGTCACGGACACT +
Preference number: 3 (lower is better)
Translates to: PSGSNLKASCGNRLIVGECALNP*ISVTDT
Trigger: AGTGTCCGTGACAGAAATCAAAGGATTTAAGGCACA...TTCACCAACAATAAGCCTGTTCCCACAGCTGGCTTTAAGGTTGCTCCCAGAGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGCTCCGAGCCTTATGGTaGAGGGCTTTTTCTTTTTGC +
Preference number: 3 (lower is better)
Translates to: TQPSVLENILSLTACPLELRALW*RAFSFC
Trigger: GCAAAAAGAAAAAGCCCTCAACCATAAGGCTCGGAG...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGGCTAATGGGTCTTTCTaGGATGAAGAGAGAAGGGAG +
Preference number: 3 (lower is better)
Translates to: TQPSVLENILSLTACPLEANGSF*DEERRE
Trigger: CTCCCTTCTCTCTTCATCCAAGAAAGACCCATTAGC...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR TCA 72 bp CAGGAACTGTATGCACTAGCTCCTAGTCACCTTACATaGAGGACGAAATCTCTCATCCTCAACTCTCAGCAC +
Preference number: 3 (lower is better)
Translates to: QELYALAPSHLT*RTKSLILNSQH
Trigger: GTGCTGAGAGTTGAGGATGAGAGATTTCGTCCTTCATGTAAGGTGACTAGGAGCTAGTGCATACAGTTCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
3UTR GCA 72 bp AGATCAGACTTGGTTTACCCATGCCTTATTTACAACTaGACGTCAGAGGCCACAGAGAAAGCCAATGCCATC +
Preference number: 3 (lower is better)
Translates to: RSDLVYPCLIYN*TSEATEKANAI
Trigger: GATGGCATTGGCTTTCTCTGTGGCCTCTGACGTGCAGTTGTAAATAAGGCATGGGTAAACCAAGTCTGATCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CCA 72 bp CTGTGCCTTAAATCCTTTGATTTCTGTCACGGACACTaGCTAATGGGTCTTTCTTGGATGAAGAGAGAAGGG +
Preference number: 3 (lower is better)
Translates to: LCLKSFDFCHGH*LMGLSWMKREG
Trigger: CCCTTCTCTCTTCATCCAAGAAAGACCCATTAGCCAGTGTCCGTGACAGAAATCAAAGGATTTAAGGCACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR-3UTR CAA 90 bp TCAAATTACAAGAAAGTTCTAGCTTCCATTCCTCCCCTCAGGTTCAGTCCCCACGTGGGAACAGGCTTATaGTTGGTGAATTTTACACAG +
Preference number: 3 (lower is better)
Translates to: SNYKKVLASIPPLRFSPHVGTGL*LVNFTQ
Trigger: CTGTGTAAAATTCACCAACAATAAGCCTGTTCCCAC...GTGGGGACTGAACCTGAGGGGAGGAATGGAAGCTAGAACTTTCTTGTAATTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp ACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATCAGGGGCAGGGCCCCTTCATGCGCCTGGCCTaGATGCGGCCCTTGGCCAGG +
Preference number: 4 (lower is better)
Translates to: TVPVGPAPCGCQDQGQGPFMRLA*MRPLAR
Trigger: CCTGGCCAAGGGCCGCATCCAGGCCAGGCGCATGAA...GGGGCCCTGCCCCTGATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp GGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATTGCGCCTGGCCTGGATaGGGCCCTTGGCCAGGCGCT +
Preference number: 4 (lower is better)
Translates to: GAAQRTVPVGPAPCGCQDCAWPG*GPWPGA
Trigger: AGCGCCTGGCCAAGGGCCGCATCCAGGCCAGGCGCA...ATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp ACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATCAGGGGCAGGGCCCCGAAGGCCAGCAAACTTaGCCACTCCCCAGCCAAGTC +
Preference number: 4 (lower is better)
Translates to: TVPVGPAPCGCQDQGQGPEGQQT*PLPSQV
Trigger: GACTTGGCTGGGGAGTGGTCAAGTTTGCTGGCCTTC...GGGGCCCTGCCCCTGATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp ACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATCAGGGGCAGGGCCCCAGAGCTCCTGGCCGATaGGTTCTTGCTGGGCTTGGA +
Preference number: 4 (lower is better)
Translates to: TVPVGPAPCGCQDQGQGPRAPGR*VLAGLG
Trigger: TCCAAGCCCAGCAAGAACTCATCGGCCAGGAGCTCT...GGGGCCCTGCCCCTGATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp CCTCAGCTGGGGTCTCCGTATCTGCTGCAGGCAGTGTGGGGAGCTGGGAGATGCTGCGCCTGGCCTGGATaGGGCCCTTGGCCAGGCGCT +
Preference number: 4 (lower is better)
Translates to: PQLGSPYLLQAVWGAGRCCAWPG*GPWPGA
Trigger: AGCGCCTGGCCAAGGGCCGCATCCAGGCCAGGCGCA...GCATCTCCCAGCTCCCCACACTGCCTGCAGCAGATACGGAGACCCCAGCTGAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR GCA 90 bp GGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATGGCTGGTGCTTCCACTaGCACCAGGGCTCCCACTGG +
Preference number: 4 (lower is better)
Translates to: GAAQRTVPVGPAPCGCQDGWCFH*HQGSHW
Trigger: CCAGTGGGAGCCCTGGTGGCAGTGGAAGCACCAGCC...ATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp ACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATCAGGGGCAGGGCCCCCTCCTCCCGAGTCAGTaGCAACTGGGTCTCAGGTTC +
Preference number: 4 (lower is better)
Translates to: TVPVGPAPCGCQDQGQGPLLPSQ*QLGLRF
Trigger: GAACCTGAGACCCAGTTGCCACTGACTCGGGAGGAG...GGGGCCCTGCCCCTGATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp AAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGCCTGGATGCGGCCCTTaGCCAGGCGCTGCTTGGCAA +
Preference number: 4 (lower is better)
Translates to: KELPKGRCQWVLPPAAVRPGCGP*PGAAWQ
Trigger: TTGCCAAGCAGCGCCTGGCCAAGGGCCGCATCCAGG...CCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp CAGTGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCGGGACCCAGTGGCCGCCGTaGCTGTCGGCCTCCGACAGG +
Preference number: 4 (lower is better)
Translates to: QCVSSVLVEQGDGGLLGGTQWPP*LSASDR
Trigger: CCTGTCGGAGGCCGACAGTCACGGCGGCCACTGGGT...CCCGCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACACTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR GCA 90 bp ACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATCAGGGGCAGGGCCCCCTGGTCAGTACTTGCTaGTTCAGGAGCAGGCAGCTC +
Preference number: 4 (lower is better)
Translates to: TVPVGPAPCGCQDQGQGPLVSTC*FRSRQL
Trigger: GAGCTGCCTGCTCCTGAAGCAGCAAGTACTGACCAG...GGGGCCCTGCCCCTGATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp GGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATCAGTGGAGTGCCCGTTaGGGGCAGGAGGATGGAAGC +
Preference number: 4 (lower is better)
Translates to: GAAQRTVPVGPAPCGCQDQWSAR*GQEDGS
Trigger: GCTTCCATCCTCCTGCCCCCAACGGGCACTCCACTG...ATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp ACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATCAGGGGCAGGGCCCCACAGCCAGGAACCGCTaGACCATACCACCATCCTTG +
Preference number: 4 (lower is better)
Translates to: TVPVGPAPCGCQDQGQGPTARNR*TIPPSL
Trigger: CAAGGATGGTGGTATGGTCCAGCGGTTCCTGGCTGT...GGGGCCCTGCCCCTGATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp AAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGGCATCTTCATGCGCCTaGCCTGGATGCGGCCCTTGG +
Preference number: 4 (lower is better)
Translates to: KELPKGRCQWVLPPAAVRASSCA*PGCGPW
Trigger: CCAAGGGCCGCATCCAGGCCAGGCGCATGAAGATGC...CCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp CATGCGCCTGGCCTGGATGCGGCCCTTGGCCAGGCGCTGCTTGGCAATAATGCAGTTCTGCTCCTGCACTaGGGTCCCAGCAGCGGCCAC +
Preference number: 4 (lower is better)
Translates to: HAPGLDAALGQALLGNNAVLLLH*GPSSGH
Trigger: GTGGCCGCTGCTGGGACCTCAGTGCAGGAGCAGAAC...TGCATTATTGCCAAGCAGCGCCTGGCCAAGGGCCGCATCCAGGCCAGGCGCATG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR TCA 90 bp GGTGGGCTGCTGGGCGGGAAGGAGGCTAGGGGACAGGTGCATTGTCTCCCCCTCCCCTCGCAGCTGCAGTaGCAGGGAACGCAGCATGAA +
Preference number: 4 (lower is better)
Translates to: GGLLGGKEARGQVHCLPLPSQLQ*QGTQHE
Trigger: TTCATGCTGCGTTCCCTGTCACTGCAGCTGCGAGGG...GAGGGGGAGACAATGCACCTGTCCCCTAGCCTCCTTCCCGCCCAGCAGCCCACC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR TCA 90 bp CAGTGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCGGGCGGCCTCCGACAGGCTaGACACACGCCGGCGTCCTT +
Preference number: 4 (lower is better)
Translates to: QCVSSVLVEQGDGGLLGGRPPTG*THAGVL
Trigger: AAGGACGCCGGCGTGTGTTCAGCCTGTCGGAGGCCG...CCCGCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACACTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR GCA 90 bp AAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGGTGGTGTTCTGCTCCTaGACTGAGGTCCCAGCAGCG +
Preference number: 4 (lower is better)
Translates to: KELPKGRCQWVLPPAAVRVVFCS*TEVPAA
Trigger: CGCTGCTGGGACCTCAGTGCAGGAGCAGAACACCAC...CCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp GGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATTGGGGTCTCCGTATCTaGTGCAGGCAGTGTGGGGAG +
Preference number: 4 (lower is better)
Translates to: GAAQRTVPVGPAPCGCQDWGLRI*CRQCGE
Trigger: CTCCCCACACTGCCTGCAGCAGATACGGAGACCCCA...ATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp ACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATCAGGGGCAGGGCCCCTCTTCTCCTCGTCTGTaGTGTTCTGCTCCTGCACTG +
Preference number: 4 (lower is better)
Translates to: TVPVGPAPCGCQDQGQGPSSPRL*CSAPAL
Trigger: CAGTGCAGGAGCAGAACACCACAGACGAGGAGAAGA...GGGGCCCTGCCCCTGATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp GGTGGGCTGCTGGGCGGGAAGGAGGCTAGGGGACAGGTGCATTGTCTCCCCCTCGTCAATGCCAGTCAGTaGAGTGCCCGTTGGGGGCAG +
Preference number: 4 (lower is better)
Translates to: GGLLGGKEARGQVHCLPLVNASQ*SARWGQ
Trigger: CTGCCCCCAACGGGCACTCCACTGACTGGCATTGAC...GAGGGGGAGACAATGCACCTGTCCCCTAGCCTCCTTCCCGCCCAGCAGCCCACC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000115823.2
ENSMUST00000115828.9
CDS-3UTR CCA 90 bp ACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATCAGGGGCAGGGCCCCCTCCACATCACCACATaGCAGCCGCTTCACAAAGTC +
Preference number: 4 (lower is better)
Translates to: TVPVGPAPCGCQDQGQGPLHITT*QPLHKV
Trigger: GACTTTGTGAAGCGGCTGCCATGTGGTGATGTGGAG...GGGGCCCTGCCCCTGATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp ACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATCAGGGGCAGGGCCCCATCCTGCCATCTGGCTaGGCAGCATTGTTCATGATC +
Preference number: 4 (lower is better)
Translates to: TVPVGPAPCGCQDQGQGPILPSG*AALFMI
Trigger: GATCATGAACAATGCTGCTCAGCCAGATGGCAGGAT...GGGGCCCTGCCCCTGATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp AAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGGAAGGCCAGCAAACTTaGCCACTCCCCAGCCAAGTC +
Preference number: 4 (lower is better)
Translates to: KELPKGRCQWVLPPAAVREGQQT*PLPSQV
Trigger: GACTTGGCTGGGGAGTGGTCAAGTTTGCTGGCCTTC...CCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp GATGGTGGGCTGCTGGGCGGGAAGGAGGCTAGGGGACAGGTGCATTGTCTCCCCGTGGTGTTCTGCTCCTaGACTGAGGTCCCAGCAGCG +
Preference number: 4 (lower is better)
Translates to: DGGLLGGKEARGQVHCLPVVFCS*TEVPAA
Trigger: CGCTGCTGGGACCTCAGTGCAGGAGCAGAACACCAC...GGGGAGACAATGCACCTGTCCCCTAGCCTCCTTCCCGCCCAGCAGCCCACCATC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115823.2
ENSMUST00000115828.9
CDS-3UTR CCA 90 bp GGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATCTCCTCCCGAGTCAGTaGCAACTGGGTCTCAGGTTC +
Preference number: 4 (lower is better)
Translates to: GAAQRTVPVGPAPCGCQDLLPSQ*QLGLRF
Trigger: GAACCTGAGACCCAGTTGCCACTGACTCGGGAGGAG...ATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp ACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATCAGGGGCAGGGCCCCGATGGAGAGCTATGCTaGTTTATGCACTGGGCCACA +
Preference number: 4 (lower is better)
Translates to: TVPVGPAPCGCQDQGQGPDGELC*FMHWAT
Trigger: TGTGGCCCAGTGCATAAACCAGCATAGCTCTCCATC...GGGGCCCTGCCCCTGATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp CCTCAGCTGGGGTCTCCGTATCTGCTGCAGGCAGTGTGGGGAGCTGGGAGATGCCACCAGGGCTCCCACTaGCAAATGGTGGCGACGGTG +
Preference number: 4 (lower is better)
Translates to: PQLGSPYLLQAVWGAGRCHQGSH*QMVATV
Trigger: CACCGTCGCCACCATTTGCCAGTGGGAGCCCTGGTG...GCATCTCCCAGCTCCCCACACTGCCTGCAGCAGATACGGAGACCCCAGCTGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR GCA 90 bp GTCACTGCTGCCTCTGCGGCACTGCTCATAGAAACGGAAAGGCAGGTGCTGGGATGTTGCGGGAGGACTTaGTGTGGCCCCCGCCCACCC +
Preference number: 4 (lower is better)
Translates to: VTAASAALLIETERQVLGCCGRT*CGPRPP
Trigger: GGGTGGGCGGGGGCCACAGCAAGTCCTCCCGCAACA...TCCCAGCACCTGCCTTTCCGTTTCTATGAGCAGTGCCGCAGAGGCAGCAGTGAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR GCA 90 bp GGCTGGTGCTTCCACTGCCACCAGGGCTCCCACTGGCAAATGGTGGCGACGGTGTGCAGGTGGTCCAAGTaGTCAGCCACCAGGTCACTC +
Preference number: 4 (lower is better)
Translates to: GWCFHCHQGSHWQMVATVCRWSK*SATRSL
Trigger: GAGTGACCTGGTGGCTGAGCACTTGGACCACCTGCA...CACCGTCGCCACCATTTGCCAGTGGGAGCCCTGGTGGCAGTGGAAGCACCAGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR GCA 90 bp CATGCGCCTGGCCTGGATGCGGCCCTTGGCCAGGCGCTGCTTGGCAATAATGCAGTGGTGTTCTGCTCCTaGACTGAGGTCCCAGCAGCG +
Preference number: 4 (lower is better)
Translates to: HAPGLDAALGQALLGNNAVVFCS*TEVPAA
Trigger: CGCTGCTGGGACCTCAGTGCAGGAGCAGAACACCAC...TGCATTATTGCCAAGCAGCGCCTGGCCAAGGGCCGCATCCAGGCCAGGCGCATG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR GCA 90 bp AGCACCCTCAGCTGGGGTCTCCGTATCTGCTGCAGGCAGTGTGGGGAGCTGGGAAGGGCGGCTATCCTCTaGATCTTCATGCGCCTGGCC +
Preference number: 4 (lower is better)
Translates to: STLSWGLRICCRQCGELGRAAIL*IFMRLA
Trigger: GGCCAGGCGCATGAAGATGCAGAGGATAGCCGCCCT...TCCCAGCTCCCCACACTGCCTGCAGCAGATACGGAGACCCCAGCTGAGGGTGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR GCA 90 bp TGTGCACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGGGCTGGTGCTTCCACTaGCACCAGGGCTCCCACTGG +
Preference number: 4 (lower is better)
Translates to: CAHWEGRQRSCPKDGASGGWCFH*HQGSHW
Trigger: CCAGTGGGAGCCCTGGTGGCAGTGGAAGCACCAGCC...CCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGTGCACA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp AGGGCCCCAGACCCCTCTGAGGTGGCCAATGCCATCGTCTCTACACAGGAGGCCGGTCTCCGTATCTGCTaGAGGCAGTGTGGGGAGCTG +
Preference number: 4 (lower is better)
Translates to: RAPDPSEVANAIVSTQEAGLRIC*RQCGEL
Trigger: CAGCTCCCCACACTGCCTGCAGCAGATACGGAGACC...GGCCTCCTGTGTAGAGACGATGGCATTGGCCACCTCAGAGGGGTCTGGGGCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp AAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGAGGTGGTCCAAGGAGTaGATGTTGCGGGAGGACTTG +
Preference number: 4 (lower is better)
Translates to: KELPKGRCQWVLPPAAVRRWSKE*MLREDL
Trigger: CAAGTCCTCCCGCAACATCCACTCCTTGGACCACCT...CCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp ACAAAGGGAGAGCTCTGGCGCACTCAGTGCTCTGTGGGTTCCGCAGGCTCTGGGCAGTGGAGTGCCCGTTaGGGGCAGGAGGATGGAAGC +
Preference number: 4 (lower is better)
Translates to: TKGELWRTQCSVGSAGSGQWSAR*GQEDGS
Trigger: GCTTCCATCCTCCTGCCCCCAACGGGCACTCCACTG...CCCAGAGCCTGCGGAACCCACAGAGCACTGAGTGCGCCAGAGCTCTCCCTTTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR CCA 90 bp ACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCTGGATGCGGCCCTTaGCCAGGCGCTGCTTGGCAA +
Preference number: 4 (lower is better)
Translates to: TLGGKTKELPKGRCQWVLPGCGP*PGAAWQ
Trigger: TTGCCAAGCAGCGCCTGGCCAAGGGCCGCATCCAGG...CAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp AAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGTGCTGGTTTATGCACTaGGCCACAGCAAAGCCTGGC +
Preference number: 4 (lower is better)
Translates to: KELPKGRCQWVLPPAAVRCWFMH*ATAKPG
Trigger: GCCAGGCTTTGCTGTGGCCCAGTGCATAAACCAGCA...CCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp GATGGTGGGCTGCTGGGCGGGAAGGAGGCTAGGGGACAGGTGCATTGTCTCCCCCTGAGTCACAGTGGCTaGTGCTTCCACTGCCACCAG +
Preference number: 4 (lower is better)
Translates to: DGGLLGGKEARGQVHCLPLSHSG*CFHCHQ
Trigger: CTGGTGGCAGTGGAAGCACCAGCCACTGTGACTCAG...GGGGAGACAATGCACCTGTCCCCTAGCCTCCTTCCCGCCCAGCAGCCCACCATC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR TCA 90 bp GGTGGGCTGCTGGGCGGGAAGGAGGCTAGGGGACAGGTGCATTGTCTCCCCCTCTTCACCAGCGGGGCGTaGTGTATAATGAGGAAGACC +
Preference number: 4 (lower is better)
Translates to: GGLLGGKEARGQVHCLPLFTSGA*CIMRKT
Trigger: GGTCTTCCTCATTATACATCACGCCCCGCTGGTGAA...GAGGGGGAGACAATGCACCTGTCCCCTAGCCTCCTTCCCGCCCAGCAGCCCACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR TCA 90 bp ACAGCACCCTCAGCTGGGGTCTCCGTATCTGCTGCAGGCAGTGTGGGGAGCTGGACAGGGAACGCAGCATaGAGAATACCCGGATGGCCC +
Preference number: 4 (lower is better)
Translates to: TAPSAGVSVSAAGSVGSWTGNAA*RIPGWP
Trigger: GGGCCATCCGGGTATTCTTCATGCTGCGTTCCCTGT...CCAGCTCCCCACACTGCCTGCAGCAGATACGGAGACCCCAGCTGAGGGTGCTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR TCA 90 bp AGGGCCCCAGACCCCTCTGAGGTGGCCAATGCCATCGTCTCTACACAGGAGGCCGAAGGCCAGCAAACTTaGCCACTCCCCAGCCAAGTC +
Preference number: 4 (lower is better)
Translates to: RAPDPSEVANAIVSTQEAEGQQT*PLPSQV
Trigger: GACTTGGCTGGGGAGTGGTCAAGTTTGCTGGCCTTC...GGCCTCCTGTGTAGAGACGATGGCATTGGCCACCTCAGAGGGGTCTGGGGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp AGGGCCCCAGACCCCTCTGAGGTGGCCAATGCCATCGTCTCTACACAGGAGGCCAGAGGAAGAGCCTCCTaGGTCACAGTGGCTGGTGCT +
Preference number: 4 (lower is better)
Translates to: RAPDPSEVANAIVSTQEARGRAS*VTVAGA
Trigger: AGCACCAGCCACTGTGACTCAGGAGGCTCTTCCTCT...GGCCTCCTGTGTAGAGACGATGGCATTGGCCACCTCAGAGGGGTCTGGGGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp GATGGTGGGCTGCTGGGCGGGAAGGAGGCTAGGGGACAGGTGCATTGTCTCCCCTTCCCCCGATTCCGGTaGTCCTCATCTGTCTGCACA +
Preference number: 4 (lower is better)
Translates to: DGGLLGGKEARGQVHCLPFPRFR*SSSVCT
Trigger: TGTGCAGACAGATGAGGAGCACCGGAATCGGGGGAA...GGGGAGACAATGCACCTGTCCCCTAGCCTCCTTCCCGCCCAGCAGCCCACCATC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR GCA 90 bp GTTCTAGCCCTGAACGTGCAAGGGTTAAGAGCAGGGGAGAGCCTGGCCAGTTTTTGCGCCTGGCCTGGATaGGGCCCTTGGCCAGGCGCT +
Preference number: 4 (lower is better)
Translates to: VLALNVQGLRAGESLASFCAWPG*GPWPGA
Trigger: AGCGCCTGGCCAAGGGCCGCATCCAGGCCAGGCGCA...AAAACTGGCCAGGCTCTCCCCTGCTCTTAACCCTTGCACGTTCAGGGCTAGAAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR GCA 90 bp GCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCAATGCGCCTGGCCTGGATaGGGCCCTTGGCCAGGCGCT +
Preference number: 4 (lower is better)
Translates to: ATEKANAILRMQPAYSCQCAWPG*GPWPGA
Trigger: AGCGCCTGGCCAAGGGCCGCATCCAGGCCAGGCGCA...TTGGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp AGACTTCAACAGGGAGGAGGCAGCACTGCATGTTGCCATGGTGACGGTCAAAGCTGCGCCTGGCCTGGATaGGGCCCTTGGCCAGGCGCT +
Preference number: 4 (lower is better)
Translates to: RLQQGGGSTACCHGDGQSCAWPG*GPWPGA
Trigger: AGCGCCTGGCCAAGGGCCGCATCCAGGCCAGGCGCA...GCTTTGACCGTCACCATGGCAACATGCAGTGCTGCCTCCTCCCTGTTGAAGTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp GGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATAGGGATGGAGAGCTATaGTGGTTTATGCACTGGGCC +
Preference number: 4 (lower is better)
Translates to: GAAQRTVPVGPAPCGCQDRDGEL*WFMHWA
Trigger: GGCCCAGTGCATAAACCAGCATAGCTCTCCATCCCT...ATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp GTTCTAGCCCTGAACGTGCAAGGGTTAAGAGCAGGGGAGAGCCTGGCCAGTTTTCGGGAGGACTTGCTGTaGCCCCCGCCCACCCAGCTC +
Preference number: 4 (lower is better)
Translates to: VLALNVQGLRAGESLASFREDLL*PPPTQL
Trigger: GAGCTGGGTGGGCGGGGGCCACAGCAAGTCCTCCCG...AAAACTGGCCAGGCTCTCCCCTGCTCTTAACCCTTGCACGTTCAGGGCTAGAAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CCA 90 bp ACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACCCCATCCGGGAGGACTTGCTGTaGCCCCCGCCCACCCAGCTC +
Preference number: 4 (lower is better)
Translates to: TVSFFRVLRSCCFLQDPIREDLL*PPPTQL
Trigger: GAGCTGGGTGGGCGGGGGCCACAGCAAGTCCTCCCG...GATGGGGTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp ACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGGCATCTTCATGCGCCTaGCCTGGATGCGGCCCTTGG +
Preference number: 4 (lower is better)
Translates to: TLGGKTKELPKGRCQWVLASSCA*PGCGPW
Trigger: CCAAGGGCCGCATCCAGGCCAGGCGCATGAAGATGC...CAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp AAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGACTTCTGTTGTCGGCTaGATTGGGAGGTCCAGAAGG +
Preference number: 4 (lower is better)
Translates to: KELPKGRCQWVLPPAAVRTSVVG*IGRSRR
Trigger: CCTTCTGGACCTCCCAATCCAGCCGACAACAGAAGT...CCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp TGTGCACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGCACCAGGGCTCCCACTaGCAAATGGTGGCGACGGTG +
Preference number: 4 (lower is better)
Translates to: CAHWEGRQRSCPKDGASGHQGSH*QMVATV
Trigger: CACCGTCGCCACCATTTGCCAGTGGGAGCCCTGGTG...CCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGTGCACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp TGCACGTCAGAGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCGTTCTGCTCCTGCACTaGGGTCCCAGCAGCGGCCAC +
Preference number: 4 (lower is better)
Translates to: CTSEATEKANAILRMQPAVLLLH*GPSSGH
Trigger: GTGGCCGCTGCTGGGACCTCAGTGCAGGAGCAGAAC...GGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCTCTGACGTGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp CAAGGAGATGGTGGGCTGCTGGGCGGGAAGGAGGCTAGGGGACAGGTGCATTGTAGAGGAAGAGCCTCCTaGGTCACAGTGGCTGGTGCT +
Preference number: 4 (lower is better)
Translates to: QGDGGLLGGKEARGQVHCRGRAS*VTVAGA
Trigger: AGCACCAGCCACTGTGACTCAGGAGGCTCTTCCTCT...ACAATGCACCTGTCCCCTAGCCTCCTTCCCGCCCAGCAGCCCACCATCTCCTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR GCA 90 bp AGACTTCAACAGGGAGGAGGCAGCACTGCATGTTGCCATGGTGACGGTCAAAGCTGTTGCGGGAGGACTTaGTGTGGCCCCCGCCCACCC +
Preference number: 4 (lower is better)
Translates to: RLQQGGGSTACCHGDGQSCCGRT*CGPRPP
Trigger: GGGTGGGCGGGGGCCACAGCAAGTCCTCCCGCAACA...GCTTTGACCGTCACCATGGCAACATGCAGTGCTGCCTCCTCCCTGTTGAAGTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp CACAGAGCTCTTGTTCCCAGTGGCCATCACTTTCCTCTCTTCCCAGGGGCTAAGTGTTGCGGGAGGACTTaGTGTGGCCCCCGCCCACCC +
Preference number: 4 (lower is better)
Translates to: HRALVPSGHHFPLFPGAKCCGRT*CGPRPP
Trigger: GGGTGGGCGGGGGCCACAGCAAGTCCTCCCGCAACA...CTTAGCCCCTGGGAAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp AGGGCCCCAGACCCCTCTGAGGTGGCCAATGCCATCGTCTCTACACAGGAGGCCTTCCCCCGATTCCGGTaGTCCTCATCTGTCTGCACA +
Preference number: 4 (lower is better)
Translates to: RAPDPSEVANAIVSTQEAFPRFR*SSSVCT
Trigger: TGTGCAGACAGATGAGGAGCACCGGAATCGGGGGAA...GGCCTCCTGTGTAGAGACGATGGCATTGGCCACCTCAGAGGGGTCTGGGGCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp CCTCAGCTGGGGTCTCCGTATCTGCTGCAGGCAGTGTGGGGAGCTGGGAGATGCTCGTCTGTGGTGTTCTaGTCCTGCACTGAGGTCCCA +
Preference number: 4 (lower is better)
Translates to: PQLGSPYLLQAVWGAGRCSSVVF*SCTEVP
Trigger: TGGGACCTCAGTGCAGGAGCAGAACACCACAGACGA...GCATCTCCCAGCTCCCCACACTGCCTGCAGCAGATACGGAGACCCCAGCTGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR GCA 90 bp AGGGCCCCAGACCCCTCTGAGGTGGCCAATGCCATCGTCTCTACACAGGAGGCCCTGGTCAGTACTTGCTaGTTCAGGAGCAGGCAGCTC +
Preference number: 4 (lower is better)
Translates to: RAPDPSEVANAIVSTQEALVSTC*FRSRQL
Trigger: GAGCTGCCTGCTCCTGAAGCAGCAAGTACTGACCAG...GGCCTCCTGTGTAGAGACGATGGCATTGGCCACCTCAGAGGGGTCTGGGGCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp GGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATTCCAAACAGGCCAGGTaGACATCCTTGATGACACAG +
Preference number: 4 (lower is better)
Translates to: GAAQRTVPVGPAPCGCQDSKQAR*TSLMTQ
Trigger: CTGTGTCATCAAGGATGTGCACCTGGCCTGTTTGGA...ATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp GATGGTGGGCTGCTGGGCGGGAAGGAGGCTAGGGGACAGGTGCATTGTCTCCCCGACACTCTCTTCTCTTaGACCCTCCAAACAGGCCAG +
Preference number: 4 (lower is better)
Translates to: DGGLLGGKEARGQVHCLPDTLFS*TLQTGQ
Trigger: CTGGCCTGTTTGGAGGGTGCAAGAGAAGAGAGTGTC...GGGGAGACAATGCACCTGTCCCCTAGCCTCCTTCCCGCCCAGCAGCCCACCATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115823.2
ENSMUST00000115828.9
CDS-3UTR GCA 90 bp GGGAAGAAGCCGAAGGCCTGTGGGTACTGGGACTTCCTCACTCATGGCTTCCCTTGCCAGTCAGTGGAGTaGCCGTTGGGGGCAGGAGGA +
Preference number: 4 (lower is better)
Translates to: GKKPKACGYWDFLTHGFPCQSVE*PLGAGG
Trigger: TCCTCCTGCCCCCAACGGGCACTCCACTGACTGGCA...AGGGAAGCCATGAGTGAGGAAGTCCCAGTACCCACAGGCCTTCGGCTTCTTCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR GCA 90 bp ACTCAGTGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCGGTTCCCCTCGCAGCTaGAGTGACAGGGAACGCAGC +
Preference number: 4 (lower is better)
Translates to: TQCVSSVLVEQGDGGLLGGSPRS*SDRERS
Trigger: GCTGCGTTCCCTGTCACTGCAGCTGCGAGGGGAACC...GCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACACTGAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR GCA 90 bp ACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCTTGGCCAGGCGCTaGTTGGCAATAATGCAGCGG +
Preference number: 4 (lower is better)
Translates to: TLGGKTKELPKGRCQWVLPLARR*LAIMQR
Trigger: CCGCTGCATTATTGCCAAGCAGCGCCTGGCCAAGGG...CAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp TGTGCACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGCCCTTGGCCAGGCGCTaGTTGGCAATAATGCAGCGG +
Preference number: 4 (lower is better)
Translates to: CAHWEGRQRSCPKDGASGPLARR*LAIMQR
Trigger: CCGCTGCATTATTGCCAAGCAGCGCCTGGCCAAGGG...CCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGTGCACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp TGTGCACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGAGGGCGGCTATCCTCTaGATCTTCATGCGCCTGGCC +
Preference number: 4 (lower is better)
Translates to: CAHWEGRQRSCPKDGASGRAAIL*IFMRLA
Trigger: GGCCAGGCGCATGAAGATGCAGAGGATAGCCGCCCT...CCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGTGCACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp AGGGCCCCAGACCCCTCTGAGGTGGCCAATGCCATCGTCTCTACACAGGAGGCCGGTCACTGCTGCCTCTaGGGCACTGCTCATAGAAAC +
Preference number: 4 (lower is better)
Translates to: RAPDPSEVANAIVSTQEAGHCCL*GTAHRN
Trigger: GTTTCTATGAGCAGTGCCGCAGAGGCAGCAGTGACC...GGCCTCCTGTGTAGAGACGATGGCATTGGCCACCTCAGAGGGGTCTGGGGCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp AAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGAGCTATGCTGGTTTATaGACTGGGCCACAGCAAAGC +
Preference number: 4 (lower is better)
Translates to: KELPKGRCQWVLPPAAVRSYAGL*TGPQQS
Trigger: GCTTTGCTGTGGCCCAGTGCATAAACCAGCATAGCT...CCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp AGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCTGGGGAGCTGGGAGATaGCAGAGAGGGCTCGGAGGC +
Preference number: 4 (lower is better)
Translates to: RPQRKPMPSLGCSQPTPAWGAGR*QRGLGG
Trigger: GCCTCCGAGCCCTCTCTGGCATCTCCCAGCTCCCCA...GGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp ATGACAGGGATGGAGAGCTATGCTGGTTTATGCACTGGGCCACAGCAAAGCCTGCGGGAGGACTTGCTGTaGCCCCCGCCCACCCAGCTC +
Preference number: 4 (lower is better)
Translates to: MTGMESYAGLCTGPQQSLREDLL*PPPTQL
Trigger: GAGCTGGGTGGGCGGGGGCCACAGCAAGTCCTCCCG...CAGGCTTTGCTGTGGCCCAGTGCATAAACCAGCATAGCTCTCCATCCCTGTCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CCA 90 bp CTACACAGGAGGCCGTTTCTAGGATCCCAGCCTGCTCAGCGAGAGGTCAGAGCACAGTGGAGTGCCCGTTaGGGGCAGGAGGATGGAAGC +
Preference number: 4 (lower is better)
Translates to: LHRRPFLGSQPAQREVRAQWSAR*GQEDGS
Trigger: GCTTCCATCCTCCTGCCCCCAACGGGCACTCCACTG...TGCTCTGACCTCTCGCTGAGCAGGCTGGGATCCTAGAAACGGCCTCCTGTGTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp TGTGCACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGGTCAATGCCAGTCAGTaGAGTGCCCGTTGGGGGCAG +
Preference number: 4 (lower is better)
Translates to: CAHWEGRQRSCPKDGASGVNASQ*SARWGQ
Trigger: CTGCCCCCAACGGGCACTCCACTGACTGGCATTGAC...CCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGTGCACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp GCAGGTGCTGGGAGGAGGAGGAGGAGGAGCAGAGTCCAAATCCCAGGACTTCTGGTCAATGCCAGTCAGTaGAGTGCCCGTTGGGGGCAG +
Preference number: 4 (lower is better)
Translates to: AGAGRRRRRSRVQIPGLLVNASQ*SARWGQ
Trigger: CTGCCCCCAACGGGCACTCCACTGACTGGCATTGAC...CAGAAGTCCTGGGATTTGGACTCTGCTCCTCCTCCTCCTCCTCCCAGCACCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CCA 90 bp TGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCGGGAAGCGAGTCAGTGGCAACTaGGTCTCAGGTTCCCCTCGC +
Preference number: 4 (lower is better)
Translates to: CVSSVLVEQGDGGLLGGKRVSGN*VSGSPR
Trigger: GCGAGGGGAACCTGAGACCCAGTTGCCACTGACTCG...CTTCCCGCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR CCA 90 bp ACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCGAGTCAGTGGCAACTaGGTCTCAGGTTCCCCTCGC +
Preference number: 4 (lower is better)
Translates to: TLGGKTKELPKGRCQWVLRVSGN*VSGSPR
Trigger: GCGAGGGGAACCTGAGACCCAGTTGCCACTGACTCG...CAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp AGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCCCTGGATGCGGCCCTTaGCCAGGCGCTGCTTGGCAA +
Preference number: 4 (lower is better)
Translates to: RPQRKPMPSLGCSQPTPAPGCGP*PGAAWQ
Trigger: TTGCCAAGCAGCGCCTGGCCAAGGGCCGCATCCAGG...GGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp AGGCCTGTGGGTACTGGGACTTCCTCACTCATGGCTTCCCTTGTCAGGGGACCAGCATCTTCATGCGCCTaGCCTGGATGCGGCCCTTGG +
Preference number: 4 (lower is better)
Translates to: RPVGTGTSSLMASLVRGPASSCA*PGCGPW
Trigger: CCAAGGGCCGCATCCAGGCCAGGCGCATGAAGATGC...TGGTCCCCTGACAAGGGAAGCCATGAGTGAGGAAGTCCCAGTACCCACAGGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CCA 90 bp CAGTGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCGGGGGCCACAGCAAAGCCTaGCACCTTGTCTACGGATGC +
Preference number: 4 (lower is better)
Translates to: QCVSSVLVEQGDGGLLGGGHSKA*HLVYGC
Trigger: GCATCCGTAGACAAGGTGCCAGGCTTTGCTGTGGCC...CCCGCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACACTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR CCA 90 bp ATAGAGGGCGCTCACCACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGCACCAGGGCTCCCACTaGCAAATGGTGGCGACGGTG +
Preference number: 4 (lower is better)
Translates to: IEGAHHHTESDLWEVSHLHQGSH*QMVATV
Trigger: CACCGTCGCCACCATTTGCCAGTGGGAGCCCTGGTG...CAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGTGGTGAGCGCCCTCTAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CAA 72 bp GCCTGGCACCTTGTCTACGGATGCAAACACAGAGCGTaGCACTGTCGGGTCACTGCTGCCTCTGCGGCACTG +
Preference number: 4 (lower is better)
Translates to: AWHLVYGCKHRA*HCRVTAASAAL
Trigger: CAGTGCCGCAGAGGCAGCAGTGACCCGACAGTGCAACGCTCTGTGTTTGCATCCGTAGACAAGGTGCCAGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR TCA 90 bp AAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGGCGATGTCTCGTGGCTaGTGTTCTCAAAGAGAATGT +
Preference number: 4 (lower is better)
Translates to: KELPKGRCQWVLPPAAVRAMSRG*CSQREC
Trigger: ACATTCTCTTTGAGAACATCAGCCACGAGACATCGC...CCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp AAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGTCACATGGCTCCCAATaGACCAGACCAAATTGGAGA +
Preference number: 4 (lower is better)
Translates to: KELPKGRCQWVLPPAAVRSHGSQ*TRPNWR
Trigger: TCTCCAATTTGGTCTGGTTCATTGGGAGCCATGTGA...CCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp AGACTTCAACAGGGAGGAGGCAGCACTGCATGTTGCCATGGTGACGGTCAAAGCGTTCTGCTCCTGCACTaGGGTCCCAGCAGCGGCCAC +
Preference number: 4 (lower is better)
Translates to: RLQQGGGSTACCHGDGQSVLLLH*GPSSGH
Trigger: GTGGCCGCTGCTGGGACCTCAGTGCAGGAGCAGAAC...GCTTTGACCGTCACCATGGCAACATGCAGTGCTGCCTCCTCCCTGTTGAAGTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp GCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCAACGGGCTCTGGGTTGCTaGGGGTGCAGAGGAAGAGCC +
Preference number: 4 (lower is better)
Translates to: ATEKANAILRMQPAYSCQRALGC*GCRGRA
Trigger: GGCTCTTCCTCTGCACCCTCAGCAACCCAGAGCCCG...TTGGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp TGTGCACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGAGAGCTCCTGGCCGATaGGTTCTTGCTGGGCTTGGA +
Preference number: 4 (lower is better)
Translates to: CAHWEGRQRSCPKDGASGRAPGR*VLAGLG
Trigger: TCCAAGCCCAGCAAGAACTCATCGGCCAGGAGCTCT...CCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGTGCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp ACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGTGCAGGTGGTCCAAGTaGTCAGCCACCAGGTCACTC +
Preference number: 4 (lower is better)
Translates to: TLGGKTKELPKGRCQWVLCRWSK*SATRSL
Trigger: GAGTGACCTGGTGGCTGAGCACTTGGACCACCTGCA...CAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp CAAGGAGATGGTGGGCTGCTGGGCGGGAAGGAGGCTAGGGGACAGGTGCATTGTCTGGTCAGTACTTGCTaGTTCAGGAGCAGGCAGCTC +
Preference number: 4 (lower is better)
Translates to: QGDGGLLGGKEARGQVHCLVSTC*FRSRQL
Trigger: GAGCTGCCTGCTCCTGAAGCAGCAAGTACTGACCAG...ACAATGCACCTGTCCCCTAGCCTCCTTCCCGCCCAGCAGCCCACCATCTCCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115823.2
ENSMUST00000115828.9
CDS-3UTR GCA 90 bp AGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCTGCCAGTCAGTGGAGTaGCCGTTGGGGGCAGGAGGA +
Preference number: 4 (lower is better)
Translates to: RPQRKPMPSLGCSQPTPACQSVE*PLGAGG
Trigger: TCCTCCTGCCCCCAACGGGCACTCCACTGACTGGCA...GGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp ACAGCACCCTCAGCTGGGGTCTCCGTATCTGCTGCAGGCAGTGTGGGGAGCTGGTCCACTCCTGTCACCTaGATGTCCTGTAGAAGGCCA +
Preference number: 4 (lower is better)
Translates to: TAPSAGVSVSAAGSVGSWSTPVT*MSCRRP
Trigger: TGGCCTTCTACAGGACATGCAGGTGACAGGAGTGGA...CCAGCTCCCCACACTGCCTGCAGCAGATACGGAGACCCCAGCTGAGGGTGCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR GCA 90 bp GGGAAGAAGCCGAAGGCCTGTGGGTACTGGGACTTCCTCACTCATGGCTTCCCTCCCTTGGCCAGGCGCTaGTTGGCAATAATGCAGCGG +
Preference number: 4 (lower is better)
Translates to: GKKPKACGYWDFLTHGFPPLARR*LAIMQR
Trigger: CCGCTGCATTATTGCCAAGCAGCGCCTGGCCAAGGG...AGGGAAGCCATGAGTGAGGAAGTCCCAGTACCCACAGGCCTTCGGCTTCTTCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR GCA 90 bp CTACACAGGAGGCCGTTTCTAGGATCCCAGCCTGCTCAGCGAGAGGTCAGAGCACCCTTGGCCAGGCGCTaGTTGGCAATAATGCAGCGG +
Preference number: 4 (lower is better)
Translates to: LHRRPFLGSQPAQREVRAPLARR*LAIMQR
Trigger: CCGCTGCATTATTGCCAAGCAGCGCCTGGCCAAGGG...TGCTCTGACCTCTCGCTGAGCAGGCTGGGATCCTAGAAACGGCCTCCTGTGTAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp GGTGAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACGGCTGGTGCTTCCACTaGCACCAGGGCTCCCACTGG +
Preference number: 4 (lower is better)
Translates to: GETVSFFRVLRSCCFLQDGWCFH*HQGSHW
Trigger: CCAGTGGGAGCCCTGGTGGCAGTGGAAGCACCAGCC...GTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp GCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCAATGGGGAGCTGGGAGATaGCAGAGAGGGCTCGGAGGC +
Preference number: 4 (lower is better)
Translates to: ATEKANAILRMQPAYSCQWGAGR*QRGLGG
Trigger: GCCTCCGAGCCCTCTCTGGCATCTCCCAGCTCCCCA...TTGGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp CCCTCTGGGAGCAACCTTAAAGCCAGCTGTGGGAACAGGCTTATTGTTGGTGAACGGGAGGACTTGCTGTaGCCCCCGCCCACCCAGCTC +
Preference number: 4 (lower is better)
Translates to: PSGSNLKASCGNRLIVGEREDLL*PPPTQL
Trigger: GAGCTGGGTGGGCGGGGGCCACAGCAAGTCCTCCCG...TTCACCAACAATAAGCCTGTTCCCACAGCTGGCTTTAAGGTTGCTCCCAGAGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp AGGGCCCCAGACCCCTCTGAGGTGGCCAATGCCATCGTCTCTACACAGGAGGCCCCGGATCCTGCCATCTaGCTGAGCAGCATTGTTCAT +
Preference number: 4 (lower is better)
Translates to: RAPDPSEVANAIVSTQEAPDPAI*LSSIVH
Trigger: ATGAACAATGCTGCTCAGCCAGATGGCAGGATCCGG...GGCCTCCTGTGTAGAGACGATGGCATTGGCCACCTCAGAGGGGTCTGGGGCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp CTGGGCCACAGCAAAGCCTGGCACCTTGTCTACGGATGCAAACACAGAGCGTTGCAGTGGAGTGCCCGTTaGGGGCAGGAGGATGGAAGC +
Preference number: 4 (lower is better)
Translates to: LGHSKAWHLVYGCKHRALQWSAR*GQEDGS
Trigger: GCTTCCATCCTCCTGCCCCCAACGGGCACTCCACTG...CAACGCTCTGTGTTTGCATCCGTAGACAAGGTGCCAGGCTTTGCTGTGGCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CCA 90 bp GGGAAGAAGCCGAAGGCCTGTGGGTACTGGGACTTCCTCACTCATGGCTTCCCTCGAGTCAGTGGCAACTaGGTCTCAGGTTCCCCTCGC +
Preference number: 4 (lower is better)
Translates to: GKKPKACGYWDFLTHGFPRVSGN*VSGSPR
Trigger: GCGAGGGGAACCTGAGACCCAGTTGCCACTGACTCG...AGGGAAGCCATGAGTGAGGAAGTCCCAGTACCCACAGGCCTTCGGCTTCTTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CCA 90 bp GTTCTAGCCCTGAACGTGCAAGGGTTAAGAGCAGGGGAGAGCCTGGCCAGTTTTTTCATGCGCCTGGCCTaGATGCGGCCCTTGGCCAGG +
Preference number: 4 (lower is better)
Translates to: VLALNVQGLRAGESLASFFMRLA*MRPLAR
Trigger: CCTGGCCAAGGGCCGCATCCAGGCCAGGCGCATGAA...AAAACTGGCCAGGCTCTCCCCTGCTCTTAACCCTTGCACGTTCAGGGCTAGAAC
60% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CCA 90 bp TGTAGGGAGAGGTATGAGGGGCAGTTTTCAGGGCCACGGAGAATTGTGGGTGCTTTCATGCGCCTGGCCTaGATGCGGCCCTTGGCCAGG +
Preference number: 4 (lower is better)
Translates to: CRERYEGQFSGPRRIVGAFMRLA*MRPLAR
Trigger: CCTGGCCAAGGGCCGCATCCAGGCCAGGCGCATGAA...AGCACCCACAATTCTCCGTGGCCCTGAAAACTGCCCCTCATACCTCTCCCTACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp GGTGAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACTTCATGCGCCTGGCCTaGATGCGGCCCTTGGCCAGG +
Preference number: 4 (lower is better)
Translates to: GETVSFFRVLRSCCFLQDFMRLA*MRPLAR
Trigger: CCTGGCCAAGGGCCGCATCCAGGCCAGGCGCATGAA...GTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp ACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCTGAGTCACAGTGGCTaGTGCTTCCACTGCCACCAG +
Preference number: 4 (lower is better)
Translates to: TLGGKTKELPKGRCQWVLLSHSG*CFHCHQ
Trigger: CTGGTGGCAGTGGAAGCACCAGCCACTGTGACTCAG...CAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp CTCTGGGACCTCCAGGTCAGGAGCTGTGGGACCTACTGGACCTTAGATCCCTCAAGAGCAAGGAGATGGTaGGCTGCTGGGCGGGAAGGA +
Preference number: 4 (lower is better)
Translates to: LWDLQVRSCGTYWTLDPSRARRW*AAGREG
Trigger: TCCTTCCCGCCCAGCAGCCCACCATCTCCTTGCTCT...TGAGGGATCTAAGGTCCAGTAGGTCCCACAGCTCCTGACCTGGAGGTCCCAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp TTCCACTGCCACCAGGGCTCCCACTGGCAAATGGTGGCGACGGTGATGACAGGGCAGCGGTTTTGTCTCTaGTGTAGTGCAGCATGGCCT +
Preference number: 4 (lower is better)
Translates to: FHCHQGSHWQMVATVMTGQRFCL*CSAAWP
Trigger: AGGCCATGCTGCACTACATCAGAGACAAAACCGCTG...CCCTGTCATCACCGTCGCCACCATTTGCCAGTGGGAGCCCTGGTGGCAGTGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR TCA 90 bp AAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGGATCACCATTCAGAATaGCTTCAGCCAGAGAGTTCA +
Preference number: 4 (lower is better)
Translates to: KELPKGRCQWVLPPAAVRDHHSE*LQPESS
Trigger: TGAACTCTCTGGCTGAAGTCATTCTGAATGGTGATC...CCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp CTCTGGGACCTCCAGGTCAGGAGCTGTGGGACCTACTGGACCTTAGATCCCTCAGAAGGCCAGCAAACTTaGCCACTCCCCAGCCAAGTC +
Preference number: 4 (lower is better)
Translates to: LWDLQVRSCGTYWTLDPSEGQQT*PLPSQV
Trigger: GACTTGGCTGGGGAGTGGTCAAGTTTGCTGGCCTTC...TGAGGGATCTAAGGTCCAGTAGGTCCCACAGCTCCTGACCTGGAGGTCCCAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp GCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCAATGCCAGTCAGTGGAGTaGCCGTTGGGGGCAGGAGGA +
Preference number: 4 (lower is better)
Translates to: ATEKANAILRMQPAYSCQCQSVE*PLGAGG
Trigger: TCCTCCTGCCCCCAACGGGCACTCCACTGACTGGCA...TTGGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp AGTTCTAGCCCTGAACGTGCAAGGGTTAAGAGCAGGGGAGAGCCTGGCCAGTTTGGTTCCCCTCGCAGCTaGAGTGACAGGGAACGCAGC +
Preference number: 4 (lower is better)
Translates to: SSSPERARVKSRGEPGQFGSPRS*SDRERS
Trigger: GCTGCGTTCCCTGTCACTGCAGCTGCGAGGGGAACC...AAACTGGCCAGGCTCTCCCCTGCTCTTAACCCTTGCACGTTCAGGGCTAGAACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR GCA 90 bp ACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACCCCATCGGTTCCCCTCGCAGCTaGAGTGACAGGGAACGCAGC +
Preference number: 4 (lower is better)
Translates to: TVSFFRVLRSCCFLQDPIGSPRS*SDRERS
Trigger: GCTGCGTTCCCTGTCACTGCAGCTGCGAGGGGAACC...GATGGGGTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp AGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCTCCTCTGCATCTTCATaGGCCTGGCCTGGATGCGGC +
Preference number: 4 (lower is better)
Translates to: RPQRKPMPSLGCSQPTPASSASS*AWPGCG
Trigger: GCCGCATCCAGGCCAGGCGCATGAAGATGCAGAGGA...GGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp CCGAAGGCCTGTGGGTACTGGGACTTCCTCACTCATGGCTTCCCTTGTCAGGGGGGTCACTGCTGCCTCTaGGGCACTGCTCATAGAAAC +
Preference number: 4 (lower is better)
Translates to: PKACGYWDFLTHGFPCQGGHCCL*GTAHRN
Trigger: GTTTCTATGAGCAGTGCCGCAGAGGCAGCAGTGACC...CCCCTGACAAGGGAAGCCATGAGTGAGGAAGTCCCAGTACCCACAGGCCTTCGG
59% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR GCA 90 bp GTGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCGGGAAGGTCACTGCTGCCTCTaGGGCACTGCTCATAGAAAC +
Preference number: 4 (lower is better)
Translates to: VCQQCPRRARRWWAAGREGHCCL*GTAHRN
Trigger: GTTTCTATGAGCAGTGCCGCAGAGGCAGCAGTGACC...TTCCCGCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR GCA 90 bp GTGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCGGGAAGCAAACACAGAGCGTTaGACTGTCGGGTCACTGCTG +
Preference number: 4 (lower is better)
Translates to: VCQQCPRRARRWWAAGREANTER*TVGSLL
Trigger: CAGCAGTGACCCGACAGTGCAACGCTCTGTGTTTGC...TTCCCGCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR CCA 90 bp GATTGGGAGGTCCAGAAGGGCGGCTATCCTCTGCATCTTCATGCGCCTGGCCTGAGGTGGTCCAAGGAGTaGATGTTGCGGGAGGACTTG +
Preference number: 4 (lower is better)
Translates to: DWEVQKGGYPLHLHAPGLRWSKE*MLREDL
Trigger: CAAGTCCTCCCGCAACATCCACTCCTTGGACCACCT...CAGGCCAGGCGCATGAAGATGCAGAGGATAGCCGCCCTTCTGGACCTCCCAATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CCA 90 bp GGTGGGCTGCTGGGCGGGAAGGAGGCTAGGGGACAGGTGCATTGTCTCCCCCTCCTTTGTTATGAGACATaGCATACAGGAGGCAGAGCA +
Preference number: 4 (lower is better)
Translates to: GGLLGGKEARGQVHCLPLLCYET*HTGGRA
Trigger: TGCTCTGCCTCCTGTATGCCATGTCTCATAACAAAG...GAGGGGGAGACAATGCACCTGTCCCCTAGCCTCCTTCCCGCCCAGCAGCCCACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115823.2
ENSMUST00000115828.9
CDS-3UTR CCA 90 bp AGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCGTCAATGCCAGTCAGTaGAGTGCCCGTTGGGGGCAG +
Preference number: 4 (lower is better)
Translates to: RPQRKPMPSLGCSQPTPAVNASQ*SARWGQ
Trigger: CTGCCCCCAACGGGCACTCCACTGACTGGCATTGAC...GGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp AGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCCGAGTCAGTGGCAACTaGGTCTCAGGTTCCCCTCGC +
Preference number: 4 (lower is better)
Translates to: RPQRKPMPSLGCSQPTPARVSGN*VSGSPR
Trigger: GCGAGGGGAACCTGAGACCCAGTTGCCACTGACTCG...GGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp TGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCGGGAAGACAGCCAGGAACCGCTaGACCATACCACCATCCTTG +
Preference number: 4 (lower is better)
Translates to: CVSSVLVEQGDGGLLGGKTARNR*TIPPSL
Trigger: CAAGGATGGTGGTATGGTCCAGCGGTTCCTGGCTGT...CTTCCCGCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR CCA 90 bp GAAGAGAGTCATTCATTCCCCCACCCGCCCCAGCCGGTGGCACCTTCTGCATATCTCCCCAGCCAAGTCTaGATACGTCAGGCTCCACCA +
Preference number: 4 (lower is better)
Translates to: EESHSFPHPPQPVAPSAYLPSQV*IRQAPP
Trigger: TGGTGGAGCCTGACGTATCCAGACTTGGCTGGGGAG...ATATGCAGAAGGTGCCACCGGCTGGGGCGGGTGGGGGAATGAATGACTCTCTTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CCA 90 bp CTCTGGGACCTCCAGGTCAGGAGCTGTGGGACCTACTGGACCTTAGATCCCTCACTCCCCAGCCAAGTCTaGATACGTCAGGCTCCACCA +
Preference number: 4 (lower is better)
Translates to: LWDLQVRSCGTYWTLDPSLPSQV*IRQAPP
Trigger: TGGTGGAGCCTGACGTATCCAGACTTGGCTGGGGAG...TGAGGGATCTAAGGTCCAGTAGGTCCCACAGCTCCTGACCTGGAGGTCCCAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp TGCACGTCAGAGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCGGGTTCCGCAGGCTCTaGGTTTACAGCACCCTCAGC +
Preference number: 4 (lower is better)
Translates to: CTSEATEKANAILRMQPAGFRRL*VYSTLS
Trigger: GCTGAGGGTGCTGTAAACCCAGAGCCTGCGGAACCC...GGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCTCTGACGTGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp AAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGGGACAGTGTGGTTGTTaGGCTTTAATGAAAGCGTTT +
Preference number: 4 (lower is better)
Translates to: KELPKGRCQWVLPPAAVRGQCGC*ALMKAF
Trigger: AAACGCTTTCATTAAAGCTCAACAACCACACTGTCC...CCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp TGTGCACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGCAGCGGTTTTGTCTCTaGTGTAGTGCAGCATGGCCT +
Preference number: 4 (lower is better)
Translates to: CAHWEGRQRSCPKDGASGQRFCL*CSAAWP
Trigger: AGGCCATGCTGCACTACATCAGAGACAAAACCGCTG...CCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGTGCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp TTTCATTCCCAATCACTGACTGGTCTAGGTGAGGCTGAGGCTGTTCTGGAGTCGGTTCTGCTCCTGCACTaGGGTCCCAGCAGCGGCCAC +
Preference number: 4 (lower is better)
Translates to: FHSQSLTGLGEAEAVLESVLLLH*GPSSGH
Trigger: GTGGCCGCTGCTGGGACCTCAGTGCAGGAGCAGAAC...CGACTCCAGAACAGCCTCAGCCTCACCTAGACCAGTCAGTGATTGGGAATGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115823.2
ENSMUST00000115828.9
CDS-3UTR TCA 90 bp CAAGGAGATGGTGGGCTGCTGGGCGGGAAGGAGGCTAGGGGACAGGTGCATTGTATCCTGCCATCTGGCTaGGCAGCATTGTTCATGATC +
Preference number: 4 (lower is better)
Translates to: QGDGGLLGGKEARGQVHCILPSG*AALFMI
Trigger: GATCATGAACAATGCTGCTCAGCCAGATGGCAGGAT...ACAATGCACCTGTCCCCTAGCCTCCTTCCCGCCCAGCAGCCCACCATCTCCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115823.2
ENSMUST00000115828.9
CDS-3UTR TCA 90 bp GCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCAACCCTCGCAGCTGCAGTaGCAGGGAACGCAGCATGAA +
Preference number: 4 (lower is better)
Translates to: ATEKANAILRMQPAYSCQPSQLQ*QGTQHE
Trigger: TTCATGCTGCGTTCCCTGTCACTGCAGCTGCGAGGG...TTGGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp CACAGAGCTCTTGTTCCCAGTGGCCATCACTTTCCTCTCTTCCCAGGGGCTAAGCCCTCGCAGCTGCAGTaGCAGGGAACGCAGCATGAA +
Preference number: 4 (lower is better)
Translates to: HRALVPSGHHFPLFPGAKPSQLQ*QGTQHE
Trigger: TTCATGCTGCGTTCCCTGTCACTGCAGCTGCGAGGG...CTTAGCCCCTGGGAAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp GGTGAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACCCCTCGCAGCTGCAGTaGCAGGGAACGCAGCATGAA +
Preference number: 4 (lower is better)
Translates to: GETVSFFRVLRSCCFLQDPSQLQ*QGTQHE
Trigger: TTCATGCTGCGTTCCCTGTCACTGCAGCTGCGAGGG...GTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp GAAGAGAGTCATTCATTCCCCCACCCGCCCCAGCCGGTGGCACCTTCTGCATATCAGGCTTGTGAATGGTaGTGTTCAGGGCACGGCTGT +
Preference number: 4 (lower is better)
Translates to: EESHSFPHPPQPVAPSAYQACEW*CSGHGC
Trigger: ACAGCCGTGCCCTGAACATCACCATTCACAAGCCTG...ATATGCAGAAGGTGCCACCGGCTGGGGCGGGTGGGGGAATGAATGACTCTCTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR TCA 90 bp CTCTGGGACCTCCAGGTCAGGAGCTGTGGGACCTACTGGACCTTAGATCCCTCACAGGCTTGTGAATGGTaGTGTTCAGGGCACGGCTGT +
Preference number: 4 (lower is better)
Translates to: LWDLQVRSCGTYWTLDPSQACEW*CSGHGC
Trigger: ACAGCCGTGCCCTGAACATCACCATTCACAAGCCTG...TGAGGGATCTAAGGTCCAGTAGGTCCCACAGCTCCTGACCTGGAGGTCCCAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp GAGCTCCTGGCCGATGAGTTCTTGCTGGGCTTGGAGTTGACATCCATTTCATTCCGGGCTCTGGGTTGCTaGGGGTGCAGAGGAAGAGCC +
Preference number: 4 (lower is better)
Translates to: ELLADEFLLGLELTSISFRALGC*GCRGRA
Trigger: GGCTCTTCCTCTGCACCCTCAGCAACCCAGAGCCCG...GAATGAAATGGATGTCAACTCCAAGCCCAGCAAGAACTCATCGGCCAGGAGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR GCA 90 bp ATAGAGGGCGCTCACCACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGTTCCCCCGATTCCGGTaGTCCTCATCTGTCTGCACA +
Preference number: 4 (lower is better)
Translates to: IEGAHHHTESDLWEVSHLFPRFR*SSSVCT
Trigger: TGTGCAGACAGATGAGGAGCACCGGAATCGGGGGAA...CAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGTGGTGAGCGCCCTCTAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp CATGCGCCTGGCCTGGATGCGGCCCTTGGCCAGGCGCTGCTTGGCAATAATGCACCCCACTTGTCTTCATaGTTTTTGAACCACCCTCTG +
Preference number: 4 (lower is better)
Translates to: HAPGLDAALGQALLGNNAPHLSS*FLNHPL
Trigger: CAGAGGGTGGTTCAAAAAGCATGAAGACAAGTGGGG...TGCATTATTGCCAAGCAGCGCCTGGCCAAGGGCCGCATCCAGGCCAGGCGCATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR GCA 90 bp TGTAGGGAGAGGTATGAGGGGCAGTTTTCAGGGCCACGGAGAATTGTGGGTGCTGTGGTGTTCTGCTCCTaGACTGAGGTCCCAGCAGCG +
Preference number: 4 (lower is better)
Translates to: CRERYEGQFSGPRRIVGAVVFCS*TEVPAA
Trigger: CGCTGCTGGGACCTCAGTGCAGGAGCAGAACACCAC...AGCACCCACAATTCTCCGTGGCCCTGAAAACTGCCCCTCATACCTCTCCCTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp CCAGGACTTCTGTTGTCGGCTGGATTGGGAGGTCCAGAAGGGCGGCTATCCTCTTCGTCTGTGGTGTTCTaGTCCTGCACTGAGGTCCCA +
Preference number: 4 (lower is better)
Translates to: PGLLLSAGLGGPEGRLSSSSVVF*SCTEVP
Trigger: TGGGACCTCAGTGCAGGAGCAGAACACCACAGACGA...AGAGGATAGCCGCCCTTCTGGACCTCCCAATCCAGCCGACAACAGAAGTCCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR GCA 90 bp ATAGAGGGCGCTCACCACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGCTGGTCAGTACTTGCTaGTTCAGGAGCAGGCAGCTC +
Preference number: 4 (lower is better)
Translates to: IEGAHHHTESDLWEVSHLLVSTC*FRSRQL
Trigger: GAGCTGCCTGCTCCTGAAGCAGCAAGTACTGACCAG...CAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGTGGTGAGCGCCCTCTAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp GTGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCGGGAAGACACTCTCTTCTCTTaGACCCTCCAAACAGGCCAG +
Preference number: 4 (lower is better)
Translates to: VCQQCPRRARRWWAAGREDTLFS*TLQTGQ
Trigger: CTGGCCTGTTTGGAGGGTGCAAGAGAAGAGAGTGTC...TTCCCGCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115823.2
ENSMUST00000115828.9
CDS-3UTR GCA 90 bp TGCATGTCCTGTAGAAGGCCAGCAAACTTGACCACTCCCCAGCCAAGTCTGGATTGCCAGTCAGTGGAGTaGCCGTTGGGGGCAGGAGGA +
Preference number: 4 (lower is better)
Translates to: CMSCRRPANLTTPQPSLDCQSVE*PLGAGG
Trigger: TCCTCCTGCCCCCAACGGGCACTCCACTGACTGGCA...ATCCAGACTTGGCTGGGGAGTGGTCAAGTTTGCTGGCCTTCTACAGGACATGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR GCA 90 bp ACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGCCTAAGACTTCAACAGGGTTCCCCTCGCAGCTaGAGTGACAGGGAACGCAGC +
Preference number: 4 (lower is better)
Translates to: TTLSLTCGKCPTCLRLQQGSPRS*SDRERS
Trigger: GCTGCGTTCCCTGTCACTGCAGCTGCGAGGGGAACC...CTGTTGAAGTCTTAGGCAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp CCGAAGGCCTGTGGGTACTGGGACTTCCTCACTCATGGCTTCCCTTGTCAGGGGTCCACTCCTGTCACCTaGATGTCCTGTAGAAGGCCA +
Preference number: 4 (lower is better)
Translates to: PKACGYWDFLTHGFPCQGSTPVT*MSCRRP
Trigger: TGGCCTTCTACAGGACATGCAGGTGACAGGAGTGGA...CCCCTGACAAGGGAAGCCATGAGTGAGGAAGTCCCAGTACCCACAGGCCTTCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR GCA 90 bp GTGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCGGGAAAACACGAAGGTGGCCTaGAGGATAGGGAAGGGCTTA +
Preference number: 4 (lower is better)
Translates to: VCQQCPRRARRWWAAGRENTKVA*RIGKGL
Trigger: TAAGCCCTTCCCTATCCTGCAGGCCACCTTCGTGTT...TTCCCGCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR GCA 90 bp TGGCTGTGGGGTCCACAGAGCTCTTGTTCCCAGTGGCCATCACTTTCCTCTCTTTCCTCTGCATCTTCATaGGCCTGGCCTGGATGCGGC +
Preference number: 4 (lower is better)
Translates to: WLWGPQSSCSQWPSLSSLSSASS*AWPGCG
Trigger: GCCGCATCCAGGCCAGGCGCATGAAGATGCAGAGGA...AAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTGGACCCCACAGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp ACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACCCCATCTCCTCTGCATCTTCATaGGCCTGGCCTGGATGCGGC +
Preference number: 4 (lower is better)
Translates to: TVSFFRVLRSCCFLQDPISSASS*AWPGCG
Trigger: GCCGCATCCAGGCCAGGCGCATGAAGATGCAGAGGA...GATGGGGTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp AGACTTCAACAGGGAGGAGGCAGCACTGCATGTTGCCATGGTGACGGTCAAAGCAGGGCGGCTATCCTCTaGATCTTCATGCGCCTGGCC +
Preference number: 4 (lower is better)
Translates to: RLQQGGGSTACCHGDGQSRAAIL*IFMRLA
Trigger: GGCCAGGCGCATGAAGATGCAGAGGATAGCCGCCCT...GCTTTGACCGTCACCATGGCAACATGCAGTGCTGCCTCCTCCCTGTTGAAGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp CTCTGGGACCTCCAGGTCAGGAGCTGTGGGACCTACTGGACCTTAGATCCCTCAGCAAACACAGAGCGTTaGACTGTCGGGTCACTGCTG +
Preference number: 4 (lower is better)
Translates to: LWDLQVRSCGTYWTLDPSANTER*TVGSLL
Trigger: CAGCAGTGACCCGACAGTGCAACGCTCTGTGTTTGC...TGAGGGATCTAAGGTCCAGTAGGTCCCACAGCTCCTGACCTGGAGGTCCCAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp CACAGAGCTCTTGTTCCCAGTGGCCATCACTTTCCTCTCTTCCCAGGGGCTAAGAAGGAGATGGTGGGCTaGTGGGCGGGAAGGAGGCTA +
Preference number: 4 (lower is better)
Translates to: HRALVPSGHHFPLFPGAKKEMVG*WAGRRL
Trigger: TAGCCTCCTTCCCGCCCAGCAGCCCACCATCTCCTT...CTTAGCCCCTGGGAAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp CACAGAGCTCTTGTTCCCAGTGGCCATCACTTTCCTCTCTTCCCAGGGGCTAAGGGTCTCCGTATCTGCTaGAGGCAGTGTGGGGAGCTG +
Preference number: 4 (lower is better)
Translates to: HRALVPSGHHFPLFPGAKGLRIC*RQCGEL
Trigger: CAGCTCCCCACACTGCCTGCAGCAGATACGGAGACC...CTTAGCCCCTGGGAAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp GACGTGGCATGCATGGCCTGGGAGATGGGAGCAATGATTTTGGAGGCTGACTCTTGGGGTCTCCGTATCTaGTGCAGGCAGTGTGGGGAG +
Preference number: 4 (lower is better)
Translates to: DVACMAWEMGAMILEADSWGLRI*CRQCGE
Trigger: CTCCCCACACTGCCTGCAGCAGATACGGAGACCCCA...AGAGTCAGCCTCCAAAATCATTGCTCCCATCTCCCAGGCCATGCATGCCACGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp GAAGAGAGTCATTCATTCCCCCACCCGCCCCAGCCGGTGGCACCTTCTGCATATAGGTGGTCCAAGGAGTaGATGTTGCGGGAGGACTTG +
Preference number: 4 (lower is better)
Translates to: EESHSFPHPPQPVAPSAYRWSKE*MLREDL
Trigger: CAAGTCCTCCCGCAACATCCACTCCTTGGACCACCT...ATATGCAGAAGGTGCCACCGGCTGGGGCGGGTGGGGGAATGAATGACTCTCTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CCA 90 bp CTCTGGGACCTCCAGGTCAGGAGCTGTGGGACCTACTGGACCTTAGATCCCTCAAGGTGGTCCAAGGAGTaGATGTTGCGGGAGGACTTG +
Preference number: 4 (lower is better)
Translates to: LWDLQVRSCGTYWTLDPSRWSKE*MLREDL
Trigger: CAAGTCCTCCCGCAACATCCACTCCTTGGACCACCT...TGAGGGATCTAAGGTCCAGTAGGTCCCACAGCTCCTGACCTGGAGGTCCCAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp TCCGAGAACACGAAGGTGGCCTGCAGGATAGGGAAGGGCTTAGAGTGCGGGCTGACCGGATGCTGGGCTTaGCAGAACTTCTGGGAACAT +
Preference number: 4 (lower is better)
Translates to: SENTKVACRIGKGLECGLTGCWA*QNFWEH
Trigger: ATGTTCCCAGAAGTTCTGCCAAGCCCAGCATCCGGT...CAGCCCGCACTCTAAGCCCTTCCCTATCCTGCAGGCCACCTTCGTGTTCTCGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CCA 90 bp TGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCGGGAAGTCTTCTCCTCGTCTGTaGTGTTCTGCTCCTGCACTG +
Preference number: 4 (lower is better)
Translates to: CVSSVLVEQGDGGLLGGKSSPRL*CSAPAL
Trigger: CAGTGCAGGAGCAGAACACCACAGACGAGGAGAAGA...CTTCCCGCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115823.2
ENSMUST00000115828.9
CDS-3UTR CCA 90 bp GCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCAAGTCAATGCCAGTCAGTaGAGTGCCCGTTGGGGGCAG +
Preference number: 4 (lower is better)
Translates to: ATEKANAILRMQPAYSCQVNASQ*SARWGQ
Trigger: CTGCCCCCAACGGGCACTCCACTGACTGGCATTGAC...TTGGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp CCCTCTGGGAGCAACCTTAAAGCCAGCTGTGGGAACAGGCTTATTGTTGGTGAATTCATGCGCCTGGCCTaGATGCGGCCCTTGGCCAGG +
Preference number: 4 (lower is better)
Translates to: PSGSNLKASCGNRLIVGEFMRLA*MRPLAR
Trigger: CCTGGCCAAGGGCCGCATCCAGGCCAGGCGCATGAA...TTCACCAACAATAAGCCTGTTCCCACAGCTGGCTTTAAGGTTGCTCCCAGAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp ACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGACTTCTGTTGTCGGCTaGATTGGGAGGTCCAGAAGG +
Preference number: 4 (lower is better)
Translates to: TLGGKTKELPKGRCQWVLTSVVG*IGRSRR
Trigger: CCTTCTGGACCTCCCAATCCAGCCGACAACAGAAGT...CAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp AGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCCTGAGTCACAGTGGCTaGTGCTTCCACTGCCACCAG +
Preference number: 4 (lower is better)
Translates to: RPQRKPMPSLGCSQPTPALSHSG*CFHCHQ
Trigger: CTGGTGGCAGTGGAAGCACCAGCCACTGTGACTCAG...GGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp GACGTGGCATGCATGGCCTGGGAGATGGGAGCAATGATTTTGGAGGCTGACTCTAGAGCAAGGAGATGGTaGGCTGCTGGGCGGGAAGGA +
Preference number: 4 (lower is better)
Translates to: DVACMAWEMGAMILEADSRARRW*AAGREG
Trigger: TCCTTCCCGCCCAGCAGCCCACCATCTCCTTGCTCT...AGAGTCAGCCTCCAAAATCATTGCTCCCATCTCCCAGGCCATGCATGCCACGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp GGCTGGTGCTTCCACTGCCACCAGGGCTCCCACTGGCAAATGGTGGCGACGGTGGGACAGTGTGGTTGTTaGGCTTTAATGAAAGCGTTT +
Preference number: 4 (lower is better)
Translates to: GWCFHCHQGSHWQMVATVGQCGC*ALMKAF
Trigger: AAACGCTTTCATTAAAGCTCAACAACCACACTGTCC...CACCGTCGCCACCATTTGCCAGTGGGAGCCCTGGTGGCAGTGGAAGCACCAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR TCA 90 bp GGCTGGTGCTTCCACTGCCACCAGGGCTCCCACTGGCAAATGGTGGCGACGGTGTGTAGACATTCAAAGTaGTGGTTCTCACGGCAATTC +
Preference number: 4 (lower is better)
Translates to: GWCFHCHQGSHWQMVATVCRHSK*WFSRQF
Trigger: GAATTGCCGTGAGAACCATCACTTTGAATGTCTACA...CACCGTCGCCACCATTTGCCAGTGGGAGCCCTGGTGGCAGTGGAAGCACCAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR TCA 90 bp CAGCTCTCTCAGCCCCTGGACTTTCCACTGAATCTCTCTTTTAGGGAAGGGCAGCCCTCGCAGCTGCAGTaGCAGGGAACGCAGCATGAA +
Preference number: 4 (lower is better)
Translates to: QLSQPLDFPLNLSFREGQPSQLQ*QGTQHE
Trigger: TTCATGCTGCGTTCCCTGTCACTGCAGCTGCGAGGG...CTGCCCTTCCCTAAAAGAGAGATTCAGTGGAAAGTCCAGGGGCTGAGAGAGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR TCA 90 bp CCGAAGGCCTGTGGGTACTGGGACTTCCTCACTCATGGCTTCCCTTGTCAGGGGAGACATCATCTGTTTTaGTCAGGTCCTCCTCCCGAG +
Preference number: 4 (lower is better)
Translates to: PKACGYWDFLTHGFPCQGRHHLF*SGPPPE
Trigger: CTCGGGAGGAGGACCTGATCAAAACAGATGATGTCT...CCCCTGACAAGGGAAGCCATGAGTGAGGAAGTCCCAGTACCCACAGGCCTTCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR TCA 90 bp GTGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCGGGAAAGACATCATCTGTTTTaGTCAGGTCCTCCTCCCGAG +
Preference number: 4 (lower is better)
Translates to: VCQQCPRRARRWWAAGRERHHLF*SGPPPE
Trigger: CTCGGGAGGAGGACCTGATCAAAACAGATGATGTCT...TTCCCGCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR TCA 90 bp CAAGGAGATGGTGGGCTGCTGGGCGGGAAGGAGGCTAGGGGACAGGTGCATTGTATAATGCAGCGGATATaGTCCGAGAACACGAAGGTG +
Preference number: 4 (lower is better)
Translates to: QGDGGLLGGKEARGQVHCIMQRI*SENTKV
Trigger: CACCTTCGTGTTCTCGGATCATATCCGCTGCATTAT...ACAATGCACCTGTCCCCTAGCCTCCTTCCCGCCCAGCAGCCCACCATCTCCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR TCA 90 bp GGTGAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACAGAGGAAGAGCCTCCTaGGTCACAGTGGCTGGTGCT +
Preference number: 4 (lower is better)
Translates to: GETVSFFRVLRSCCFLQDRGRAS*VTVAGA
Trigger: AGCACCAGCCACTGTGACTCAGGAGGCTCTTCCTCT...GTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTCACC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp TGGCTGGTGCTTCCACTGCCACCAGGGCTCCCACTGGCAAATGGTGGCGACGGTTTTGCATCCGCTTCTTaGCCTTGTGCTTGTTCATCT +
Preference number: 4 (lower is better)
Translates to: WLVLPLPPGLPLANGGDGFASAS*PCACSS
Trigger: AGATGAACAAGCACAAGGGCAAGAAGCGGATGCAAA...ACCGTCGCCACCATTTGCCAGTGGGAGCCCTGGTGGCAGTGGAAGCACCAGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR GCA 90 bp AGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCTCGTCTGTGGTGTTCTaGTCCTGCACTGAGGTCCCA +
Preference number: 4 (lower is better)
Translates to: RPQRKPMPSLGCSQPTPASSVVF*SCTEVP
Trigger: TGGGACCTCAGTGCAGGAGCAGAACACCACAGACGA...GGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp TGCACGTCAGAGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTCGTCTGTGGTGTTCTaGTCCTGCACTGAGGTCCCA +
Preference number: 4 (lower is better)
Translates to: CTSEATEKANAILRMQPASSVVF*SCTEVP
Trigger: TGGGACCTCAGTGCAGGAGCAGAACACCACAGACGA...GGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCTCTGACGTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp ACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGTATCCAGGAAGGGTCTaGTCCACTGTGCATTCTCTG +
Preference number: 4 (lower is better)
Translates to: TLGGKTKELPKGRCQWVLYPGRV*STVHSL
Trigger: CAGAGAATGCACAGTGGAGCAGACCCTTCCTGGATA...CAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp TCCGAGAACACGAAGGTGGCCTGCAGGATAGGGAAGGGCTTAGAGTGCGGGCTGTATCCAGGAAGGGTCTaGTCCACTGTGCATTCTCTG +
Preference number: 4 (lower is better)
Translates to: SENTKVACRIGKGLECGLYPGRV*STVHSL
Trigger: CAGAGAATGCACAGTGGAGCAGACCCTTCCTGGATA...CAGCCCGCACTCTAAGCCCTTCCCTATCCTGCAGGCCACCTTCGTGTTCTCGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR GCA 90 bp AGCAAACTTGACCACTCCCCAGCCAAGTCTGGATACGTCAGGCTCCACCAGGCTCTGGTCAGTACTTGCTaGTTCAGGAGCAGGCAGCTC +
Preference number: 4 (lower is better)
Translates to: SKLDHSPAKSGYVRLHQALVSTC*FRSRQL
Trigger: GAGCTGCCTGCTCCTGAAGCAGCAAGTACTGACCAG...AGCCTGGTGGAGCCTGACGTATCCAGACTTGGCTGGGGAGTGGTCAAGTTTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR GCA 90 bp TGTGCACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCAAACAGGCCAGGTaGACATCCTTGATGACACAG +
Preference number: 4 (lower is better)
Translates to: CAHWEGRQRSCPKDGASGSKQAR*TSLMTQ
Trigger: CTGTGTCATCAAGGATGTGCACCTGGCCTGTTTGGA...CCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGTGCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp TCGGCTGGATTGGGAGGTCCAGAAGGGCGGCTATCCTCTGCATCTTCATGCGCCTCCAAACAGGCCAGGTaGACATCCTTGATGACACAG +
Preference number: 4 (lower is better)
Translates to: SAGLGGPEGRLSSASSCASKQAR*TSLMTQ
Trigger: CTGTGTCATCAAGGATGTGCACCTGGCCTGTTTGGA...GGCGCATGAAGATGCAGAGGATAGCCGCCCTTCTGGACCTCCCAATCCAGCCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR GCA 90 bp AAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGGGTGATGACTGTGCATaGAATCAAGTCACTGTTATT +
Preference number: 4 (lower is better)
Translates to: KELPKGRCQWVLPPAAVRGDDCA*NQVTVI
Trigger: AATAACAGTGACTTGATTGCATGCACAGTCATCACC...CCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp CTACACAGGAGGCCGTTTCTAGGATCCCAGCCTGCTCAGCGAGAGGTCAGAGCAAACACGAAGGTGGCCTaGAGGATAGGGAAGGGCTTA +
Preference number: 4 (lower is better)
Translates to: LHRRPFLGSQPAQREVRANTKVA*RIGKGL
Trigger: TAAGCCCTTCCCTATCCTGCAGGCCACCTTCGTGTT...TGCTCTGACCTCTCGCTGAGCAGGCTGGGATCCTAGAAACGGCCTCCTGTGTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp ACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGCCTAAGACTTCAACAGAGGGCGGCTATCCTCTaGATCTTCATGCGCCTGGCC +
Preference number: 4 (lower is better)
Translates to: TTLSLTCGKCPTCLRLQQRAAIL*IFMRLA
Trigger: GGCCAGGCGCATGAAGATGCAGAGGATAGCCGCCCT...CTGTTGAAGTCTTAGGCAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp AGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCGGTCACTGCTGCCTCTaGGGCACTGCTCATAGAAAC +
Preference number: 4 (lower is better)
Translates to: RPQRKPMPSLGCSQPTPAGHCCL*GTAHRN
Trigger: GTTTCTATGAGCAGTGCCGCAGAGGCAGCAGTGACC...GGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp CTTTCTCTTGGAAAACTGAGCATTGGGGCCTGCAGGGAAGTTAGCTTAGCAGAGGGCTGGTGCTTCCACTaGCACCAGGGCTCCCACTGG +
Preference number: 4 (lower is better)
Translates to: LSLGKLSIGACREVSLAEGWCFH*HQGSHW
Trigger: CCAGTGGGAGCCCTGGTGGCAGTGGAAGCACCAGCC...CTCTGCTAAGCTAACTTCCCTGCAGGCCCCAATGCTCAGTTTTCCAAGAGAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp AAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGACAGGGCAAAGTCATTaGTGTGCTCATTGTAAAAGA +
Preference number: 4 (lower is better)
Translates to: KELPKGRCQWVLPPAAVRTGQSH*CAHCKR
Trigger: TCTTTTACAATGAGCACACCAATGACTTTGCCCTGT...CCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp ATAGAGGGCGCTCACCACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGACCGGATGCTGGGCTTaGCAGAACTTCTGGGAACAT +
Preference number: 4 (lower is better)
Translates to: IEGAHHHTESDLWEVSHLTGCWA*QNFWEH
Trigger: ATGTTCCCAGAAGTTCTGCCAAGCCCAGCATCCGGT...CAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGTGGTGAGCGCCCTCTAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp CTCTGGGACCTCCAGGTCAGGAGCTGTGGGACCTACTGGACCTTAGATCCCTCACTCCACATCACCACATaGCAGCCGCTTCACAAAGTC +
Preference number: 4 (lower is better)
Translates to: LWDLQVRSCGTYWTLDPSLHITT*QPLHKV
Trigger: GACTTTGTGAAGCGGCTGCCATGTGGTGATGTGGAG...TGAGGGATCTAAGGTCCAGTAGGTCCCACAGCTCCTGACCTGGAGGTCCCAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp AGTTCTAGCCCTGAACGTGCAAGGGTTAAGAGCAGGGGAGAGCCTGGCCAGTTTCTCCTCCCGAGTCAGTaGCAACTGGGTCTCAGGTTC +
Preference number: 4 (lower is better)
Translates to: SSSPERARVKSRGEPGQFLLPSQ*QLGLRF
Trigger: GAACCTGAGACCCAGTTGCCACTGACTCGGGAGGAG...AAACTGGCCAGGCTCTCCCCTGCTCTTAACCCTTGCACGTTCAGGGCTAGAACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CCA 90 bp GACGTGGCATGCATGGCCTGGGAGATGGGAGCAATGATTTTGGAGGCTGACTCTCTCCTCCCGAGTCAGTaGCAACTGGGTCTCAGGTTC +
Preference number: 4 (lower is better)
Translates to: DVACMAWEMGAMILEADSLLPSQ*QLGLRF
Trigger: GAACCTGAGACCCAGTTGCCACTGACTCGGGAGGAG...AGAGTCAGCCTCCAAAATCATTGCTCCCATCTCCCAGGCCATGCATGCCACGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp AGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCACAGCCAGGAACCGCTaGACCATACCACCATCCTTG +
Preference number: 4 (lower is better)
Translates to: RPQRKPMPSLGCSQPTPATARNR*TIPPSL
Trigger: CAAGGATGGTGGTATGGTCCAGCGGTTCCTGGCTGT...GGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp AGACTTCAACAGGGAGGAGGCAGCACTGCATGTTGCCATGGTGACGGTCAAAGCCTCCCCAGCCAAGTCTaGATACGTCAGGCTCCACCA +
Preference number: 4 (lower is better)
Translates to: RLQQGGGSTACCHGDGQSLPSQV*IRQAPP
Trigger: TGGTGGAGCCTGACGTATCCAGACTTGGCTGGGGAG...GCTTTGACCGTCACCATGGCAACATGCAGTGCTGCCTCCTCCCTGTTGAAGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp GACGTGGCATGCATGGCCTGGGAGATGGGAGCAATGATTTTGGAGGCTGACTCTCTCCCCAGCCAAGTCTaGATACGTCAGGCTCCACCA +
Preference number: 4 (lower is better)
Translates to: DVACMAWEMGAMILEADSLPSQV*IRQAPP
Trigger: TGGTGGAGCCTGACGTATCCAGACTTGGCTGGGGAG...AGAGTCAGCCTCCAAAATCATTGCTCCCATCTCCCAGGCCATGCATGCCACGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp TGTAGGGAGAGGTATGAGGGGCAGTTTTCAGGGCCACGGAGAATTGTGGGTGCTGGCCACAGCAAAGCCTaGCACCTTGTCTACGGATGC +
Preference number: 4 (lower is better)
Translates to: CRERYEGQFSGPRRIVGAGHSKA*HLVYGC
Trigger: GCATCCGTAGACAAGGTGCCAGGCTTTGCTGTGGCC...AGCACCCACAATTCTCCGTGGCCCTGAAAACTGCCCCTCATACCTCTCCCTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp CACAGAGCTCTTGTTCCCAGTGGCCATCACTTTCCTCTCTTCCCAGGGGCTAAGGGCCACAGCAAAGCCTaGCACCTTGTCTACGGATGC +
Preference number: 4 (lower is better)
Translates to: HRALVPSGHHFPLFPGAKGHSKA*HLVYGC
Trigger: GCATCCGTAGACAAGGTGCCAGGCTTTGCTGTGGCC...CTTAGCCCCTGGGAAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp GTGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCGGGAAGATGGAGAGCTATGCTaGTTTATGCACTGGGCCACA +
Preference number: 4 (lower is better)
Translates to: VCQQCPRRARRWWAAGREDGELC*FMHWAT
Trigger: TGTGGCCCAGTGCATAAACCAGCATAGCTCTCCATC...TTCCCGCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR CCA 90 bp ACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGCCTAAGACTTCAACAGAGGCTGAGGCTGTTCTaGAGTCGTGGGGGCATCTGC +
Preference number: 4 (lower is better)
Translates to: TTLSLTCGKCPTCLRLQQRLRLF*SRGGIC
Trigger: GCAGATGCCCCCACGACTCCAGAACAGCCTCAGCCT...CTGTTGAAGTCTTAGGCAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp ACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGCCTAAGACTTCAACAGGGGTTCCGCAGGCTCTaGGTTTACAGCACCCTCAGC +
Preference number: 4 (lower is better)
Translates to: TTLSLTCGKCPTCLRLQQGFRRL*VYSTLS
Trigger: GCTGAGGGTGCTGTAAACCCAGAGCCTGCGGAACCC...CTGTTGAAGTCTTAGGCAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CAA 72 bp CCTGTCACCTGCATGTCCTGTAGAAGGCCAGCAAACTaGACCACTCCCCAGCCAAGTCTGGATACGTCAGGC +
Preference number: 4 (lower is better)
Translates to: PVTCMSCRRPAN*TTPQPSLDTSG
Trigger: GCCTGACGTATCCAGACTTGGCTGGGGAGTGGTCAAGTTTGCTGGCCTTCTACAGGACATGCAGGTGACAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR TCA 90 bp GCAGGTGCTGGGAGGAGGAGGAGGAGGAGCAGAGTCCAAATCCCAGGACTTCTGGCGATGTCTCGTGGCTaGTGTTCTCAAAGAGAATGT +
Preference number: 4 (lower is better)
Translates to: AGAGRRRRRSRVQIPGLLAMSRG*CSQREC
Trigger: ACATTCTCTTTGAGAACATCAGCCACGAGACATCGC...CAGAAGTCCTGGGATTTGGACTCTGCTCCTCCTCCTCCTCCTCCCAGCACCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR TCA 90 bp CAGTGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCGGGACCATGCTTTCGGGATaGTTGAAGAACTTGATGGCT +
Preference number: 4 (lower is better)
Translates to: QCVSSVLVEQGDGGLLGGTMLSG*LKNLMA
Trigger: AGCCATCAAGTTCTTCAATCATCCCGAAAGCATGGT...CCCGCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR TCA 90 bp GTGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCGGGAATCACATGGCTCCCAATaGACCAGACCAAATTGGAGA +
Preference number: 4 (lower is better)
Translates to: VCQQCPRRARRWWAAGRESHGSQ*TRPNWR
Trigger: TCTCCAATTTGGTCTGGTTCATTGGGAGCCATGTGA...TTCCCGCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR TCA 90 bp TGCACGTCAGAGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTTCACCAGCGGGGCGTaGTGTATAATGAGGAAGACC +
Preference number: 4 (lower is better)
Translates to: CTSEATEKANAILRMQPAFTSGA*CIMRKT
Trigger: GGTCTTCCTCATTATACATCACGCCCCGCTGGTGAA...GGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCTCTGACGTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp CTACACAGGAGGCCGTTTCTAGGATCCCAGCCTGCTCAGCGAGAGGTCAGAGCAATCCTGCCATCTGGCTaGGCAGCATTGTTCATGATC +
Preference number: 4 (lower is better)
Translates to: LHRRPFLGSQPAQREVRAILPSG*AALFMI
Trigger: GATCATGAACAATGCTGCTCAGCCAGATGGCAGGAT...TGCTCTGACCTCTCGCTGAGCAGGCTGGGATCCTAGAAACGGCCTCCTGTGTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp ACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGCCTAAGACTTCAACAGACAGGGAACGCAGCATaGAGAATACCCGGATGGCCC +
Preference number: 4 (lower is better)
Translates to: TTLSLTCGKCPTCLRLQQTGNAA*RIPGWP
Trigger: GGGCCATCCGGGTATTCTTCATGCTGCGTTCCCTGT...CTGTTGAAGTCTTAGGCAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp CTACACAGGAGGCCGTTTCTAGGATCCCAGCCTGCTCAGCGAGAGGTCAGAGCAAGACATCATCTGTTTTaGTCAGGTCCTCCTCCCGAG +
Preference number: 4 (lower is better)
Translates to: LHRRPFLGSQPAQREVRARHHLF*SGPPPE
Trigger: CTCGGGAGGAGGACCTGATCAAAACAGATGATGTCT...TGCTCTGACCTCTCGCTGAGCAGGCTGGGATCCTAGAAACGGCCTCCTGTGTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp GACGTGGCATGCATGGCCTGGGAGATGGGAGCAATGATTTTGGAGGCTGACTCTCAGGCTTGTGAATGGTaGTGTTCAGGGCACGGCTGT +
Preference number: 4 (lower is better)
Translates to: DVACMAWEMGAMILEADSQACEW*CSGHGC
Trigger: ACAGCCGTGCCCTGAACATCACCATTCACAAGCCTG...AGAGTCAGCCTCCAAAATCATTGCTCCCATCTCCCAGGCCATGCATGCCACGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp CAAATGAGTGCTTGGTGGTTGTCTTGTAGGGAGAGGTATGAGGGGCAGTTTTCACGGGCTCTGGGTTGCTaGGGGTGCAGAGGAAGAGCC +
Preference number: 4 (lower is better)
Translates to: QMSAWWLSCRERYEGQFSRALGC*GCRGRA
Trigger: GGCTCTTCCTCTGCACCCTCAGCAACCCAGAGCCCG...TGAAAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp ACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGCCTAAGACTTCAACAGTGCAGGTGGTCCAAGTaGTCAGCCACCAGGTCACTC +
Preference number: 4 (lower is better)
Translates to: TTLSLTCGKCPTCLRLQQCRWSK*SATRSL
Trigger: GAGTGACCTGGTGGCTGAGCACTTGGACCACCTGCA...CTGTTGAAGTCTTAGGCAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp CCCTCTGGGAGCAACCTTAAAGCCAGCTGTGGGAACAGGCTTATTGTTGGTGAAGTGGTGTTCTGCTCCTaGACTGAGGTCCCAGCAGCG +
Preference number: 4 (lower is better)
Translates to: PSGSNLKASCGNRLIVGEVVFCS*TEVPAA
Trigger: CGCTGCTGGGACCTCAGTGCAGGAGCAGAACACCAC...TTCACCAACAATAAGCCTGTTCCCACAGCTGGCTTTAAGGTTGCTCCCAGAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp GGTGAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACTCGTCTGTGGTGTTCTaGTCCTGCACTGAGGTCCCA +
Preference number: 4 (lower is better)
Translates to: GETVSFFRVLRSCCFLQDSSVVF*SCTEVP
Trigger: TGGGACCTCAGTGCAGGAGCAGAACACCACAGACGA...GTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp CTACACAGGAGGCCGTTTCTAGGATCCCAGCCTGCTCAGCGAGAGGTCAGAGCATATCCAGGAAGGGTCTaGTCCACTGTGCATTCTCTG +
Preference number: 4 (lower is better)
Translates to: LHRRPFLGSQPAQREVRAYPGRV*STVHSL
Trigger: CAGAGAATGCACAGTGGAGCAGACCCTTCCTGGATA...TGCTCTGACCTCTCGCTGAGCAGGCTGGGATCCTAGAAACGGCCTCCTGTGTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp TGCACGTCAGAGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTCCACTCCTGTCACCTaGATGTCCTGTAGAAGGCCA +
Preference number: 4 (lower is better)
Translates to: CTSEATEKANAILRMQPASTPVT*MSCRRP
Trigger: TGGCCTTCTACAGGACATGCAGGTGACAGGAGTGGA...GGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCTCTGACGTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp GACGTGGCATGCATGGCCTGGGAGATGGGAGCAATGATTTTGGAGGCTGACTCTGCAAACACAGAGCGTTaGACTGTCGGGTCACTGCTG +
Preference number: 4 (lower is better)
Translates to: DVACMAWEMGAMILEADSANTER*TVGSLL
Trigger: CAGCAGTGACCCGACAGTGCAACGCTCTGTGTTTGC...AGAGTCAGCCTCCAAAATCATTGCTCCCATCTCCCAGGCCATGCATGCCACGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp AGACTTCAACAGGGAGGAGGCAGCACTGCATGTTGCCATGGTGACGGTCAAAGCGCAAACACAGAGCGTTaGACTGTCGGGTCACTGCTG +
Preference number: 4 (lower is better)
Translates to: RLQQGGGSTACCHGDGQSANTER*TVGSLL
Trigger: CAGCAGTGACCCGACAGTGCAACGCTCTGTGTTTGC...GCTTTGACCGTCACCATGGCAACATGCAGTGCTGCCTCCTCCCTGTTGAAGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp ATAGAGGGCGCTCACCACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGAGCTATGCTGGTTTATaGACTGGGCCACAGCAAAGC +
Preference number: 4 (lower is better)
Translates to: IEGAHHHTESDLWEVSHLSYAGL*TGPQQS
Trigger: GCTTTGCTGTGGCCCAGTGCATAAACCAGCATAGCT...CAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGTGGTGAGCGCCCTCTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp CCCTCTGGGAGCAACCTTAAAGCCAGCTGTGGGAACAGGCTTATTGTTGGTGAAAAGGAGATGGTGGGCTaGTGGGCGGGAAGGAGGCTA +
Preference number: 4 (lower is better)
Translates to: PSGSNLKASCGNRLIVGEKEMVG*WAGRRL
Trigger: TAGCCTCCTTCCCGCCCAGCAGCCCACCATCTCCTT...TTCACCAACAATAAGCCTGTTCCCACAGCTGGCTTTAAGGTTGCTCCCAGAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp TTTCTGTCACGGACACTGGCTAATGGGTCTTTCTTGGATGAAGAGAGAAGGGAGTGGGGAGCTGGGAGATaGCAGAGAGGGCTCGGAGGC +
Preference number: 4 (lower is better)
Translates to: FLSRTLANGSFLDEERREWGAGR*QRGLGG
Trigger: GCCTCCGAGCCCTCTCTGGCATCTCCCAGCTCCCCA...CTCCCTTCTCTCTTCATCCAAGAAAGACCCATTAGCCAGTGTCCGTGACAGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp ACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACCCCATCAGGTGGTCCAAGGAGTaGATGTTGCGGGAGGACTTG +
Preference number: 4 (lower is better)
Translates to: TVSFFRVLRSCCFLQDPIRWSKE*MLREDL
Trigger: CAAGTCCTCCCGCAACATCCACTCCTTGGACCACCT...GATGGGGTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp CCGAAGGCCTGTGGGTACTGGGACTTCCTCACTCATGGCTTCCCTTGTCAGGGGTACAGGTACTTCAGGTaGTCCAAGGAGTGGATGTTG +
Preference number: 4 (lower is better)
Translates to: PKACGYWDFLTHGFPCQGYRYFR*SKEWML
Trigger: CAACATCCACTCCTTGGACCACCTGAAGTACCTGTA...CCCCTGACAAGGGAAGCCATGAGTGAGGAAGTCCCAGTACCCACAGGCCTTCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CCA 90 bp TCGGCTGGATTGGGAGGTCCAGAAGGGCGGCTATCCTCTGCATCTTCATGCGCCTACAGGTACTTCAGGTaGTCCAAGGAGTGGATGTTG +
Preference number: 4 (lower is better)
Translates to: SAGLGGPEGRLSSASSCAYRYFR*SKEWML
Trigger: CAACATCCACTCCTTGGACCACCTGAAGTACCTGTA...GGCGCATGAAGATGCAGAGGATAGCCGCCCTTCTGGACCTCCCAATCCAGCCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CCA 90 bp TGTGCACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCAAGTTCGATCACATaGCTCCCAATGAACCAGACC +
Preference number: 4 (lower is better)
Translates to: CAHWEGRQRSCPKDGASGSSSIT*LPMNQT
Trigger: GGTCTGGTTCATTGGGAGCCATGTGATCGAACTTGA...CCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGTGCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp TGCACGTCAGAGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCAGCCTGTTGAGCAGGTaGTCGGTGAGTACGTCATTG +
Preference number: 4 (lower is better)
Translates to: CTSEATEKANAILRMQPASLLSR*SVSTSL
Trigger: CAATGACGTACTCACCGACCACCTGCTCAACAGGCT...GGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCTCTGACGTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp TGCACGTCAGAGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCGCTTGGCAGAACTTCTaGGAACATCCTGTGCAGGCT +
Preference number: 4 (lower is better)
Translates to: CTSEATEKANAILRMQPAAWQNF*EHPVQA
Trigger: AGCCTGCACAGGATGTTCCCAGAAGTTCTGCCAAGC...GGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCTCTGACGTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp AGCAAACTTGACCACTCCCCAGCCAAGTCTGGATACGTCAGGCTCCACCAGGCTTCTTCTCCTCGTCTGTaGTGTTCTGCTCCTGCACTG +
Preference number: 4 (lower is better)
Translates to: SKLDHSPAKSGYVRLHQASSPRL*CSAPAL
Trigger: CAGTGCAGGAGCAGAACACCACAGACGAGGAGAAGA...AGCCTGGTGGAGCCTGACGTATCCAGACTTGGCTGGGGAGTGGTCAAGTTTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CCA 90 bp GGGATGGAGAGCTATGCTGGTTTATGCACTGGGCCACAGCAAAGCCTGGCACCTCCGGATCCTGCCATCTaGCTGAGCAGCATTGTTCAT +
Preference number: 4 (lower is better)
Translates to: GMESYAGLCTGPQQSLAPPDPAI*LSSIVH
Trigger: ATGAACAATGCTGCTCAGCCAGATGGCAGGATCCGG...AGGTGCCAGGCTTTGCTGTGGCCCAGTGCATAAACCAGCATAGCTCTCCATCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CCA 90 bp GTTCTAGCCCTGAACGTGCAAGGGTTAAGAGCAGGGGAGAGCCTGGCCAGTTTTACAGCCAGGAACCGCTaGACCATACCACCATCCTTG +
Preference number: 4 (lower is better)
Translates to: VLALNVQGLRAGESLASFTARNR*TIPPSL
Trigger: CAAGGATGGTGGTATGGTCCAGCGGTTCCTGGCTGT...AAAACTGGCCAGGCTCTCCCCTGCTCTTAACCCTTGCACGTTCAGGGCTAGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CCA 90 bp GACGTGGCATGCATGGCCTGGGAGATGGGAGCAATGATTTTGGAGGCTGACTCTTGCTGGTTTATGCACTaGGCCACAGCAAAGCCTGGC +
Preference number: 4 (lower is better)
Translates to: DVACMAWEMGAMILEADSCWFMH*ATAKPG
Trigger: GCCAGGCTTTGCTGTGGCCCAGTGCATAAACCAGCA...AGAGTCAGCCTCCAAAATCATTGCTCCCATCTCCCAGGCCATGCATGCCACGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp TGGCTGTGGGGTCCACAGAGCTCTTGTTCCCAGTGGCCATCACTTTCCTCTCTTTGCTGGTTTATGCACTaGGCCACAGCAAAGCCTGGC +
Preference number: 4 (lower is better)
Translates to: WLWGPQSSCSQWPSLSSLCWFMH*ATAKPG
Trigger: GCCAGGCTTTGCTGTGGCCCAGTGCATAAACCAGCA...AAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTGGACCCCACAGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp ACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGCCTAAGACTTCAACAGCTGAGTCACAGTGGCTaGTGCTTCCACTGCCACCAG +
Preference number: 4 (lower is better)
Translates to: TTLSLTCGKCPTCLRLQQLSHSG*CFHCHQ
Trigger: CTGGTGGCAGTGGAAGCACCAGCCACTGTGACTCAG...CTGTTGAAGTCTTAGGCAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CAA 72 bp CTGTGGGTACTGGGACTTCCTCACTCATGGCTTCCCTaGTCAGGGGACCAGGAACTGTATGCACTAGCTCCT +
Preference number: 4 (lower is better)
Translates to: LWVLGLPHSWLP*SGDQELYALAP
Trigger: AGGAGCTAGTGCATACAGTTCCTGGTCCCCTGACAAGGGAAGCCATGAGTGAGGAAGTCCCAGTACCCACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
3UTR CAA 72 bp AAACACCCAAGGTTGGCTGTGGGGTCCACAGAGCTCTaGTTCCCAGTGGCCATCACTTTCCTCTCTTCCCAG +
Preference number: 4 (lower is better)
Translates to: KHPRLAVGSTEL*FPVAITFLSSQ
Trigger: CTGGGAAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTGGACCCCACAGCCAACCTTGGGTGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp ATAGAGGGCGCTCACCACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGAAATCAGGATCTCAGTaGTGGAACGGATGGTCTCCA +
Preference number: 4 (lower is better)
Translates to: IEGAHHHTESDLWEVSHLKSGSQ*WNGWSP
Trigger: TGGAGACCATCCGTTCCATCACTGAGATCCTGATTT...CAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGTGGTGAGCGCCCTCTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp ATAGAGGGCGCTCACCACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGACAGAGCTGTCATTTTaGTCGCCCCAAATCAGGATC +
Preference number: 4 (lower is better)
Translates to: IEGAHHHTESDLWEVSHLTELSF*SPQIRI
Trigger: GATCCTGATTTGGGGCGATCAAAATGACAGCTCTGT...CAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGTGGTGAGCGCCCTCTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp AGGCCTGTGGGTACTGGGACTTCCTCACTCATGGCTTCCCTTGTCAGGGGACCAGCGATGTCTCGTGGCTaGTGTTCTCAAAGAGAATGT +
Preference number: 4 (lower is better)
Translates to: RPVGTGTSSLMASLVRGPAMSRG*CSQREC
Trigger: ACATTCTCTTTGAGAACATCAGCCACGAGACATCGC...TGGTCCCCTGACAAGGGAAGCCATGAGTGAGGAAGTCCCAGTACCCACAGGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR TCA 90 bp CTACACAGGAGGCCGTTTCTAGGATCCCAGCCTGCTCAGCGAGAGGTCAGAGCAGCGATGTCTCGTGGCTaGTGTTCTCAAAGAGAATGT +
Preference number: 4 (lower is better)
Translates to: LHRRPFLGSQPAQREVRAAMSRG*CSQREC
Trigger: ACATTCTCTTTGAGAACATCAGCCACGAGACATCGC...TGCTCTGACCTCTCGCTGAGCAGGCTGGGATCCTAGAAACGGCCTCCTGTGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp CACAGAGCTCTTGTTCCCAGTGGCCATCACTTTCCTCTCTTCCCAGGGGCTAAGTTCACCAGCGGGGCGTaGTGTATAATGAGGAAGACC +
Preference number: 4 (lower is better)
Translates to: HRALVPSGHHFPLFPGAKFTSGA*CIMRKT
Trigger: GGTCTTCCTCATTATACATCACGCCCCGCTGGTGAA...CTTAGCCCCTGGGAAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp TCAAATTACAAGAAAGTTCTAGCTTCCATTCCTCCCCTCAGGTTCAGTCCCCACGTTCTGCTCCTGCACTaGGGTCCCAGCAGCGGCCAC +
Preference number: 4 (lower is better)
Translates to: SNYKKVLASIPPLRFSPHVLLLH*GPSSGH
Trigger: GTGGCCGCTGCTGGGACCTCAGTGCAGGAGCAGAAC...GTGGGGACTGAACCTGAGGGGAGGAATGGAAGCTAGAACTTTCTTGTAATTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp GGGAAGAAGCCGAAGGCCTGTGGGTACTGGGACTTCCTCACTCATGGCTTCCCTTCCATGCCTTTGTTATaGGACATGGCATACAGGAGG +
Preference number: 4 (lower is better)
Translates to: GKKPKACGYWDFLTHGFPSMPLL*DMAYRR
Trigger: CCTCCTGTATGCCATGTCTCATAACAAAGGCATGGA...AGGGAAGCCATGAGTGAGGAAGTCCCAGTACCCACAGGCCTTCGGCTTCTTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR TCA 90 bp CTCTGGGACCTCCAGGTCAGGAGCTGTGGGACCTACTGGACCTTAGATCCCTCATCCATGCCTTTGTTATaGGACATGGCATACAGGAGG +
Preference number: 4 (lower is better)
Translates to: LWDLQVRSCGTYWTLDPSSMPLL*DMAYRR
Trigger: CCTCCTGTATGCCATGTCTCATAACAAAGGCATGGA...TGAGGGATCTAAGGTCCAGTAGGTCCCACAGCTCCTGACCTGGAGGTCCCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp GGGAAGAAGCCGAAGGCCTGTGGGTACTGGGACTTCCTCACTCATGGCTTCCCTATAATGCAGCGGATATaGTCCGAGAACACGAAGGTG +
Preference number: 4 (lower is better)
Translates to: GKKPKACGYWDFLTHGFPIMQRI*SENTKV
Trigger: CACCTTCGTGTTCTCGGATCATATCCGCTGCATTAT...AGGGAAGCCATGAGTGAGGAAGTCCCAGTACCCACAGGCCTTCGGCTTCTTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR TCA 90 bp TCAAATTACAAGAAAGTTCTAGCTTCCATTCCTCCCCTCAGGTTCAGTCCCCACCGGGCTCTGGGTTGCTaGGGGTGCAGAGGAAGAGCC +
Preference number: 4 (lower is better)
Translates to: SNYKKVLASIPPLRFSPHRALGC*GCRGRA
Trigger: GGCTCTTCCTCTGCACCCTCAGCAACCCAGAGCCCG...GTGGGGACTGAACCTGAGGGGAGGAATGGAAGCTAGAACTTTCTTGTAATTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp ATAGAGGGCGCTCACCACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGTGCTGGGCTTGGAGTTaGCATCCATTTCATTCCCAA +
Preference number: 4 (lower is better)
Translates to: IEGAHHHTESDLWEVSHLCWAWS*HPFHSQ
Trigger: TTGGGAATGAAATGGATGTCAACTCCAAGCCCAGCA...CAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGTGGTGAGCGCCCTCTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp CCCTCTGGGAGCAACCTTAAAGCCAGCTGTGGGAACAGGCTTATTGTTGGTGAAAGAGCTCCTGGCCGATaGGTTCTTGCTGGGCTTGGA +
Preference number: 4 (lower is better)
Translates to: PSGSNLKASCGNRLIVGERAPGR*VLAGLG
Trigger: TCCAAGCCCAGCAAGAACTCATCGGCCAGGAGCTCT...TTCACCAACAATAAGCCTGTTCCCACAGCTGGCTTTAAGGTTGCTCCCAGAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp CCTGAACGTGCAAGGGTTAAGAGCAGGGGAGAGCCTGGCCAGTTTTCTAAGATTTGCAGGTGGTCCAAGTaGTCAGCCACCAGGTCACTC +
Preference number: 4 (lower is better)
Translates to: PERARVKSRGEPGQFSKICRWSK*SATRSL
Trigger: GAGTGACCTGGTGGCTGAGCACTTGGACCACCTGCA...AATCTTAGAAAACTGGCCAGGCTCTCCCCTGCTCTTAACCCTTGCACGTTCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR GCA 90 bp GGTGAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACGACACTCTCTTCTCTTaGACCCTCCAAACAGGCCAG +
Preference number: 4 (lower is better)
Translates to: GETVSFFRVLRSCCFLQDDTLFS*TLQTGQ
Trigger: CTGGCCTGTTTGGAGGGTGCAAGAGAAGAGAGTGTC...GTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp CACAGAGCTCTTGTTCCCAGTGGCCATCACTTTCCTCTCTTCCCAGGGGCTAAGGACACTCTCTTCTCTTaGACCCTCCAAACAGGCCAG +
Preference number: 4 (lower is better)
Translates to: HRALVPSGHHFPLFPGAKDTLFS*TLQTGQ
Trigger: CTGGCCTGTTTGGAGGGTGCAAGAGAAGAGAGTGTC...CTTAGCCCCTGGGAAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp CAAATGAGTGCTTGGTGGTTGTCTTGTAGGGAGAGGTATGAGGGGCAGTTTTCATGCCAGTCAGTGGAGTaGCCGTTGGGGGCAGGAGGA +
Preference number: 4 (lower is better)
Translates to: QMSAWWLSCRERYEGQFSCQSVE*PLGAGG
Trigger: TCCTCCTGCCCCCAACGGGCACTCCACTGACTGGCA...TGAAAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp GGTGAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACTCCACTCCTGTCACCTaGATGTCCTGTAGAAGGCCA +
Preference number: 4 (lower is better)
Translates to: GETVSFFRVLRSCCFLQDSTPVT*MSCRRP
Trigger: TGGCCTTCTACAGGACATGCAGGTGACAGGAGTGGA...GTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTCACC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp AGACTTCAACAGGGAGGAGGCAGCACTGCATGTTGCCATGGTGACGGTCAAAGCAACACGAAGGTGGCCTaGAGGATAGGGAAGGGCTTA +
Preference number: 4 (lower is better)
Translates to: RLQQGGGSTACCHGDGQSNTKVA*RIGKGL
Trigger: TAAGCCCTTCCCTATCCTGCAGGCCACCTTCGTGTT...GCTTTGACCGTCACCATGGCAACATGCAGTGCTGCCTCCTCCCTGTTGAAGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp TGCACGTCAGAGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCAGCTATGCTGGTTTATaGACTGGGCCACAGCAAAGC +
Preference number: 4 (lower is better)
Translates to: CTSEATEKANAILRMQPASYAGL*TGPQQS
Trigger: GCTTTGCTGTGGCCCAGTGCATAAACCAGCATAGCT...GGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCTCTGACGTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp TGTAGGGAGAGGTATGAGGGGCAGTTTTCAGGGCCACGGAGAATTGTGGGTGCTAGGGATGGAGAGCTATaGTGGTTTATGCACTGGGCC +
Preference number: 4 (lower is better)
Translates to: CRERYEGQFSGPRRIVGARDGEL*WFMHWA
Trigger: GGCCCAGTGCATAAACCAGCATAGCTCTCCATCCCT...AGCACCCACAATTCTCCGTGGCCCTGAAAACTGCCCCTCATACCTCTCCCTACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp CTTTCTCTTGGAAAACTGAGCATTGGGGCCTGCAGGGAAGTTAGCTTAGCAGAGAAGGAGATGGTGGGCTaGTGGGCGGGAAGGAGGCTA +
Preference number: 4 (lower is better)
Translates to: LSLGKLSIGACREVSLAEKEMVG*WAGRRL
Trigger: TAGCCTCCTTCCCGCCCAGCAGCCCACCATCTCCTT...CTCTGCTAAGCTAACTTCCCTGCAGGCCCCAATGCTCAGTTTTCCAAGAGAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp CTTTCTCTTGGAAAACTGAGCATTGGGGCCTGCAGGGAAGTTAGCTTAGCAGAGGGTCTCCGTATCTGCTaGAGGCAGTGTGGGGAGCTG +
Preference number: 4 (lower is better)
Translates to: LSLGKLSIGACREVSLAEGLRIC*RQCGEL
Trigger: CAGCTCCCCACACTGCCTGCAGCAGATACGGAGACC...CTCTGCTAAGCTAACTTCCCTGCAGGCCCCAATGCTCAGTTTTCCAAGAGAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp AAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGAAGAAATGGACAGTGTaGTTGTTGAGCTTTAATGAA +
Preference number: 4 (lower is better)
Translates to: KELPKGRCQWVLPPAAVRKKWTV*LLSFNE
Trigger: TTCATTAAAGCTCAACAACCACACTGTCCATTTCTT...CCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp ACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACCCCATCAGCCTGTTGAGCAGGTaGTCGGTGAGTACGTCATTG +
Preference number: 4 (lower is better)
Translates to: TVSFFRVLRSCCFLQDPISLLSR*SVSTSL
Trigger: CAATGACGTACTCACCGACCACCTGCTCAACAGGCT...GATGGGGTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp TGGCACCTTGTCTACGGATGCAAACACAGAGCGTTGCACTGTCGGGTCACTGCTAGCCTGTTGAGCAGGTaGTCGGTGAGTACGTCATTG +
Preference number: 4 (lower is better)
Translates to: WHLVYGCKHRALHCRVTASLLSR*SVSTSL
Trigger: CAATGACGTACTCACCGACCACCTGCTCAACAGGCT...AGCAGTGACCCGACAGTGCAACGCTCTGTGTTTGCATCCGTAGACAAGGTGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CCA 90 bp GGTGAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACGCTTGGCAGAACTTCTaGGAACATCCTGTGCAGGCT +
Preference number: 4 (lower is better)
Translates to: GETVSFFRVLRSCCFLQDAWQNF*EHPVQA
Trigger: AGCCTGCACAGGATGTTCCCAGAAGTTCTGCCAAGC...GTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTCACC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp GCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCAAACCGGATGCTGGGCTTaGCAGAACTTCTGGGAACAT +
Preference number: 4 (lower is better)
Translates to: ATEKANAILRMQPAYSCQTGCWA*QNFWEH
Trigger: ATGTTCCCAGAAGTTCTGCCAAGCCCAGCATCCGGT...TTGGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp AGACTTCAACAGGGAGGAGGCAGCACTGCATGTTGCCATGGTGACGGTCAAAGCTCTTCTCCTCGTCTGTaGTGTTCTGCTCCTGCACTG +
Preference number: 4 (lower is better)
Translates to: RLQQGGGSTACCHGDGQSSSPRL*CSAPAL
Trigger: CAGTGCAGGAGCAGAACACCACAGACGAGGAGAAGA...GCTTTGACCGTCACCATGGCAACATGCAGTGCTGCCTCCTCCCTGTTGAAGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp GGTGAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACCCGGATCCTGCCATCTaGCTGAGCAGCATTGTTCAT +
Preference number: 4 (lower is better)
Translates to: GETVSFFRVLRSCCFLQDPDPAI*LSSIVH
Trigger: ATGAACAATGCTGCTCAGCCAGATGGCAGGATCCGG...GTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp CAAATGAGTGCTTGGTGGTTGTCTTGTAGGGAGAGGTATGAGGGGCAGTTTTCACAGTGGAGTGCCCGTTaGGGGCAGGAGGATGGAAGC +
Preference number: 4 (lower is better)
Translates to: QMSAWWLSCRERYEGQFSQWSAR*GQEDGS
Trigger: GCTTCCATCCTCCTGCCCCCAACGGGCACTCCACTG...TGAAAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp TTAGACCATGTCGAAGCAGGAAGGAGGCTGCTCTTCTTAAGAAGCAGCTCTCTCGTCAATGCCAGTCAGTaGAGTGCCCGTTGGGGGCAG +
Preference number: 4 (lower is better)
Translates to: LDHVEAGRRLLFLRSSSLVNASQ*SARWGQ
Trigger: CTGCCCCCAACGGGCACTCCACTGACTGGCATTGAC...GAGAGAGCTGCTTCTTAAGAAGAGCAGCCTCCTTCCTGCTTCGACATGGTCTAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CCA 90 bp CACAGAGCTCTTGTTCCCAGTGGCCATCACTTTCCTCTCTTCCCAGGGGCTAAGCTCCACATCACCACATaGCAGCCGCTTCACAAAGTC +
Preference number: 4 (lower is better)
Translates to: HRALVPSGHHFPLFPGAKLHITT*QPLHKV
Trigger: GACTTTGTGAAGCGGCTGCCATGTGGTGATGTGGAG...CTTAGCCCCTGGGAAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp GGTGAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACCTCCACATCACCACATaGCAGCCGCTTCACAAAGTC +
Preference number: 4 (lower is better)
Translates to: GETVSFFRVLRSCCFLQDLHITT*QPLHKV
Trigger: GACTTTGTGAAGCGGCTGCCATGTGGTGATGTGGAG...GTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGCCTGGATGCGGCCCTTaGCCAGGCGCTGCTTGGCAA +
Preference number: 4 (lower is better)
Translates to: TQPSVLENILSLTACPLEPGCGP*PGAAWQ
Trigger: TTGCCAAGCAGCGCCTGGCCAAGGGCCGCATCCAGG...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp TTTCTGTCACGGACACTGGCTAATGGGTCTTTCTTGGATGAAGAGAGAAGGGAGGCATCTTCATGCGCCTaGCCTGGATGCGGCCCTTGG +
Preference number: 4 (lower is better)
Translates to: FLSRTLANGSFLDEERREASSCA*PGCGPW
Trigger: CCAAGGGCCGCATCCAGGCCAGGCGCATGAAGATGC...CTCCCTTCTCTCTTCATCCAAGAAAGACCCATTAGCCAGTGTCCGTGACAGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp CTTTCTCTTGGAAAACTGAGCATTGGGGCCTGCAGGGAAGTTAGCTTAGCAGAGAGGCTGAGGCTGTTCTaGAGTCGTGGGGGCATCTGC +
Preference number: 4 (lower is better)
Translates to: LSLGKLSIGACREVSLAERLRLF*SRGGIC
Trigger: GCAGATGCCCCCACGACTCCAGAACAGCCTCAGCCT...CTCTGCTAAGCTAACTTCCCTGCAGGCCCCAATGCTCAGTTTTCCAAGAGAAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp CTTTCTCTTGGAAAACTGAGCATTGGGGCCTGCAGGGAAGTTAGCTTAGCAGAGAGAGCAAGGAGATGGTaGGCTGCTGGGCGGGAAGGA +
Preference number: 4 (lower is better)
Translates to: LSLGKLSIGACREVSLAERARRW*AAGREG
Trigger: TCCTTCCCGCCCAGCAGCCCACCATCTCCTTGCTCT...CTCTGCTAAGCTAACTTCCCTGCAGGCCCCAATGCTCAGTTTTCCAAGAGAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp CTTTCTCTTGGAAAACTGAGCATTGGGGCCTGCAGGGAAGTTAGCTTAGCAGAGGGGTTCCGCAGGCTCTaGGTTTACAGCACCCTCAGC +
Preference number: 4 (lower is better)
Translates to: LSLGKLSIGACREVSLAEGFRRL*VYSTLS
Trigger: GCTGAGGGTGCTGTAAACCCAGAGCCTGCGGAACCC...CTCTGCTAAGCTAACTTCCCTGCAGGCCCCAATGCTCAGTTTTCCAAGAGAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp AGGGCCCCAGACCCCTCTGAGGTGGCCAATGCCATCGTCTCTACACAGGAGGCCGGCCTGGTTATCCATTaGAACTTTGTAGACATTCAA +
Preference number: 4 (lower is better)
Translates to: RAPDPSEVANAIVSTQEAGLVIH*NFVDIQ
Trigger: TTGAATGTCTACAAAGTTCCAATGGATAACCAGGCC...GGCCTCCTGTGTAGAGACGATGGCATTGGCCACCTCAGAGGGGTCTGGGGCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115824.10
3UTR CAA 72 bp AGGATGCAGCCAGCCTACTCCTGCCAATGCAAGTGTTaGGTGGGTAGAGTAGCAGGTGAAGCCTCTTCACCA +
Preference number: 4 (lower is better)
Translates to: RMQPAYSCQCKC*VGRVAGEASSP
Trigger: TGGTGAAGAGGCTTCACCTGCTACTCTACCCACCAAACACTTGCATTGGCAGGAGTAGGCTGGCTGCATCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp CTACACAGGAGGCCGTTTCTAGGATCCCAGCCTGCTCAGCGAGAGGTCAGAGCAACCATGCTTTCGGGATaGTTGAAGAACTTGATGGCT +
Preference number: 4 (lower is better)
Translates to: LHRRPFLGSQPAQREVRATMLSG*LKNLMA
Trigger: AGCCATCAAGTTCTTCAATCATCCCGAAAGCATGGT...TGCTCTGACCTCTCGCTGAGCAGGCTGGGATCCTAGAAACGGCCTCCTGTGTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp ATAGAGGGCGCTCACCACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGACCATGCTTTCGGGATaGTTGAAGAACTTGATGGCT +
Preference number: 4 (lower is better)
Translates to: IEGAHHHTESDLWEVSHLTMLSG*LKNLMA
Trigger: AGCCATCAAGTTCTTCAATCATCCCGAAAGCATGGT...CAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGTGGTGAGCGCCCTCTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp ACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGCCTAAGACTTCAACAGCAGCGGTTTTGTCTCTaGTGTAGTGCAGCATGGCCT +
Preference number: 4 (lower is better)
Translates to: TTLSLTCGKCPTCLRLQQQRFCL*CSAAWP
Trigger: AGGCCATGCTGCACTACATCAGAGACAAAACCGCTG...CTGTTGAAGTCTTAGGCAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp CAGCTCTCTCAGCCCCTGGACTTTCCACTGAATCTCTCTTTTAGGGAAGGGCAGTTCACCAGCGGGGCGTaGTGTATAATGAGGAAGACC +
Preference number: 4 (lower is better)
Translates to: QLSQPLDFPLNLSFREGQFTSGA*CIMRKT
Trigger: GGTCTTCCTCATTATACATCACGCCCCGCTGGTGAA...CTGCCCTTCCCTAAAAGAGAGATTCAGTGGAAAGTCCAGGGGCTGAGAGAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR TCA 90 bp GGGAAGAAGCCGAAGGCCTGTGGGTACTGGGACTTCCTCACTCATGGCTTCCCTGATCACCATTCAGAATaGCTTCAGCCAGAGAGTTCA +
Preference number: 4 (lower is better)
Translates to: GKKPKACGYWDFLTHGFPDHHSE*LQPESS
Trigger: TGAACTCTCTGGCTGAAGTCATTCTGAATGGTGATC...AGGGAAGCCATGAGTGAGGAAGTCCCAGTACCCACAGGCCTTCGGCTTCTTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR TCA 90 bp GAGCTCCTGGCCGATGAGTTCTTGCTGGGCTTGGAGTTGACATCCATTTCATTCCAGGCTTGTGAATGGTaGTGTTCAGGGCACGGCTGT +
Preference number: 4 (lower is better)
Translates to: ELLADEFLLGLELTSISFQACEW*CSGHGC
Trigger: ACAGCCGTGCCCTGAACATCACCATTCACAAGCCTG...GAATGAAATGGATGTCAACTCCAAGCCCAGCAAGAACTCATCGGCCAGGAGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR TCA 90 bp CCCTCTGGGAGCAACCTTAAAGCCAGCTGTGGGAACAGGCTTATTGTTGGTGAACAGGCTTGTGAATGGTaGTGTTCAGGGCACGGCTGT +
Preference number: 4 (lower is better)
Translates to: PSGSNLKASCGNRLIVGEQACEW*CSGHGC
Trigger: ACAGCCGTGCCCTGAACATCACCATTCACAAGCCTG...TTCACCAACAATAAGCCTGTTCCCACAGCTGGCTTTAAGGTTGCTCCCAGAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp AGGCCTGTGGGTACTGGGACTTCCTCACTCATGGCTTCCCTTGTCAGGGGACCATTTGCATCCGCTTCTTaGCCTTGTGCTTGTTCATCT +
Preference number: 4 (lower is better)
Translates to: RPVGTGTSSLMASLVRGPFASAS*PCACSS
Trigger: AGATGAACAAGCACAAGGGCAAGAAGCGGATGCAAA...TGGTCCCCTGACAAGGGAAGCCATGAGTGAGGAAGTCCCAGTACCCACAGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR GCA 90 bp CTACACAGGAGGCCGTTTCTAGGATCCCAGCCTGCTCAGCGAGAGGTCAGAGCATTTGCATCCGCTTCTTaGCCTTGTGCTTGTTCATCT +
Preference number: 4 (lower is better)
Translates to: LHRRPFLGSQPAQREVRAFASAS*PCACSS
Trigger: AGATGAACAAGCACAAGGGCAAGAAGCGGATGCAAA...TGCTCTGACCTCTCGCTGAGCAGGCTGGGATCCTAGAAACGGCCTCCTGTGTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp GGTGAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACTATCCAGGAAGGGTCTaGTCCACTGTGCATTCTCTG +
Preference number: 4 (lower is better)
Translates to: GETVSFFRVLRSCCFLQDYPGRV*STVHSL
Trigger: CAGAGAATGCACAGTGGAGCAGACCCTTCCTGGATA...GTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp GTTCTAGCCCTGAACGTGCAAGGGTTAAGAGCAGGGGAGAGCCTGGCCAGTTTTTCCAAACAGGCCAGGTaGACATCCTTGATGACACAG +
Preference number: 4 (lower is better)
Translates to: VLALNVQGLRAGESLASFSKQAR*TSLMTQ
Trigger: CTGTGTCATCAAGGATGTGCACCTGGCCTGTTTGGA...AAAACTGGCCAGGCTCTCCCCTGCTCTTAACCCTTGCACGTTCAGGGCTAGAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR GCA 90 bp ACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGCCTAAGACTTCAACAGAACACGAAGGTGGCCTaGAGGATAGGGAAGGGCTTA +
Preference number: 4 (lower is better)
Translates to: TTLSLTCGKCPTCLRLQQNTKVA*RIGKGL
Trigger: TAAGCCCTTCCCTATCCTGCAGGCCACCTTCGTGTT...CTGTTGAAGTCTTAGGCAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp CAAATGAGTGCTTGGTGGTTGTCTTGTAGGGAGAGGTATGAGGGGCAGTTTTCACCCTTGGCCAGGCGCTaGTTGGCAATAATGCAGCGG +
Preference number: 4 (lower is better)
Translates to: QMSAWWLSCRERYEGQFSPLARR*LAIMQR
Trigger: CCGCTGCATTATTGCCAAGCAGCGCCTGGCCAAGGG...TGAAAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp CAAATGAGTGCTTGGTGGTTGTCTTGTAGGGAGAGGTATGAGGGGCAGTTTTCATCCTCTGCATCTTCATaGGCCTGGCCTGGATGCGGC +
Preference number: 4 (lower is better)
Translates to: QMSAWWLSCRERYEGQFSSSASS*AWPGCG
Trigger: GCCGCATCCAGGCCAGGCGCATGAAGATGCAGAGGA...TGAAAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp GACGTGGCATGCATGGCCTGGGAGATGGGAGCAATGATTTTGGAGGCTGACTCTAGCTATGCTGGTTTATaGACTGGGCCACAGCAAAGC +
Preference number: 4 (lower is better)
Translates to: DVACMAWEMGAMILEADSSYAGL*TGPQQS
Trigger: GCTTTGCTGTGGCCCAGTGCATAAACCAGCATAGCT...AGAGTCAGCCTCCAAAATCATTGCTCCCATCTCCCAGGCCATGCATGCCACGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp TTTCTGTCACGGACACTGGCTAATGGGTCTTTCTTGGATGAAGAGAGAAGGGAGTGGGGTCTCCGTATCTaGTGCAGGCAGTGTGGGGAG +
Preference number: 4 (lower is better)
Translates to: FLSRTLANGSFLDEERREWGLRI*CRQCGE
Trigger: CTCCCCACACTGCCTGCAGCAGATACGGAGACCCCA...CTCCCTTCTCTCTTCATCCAAGAAAGACCCATTAGCCAGTGTCCGTGACAGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp CAGTGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCGGGACAGGGCAAAGTCATTaGTGTGCTCATTGTAAAAGA +
Preference number: 4 (lower is better)
Translates to: QCVSSVLVEQGDGGLLGGTGQSH*CAHCKR
Trigger: TCTTTTACAATGAGCACACCAATGACTTTGCCCTGT...CCCGCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CCA 90 bp AGCAAACTTGACCACTCCCCAGCCAAGTCTGGATACGTCAGGCTCCACCAGGCTTCAAGTTCGATCACATaGCTCCCAATGAACCAGACC +
Preference number: 4 (lower is better)
Translates to: SKLDHSPAKSGYVRLHQASSSIT*LPMNQT
Trigger: GGTCTGGTTCATTGGGAGCCATGTGATCGAACTTGA...AGCCTGGTGGAGCCTGACGTATCCAGACTTGGCTGGGGAGTGGTCAAGTTTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CCA 90 bp ACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGCCTAAGACTTCAACAGACCGGATGCTGGGCTTaGCAGAACTTCTGGGAACAT +
Preference number: 4 (lower is better)
Translates to: TTLSLTCGKCPTCLRLQQTGCWA*QNFWEH
Trigger: ATGTTCCCAGAAGTTCTGCCAAGCCCAGCATCCGGT...CTGTTGAAGTCTTAGGCAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp CCGAAGGCCTGTGGGTACTGGGACTTCCTCACTCATGGCTTCCCTTGTCAGGGGCAACGTTTTTGTAGTTaGGTCTCTTTTGCATCCGCT +
Preference number: 4 (lower is better)
Translates to: PKACGYWDFLTHGFPCQGQRFCS*VSFASA
Trigger: AGCGGATGCAAAAGAGACCCAACTACAAAAACGTTG...CCCCTGACAAGGGAAGCCATGAGTGAGGAAGTCCCAGTACCCACAGGCCTTCGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CCA 90 bp GTGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCGGGAACAACGTTTTTGTAGTTaGGTCTCTTTTGCATCCGCT +
Preference number: 4 (lower is better)
Translates to: VCQQCPRRARRWWAAGREQRFCS*VSFASA
Trigger: AGCGGATGCAAAAGAGACCCAACTACAAAAACGTTG...TTCCCGCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CCA 90 bp ATGACAGGGATGGAGAGCTATGCTGGTTTATGCACTGGGCCACAGCAAAGCCTGCTCCACATCACCACATaGCAGCCGCTTCACAAAGTC +
Preference number: 4 (lower is better)
Translates to: MTGMESYAGLCTGPQQSLLHITT*QPLHKV
Trigger: GACTTTGTGAAGCGGCTGCCATGTGGTGATGTGGAG...CAGGCTTTGCTGTGGCCCAGTGCATAAACCAGCATAGCTCTCCATCCCTGTCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CCA 90 bp CTTTCTCTTGGAAAACTGAGCATTGGGGCCTGCAGGGAAGTTAGCTTAGCAGAGCTCCTCCCGAGTCAGTaGCAACTGGGTCTCAGGTTC +
Preference number: 4 (lower is better)
Translates to: LSLGKLSIGACREVSLAELLPSQ*QLGLRF
Trigger: GAACCTGAGACCCAGTTGCCACTGACTCGGGAGGAG...CTCTGCTAAGCTAACTTCCCTGCAGGCCCCAATGCTCAGTTTTCCAAGAGAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp CCCTCTGGGAGCAACCTTAAAGCCAGCTGTGGGAACAGGCTTATTGTTGGTGAATGCTGGTTTATGCACTaGGCCACAGCAAAGCCTGGC +
Preference number: 4 (lower is better)
Translates to: PSGSNLKASCGNRLIVGECWFMH*ATAKPG
Trigger: GCCAGGCTTTGCTGTGGCCCAGTGCATAAACCAGCA...TTCACCAACAATAAGCCTGTTCCCACAGCTGGCTTTAAGGTTGCTCCCAGAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp GACGTGGCATGCATGGCCTGGGAGATGGGAGCAATGATTTTGGAGGCTGACTCTGATGGAGAGCTATGCTaGTTTATGCACTGGGCCACA +
Preference number: 4 (lower is better)
Translates to: DVACMAWEMGAMILEADSDGELC*FMHWAT
Trigger: TGTGGCCCAGTGCATAAACCAGCATAGCTCTCCATC...AGAGTCAGCCTCCAAAATCATTGCTCCCATCTCCCAGGCCATGCATGCCACGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGCACCAGGGCTCCCACTaGCAAATGGTGGCGACGGTG +
Preference number: 4 (lower is better)
Translates to: TQPSVLENILSLTACPLEHQGSH*QMVATV
Trigger: CACCGTCGCCACCATTTGCCAGTGGGAGCCCTGGTG...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp TTTCTGTCACGGACACTGGCTAATGGGTCTTTCTTGGATGAAGAGAGAAGGGAGAGGCTGAGGCTGTTCTaGAGTCGTGGGGGCATCTGC +
Preference number: 4 (lower is better)
Translates to: FLSRTLANGSFLDEERRERLRLF*SRGGIC
Trigger: GCAGATGCCCCCACGACTCCAGAACAGCCTCAGCCT...CTCCCTTCTCTCTTCATCCAAGAAAGACCCATTAGCCAGTGTCCGTGACAGAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp GGTGAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACAAATCAGGATCTCAGTaGTGGAACGGATGGTCTCCA +
Preference number: 4 (lower is better)
Translates to: GETVSFFRVLRSCCFLQDKSGSQ*WNGWSP
Trigger: TGGAGACCATCCGTTCCATCACTGAGATCCTGATTT...GTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp ATGCTGGTTTATGCACTGGGCCACAGCAAAGCCTGGCACCTTGTCTACGGATGCAAATCAGGATCTCAGTaGTGGAACGGATGGTCTCCA +
Preference number: 4 (lower is better)
Translates to: MLVYALGHSKAWHLVYGCKSGSQ*WNGWSP
Trigger: TGGAGACCATCCGTTCCATCACTGAGATCCTGATTT...GCATCCGTAGACAAGGTGCCAGGCTTTGCTGTGGCCCAGTGCATAAACCAGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR TCA 90 bp GACGTGGCATGCATGGCCTGGGAGATGGGAGCAATGATTTTGGAGGCTGACTCTTCACATGGCTCCCAATaGACCAGACCAAATTGGAGA +
Preference number: 4 (lower is better)
Translates to: DVACMAWEMGAMILEADSSHGSQ*TRPNWR
Trigger: TCTCCAATTTGGTCTGGTTCATTGGGAGCCATGTGA...AGAGTCAGCCTCCAAAATCATTGCTCCCATCTCCCAGGCCATGCATGCCACGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp GGTGAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACTCACATGGCTCCCAATaGACCAGACCAAATTGGAGA +
Preference number: 4 (lower is better)
Translates to: GETVSFFRVLRSCCFLQDSHGSQ*TRPNWR
Trigger: TCTCCAATTTGGTCTGGTTCATTGGGAGCCATGTGA...GTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp TGCACGTCAGAGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCGATCACCATTCAGAATaGCTTCAGCCAGAGAGTTCA +
Preference number: 4 (lower is better)
Translates to: CTSEATEKANAILRMQPADHHSE*LQPESS
Trigger: TGAACTCTCTGGCTGAAGTCATTCTGAATGGTGATC...GGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCTCTGACGTGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp GGGCCACAGCAAAGCCTGGCACCTTGTCTACGGATGCAAACACAGAGCGTTGCAGCTTGCCAAGCTTCATaGTCACCATCTCAATCTCTT +
Preference number: 4 (lower is better)
Translates to: GPQQSLAPCLRMQTQSVAACQAS*SPSQSL
Trigger: AAGAGATTGAGATGGTGATCATGAAGCTTGGCAAGC...TGCAACGCTCTGTGTTTGCATCCGTAGACAAGGTGCCAGGCTTTGCTGTGGCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR TCA 90 bp ATGCTGGTTTATGCACTGGGCCACAGCAAAGCCTGGCACCTTGTCTACGGATGCTCCATGCCTTTGTTATaGGACATGGCATACAGGAGG +
Preference number: 4 (lower is better)
Translates to: MLVYALGHSKAWHLVYGCSMPLL*DMAYRR
Trigger: CCTCCTGTATGCCATGTCTCATAACAAAGGCATGGA...GCATCCGTAGACAAGGTGCCAGGCTTTGCTGTGGCCCAGTGCATAAACCAGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR TCA 90 bp AGACTTCAACAGGGAGGAGGCAGCACTGCATGTTGCCATGGTGACGGTCAAAGCTCCATGCCTTTGTTATaGGACATGGCATACAGGAGG +
Preference number: 4 (lower is better)
Translates to: RLQQGGGSTACCHGDGQSSMPLL*DMAYRR
Trigger: CCTCCTGTATGCCATGTCTCATAACAAAGGCATGGA...GCTTTGACCGTCACCATGGCAACATGCAGTGCTGCCTCCTCCCTGTTGAAGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp CAAATGAGTGCTTGGTGGTTGTCTTGTAGGGAGAGGTATGAGGGGCAGTTTTCAACAGGGAACGCAGCATaGAGAATACCCGGATGGCCC +
Preference number: 4 (lower is better)
Translates to: QMSAWWLSCRERYEGQFSTGNAA*RIPGWP
Trigger: GGGCCATCCGGGTATTCTTCATGCTGCGTTCCCTGT...TGAAAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp GACGTGGCATGCATGGCCTGGGAGATGGGAGCAATGATTTTGGAGGCTGACTCTATAATGCAGCGGATATaGTCCGAGAACACGAAGGTG +
Preference number: 4 (lower is better)
Translates to: DVACMAWEMGAMILEADSIMQRI*SENTKV
Trigger: CACCTTCGTGTTCTCGGATCATATCCGCTGCATTAT...AGAGTCAGCCTCCAAAATCATTGCTCCCATCTCCCAGGCCATGCATGCCACGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp CAAATGAGTGCTTGGTGGTTGTCTTGTAGGGAGAGGTATGAGGGGCAGTTTTCAAGAGGAAGAGCCTCCTaGGTCACAGTGGCTGGTGCT +
Preference number: 4 (lower is better)
Translates to: QMSAWWLSCRERYEGQFSRGRAS*VTVAGA
Trigger: AGCACCAGCCACTGTGACTCAGGAGGCTCTTCCTCT...TGAAAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp GACGTGGCATGCATGGCCTGGGAGATGGGAGCAATGATTTTGGAGGCTGACTCTTGCTGGGCTTGGAGTTaGCATCCATTTCATTCCCAA +
Preference number: 4 (lower is better)
Translates to: DVACMAWEMGAMILEADSCWAWS*HPFHSQ
Trigger: TTGGGAATGAAATGGATGTCAACTCCAAGCCCAGCA...AGAGTCAGCCTCCAAAATCATTGCTCCCATCTCCCAGGCCATGCATGCCACGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp AGCCTGGCCAGTTTTCTAAGATTTACAATCAAGAGAAGAGAGTCATTCATTCCCTGTTGCGGGAGGACTTaGTGTGGCCCCCGCCCACCC +
Preference number: 4 (lower is better)
Translates to: SLASFLRFTIKRRESFIPCCGRT*CGPRPP
Trigger: GGGTGGGCGGGGGCCACAGCAAGTCCTCCCGCAACA...GGGAATGAATGACTCTCTTCTCTTGATTGTAAATCTTAGAAAACTGGCCAGGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR GCA 90 bp TCTCTCTCATCTTGTTCAGAAGTACCTCAGTGTTTCAGGGAGAGACATCATCACTGCCAGTCAGTGGAGTaGCCGTTGGGGGCAGGAGGA +
Preference number: 4 (lower is better)
Translates to: SLSSCSEVPQCFRERHHHCQSVE*PLGAGG
Trigger: TCCTCCTGCCCCCAACGGGCACTCCACTGACTGGCA...GTGATGATGTCTCTCCCTGAAACACTGAGGTACTTCTGAACAAGATGAGAGAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp TGTGCACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGGGTGATGACTGTGCATaGAATCAAGTCACTGTTATT +
Preference number: 4 (lower is better)
Translates to: CAHWEGRQRSCPKDGASGGDDCA*NQVTVI
Trigger: AATAACAGTGACTTGATTGCATGCACAGTCATCACC...CCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGTGCACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp GAGCTCCTGGCCGATGAGTTCTTGCTGGGCTTGGAGTTGACATCCATTTCATTCAGGGATGGAGAGCTATaGTGGTTTATGCACTGGGCC +
Preference number: 4 (lower is better)
Translates to: ELLADEFLLGLELTSISFRDGEL*WFMHWA
Trigger: GGCCCAGTGCATAAACCAGCATAGCTCTCCATCCCT...GAATGAAATGGATGTCAACTCCAAGCCCAGCAAGAACTCATCGGCCAGGAGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR GCA 90 bp CCCTCTGGGAGCAACCTTAAAGCCAGCTGTGGGAACAGGCTTATTGTTGGTGAAAGGGATGGAGAGCTATaGTGGTTTATGCACTGGGCC +
Preference number: 4 (lower is better)
Translates to: PSGSNLKASCGNRLIVGERDGEL*WFMHWA
Trigger: GGCCCAGTGCATAAACCAGCATAGCTCTCCATCCCT...TTCACCAACAATAAGCCTGTTCCCACAGCTGGCTTTAAGGTTGCTCCCAGAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp TGGCTGTGGGGTCCACAGAGCTCTTGTTCCCAGTGGCCATCACTTTCCTCTCTTTACAGGTACTTCAGGTaGTCCAAGGAGTGGATGTTG +
Preference number: 4 (lower is better)
Translates to: WLWGPQSSCSQWPSLSSLYRYFR*SKEWML
Trigger: CAACATCCACTCCTTGGACCACCTGAAGTACCTGTA...AAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTGGACCCCACAGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp TGTAGGGAGAGGTATGAGGGGCAGTTTTCAGGGCCACGGAGAATTGTGGGTGCTTACAGGTACTTCAGGTaGTCCAAGGAGTGGATGTTG +
Preference number: 4 (lower is better)
Translates to: CRERYEGQFSGPRRIVGAYRYFR*SKEWML
Trigger: CAACATCCACTCCTTGGACCACCTGAAGTACCTGTA...AGCACCCACAATTCTCCGTGGCCCTGAAAACTGCCCCTCATACCTCTCCCTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp AGTTCTAGCCCTGAACGTGCAAGGGTTAAGAGCAGGGGAGAGCCTGGCCAGTTTTCAAGTTCGATCACATaGCTCCCAATGAACCAGACC +
Preference number: 4 (lower is better)
Translates to: SSSPERARVKSRGEPGQFSSSIT*LPMNQT
Trigger: GGTCTGGTTCATTGGGAGCCATGTGATCGAACTTGA...AAACTGGCCAGGCTCTCCCCTGCTCTTAACCCTTGCACGTTCAGGGCTAGAACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CCA 90 bp TGTAGGGAGAGGTATGAGGGGCAGTTTTCAGGGCCACGGAGAATTGTGGGTGCTTCAAGTTCGATCACATaGCTCCCAATGAACCAGACC +
Preference number: 4 (lower is better)
Translates to: CRERYEGQFSGPRRIVGASSSIT*LPMNQT
Trigger: GGTCTGGTTCATTGGGAGCCATGTGATCGAACTTGA...AGCACCCACAATTCTCCGTGGCCCTGAAAACTGCCCCTCATACCTCTCCCTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp GAGCTCCTGGCCGATGAGTTCTTGCTGGGCTTGGAGTTGACATCCATTTCATTCGCTTGGCAGAACTTCTaGGAACATCCTGTGCAGGCT +
Preference number: 4 (lower is better)
Translates to: ELLADEFLLGLELTSISFAWQNF*EHPVQA
Trigger: AGCCTGCACAGGATGTTCCCAGAAGTTCTGCCAAGC...GAATGAAATGGATGTCAACTCCAAGCCCAGCAAGAACTCATCGGCCAGGAGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CCA 90 bp CCTGAACGTGCAAGGGTTAAGAGCAGGGGAGAGCCTGGCCAGTTTTCTAAGATTTCTTCTCCTCGTCTGTaGTGTTCTGCTCCTGCACTG +
Preference number: 4 (lower is better)
Translates to: PERARVKSRGEPGQFSKISSPRL*CSAPAL
Trigger: CAGTGCAGGAGCAGAACACCACAGACGAGGAGAAGA...AATCTTAGAAAACTGGCCAGGCTCTCCCCTGCTCTTAACCCTTGCACGTTCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CCA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGCGAGTCAGTGGCAACTaGGTCTCAGGTTCCCCTCGC +
Preference number: 4 (lower is better)
Translates to: TQPSVLENILSLTACPLERVSGN*VSGSPR
Trigger: GCGAGGGGAACCTGAGACCCAGTTGCCACTGACTCG...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp CAAATGAGTGCTTGGTGGTTGTCTTGTAGGGAGAGGTATGAGGGGCAGTTTTCACTCCCCAGCCAAGTCTaGATACGTCAGGCTCCACCA +
Preference number: 4 (lower is better)
Translates to: QMSAWWLSCRERYEGQFSLPSQV*IRQAPP
Trigger: TGGTGGAGCCTGACGTATCCAGACTTGGCTGGGGAG...TGAAAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp TGGCTGTGGGGTCCACAGAGCTCTTGTTCCCAGTGGCCATCACTTTCCTCTCTTACCATGCTTTCGGGATaGTTGAAGAACTTGATGGCT +
Preference number: 4 (lower is better)
Translates to: WLWGPQSSCSQWPSLSSLTMLSG*LKNLMA
Trigger: AGCCATCAAGTTCTTCAATCATCCCGAAAGCATGGT...AAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTGGACCCCACAGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp TGTAGGGAGAGGTATGAGGGGCAGTTTTCAGGGCCACGGAGAATTGTGGGTGCTGCTTGCCAAGCTTCATaGTCACCATCTCAATCTCTT +
Preference number: 4 (lower is better)
Translates to: CRERYEGQFSGPRRIVGAACQAS*SPSQSL
Trigger: AAGAGATTGAGATGGTGATCATGAAGCTTGGCAAGC...AGCACCCACAATTCTCCGTGGCCCTGAAAACTGCCCCTCATACCTCTCCCTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp AGACTTCAACAGGGAGGAGGCAGCACTGCATGTTGCCATGGTGACGGTCAAAGCGCTTGCCAAGCTTCATaGTCACCATCTCAATCTCTT +
Preference number: 4 (lower is better)
Translates to: RLQQGGGSTACCHGDGQSACQAS*SPSQSL
Trigger: AAGAGATTGAGATGGTGATCATGAAGCTTGGCAAGC...GCTTTGACCGTCACCATGGCAACATGCAGTGCTGCCTCCTCCCTGTTGAAGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp ACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACCCCATCTGGAAGCATCCATCATaGGATACTCCACATTCATGG +
Preference number: 4 (lower is better)
Translates to: TVSFFRVLRSCCFLQDPIWKHPS*DTPHSW
Trigger: CCATGAATGTGGAGTATCTCATGATGGATGCTTCCA...GATGGGGTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp GCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCAATGGAAGCATCCATCATaGGATACTCCACATTCATGG +
Preference number: 4 (lower is better)
Translates to: ATEKANAILRMQPAYSCQWKHPS*DTPHSW
Trigger: CCATGAATGTGGAGTATCTCATGATGGATGCTTCCA...TTGGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp ATGCTGGTTTATGCACTGGGCCACAGCAAAGCCTGGCACCTTGTCTACGGATGCTGGAAGCATCCATCATaGGATACTCCACATTCATGG +
Preference number: 4 (lower is better)
Translates to: MLVYALGHSKAWHLVYGCWKHPS*DTPHSW
Trigger: CCATGAATGTGGAGTATCTCATGATGGATGCTTCCA...GCATCCGTAGACAAGGTGCCAGGCTTTGCTGTGGCCCAGTGCATAAACCAGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR TCA 90 bp ACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGCCTAAGACTTCAACAGATAATGCAGCGGATATaGTCCGAGAACACGAAGGTG +
Preference number: 4 (lower is better)
Translates to: TTLSLTCGKCPTCLRLQQIMQRI*SENTKV
Trigger: CACCTTCGTGTTCTCGGATCATATCCGCTGCATTAT...CTGTTGAAGTCTTAGGCAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp AGACTTCAACAGGGAGGAGGCAGCACTGCATGTTGCCATGGTGACGGTCAAAGCTTTGCATCCGCTTCTTaGCCTTGTGCTTGTTCATCT +
Preference number: 4 (lower is better)
Translates to: RLQQGGGSTACCHGDGQSFASAS*PCACSS
Trigger: AGATGAACAAGCACAAGGGCAAGAAGCGGATGCAAA...GCTTTGACCGTCACCATGGCAACATGCAGTGCTGCCTCCTCCCTGTTGAAGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp CCCTCTGGGAGCAACCTTAAAGCCAGCTGTGGGAACAGGCTTATTGTTGGTGAATCCAAACAGGCCAGGTaGACATCCTTGATGACACAG +
Preference number: 4 (lower is better)
Translates to: PSGSNLKASCGNRLIVGESKQAR*TSLMTQ
Trigger: CTGTGTCATCAAGGATGTGCACCTGGCCTGTTTGGA...TTCACCAACAATAAGCCTGTTCCCACAGCTGGCTTTAAGGTTGCTCCCAGAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGTGCGCCTGGCCTGGATaGGGCCCTTGGCCAGGCGCT +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRCAWPG*GPWPGA
Trigger: AGCGCCTGGCCAAGGGCCGCATCCAGGCCAGGCGCA...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR GCA 90 bp TTTCTGTCACGGACACTGGCTAATGGGTCTTTCTTGGATGAAGAGAGAAGGGAGGGTCACTGCTGCCTCTaGGGCACTGCTCATAGAAAC +
Preference number: 4 (lower is better)
Translates to: FLSRTLANGSFLDEERREGHCCL*GTAHRN
Trigger: GTTTCTATGAGCAGTGCCGCAGAGGCAGCAGTGACC...CTCCCTTCTCTCTTCATCCAAGAAAGACCCATTAGCCAGTGTCCGTGACAGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTACGGGAGGACTTGCTGTaGCCCCCGCCCACCCAGCTC +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLREDLL*PPPTQL
Trigger: GAGCTGGGTGGGCGGGGGCCACAGCAAGTCCTCCCG...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CCA 90 bp GGGAAGAAGCCGAAGGCCTGTGGGTACTGGGACTTCCTCACTCATGGCTTCCCTACAGGGCAAAGTCATTaGTGTGCTCATTGTAAAAGA +
Preference number: 4 (lower is better)
Translates to: GKKPKACGYWDFLTHGFPTGQSH*CAHCKR
Trigger: TCTTTTACAATGAGCACACCAATGACTTTGCCCTGT...AGGGAAGCCATGAGTGAGGAAGTCCCAGTACCCACAGGCCTTCGGCTTCTTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CCA 90 bp CTTTCTCTTGGAAAACTGAGCATTGGGGCCTGCAGGGAAGTTAGCTTAGCAGAGGCTTGGCAGAACTTCTaGGAACATCCTGTGCAGGCT +
Preference number: 4 (lower is better)
Translates to: LSLGKLSIGACREVSLAEAWQNF*EHPVQA
Trigger: AGCCTGCACAGGATGTTCCCAGAAGTTCTGCCAAGC...CTCTGCTAAGCTAACTTCCCTGCAGGCCCCAATGCTCAGTTTTCCAAGAGAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp ACCTTGTCTACGGATGCAAACACAGAGCGTTGCACTGTCGGGTCACTGCTGCCTCTTTGTTATGAGACATaGCATACAGGAGGCAGAGCA +
Preference number: 4 (lower is better)
Translates to: TLSTDANTERCTVGSLLPLCYET*HTGGRA
Trigger: TGCTCTGCCTCCTGTATGCCATGTCTCATAACAAAG...AGGCAGCAGTGACCCGACAGTGCAACGCTCTGTGTTTGCATCCGTAGACAAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CCA 90 bp GCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCAAGCAGATGGTTGTAGGTaGTTTTCTCAGCTTCACTTG +
Preference number: 4 (lower is better)
Translates to: ATEKANAILRMQPAYSCQADGCR*FSQLHL
Trigger: CAAGTGAAGCTGAGAAAACCACCTACAACCATCTGC...TTGGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp AGACTTCAACAGGGAGGAGGCAGCACTGCATGTTGCCATGGTGACGGTCAAAGCGCAGATGGTTGTAGGTaGTTTTCTCAGCTTCACTTG +
Preference number: 4 (lower is better)
Translates to: RLQQGGGSTACCHGDGQSADGCR*FSQLHL
Trigger: CAAGTGAAGCTGAGAAAACCACCTACAACCATCTGC...GCTTTGACCGTCACCATGGCAACATGCAGTGCTGCCTCCTCCCTGTTGAAGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp ACACTTAGACCATGTCGAAGCAGGAAGGAGGCTGCTCTTCTTAAGAAGCAGCTCCTCCACATCACCACATaGCAGCCGCTTCACAAAGTC +
Preference number: 4 (lower is better)
Translates to: TLRPCRSRKEAALLKKQLLHITT*QPLHKV
Trigger: GACTTTGTGAAGCGGCTGCCATGTGGTGATGTGGAG...GAGCTGCTTCTTAAGAAGAGCAGCCTCCTTCCTGCTTCGACATGGTCTAAGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CCA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGGGCCACAGCAAAGCCTaGCACCTTGTCTACGGATGC +
Preference number: 4 (lower is better)
Translates to: TQPSVLENILSLTACPLEGHSKA*HLVYGC
Trigger: GCATCCGTAGACAAGGTGCCAGGCTTTGCTGTGGCC...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CAA 72 bp CTCAGCGAGAGGTCAGAGCAAATGAGTGCTTGGTGGTaGTCTTGTAGGGAGAGGTATGAGGGGCAGTTTTCA +
Preference number: 4 (lower is better)
Translates to: LSERSEQMSAWW*SCRERYEGQFS
Trigger: TGAAAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTGCTCTGACCTCTCGCTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CAA 72 bp ACCTGTTTTGCAGCTGGGCCCCAGTTGGGCATCCACTaGCATCTTGGGAAGCAGATTATATCTGAGGATGAC +
Preference number: 4 (lower is better)
Translates to: TCFAAGPQLGIH*HLGKQIISEDD
Trigger: GTCATCCTCAGATATAATCTGCTTCCCAAGATGCAAGTGGATGCCCAACTGGGGCCCAGCTGCAAAACAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CAA 72 bp GAGCTCCTGGCCGATGAGTTCTTGCTGGGCTTGGAGTaGACATCCATTTCATTCCCAATCACTGACTGGTCT +
Preference number: 4 (lower is better)
Translates to: ELLADEFLLGLE*TSISFPITDWS
Trigger: AGACCAGTCAGTGATTGGGAATGAAATGGATGTCAACTCCAAGCCCAGCAAGAACTCATCGGCCAGGAGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115823.2
ENSMUST00000115828.9
CDS-3UTR TCA 90 bp GAGCTCCTGGCCGATGAGTTCTTGCTGGGCTTGGAGTTGACATCCATTTCATTCACAGAGCTGTCATTTTaGTCGCCCCAAATCAGGATC +
Preference number: 4 (lower is better)
Translates to: ELLADEFLLGLELTSISFTELSF*SPQIRI
Trigger: GATCCTGATTTGGGGCGATCAAAATGACAGCTCTGT...GAATGAAATGGATGTCAACTCCAAGCCCAGCAAGAACTCATCGGCCAGGAGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR TCA 90 bp CACAGAGCTCTTGTTCCCAGTGGCCATCACTTTCCTCTCTTCCCAGGGGCTAAGTGTAGACATTCAAAGTaGTGGTTCTCACGGCAATTC +
Preference number: 4 (lower is better)
Translates to: HRALVPSGHHFPLFPGAKCRHSK*WFSRQF
Trigger: GAATTGCCGTGAGAACCATCACTTTGAATGTCTACA...CTTAGCCCCTGGGAAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp TTTCTGTCACGGACACTGGCTAATGGGTCTTTCTTGGATGAAGAGAGAAGGGAGCAGCGGTTTTGTCTCTaGTGTAGTGCAGCATGGCCT +
Preference number: 4 (lower is better)
Translates to: FLSRTLANGSFLDEERREQRFCL*CSAAWP
Trigger: AGGCCATGCTGCACTACATCAGAGACAAAACCGCTG...CTCCCTTCTCTCTTCATCCAAGAAAGACCCATTAGCCAGTGTCCGTGACAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp TGCATGTCCTGTAGAAGGCCAGCAAACTTGACCACTCCCCAGCCAAGTCTGGATGATCACCATTCAGAATaGCTTCAGCCAGAGAGTTCA +
Preference number: 4 (lower is better)
Translates to: CMSCRRPANLTTPQPSLDDHHSE*LQPESS
Trigger: TGAACTCTCTGGCTGAAGTCATTCTGAATGGTGATC...ATCCAGACTTGGCTGGGGAGTGGTCAAGTTTGCTGGCCTTCTACAGGACATGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR TCA 90 bp CAGCTCTCTCAGCCCCTGGACTTTCCACTGAATCTCTCTTTTAGGGAAGGGCAGGCTTGCCAAGCTTCATaGTCACCATCTCAATCTCTT +
Preference number: 4 (lower is better)
Translates to: QLSQPLDFPLNLSFREGQACQAS*SPSQSL
Trigger: AAGAGATTGAGATGGTGATCATGAAGCTTGGCAAGC...CTGCCCTTCCCTAAAAGAGAGATTCAGTGGAAAGTCCAGGGGCTGAGAGAGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR TCA 90 bp ACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGCCTAAGACTTCAACAGGCTTGCCAAGCTTCATaGTCACCATCTCAATCTCTT +
Preference number: 4 (lower is better)
Translates to: TTLSLTCGKCPTCLRLQQACQAS*SPSQSL
Trigger: AAGAGATTGAGATGGTGATCATGAAGCTTGGCAAGC...CTGTTGAAGTCTTAGGCAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp TCTCTCTCATCTTGTTCAGAAGTACCTCAGTGTTTCAGGGAGAGACATCATCACACAGGGAACGCAGCATaGAGAATACCCGGATGGCCC +
Preference number: 4 (lower is better)
Translates to: SLSSCSEVPQCFRERHHHTGNAA*RIPGWP
Trigger: GGGCCATCCGGGTATTCTTCATGCTGCGTTCCCTGT...GTGATGATGTCTCTCCCTGAAACACTGAGGTACTTCTGAACAAGATGAGAGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTATGTTGCGGGAGGACTTaGTGTGGCCCCCGCCCACCC +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLCCGRT*CGPRPP
Trigger: GGGTGGGCGGGGGCCACAGCAAGTCCTCCCGCAACA...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR GCA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGTTCCCCCGATTCCGGTaGTCCTCATCTGTCTGCACA +
Preference number: 4 (lower is better)
Translates to: TQPSVLENILSLTACPLEFPRFR*SSSVCT
Trigger: TGTGCAGACAGATGAGGAGCACCGGAATCGGGGGAA...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp TCTCTCTCATCTTGTTCAGAAGTACCTCAGTGTTTCAGGGAGAGACATCATCACTGCAGGTGGTCCAAGTaGTCAGCCACCAGGTCACTC +
Preference number: 4 (lower is better)
Translates to: SLSSCSEVPQCFRERHHHCRWSK*SATRSL
Trigger: GAGTGACCTGGTGGCTGAGCACTTGGACCACCTGCA...GTGATGATGTCTCTCCCTGAAACACTGAGGTACTTCTGAACAAGATGAGAGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp CAGTTTTCTAAGATTTACAATCAAGAGAAGAGAGTCATTCATTCCCCCACCCGCGTGGTGTTCTGCTCCTaGACTGAGGTCCCAGCAGCG +
Preference number: 4 (lower is better)
Translates to: QFSKIYNQEKRVIHSPTRVVFCS*TEVPAA
Trigger: CGCTGCTGGGACCTCAGTGCAGGAGCAGAACACCAC...GCGGGTGGGGGAATGAATGACTCTCTTCTCTTGATTGTAAATCTTAGAAAACTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR GCA 90 bp CAAATGAGTGCTTGGTGGTTGTCTTGTAGGGAGAGGTATGAGGGGCAGTTTTCAGACACTCTCTTCTCTTaGACCCTCCAAACAGGCCAG +
Preference number: 4 (lower is better)
Translates to: QMSAWWLSCRERYEGQFSDTLFS*TLQTGQ
Trigger: CTGGCCTGTTTGGAGGGTGCAAGAGAAGAGAGTGTC...TGAAAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp AGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCGGTGATGACTGTGCATaGAATCAAGTCACTGTTATT +
Preference number: 4 (lower is better)
Translates to: RPQRKPMPSLGCSQPTPAGDDCA*NQVTVI
Trigger: AATAACAGTGACTTGATTGCATGCACAGTCATCACC...GGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp ATACACTTAGACCATGTCGAAGCAGGAAGGAGGCTGCTCTTCTTAAGAAGCAGCAACACGAAGGTGGCCTaGAGGATAGGGAAGGGCTTA +
Preference number: 4 (lower is better)
Translates to: IHLDHVEAGRRLLFLRSSNTKVA*RIGKGL
Trigger: TAAGCCCTTCCCTATCCTGCAGGCCACCTTCGTGTT...GCTGCTTCTTAAGAAGAGCAGCCTCCTTCCTGCTTCGACATGGTCTAAGTGTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CCA 90 bp TGCACGTCAGAGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCACAGGGCAAAGTCATTaGTGTGCTCATTGTAAAAGA +
Preference number: 4 (lower is better)
Translates to: CTSEATEKANAILRMQPATGQSH*CAHCKR
Trigger: TCTTTTACAATGAGCACACCAATGACTTTGCCCTGT...GGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCTCTGACGTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp ACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACCCCATCCAACGTTTTTGTAGTTaGGTCTCTTTTGCATCCGCT +
Preference number: 4 (lower is better)
Translates to: TVSFFRVLRSCCFLQDPIQRFCS*VSFASA
Trigger: AGCGGATGCAAAAGAGACCCAACTACAAAAACGTTG...GATGGGGTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp CAAATGAGTGCTTGGTGGTTGTCTTGTAGGGAGAGGTATGAGGGGCAGTTTTCATCTTCTCCTCGTCTGTaGTGTTCTGCTCCTGCACTG +
Preference number: 4 (lower is better)
Translates to: QMSAWWLSCRERYEGQFSSSPRL*CSAPAL
Trigger: CAGTGCAGGAGCAGAACACCACAGACGAGGAGAAGA...TGAAAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp ATGACAGGGATGGAGAGCTATGCTGGTTTATGCACTGGGCCACAGCAAAGCCTGGCAGATGGTTGTAGGTaGTTTTCTCAGCTTCACTTG +
Preference number: 4 (lower is better)
Translates to: MTGMESYAGLCTGPQQSLADGCR*FSQLHL
Trigger: CAAGTGAAGCTGAGAAAACCACCTACAACCATCTGC...CAGGCTTTGCTGTGGCCCAGTGCATAAACCAGCATAGCTCTCCATCCCTGTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CCA 90 bp CAAATGAGTGCTTGGTGGTTGTCTTGTAGGGAGAGGTATGAGGGGCAGTTTTCACCGGATCCTGCCATCTaGCTGAGCAGCATTGTTCAT +
Preference number: 4 (lower is better)
Translates to: QMSAWWLSCRERYEGQFSPDPAI*LSSIVH
Trigger: ATGAACAATGCTGCTCAGCCAGATGGCAGGATCCGG...TGAAAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp TCAAATTACAAGAAAGTTCTAGCTTCCATTCCTCCCCTCAGGTTCAGTCCCCACACAGCCAGGAACCGCTaGACCATACCACCATCCTTG +
Preference number: 4 (lower is better)
Translates to: SNYKKVLASIPPLRFSPHTARNR*TIPPSL
Trigger: CAAGGATGGTGGTATGGTCCAGCGGTTCCTGGCTGT...GTGGGGACTGAACCTGAGGGGAGGAATGGAAGCTAGAACTTTCTTGTAATTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp ATACACTTAGACCATGTCGAAGCAGGAAGGAGGCTGCTCTTCTTAAGAAGCAGCACTTCTGTTGTCGGCTaGATTGGGAGGTCCAGAAGG +
Preference number: 4 (lower is better)
Translates to: IHLDHVEAGRRLLFLRSSTSVVG*IGRSRR
Trigger: CCTTCTGGACCTCCCAATCCAGCCGACAACAGAAGT...GCTGCTTCTTAAGAAGAGCAGCCTCCTTCCTGCTTCGACATGGTCTAAGTGTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CCA 90 bp CTTTCTCTTGGAAAACTGAGCATTGGGGCCTGCAGGGAAGTTAGCTTAGCAGAGGATGGAGAGCTATGCTaGTTTATGCACTGGGCCACA +
Preference number: 4 (lower is better)
Translates to: LSLGKLSIGACREVSLAEDGELC*FMHWAT
Trigger: TGTGGCCCAGTGCATAAACCAGCATAGCTCTCCATC...CTCTGCTAAGCTAACTTCCCTGCAGGCCCCAATGCTCAGTTTTCCAAGAGAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CAA 72 bp GGTTTGCTTCTCCACAGGTTTCTACCCAGAGTAACCTaGTCCACTTCTGTGCACACTGGGAGGGAAGACAAA +
Preference number: 4 (lower is better)
Translates to: GLLLHRFLPRVT*STSVHTGREDK
Trigger: TTTGTCTTCCCTCCCAGTGTGCACAGAAGTGGACAAGGTTACTCTGGGTAGAAACCTGTGGAGAAGCAAACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CAA 72 bp TTGCAGCTGGGCCCCAGTTGGGCATCCACTTGCATCTaGGGAAGCAGATTATATCTGAGGATGACTTTCTGT +
Preference number: 4 (lower is better)
Translates to: LQLGPSWASTCI*GSRLYLRMTFC
Trigger: ACAGAAAGTCATCCTCAGATATAATCTGCTTCCCAAGATGCAAGTGGATGCCCAACTGGGGCCCAGCTGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp TTAGACCATGTCGAAGCAGGAAGGAGGCTGCTCTTCTTAAGAAGCAGCTCTCTCAAATCAGGATCTCAGTaGTGGAACGGATGGTCTCCA +
Preference number: 4 (lower is better)
Translates to: LDHVEAGRRLLFLRSSSLKSGSQ*WNGWSP
Trigger: TGGAGACCATCCGTTCCATCACTGAGATCCTGATTT...GAGAGAGCTGCTTCTTAAGAAGAGCAGCCTCCTTCCTGCTTCGACATGGTCTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR TCA 90 bp ACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGCCTAAGACTTCAACAGTGTAGACATTCAAAGTaGTGGTTCTCACGGCAATTC +
Preference number: 4 (lower is better)
Translates to: TTLSLTCGKCPTCLRLQQCRHSK*WFSRQF
Trigger: GAATTGCCGTGAGAACCATCACTTTGAATGTCTACA...CTGTTGAAGTCTTAGGCAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp ACACTTAGACCATGTCGAAGCAGGAAGGAGGCTGCTCTTCTTAAGAAGCAGCTCTCACATGGCTCCCAATaGACCAGACCAAATTGGAGA +
Preference number: 4 (lower is better)
Translates to: TLRPCRSRKEAALLKKQLSHGSQ*TRPNWR
Trigger: TCTCCAATTTGGTCTGGTTCATTGGGAGCCATGTGA...GAGCTGCTTCTTAAGAAGAGCAGCCTCCTTCCTGCTTCGACATGGTCTAAGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR TCA 90 bp CTGTTCACATATTCTGGAGCAAAAGGGACTTCTTCACATTCTATCAAATCTTGTGTTCTGCTCCTGCACTaGGGTCCCAGCAGCGGCCAC +
Preference number: 4 (lower is better)
Translates to: LFTYSGAKGTSSHSIKSCVLLLH*GPSSGH
Trigger: GTGGCCGCTGCTGGGACCTCAGTGCAGGAGCAGAAC...ACAAGATTTGATAGAATGTGAAGAAGTCCCTTTTGCTCCAGAATATGTGAACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR TCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAGTTCTGCTCCTGCACTaGGGTCCCAGCAGCGGCCAC +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLVLLLH*GPSSGH
Trigger: GTGGCCGCTGCTGGGACCTCAGTGCAGGAGCAGAAC...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR TCA 90 bp TTTCTGTCACGGACACTGGCTAATGGGTCTTTCTTGGATGAAGAGAGAAGGGAGATCCTGCCATCTGGCTaGGCAGCATTGTTCATGATC +
Preference number: 4 (lower is better)
Translates to: FLSRTLANGSFLDEERREILPSG*AALFMI
Trigger: GATCATGAACAATGCTGCTCAGCCAGATGGCAGGAT...CTCCCTTCTCTCTTCATCCAAGAAAGACCCATTAGCCAGTGTCCGTGACAGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp CAGTTTTCTAAGATTTACAATCAAGAGAAGAGAGTCATTCATTCCCCCACCCGCACAGGGAACGCAGCATaGAGAATACCCGGATGGCCC +
Preference number: 4 (lower is better)
Translates to: QFSKIYNQEKRVIHSPTRTGNAA*RIPGWP
Trigger: GGGCCATCCGGGTATTCTTCATGCTGCGTTCCCTGT...GCGGGTGGGGGAATGAATGACTCTCTTCTCTTGATTGTAAATCTTAGAAAACTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR TCA 90 bp CTTTCTCTTGGAAAACTGAGCATTGGGGCCTGCAGGGAAGTTAGCTTAGCAGAGTGCTGGGCTTGGAGTTaGCATCCATTTCATTCCCAA +
Preference number: 4 (lower is better)
Translates to: LSLGKLSIGACREVSLAECWAWS*HPFHSQ
Trigger: TTGGGAATGAAATGGATGTCAACTCCAAGCCCAGCA...CTCTGCTAAGCTAACTTCCCTGCAGGCCCCAATGCTCAGTTTTCCAAGAGAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp GTCACTGCTGCCTCTGCGGCACTGCTCATAGAAACGGAAAGGCAGGTGCTGGGAAAGAAATGGACAGTGTaGTTGTTGAGCTTTAATGAA +
Preference number: 4 (lower is better)
Translates to: VTAASAALLIETERQVLGKKWTV*LLSFNE
Trigger: TTCATTAAAGCTCAACAACCACACTGTCCATTTCTT...TCCCAGCACCTGCCTTTCCGTTTCTATGAGCAGTGCCGCAGAGGCAGCAGTGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CCA 90 bp GCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCAAACAGGGCAAAGTCATTaGTGTGCTCATTGTAAAAGA +
Preference number: 4 (lower is better)
Translates to: ATEKANAILRMQPAYSCQTGQSH*CAHCKR
Trigger: TCTTTTACAATGAGCACACCAATGACTTTGCCCTGT...TTGGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGAGCCTGTTGAGCAGGTaGTCGGTGAGTACGTCATTG +
Preference number: 4 (lower is better)
Translates to: TQPSVLENILSLTACPLESLLSR*SVSTSL
Trigger: CAATGACGTACTCACCGACCACCTGCTCAACAGGCT...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp CCCTCTGGGAGCAACCTTAAAGCCAGCTGTGGGAACAGGCTTATTGTTGGTGAACTTTGTTATGAGACATaGCATACAGGAGGCAGAGCA +
Preference number: 4 (lower is better)
Translates to: PSGSNLKASCGNRLIVGELCYET*HTGGRA
Trigger: TGCTCTGCCTCCTGTATGCCATGTCTCATAACAAAG...TTCACCAACAATAAGCCTGTTCCCACAGCTGGCTTTAAGGTTGCTCCCAGAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp GAGCTCCTGGCCGATGAGTTCTTGCTGGGCTTGGAGTTGACATCCATTTCATTCGCAGATGGTTGTAGGTaGTTTTCTCAGCTTCACTTG +
Preference number: 4 (lower is better)
Translates to: ELLADEFLLGLELTSISFADGCR*FSQLHL
Trigger: CAAGTGAAGCTGAGAAAACCACCTACAACCATCTGC...GAATGAAATGGATGTCAACTCCAAGCCCAGCAAGAACTCATCGGCCAGGAGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115823.2
ENSMUST00000115828.9
CDS-3UTR CCA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGCCGGATCCTGCCATCTaGCTGAGCAGCATTGTTCAT +
Preference number: 4 (lower is better)
Translates to: TQPSVLENILSLTACPLEPDPAI*LSSIVH
Trigger: ATGAACAATGCTGCTCAGCCAGATGGCAGGATCCGG...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp GTTCACATATTCTGGAGCAAAAGGGACTTCTTCACATTCTATCAAATCTTGTTGCCTGGATGCGGCCCTTaGCCAGGCGCTGCTTGGCAA +
Preference number: 4 (lower is better)
Translates to: VHIFWSKRDFFTFYQILLPGCGP*PGAAWQ
Trigger: TTGCCAAGCAGCGCCTGGCCAAGGGCCGCATCCAGG...CAACAAGATTTGATAGAATGTGAAGAAGTCCCTTTTGCTCCAGAATATGTGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTACCTGGATGCGGCCCTTaGCCAGGCGCTGCTTGGCAA +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLPGCGP*PGAAWQ
Trigger: TTGCCAAGCAGCGCCTGGCCAAGGGCCGCATCCAGG...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTATTCATGCGCCTGGCCTaGATGCGGCCCTTGGCCAGG +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLFMRLA*MRPLAR
Trigger: CCTGGCCAAGGGCCGCATCCAGGCCAGGCGCATGAA...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CCA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGACTTCTGTTGTCGGCTaGATTGGGAGGTCCAGAAGG +
Preference number: 4 (lower is better)
Translates to: TQPSVLENILSLTACPLETSVVG*IGRSRR
Trigger: CCTTCTGGACCTCCCAATCCAGCCGACAACAGAAGT...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp TTAGACCATGTCGAAGCAGGAAGGAGGCTGCTCTTCTTAAGAAGCAGCTCTCTCACCATGCTTTCGGGATaGTTGAAGAACTTGATGGCT +
Preference number: 4 (lower is better)
Translates to: LDHVEAGRRLLFLRSSSLTMLSG*LKNLMA
Trigger: AGCCATCAAGTTCTTCAATCATCCCGAAAGCATGGT...GAGAGAGCTGCTTCTTAAGAAGAGCAGCCTCCTTCCTGCTTCGACATGGTCTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR TCA 90 bp CCCTCTGGGAGCAACCTTAAAGCCAGCTGTGGGAACAGGCTTATTGTTGGTGAATGTAGACATTCAAAGTaGTGGTTCTCACGGCAATTC +
Preference number: 4 (lower is better)
Translates to: PSGSNLKASCGNRLIVGECRHSK*WFSRQF
Trigger: GAATTGCCGTGAGAACCATCACTTTGAATGTCTACA...TTCACCAACAATAAGCCTGTTCCCACAGCTGGCTTTAAGGTTGCTCCCAGAGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp CAAATGAGTGCTTGGTGGTTGTCTTGTAGGGAGAGGTATGAGGGGCAGTTTTCATCCATGCCTTTGTTATaGGACATGGCATACAGGAGG +
Preference number: 4 (lower is better)
Translates to: QMSAWWLSCRERYEGQFSSMPLL*DMAYRR
Trigger: CCTCCTGTATGCCATGTCTCATAACAAAGGCATGGA...TGAAAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGATCCTGCCATCTGGCTaGGCAGCATTGTTCATGATC +
Preference number: 4 (lower is better)
Translates to: TQPSVLENILSLTACPLEILPSG*AALFMI
Trigger: GATCATGAACAATGCTGCTCAGCCAGATGGCAGGAT...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGAGACATCATCTGTTTTaGTCAGGTCCTCCTCCCGAG +
Preference number: 4 (lower is better)
Translates to: TQPSVLENILSLTACPLERHHLF*SGPPPE
Trigger: CTCGGGAGGAGGACCTGATCAAAACAGATGATGTCT...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp TTTCTGTCACGGACACTGGCTAATGGGTCTTTCTTGGATGAAGAGAGAAGGGAGATAATGCAGCGGATATaGTCCGAGAACACGAAGGTG +
Preference number: 4 (lower is better)
Translates to: FLSRTLANGSFLDEERREIMQRI*SENTKV
Trigger: CACCTTCGTGTTCTCGGATCATATCCGCTGCATTAT...CTCCCTTCTCTCTTCATCCAAGAAAGACCCATTAGCCAGTGTCCGTGACAGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp ATACACTTAGACCATGTCGAAGCAGGAAGGAGGCTGCTCTTCTTAAGAAGCAGCCCCCACTTGTCTTCATaGTTTTTGAACCACCCTCTG +
Preference number: 4 (lower is better)
Translates to: IHLDHVEAGRRLLFLRSSPHLSS*FLNHPL
Trigger: CAGAGGGTGGTTCAAAAAGCATGAAGACAAGTGGGG...GCTGCTTCTTAAGAAGAGCAGCCTCCTTCCTGCTTCGACATGGTCTAAGTGTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR GCA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGTATCCAGGAAGGGTCTaGTCCACTGTGCATTCTCTG +
Preference number: 4 (lower is better)
Translates to: TQPSVLENILSLTACPLEYPGRV*STVHSL
Trigger: CAGAGAATGCACAGTGGAGCAGACCCTTCCTGGATA...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGTGCCAGTCAGTGGAGTaGCCGTTGGGGGCAGGAGGA +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRCQSVE*PLGAGG
Trigger: TCCTCCTGCCCCCAACGGGCACTCCACTGACTGGCA...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR GCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGGGTTCCCCTCGCAGCTaGAGTGACAGGGAACGCAGC +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRGSPRS*SDRERS
Trigger: GCTGCGTTCCCTGTCACTGCAGCTGCGAGGGGAACC...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CCA 90 bp TTTCTGTCACGGACACTGGCTAATGGGTCTTTCTTGGATGAAGAGAGAAGGGAGTACAGGTACTTCAGGTaGTCCAAGGAGTGGATGTTG +
Preference number: 4 (lower is better)
Translates to: FLSRTLANGSFLDEERREYRYFR*SKEWML
Trigger: CAACATCCACTCCTTGGACCACCTGAAGTACCTGTA...CTCCCTTCTCTCTTCATCCAAGAAAGACCCATTAGCCAGTGTCCGTGACAGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp ACACTTAGACCATGTCGAAGCAGGAAGGAGGCTGCTCTTCTTAAGAAGCAGCTCGCAGATGGTTGTAGGTaGTTTTCTCAGCTTCACTTG +
Preference number: 4 (lower is better)
Translates to: TLRPCRSRKEAALLKKQLADGCR*FSQLHL
Trigger: CAAGTGAAGCTGAGAAAACCACCTACAACCATCTGC...GAGCTGCTTCTTAAGAAGAGCAGCCTCCTTCCTGCTTCGACATGGTCTAAGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGCAGTGGAGTGCCCGTTaGGGGCAGGAGGATGGAAGC +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRQWSAR*GQEDGS
Trigger: GCTTCCATCCTCCTGCCCCCAACGGGCACTCCACTG...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGGCATCTTCATGCGCCTaGCCTGGATGCGGCCCTTGG +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRASSCA*PGCGPW
Trigger: CCAAGGGCCGCATCCAGGCCAGGCGCATGAAGATGC...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR TCA 90 bp TCAAATTACAAGAAAGTTCTAGCTTCCATTCCTCCCCTCAGGTTCAGTCCCCACACAGAGCTGTCATTTTaGTCGCCCCAAATCAGGATC +
Preference number: 4 (lower is better)
Translates to: SNYKKVLASIPPLRFSPHTELSF*SPQIRI
Trigger: GATCCTGATTTGGGGCGATCAAAATGACAGCTCTGT...GTGGGGACTGAACCTGAGGGGAGGAATGGAAGCTAGAACTTTCTTGTAATTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp TCAAATTACAAGAAAGTTCTAGCTTCCATTCCTCCCCTCAGGTTCAGTCCCCACTCCATGCCTTTGTTATaGGACATGGCATACAGGAGG +
Preference number: 4 (lower is better)
Translates to: SNYKKVLASIPPLRFSPHSMPLL*DMAYRR
Trigger: CCTCCTGTATGCCATGTCTCATAACAAAGGCATGGA...GTGGGGACTGAACCTGAGGGGAGGAATGGAAGCTAGAACTTTCTTGTAATTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp CAAATGAGTGCTTGGTGGTTGTCTTGTAGGGAGAGGTATGAGGGGCAGTTTTCATGGAAGCATCCATCATaGGATACTCCACATTCATGG +
Preference number: 4 (lower is better)
Translates to: QMSAWWLSCRERYEGQFSWKHPS*DTPHSW
Trigger: CCATGAATGTGGAGTATCTCATGATGGATGCTTCCA...TGAAAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTACCCTCGCAGCTGCAGTaGCAGGGAACGCAGCATGAA +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLPSQLQ*QGTQHE
Trigger: TTCATGCTGCGTTCCCTGTCACTGCAGCTGCGAGGG...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR TCA 90 bp TCTCTCTCATCTTGTTCAGAAGTACCTCAGTGTTTCAGGGAGAGACATCATCACAGACATCATCTGTTTTaGTCAGGTCCTCCTCCCGAG +
Preference number: 4 (lower is better)
Translates to: SLSSCSEVPQCFRERHHHRHHLF*SGPPPE
Trigger: CTCGGGAGGAGGACCTGATCAAAACAGATGATGTCT...GTGATGATGTCTCTCCCTGAAACACTGAGGTACTTCTGAACAAGATGAGAGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp TTTCTGTCACGGACACTGGCTAATGGGTCTTTCTTGGATGAAGAGAGAAGGGAGTTTGCATCCGCTTCTTaGCCTTGTGCTTGTTCATCT +
Preference number: 4 (lower is better)
Translates to: FLSRTLANGSFLDEERREFASAS*PCACSS
Trigger: AGATGAACAAGCACAAGGGCAAGAAGCGGATGCAAA...CTCCCTTCTCTCTTCATCCAAGAAAGACCCATTAGCCAGTGTCCGTGACAGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGGTGGTGTTCTGCTCCTaGACTGAGGTCCCAGCAGCG +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRVVFCS*TEVPAA
Trigger: CGCTGCTGGGACCTCAGTGCAGGAGCAGAACACCAC...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR GCA 90 bp CCTGAACGTGCAAGGGTTAAGAGCAGGGGAGAGCCTGGCCAGTTTTCTAAGATTGGTGATGACTGTGCATaGAATCAAGTCACTGTTATT +
Preference number: 4 (lower is better)
Translates to: PERARVKSRGEPGQFSKIGDDCA*NQVTVI
Trigger: AATAACAGTGACTTGATTGCATGCACAGTCATCACC...AATCTTAGAAAACTGGCCAGGCTCTCCCCTGCTCTTAACCCTTGCACGTTCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR GCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGCCCTTGGCCAGGCGCTaGTTGGCAATAATGCAGCGG +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRPLARR*LAIMQR
Trigger: CCGCTGCATTATTGCCAAGCAGCGCCTGGCCAAGGG...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR GCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTATCCTCTGCATCTTCATaGGCCTGGCCTGGATGCGGC +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLSSASS*AWPGCG
Trigger: GCCGCATCCAGGCCAGGCGCATGAAGATGCAGAGGA...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR GCA 90 bp ACTGTTCACATATTCTGGAGCAAAAGGGACTTCTTCACATTCTATCAAATCTTGAGGGCGGCTATCCTCTaGATCTTCATGCGCCTGGCC +
Preference number: 4 (lower is better)
Translates to: TVHIFWSKRDFFTFYQILRAAIL*IFMRLA
Trigger: GGCCAGGCGCATGAAGATGCAGAGGATAGCCGCCCT...CAAGATTTGATAGAATGTGAAGAAGTCCCTTTTGCTCCAGAATATGTGAACAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR GCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGGCGGCTATCCTCTaGATCTTCATGCGCCTGGCC +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLRAAIL*IFMRLA
Trigger: GGCCAGGCGCATGAAGATGCAGAGGATAGCCGCCCT...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CCA 90 bp AGTTCTAGCCCTGAACGTGCAAGGGTTAAGAGCAGGGGAGAGCCTGGCCAGTTTAAGAAATGGACAGTGTaGTTGTTGAGCTTTAATGAA +
Preference number: 4 (lower is better)
Translates to: SSSPERARVKSRGEPGQFKKWTV*LLSFNE
Trigger: TTCATTAAAGCTCAACAACCACACTGTCCATTTCTT...AAACTGGCCAGGCTCTCCCCTGCTCTTAACCCTTGCACGTTCAGGGCTAGAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CCA 90 bp AGACTTCAACAGGGAGGAGGCAGCACTGCATGTTGCCATGGTGACGGTCAAAGCAAGAAATGGACAGTGTaGTTGTTGAGCTTTAATGAA +
Preference number: 4 (lower is better)
Translates to: RLQQGGGSTACCHGDGQSKKWTV*LLSFNE
Trigger: TTCATTAAAGCTCAACAACCACACTGTCCATTTCTT...GCTTTGACCGTCACCATGGCAACATGCAGTGCTGCCTCCTCCCTGTTGAAGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp GGTGAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACAAGAAATGGACAGTGTaGTTGTTGAGCTTTAATGAA +
Preference number: 4 (lower is better)
Translates to: GETVSFFRVLRSCCFLQDKKWTV*LLSFNE
Trigger: TTCATTAAAGCTCAACAACCACACTGTCCATTTCTT...GTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTCACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGTCAAGTTCGATCACATaGCTCCCAATGAACCAGACC +
Preference number: 4 (lower is better)
Translates to: TQPSVLENILSLTACPLESSSIT*LPMNQT
Trigger: GGTCTGGTTCATTGGGAGCCATGTGATCGAACTTGA...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp CAGTTTTCTAAGATTTACAATCAAGAGAAGAGAGTCATTCATTCCCCCACCCGCACCGGATGCTGGGCTTaGCAGAACTTCTGGGAACAT +
Preference number: 4 (lower is better)
Translates to: QFSKIYNQEKRVIHSPTRTGCWA*QNFWEH
Trigger: ATGTTCCCAGAAGTTCTGCCAAGCCCAGCATCCGGT...GCGGGTGGGGGAATGAATGACTCTCTTCTCTTGATTGTAAATCTTAGAAAACTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CCA 90 bp TTTCTGTCACGGACACTGGCTAATGGGTCTTTCTTGGATGAAGAGAGAAGGGAGGCAGATGGTTGTAGGTaGTTTTCTCAGCTTCACTTG +
Preference number: 4 (lower is better)
Translates to: FLSRTLANGSFLDEERREADGCR*FSQLHL
Trigger: CAAGTGAAGCTGAGAAAACCACCTACAACCATCTGC...CTCCCTTCTCTCTTCATCCAAGAAAGACCCATTAGCCAGTGTCCGTGACAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp TGTTCACATATTCTGGAGCAAAAGGGACTTCTTCACATTCTATCAAATCTTGTTCAGTGGAGTGCCCGTTaGGGGCAGGAGGATGGAAGC +
Preference number: 4 (lower is better)
Translates to: CSHILEQKGLLHILSNLVQWSAR*GQEDGS
Trigger: GCTTCCATCCTCCTGCCCCCAACGGGCACTCCACTG...AACAAGATTTGATAGAATGTGAAGAAGTCCCTTTTGCTCCAGAATATGTGAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAGTCAATGCCAGTCAGTaGAGTGCCCGTTGGGGGCAG +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLVNASQ*SARWGQ
Trigger: CTGCCCCCAACGGGCACTCCACTGACTGGCATTGAC...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGCGAGTCAGTGGCAACTaGGTCTCAGGTTCCCCTCGC +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRRVSGN*VSGSPR
Trigger: GCGAGGGGAACCTGAGACCCAGTTGCCACTGACTCG...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
3UTR CAA 72 bp GGAACAGGCTTATTGTTGGTGAATTTTACACAGCAGTaGCCCTTTCAGGGTTTGCTGAACACCATGGGCACA +
Preference number: 4 (lower is better)
Translates to: GTGLLLVNFTQQ*PFQGLLNTMGT
Trigger: TGTGCCCATGGTGTTCAGCAAACCCTGAAAGGGCAACTGCTGTGTAAAATTCACCAACAATAAGCCTGTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
3UTR CAA 72 bp GCAACCTTAAAGCCAGCTGTGGGAACAGGCTTATTGTaGGTGAATTTTACACAGCAGTTGCCCTTTCAGGGT +
Preference number: 4 (lower is better)
Translates to: ATLKPAVGTGLL*VNFTQQLPFQG
Trigger: ACCCTGAAAGGGCAACTGCTGTGTAAAATTCACCAACAATAAGCCTGTTCCCACAGCTGGCTTTAAGGTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp TTTCTGTCACGGACACTGGCTAATGGGTCTTTCTTGGATGAAGAGAGAAGGGAGGGACAGTGTGGTTGTTaGGCTTTAATGAAAGCGTTT +
Preference number: 4 (lower is better)
Translates to: FLSRTLANGSFLDEERREGQCGC*ALMKAF
Trigger: AAACGCTTTCATTAAAGCTCAACAACCACACTGTCC...CTCCCTTCTCTCTTCATCCAAGAAAGACCCATTAGCCAGTGTCCGTGACAGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp TCAAATTACAAGAAAGTTCTAGCTTCCATTCCTCCCCTCAGGTTCAGTCCCCACGATCACCATTCAGAATaGCTTCAGCCAGAGAGTTCA +
Preference number: 4 (lower is better)
Translates to: SNYKKVLASIPPLRFSPHDHHSE*LQPESS
Trigger: TGAACTCTCTGGCTGAAGTCATTCTGAATGGTGATC...GTGGGGACTGAACCTGAGGGGAGGAATGGAAGCTAGAACTTTCTTGTAATTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGTGGAAGCATCCATCATaGGATACTCCACATTCATGG +
Preference number: 4 (lower is better)
Translates to: TQPSVLENILSLTACPLEWKHPS*DTPHSW
Trigger: CCATGAATGTGGAGTATCTCATGATGGATGCTTCCA...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGACAGGGAACGCAGCATaGAGAATACCCGGATGGCCC +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRTGNAA*RIPGWP
Trigger: GGGCCATCCGGGTATTCTTCATGCTGCGTTCCCTGT...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR TCA 90 bp GAAATCTCTCATCCTCAACTCTCAGCACTAATTAGTCAAGAAATGTCCAAGAAAGAAGGCCAGCAAACTTaGCCACTCCCCAGCCAAGTC +
Preference number: 4 (lower is better)
Translates to: EISHPQLSALISQEMSKKEGQQT*PLPSQV
Trigger: GACTTGGCTGGGGAGTGGTCAAGTTTGCTGGCCTTC...TTTCTTGGACATTTCTTGACTAATTAGTGCTGAGAGTTGAGGATGAGAGATTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR TCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAGAAGGCCAGCAAACTTaGCCACTCCCCAGCCAAGTC +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLEGQQT*PLPSQV
Trigger: GACTTGGCTGGGGAGTGGTCAAGTTTGCTGGCCTTC...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR GCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTATGCAGGTGGTCCAAGTaGTCAGCCACCAGGTCACTC +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLCRWSK*SATRSL
Trigger: GAGTGACCTGGTGGCTGAGCACTTGGACCACCTGCA...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR GCA 90 bp TGTTCACATATTCTGGAGCAAAAGGGACTTCTTCACATTCTATCAAATCTTGTTTCCTCTGCATCTTCATaGGCCTGGCCTGGATGCGGC +
Preference number: 4 (lower is better)
Translates to: CSHILEQKGLLHILSNLVSSASS*AWPGCG
Trigger: GCCGCATCCAGGCCAGGCGCATGAAGATGCAGAGGA...AACAAGATTTGATAGAATGTGAAGAAGTCCCTTTTGCTCCAGAATATGTGAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CCA 90 bp CAAATGAGTGCTTGGTGGTTGTCTTGTAGGGAGAGGTATGAGGGGCAGTTTTCACAACGTTTTTGTAGTTaGGTCTCTTTTGCATCCGCT +
Preference number: 4 (lower is better)
Translates to: QMSAWWLSCRERYEGQFSQRFCS*VSFASA
Trigger: AGCGGATGCAAAAGAGACCCAACTACAAAAACGTTG...TGAAAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGCTTTGTTATGAGACATaGCATACAGGAGGCAGAGCA +
Preference number: 4 (lower is better)
Translates to: TQPSVLENILSLTACPLELCYET*HTGGRA
Trigger: TGCTCTGCCTCCTGTATGCCATGTCTCATAACAAAG...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTACTCCTCCCGAGTCAGTaGCAACTGGGTCTCAGGTTC +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLLLPSQ*QLGLRF
Trigger: GAACCTGAGACCCAGTTGCCACTGACTCGGGAGGAG...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTACTCCCCAGCCAAGTCTaGATACGTCAGGCTCCACCA +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLLPSQV*IRQAPP
Trigger: TGGTGGAGCCTGACGTATCCAGACTTGGCTGGGGAG...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR TCA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGGGACAGTGTGGTTGTTaGGCTTTAATGAAAGCGTTT +
Preference number: 4 (lower is better)
Translates to: TQPSVLENILSLTACPLEGQCGC*ALMKAF
Trigger: AAACGCTTTCATTAAAGCTCAACAACCACACTGTCC...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTACAGGCTTGTGAATGGTaGTGTTCAGGGCACGGCTGT +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLQACEW*CSGHGC
Trigger: ACAGCCGTGCCCTGAACATCACCATTCACAAGCCTG...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR GCA 90 bp ATCTCTCATCCTCAACTCTCAGCACTAATTAGTCAAGAAATGTCCAAGAAACATTTCCCCCGATTCCGGTaGTCCTCATCTGTCTGCACA +
Preference number: 4 (lower is better)
Translates to: ISHPQLSALISQEMSKKHFPRFR*SSSVCT
Trigger: TGTGCAGACAGATGAGGAGCACCGGAATCGGGGGAA...ATGTTTCTTGGACATTTCTTGACTAATTAGTGCTGAGAGTTGAGGATGAGAGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR GCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGTTCCCCCGATTCCGGTaGTCCTCATCTGTCTGCACA +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRFPRFR*SSSVCT
Trigger: TGTGCAGACAGATGAGGAGCACCGGAATCGGGGGAA...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR GCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGTCGTCTGTGGTGTTCTaGTCCTGCACTGAGGTCCCA +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRSSVVF*SCTEVP
Trigger: TGGGACCTCAGTGCAGGAGCAGAACACCACAGACGA...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR GCA 90 bp CTGTTCACATATTCTGGAGCAAAAGGGACTTCTTCACATTCTATCAAATCTTGTCTGGTCAGTACTTGCTaGTTCAGGAGCAGGCAGCTC +
Preference number: 4 (lower is better)
Translates to: LFTYSGAKGTSSHSIKSCLVSTC*FRSRQL
Trigger: GAGCTGCCTGCTCCTGAAGCAGCAAGTACTGACCAG...ACAAGATTTGATAGAATGTGAAGAAGTCCCTTTTGCTCCAGAATATGTGAACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR GCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTACTGGTCAGTACTTGCTaGTTCAGGAGCAGGCAGCTC +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLLVSTC*FRSRQL
Trigger: GAGCTGCCTGCTCCTGAAGCAGCAAGTACTGACCAG...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR GCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAGGTCACTGCTGCCTCTaGGGCACTGCTCATAGAAAC +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLGHCCL*GTAHRN
Trigger: GTTTCTATGAGCAGTGCCGCAGAGGCAGCAGTGACC...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR GCA 90 bp CTGTTCACATATTCTGGAGCAAAAGGGACTTCTTCACATTCTATCAAATCTTGTGCAAACACAGAGCGTTaGACTGTCGGGTCACTGCTG +
Preference number: 4 (lower is better)
Translates to: LFTYSGAKGTSSHSIKSCANTER*TVGSLL
Trigger: CAGCAGTGACCCGACAGTGCAACGCTCTGTGTTTGC...ACAAGATTTGATAGAATGTGAAGAAGTCCCTTTTGCTCCAGAATATGTGAACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR GCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGGCAAACACAGAGCGTTaGACTGTCGGGTCACTGCTG +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRANTER*TVGSLL
Trigger: CAGCAGTGACCCGACAGTGCAACGCTCTGTGTTTGC...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGTGGTCCAAGGAGTaGATGTTGCGGGAGGACTTG +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLRWSKE*MLREDL
Trigger: CAAGTCCTCCCGCAACATCCACTCCTTGGACCACCT...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CCA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGCAACGTTTTTGTAGTTaGGTCTCTTTTGCATCCGCT +
Preference number: 4 (lower is better)
Translates to: TQPSVLENILSLTACPLEQRFCS*VSFASA
Trigger: AGCGGATGCAAAAGAGACCCAACTACAAAAACGTTG...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGACAGCCAGGAACCGCTaGACCATACCACCATCCTTG +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRTARNR*TIPPSL
Trigger: CAAGGATGGTGGTATGGTCCAGCGGTTCCTGGCTGT...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR TCA 90 bp CTGTTCACATATTCTGGAGCAAAAGGGACTTCTTCACATTCTATCAAATCTTGTCAGCGGTTTTGTCTCTaGTGTAGTGCAGCATGGCCT +
Preference number: 4 (lower is better)
Translates to: LFTYSGAKGTSSHSIKSCQRFCL*CSAAWP
Trigger: AGGCCATGCTGCACTACATCAGAGACAAAACCGCTG...ACAAGATTTGATAGAATGTGAAGAAGTCCCTTTTGCTCCAGAATATGTGAACAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR TCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTACAGCGGTTTTGTCTCTaGTGTAGTGCAGCATGGCCT +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLQRFCL*CSAAWP
Trigger: AGGCCATGCTGCACTACATCAGAGACAAAACCGCTG...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR TCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTATTCACCAGCGGGGCGTaGTGTATAATGAGGAAGACC +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLFTSGA*CIMRKT
Trigger: GGTCTTCCTCATTATACATCACGCCCCGCTGGTGAA...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR GCA 90 bp GTCAAGAAATGTCCAAGAAACATTGATTCTGACAAGTTTCTTCACAAACCTAAGTCGTCTGTGGTGTTCTaGTCCTGCACTGAGGTCCCA +
Preference number: 4 (lower is better)
Translates to: VKKCPRNIDSDKFLHKPKSSVVF*SCTEVP
Trigger: TGGGACCTCAGTGCAGGAGCAGAACACCACAGACGA...CTTAGGTTTGTGAAGAAACTTGTCAGAATCAATGTTTCTTGGACATTTCTTGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR GCA 90 bp ACTGTTCACATATTCTGGAGCAAAAGGGACTTCTTCACATTCTATCAAATCTTGGACACTCTCTTCTCTTaGACCCTCCAAACAGGCCAG +
Preference number: 4 (lower is better)
Translates to: TVHIFWSKRDFFTFYQILDTLFS*TLQTGQ
Trigger: CTGGCCTGTTTGGAGGGTGCAAGAGAAGAGAGTGTC...CAAGATTTGATAGAATGTGAAGAAGTCCCTTTTGCTCCAGAATATGTGAACAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR GCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAGACACTCTCTTCTCTTaGACCCTCCAAACAGGCCAG +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLDTLFS*TLQTGQ
Trigger: CTGGCCTGTTTGGAGGGTGCAAGAGAAGAGAGTGTC...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR GCA 90 bp TCAAATTACAAGAAAGTTCTAGCTTCCATTCCTCCCCTCAGGTTCAGTCCCCACGGTGATGACTGTGCATaGAATCAAGTCACTGTTATT +
Preference number: 4 (lower is better)
Translates to: SNYKKVLASIPPLRFSPHGDDCA*NQVTVI
Trigger: AATAACAGTGACTTGATTGCATGCACAGTCATCACC...GTGGGGACTGAACCTGAGGGGAGGAATGGAAGCTAGAACTTTCTTGTAATTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR GCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTATCCACTCCTGTCACCTaGATGTCCTGTAGAAGGCCA +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLSTPVT*MSCRRP
Trigger: TGGCCTTCTACAGGACATGCAGGTGACAGGAGTGGA...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR GCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAACACGAAGGTGGCCTaGAGGATAGGGAAGGGCTTA +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLNTKVA*RIGKGL
Trigger: TAAGCCCTTCCCTATCCTGCAGGCCACCTTCGTGTT...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGAGCCTGTTGAGCAGGTaGTCGGTGAGTACGTCATTG +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRSLLSR*SVSTSL
Trigger: CAATGACGTACTCACCGACCACCTGCTCAACAGGCT...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CCA 90 bp ATCTCTCATCCTCAACTCTCAGCACTAATTAGTCAAGAAATGTCCAAGAAACATGCTTGGCAGAACTTCTaGGAACATCCTGTGCAGGCT +
Preference number: 4 (lower is better)
Translates to: ISHPQLSALISQEMSKKHAWQNF*EHPVQA
Trigger: AGCCTGCACAGGATGTTCCCAGAAGTTCTGCCAAGC...ATGTTTCTTGGACATTTCTTGACTAATTAGTGCTGAGAGTTGAGGATGAGAGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAGCTTGGCAGAACTTCTaGGAACATCCTGTGCAGGCT +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLAWQNF*EHPVQA
Trigger: AGCCTGCACAGGATGTTCCCAGAAGTTCTGCCAAGC...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGACCGGATGCTGGGCTTaGCAGAACTTCTGGGAACAT +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRTGCWA*QNFWEH
Trigger: ATGTTCCCAGAAGTTCTGCCAAGCCCAGCATCCGGT...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGTCTTCTCCTCGTCTGTaGTGTTCTGCTCCTGCACTG +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRSSPRL*CSAPAL
Trigger: CAGTGCAGGAGCAGAACACCACAGACGAGGAGAAGA...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CCA 90 bp ATCTCTCATCCTCAACTCTCAGCACTAATTAGTCAAGAAATGTCCAAGAAACATCCGGATCCTGCCATCTaGCTGAGCAGCATTGTTCAT +
Preference number: 4 (lower is better)
Translates to: ISHPQLSALISQEMSKKHPDPAI*LSSIVH
Trigger: ATGAACAATGCTGCTCAGCCAGATGGCAGGATCCGG...ATGTTTCTTGGACATTTCTTGACTAATTAGTGCTGAGAGTTGAGGATGAGAGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGCCGGATCCTGCCATCTaGCTGAGCAGCATTGTTCAT +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRPDPAI*LSSIVH
Trigger: ATGAACAATGCTGCTCAGCCAGATGGCAGGATCCGG...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTACTCCACATCACCACATaGCAGCCGCTTCACAAAGTC +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLLHITT*QPLHKV
Trigger: GACTTTGTGAAGCGGCTGCCATGTGGTGATGTGGAG...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAACTTCTGTTGTCGGCTaGATTGGGAGGTCCAGAAGG +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLTSVVG*IGRSRR
Trigger: CCTTCTGGACCTCCCAATCCAGCCGACAACAGAAGT...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR TCA 90 bp ACTGTTCACATATTCTGGAGCAAAAGGGACTTCTTCACATTCTATCAAATCTTGATCCTGCCATCTGGCTaGGCAGCATTGTTCATGATC +
Preference number: 4 (lower is better)
Translates to: TVHIFWSKRDFFTFYQILILPSG*AALFMI
Trigger: GATCATGAACAATGCTGCTCAGCCAGATGGCAGGAT...CAAGATTTGATAGAATGTGAAGAAGTCCCTTTTGCTCCAGAATATGTGAACAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR TCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGATCCTGCCATCTGGCTaGGCAGCATTGTTCATGATC +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRILPSG*AALFMI
Trigger: GATCATGAACAATGCTGCTCAGCCAGATGGCAGGAT...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR TCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGACATCATCTGTTTTaGTCAGGTCCTCCTCCCGAG +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLRHHLF*SGPPPE
Trigger: CTCGGGAGGAGGACCTGATCAAAACAGATGATGTCT...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR GCA 90 bp ACTGTTCACATATTCTGGAGCAAAAGGGACTTCTTCACATTCTATCAAATCTTGTATCCAGGAAGGGTCTaGTCCACTGTGCATTCTCTG +
Preference number: 4 (lower is better)
Translates to: TVHIFWSKRDFFTFYQILYPGRV*STVHSL
Trigger: CAGAGAATGCACAGTGGAGCAGACCCTTCCTGGATA...CAAGATTTGATAGAATGTGAAGAAGTCCCTTTTGCTCCAGAATATGTGAACAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR GCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTATATCCAGGAAGGGTCTaGTCCACTGTGCATTCTCTG +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLYPGRV*STVHSL
Trigger: CAGAGAATGCACAGTGGAGCAGACCCTTCCTGGATA...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR GCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGTCCAAACAGGCCAGGTaGACATCCTTGATGACACAG +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRSKQAR*TSLMTQ
Trigger: CTGTGTCATCAAGGATGTGCACCTGGCCTGTTTGGA...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CCA 90 bp TGTTCACATATTCTGGAGCAAAAGGGACTTCTTCACATTCTATCAAATCTTGTTAGCCTGTTGAGCAGGTaGTCGGTGAGTACGTCATTG +
Preference number: 4 (lower is better)
Translates to: CSHILEQKGLLHILSNLVSLLSR*SVSTSL
Trigger: CAATGACGTACTCACCGACCACCTGCTCAACAGGCT...AACAAGATTTGATAGAATGTGAAGAAGTCCCTTTTGCTCCAGAATATGTGAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
3UTR CAA 72 bp TTTCTCTGGAGACCACACTGCATGGTAGAGAGTCACTaGAATTGTGTAACATTTATGCTGACCCTAGCAATT +
Preference number: 4 (lower is better)
Translates to: FLWRPHCMVESH*NCVTFMLTLAI
Trigger: AATTGCTAGGGTCAGCATAAATGTTACACAATTCAAGTGACTCTCTACCATGCAGTGTGGTCTCCAGAGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR TCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAAATCAGGATCTCAGTaGTGGAACGGATGGTCTCCA +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLKSGSQ*WNGWSP
Trigger: TGGAGACCATCCGTTCCATCACTGAGATCCTGATTT...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR TCA 90 bp ATCTCTCATCCTCAACTCTCAGCACTAATTAGTCAAGAAATGTCCAAGAAACATACAGAGCTGTCATTTTaGTCGCCCCAAATCAGGATC +
Preference number: 4 (lower is better)
Translates to: ISHPQLSALISQEMSKKHTELSF*SPQIRI
Trigger: GATCCTGATTTGGGGCGATCAAAATGACAGCTCTGT...ATGTTTCTTGGACATTTCTTGACTAATTAGTGCTGAGAGTTGAGGATGAGAGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR TCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAACAGAGCTGTCATTTTaGTCGCCCCAAATCAGGATC +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLTELSF*SPQIRI
Trigger: GATCCTGATTTGGGGCGATCAAAATGACAGCTCTGT...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR TCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGGCGATGTCTCGTGGCTaGTGTTCTCAAAGAGAATGT +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRAMSRG*CSQREC
Trigger: ACATTCTCTTTGAGAACATCAGCCACGAGACATCGC...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR TCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGTCACATGGCTCCCAATaGACCAGACCAAATTGGAGA +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRSHGSQ*TRPNWR
Trigger: TCTCCAATTTGGTCTGGTTCATTGGGAGCCATGTGA...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR TCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGTCCATGCCTTTGTTATaGGACATGGCATACAGGAGG +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRSMPLL*DMAYRR
Trigger: CCTCCTGTATGCCATGTCTCATAACAAAGGCATGGA...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR TCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGATAATGCAGCGGATATaGTCCGAGAACACGAAGGTG +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRIMQRI*SENTKV
Trigger: CACCTTCGTGTTCTCGGATCATATCCGCTGCATTAT...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR GCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTACCCCACTTGTCTTCATaGTTTTTGAACCACCCTCTG +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLPHLSS*FLNHPL
Trigger: CAGAGGGTGGTTCAAAAAGCATGAAGACAAGTGGGG...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGTACAGGTACTTCAGGTaGTCCAAGGAGTGGATGTTG +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRYRYFR*SKEWML
Trigger: CAACATCCACTCCTTGGACCACCTGAAGTACCTGTA...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGTCAAGTTCGATCACATaGCTCCCAATGAACCAGACC +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRSSSIT*LPMNQT
Trigger: GGTCTGGTTCATTGGGAGCCATGTGATCGAACTTGA...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR TCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGACCATGCTTTCGGGATaGTTGAAGAACTTGATGGCT +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRTMLSG*LKNLMA
Trigger: AGCCATCAAGTTCTTCAATCATCCCGAAAGCATGGT...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR TCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGGATCACCATTCAGAATaGCTTCAGCCAGAGAGTTCA +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRDHHSE*LQPESS
Trigger: TGAACTCTCTGGCTGAAGTCATTCTGAATGGTGATC...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR TCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGGCTTGCCAAGCTTCATaGTCACCATCTCAATCTCTT +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRACQAS*SPSQSL
Trigger: AAGAGATTGAGATGGTGATCATGAAGCTTGGCAAGC...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR TCA 90 bp GAAATCTCTCATCCTCAACTCTCAGCACTAATTAGTCAAGAAATGTCCAAGAAATGGAAGCATCCATCATaGGATACTCCACATTCATGG +
Preference number: 4 (lower is better)
Translates to: EISHPQLSALISQEMSKKWKHPS*DTPHSW
Trigger: CCATGAATGTGGAGTATCTCATGATGGATGCTTCCA...TTTCTTGGACATTTCTTGACTAATTAGTGCTGAGAGTTGAGGATGAGAGATTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR TCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGTGGAAGCATCCATCATaGGATACTCCACATTCATGG +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRWKHPS*DTPHSW
Trigger: CCATGAATGTGGAGTATCTCATGATGGATGCTTCCA...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR GCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGTTTGCATCCGCTTCTTaGCCTTGTGCTTGTTCATCT +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRFASAS*PCACSS
Trigger: AGATGAACAAGCACAAGGGCAAGAAGCGGATGCAAA...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CCA 90 bp ATCTCTCATCCTCAACTCTCAGCACTAATTAGTCAAGAAATGTCCAAGAAACATCTTTGTTATGAGACATaGCATACAGGAGGCAGAGCA +
Preference number: 4 (lower is better)
Translates to: ISHPQLSALISQEMSKKHLCYET*HTGGRA
Trigger: TGCTCTGCCTCCTGTATGCCATGTCTCATAACAAAG...ATGTTTCTTGGACATTTCTTGACTAATTAGTGCTGAGAGTTGAGGATGAGAGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGCTTTGTTATGAGACATaGCATACAGGAGGCAGAGCA +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRLCYET*HTGGRA
Trigger: TGCTCTGCCTCCTGTATGCCATGTCTCATAACAAAG...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAGCAGATGGTTGTAGGTaGTTTTCTCAGCTTCACTTG +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLADGCR*FSQLHL
Trigger: CAAGTGAAGCTGAGAAAACCACCTACAACCATCTGC...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR TCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAGGACAGTGTGGTTGTTaGGCTTTAATGAAAGCGTTT +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLGQCGC*ALMKAF
Trigger: AAACGCTTTCATTAAAGCTCAACAACCACACTGTCC...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR TCA 90 bp CTGTTCACATATTCTGGAGCAAAAGGGACTTCTTCACATTCTATCAAATCTTGTTGTAGACATTCAAAGTaGTGGTTCTCACGGCAATTC +
Preference number: 4 (lower is better)
Translates to: LFTYSGAKGTSSHSIKSCCRHSK*WFSRQF
Trigger: GAATTGCCGTGAGAACCATCACTTTGAATGTCTACA...ACAAGATTTGATAGAATGTGAAGAAGTCCCTTTTGCTCCAGAATATGTGAACAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR TCA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTATGTAGACATTCAAAGTaGTGGTTCTCACGGCAATTC +
Preference number: 4 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLCRHSK*WFSRQF
Trigger: GAATTGCCGTGAGAACCATCACTTTGAATGTCTACA...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGCAACGTTTTTGTAGTTaGGTCTCTTTTGCATCCGCT +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRQRFCS*VSFASA
Trigger: AGCGGATGCAAAAGAGACCCAACTACAAAAACGTTG...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR TCA 90 bp GTCAAGAAATGTCCAAGAAACATTGATTCTGACAAGTTTCTTCACAAACCTAAGGGACAGTGTGGTTGTTaGGCTTTAATGAAAGCGTTT +
Preference number: 4 (lower is better)
Translates to: VKKCPRNIDSDKFLHKPKGQCGC*ALMKAF
Trigger: AAACGCTTTCATTAAAGCTCAACAACCACACTGTCC...CTTAGGTTTGTGAAGAAACTTGTCAGAATCAATGTTTCTTGGACATTTCTTGAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR GCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGGGTGATGACTGTGCATaGAATCAAGTCACTGTTATT +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRGDDCA*NQVTVI
Trigger: AATAACAGTGACTTGATTGCATGCACAGTCATCACC...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGACAGGGCAAAGTCATTaGTGTGCTCATTGTAAAAGA +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRTGQSH*CAHCKR
Trigger: TCTTTTACAATGAGCACACCAATGACTTTGCCCTGT...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CCA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGAAGAAATGGACAGTGTaGTTGTTGAGCTTTAATGAA +
Preference number: 4 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRKKWTV*LLSFNE
Trigger: TTCATTAAAGCTCAACAACCACACTGTCCATTTCTT...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CAA 90 bp ACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATCAGGGGCAGGGCCCCATGTTGCGGGAGGACTaGCTGTGGCCCCCGCCCACC +
Preference number: 5 (lower is better)
Translates to: TVPVGPAPCGCQDQGQGPMLRED*LWPPPT
Trigger: GGTGGGCGGGGGCCACAGCAAGTCCTCCCGCAACAT...GGGGCCCTGCCCCTGATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGT
72% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp ACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATCAGGGGCAGGGCCCCCTGTTGTCGGCTGGATaGGGAGGTCCAGAAGGGCGG +
Preference number: 5 (lower is better)
Translates to: TVPVGPAPCGCQDQGQGPLLSAG*GGPEGR
Trigger: CCGCCCTTCTGGACCTCCCAATCCAGCCGACAACAG...GGGGCCCTGCCCCTGATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp GGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATGGCCGTTCTCCTCCCTaGTCGGGGTTCTCCAGGGAG +
Preference number: 5 (lower is better)
Translates to: GAAQRTVPVGPAPCGCQDGRSPP*SGFSRE
Trigger: CTCCCTGGAGAACCCCGACAAGGGAGGAGAACGGCC...ATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp GGTGGGCTGCTGGGCGGGAAGGAGGCTAGGGGACAGGTGCATTGTCTCCCCCTCGGCCGTTCTCCTCCCTaGTCGGGGTTCTCCAGGGAG +
Preference number: 5 (lower is better)
Translates to: GGLLGGKEARGQVHCLPLGRSPP*SGFSRE
Trigger: CTCCCTGGAGAACCCCGACAAGGGAGGAGAACGGCC...GAGGGGGAGACAATGCACCTGTCCCCTAGCCTCCTTCCCGCCCAGCAGCCCACC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CAA 90 bp GGTGGGCTGCTGGGCGGGAAGGAGGCTAGGGGACAGGTGCATTGTCTCCCCCTCTCAGTGGAGTGCCCGTaGGGGGCAGGAGGATGGAAG +
Preference number: 5 (lower is better)
Translates to: GGLLGGKEARGQVHCLPLSVECP*GAGGWK
Trigger: CTTCCATCCTCCTGCCCCCAACGGGCACTCCACTGA...GAGGGGGAGACAATGCACCTGTCCCCTAGCCTCCTTCCCGCCCAGCAGCCCACC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000115823.2
ENSMUST00000115828.9
CDS-3UTR CAA 90 bp GGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATCTGTTGTCGGCTGGATaGGGAGGTCCAGAAGGGCGG +
Preference number: 5 (lower is better)
Translates to: GAAQRTVPVGPAPCGCQDLLSAG*GGPEGR
Trigger: CCGCCCTTCTGGACCTCCCAATCCAGCCGACAACAG...ATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp ACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGGCCTGGATGCGGCCCTaGGCCAGGCGCTGCTTGGCA +
Preference number: 5 (lower is better)
Translates to: TLGGKTKELPKGRCQWVLAWMRP*ARRCLA
Trigger: TGCCAAGCAGCGCCTGGCCAAGGGCCGCATCCAGGC...CAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp ACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATCAGGGGCAGGGCCCCGCAAAGCCTGGCACCTaGTCTACGGATGCAAACACA +
Preference number: 5 (lower is better)
Translates to: TVPVGPAPCGCQDQGQGPAKPGT*STDANT
Trigger: TGTGTTTGCATCCGTAGACAAGGTGCCAGGCTTTGC...GGGGCCCTGCCCCTGATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp ACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATCAGGGGCAGGGCCCCATGAACCAGACCAAATaGGAGAAGTACGGGACAGCG +
Preference number: 5 (lower is better)
Translates to: TVPVGPAPCGCQDQGQGPMNQTK*EKYGTA
Trigger: CGCTGTCCCGTACTTCTCCAATTTGGTCTGGTTCAT...GGGGCCCTGCCCCTGATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp GAAGAGAGTCATTCATTCCCCCACCCGCCCCAGCCGGTGGCACCTTCTGCATATGCCTGGATGCGGCCCTaGGCCAGGCGCTGCTTGGCA +
Preference number: 5 (lower is better)
Translates to: EESHSFPHPPQPVAPSAYAWMRP*ARRCLA
Trigger: TGCCAAGCAGCGCCTGGCCAAGGGCCGCATCCAGGC...ATATGCAGAAGGTGCCACCGGCTGGGGCGGGTGGGGGAATGAATGACTCTCTTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS GCA 90 bp GAGTTCGTGGCGGCGCTCTTCTCCTCGTCTGTGGTGTTCTGCTCCTaGACTGAGGTCCCAGCAGCGGCCACCTCTGAGAGCTTGCCAAGC +
Preference number: 5 (lower is better)
Translates to: EFVAALFSSSVVFCS*TEVPAAATSESLPS
Trigger: GCTTGGCAAGCTCTCAGAGGTGGCCGCTGCTGGGACCTCAGTGCAGGAGCAGAACACCACAGACGAGGAGAAGAGCGCCGCCACGAACTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp CTACACAGGAGGCCGTTTCTAGGATCCCAGCCTGCTCAGCGAGAGGTCAGAGCAATGTTGCGGGAGGACTaGCTGTGGCCCCCGCCCACC +
Preference number: 5 (lower is better)
Translates to: LHRRPFLGSQPAQREVRAMLRED*LWPPPT
Trigger: GGTGGGCGGGGGCCACAGCAAGTCCTCCCGCAACAT...TGCTCTGACCTCTCGCTGAGCAGGCTGGGATCCTAGAAACGGCCTCCTGTGTAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp AAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGTTGGCCAGGCGCTGCTaGGCAATAATGCAGCGGATA +
Preference number: 5 (lower is better)
Translates to: KELPKGRCQWVLPPAAVRLARRC*AIMQRI
Trigger: TATCCGCTGCATTATTGCCAAGCAGCGCCTGGCCAA...CCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp GGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATATCCCAGGACTTCTGTaGTCGGCTGGATTGGGAGGT +
Preference number: 5 (lower is better)
Translates to: GAAQRTVPVGPAPCGCQDIPGLL*SAGLGG
Trigger: ACCTCCCAATCCAGCCGACAACAGAAGTCCTGGGAT...ATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp ACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCTGCCGGGCTCTGGGTaGCTGAGGGTGCAGAGGAAG +
Preference number: 5 (lower is better)
Translates to: TLGGKTKELPKGRCQWVLLPGSG*LRVQRK
Trigger: CTTCCTCTGCACCCTCAGCAACCCAGAGCCCGGCAG...CAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp ACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATCAGGGGCAGGGCCCCGAGTTCTTGCTGGGCTaGGAGTTGACATCCATTTCA +
Preference number: 5 (lower is better)
Translates to: TVPVGPAPCGCQDQGQGPEFLLG*ELTSIS
Trigger: TGAAATGGATGTCAACTCCAAGCCCAGCAAGAACTC...GGGGCCCTGCCCCTGATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp AAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGCTGGCCGATGAGTTCTaGCTGGGCTTGGAGTTGACA +
Preference number: 5 (lower is better)
Translates to: KELPKGRCQWVLPPAAVRLADEF*LGLELT
Trigger: TGTCAACTCCAAGCCCAGCAAGAACTCATCGGCCAG...CCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS TCA 90 bp CCGAGTCAGTGGCAACTGGGTCTCAGGTTCCCCTCGCAGCTGCAGTaGCAGGGAACGCAGCATGAAGAATACCCGGATGGCCCGCCTCGT +
Preference number: 5 (lower is better)
Translates to: PSQWQLGLRFPSQLQ*QGTQHEEYPDGPPR
Trigger: ACGAGGCGGGCCATCCGGGTATTCTTCATGCTGCGTTCCCTGTCACTGCAGCTGCGAGGGGAACCTGAGACCCAGTTGCCACTGACTCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000155633.8
CDS GCA 90 bp TCCTCCCGAGTCAGTGGCAACTGGGTCTCAGGTTCCCCTCGCAGCTaGAGTGACAGGGAACGCAGCATGAAGAATACCCGGATGGCCCGC +
Preference number: 5 (lower is better)
Translates to: SSRVSGNWVSGSPRS*SDRERSMKNTRMAR
Trigger: GCGGGCCATCCGGGTATTCTTCATGCTGCGTTCCCTGTCACTGCAGCTGCGAGGGGAACCTGAGACCCAGTTGCCACTGACTCGGGAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp TGGGCCACAGCAAAGCCTGGCACCTTGTCTACGGATGCAAACACAGAGCGTTGCATGTTGCGGGAGGACTaGCTGTGGCCCCCGCCCACC +
Preference number: 5 (lower is better)
Translates to: WATAKPGTLSTDANTERCMLRED*LWPPPT
Trigger: GGTGGGCGGGGGCCACAGCAAGTCCTCCCGCAACAT...GCAACGCTCTGTGTTTGCATCCGTAGACAAGGTGCCAGGCTTTGCTGTGGCCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CAA 90 bp AGGCCTGTGGGTACTGGGACTTCCTCACTCATGGCTTCCCTTGTCAGGGGACCAGGCCGTTCTCCTCCCTaGTCGGGGTTCTCCAGGGAG +
Preference number: 5 (lower is better)
Translates to: RPVGTGTSSLMASLVRGPGRSPP*SGFSRE
Trigger: CTCCCTGGAGAACCCCGACAAGGGAGGAGAACGGCC...TGGTCCCCTGACAAGGGAAGCCATGAGTGAGGAAGTCCCAGTACCCACAGGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CAA 90 bp GCAGGTGCTGGGAGGAGGAGGAGGAGGAGCAGAGTCCAAATCCCAGGACTTCTGTCAGTGGAGTGCCCGTaGGGGGCAGGAGGATGGAAG +
Preference number: 5 (lower is better)
Translates to: AGAGRRRRRSRVQIPGLLSVECP*GAGGWK
Trigger: CTTCCATCCTCCTGCCCCCAACGGGCACTCCACTGA...CAGAAGTCCTGGGATTTGGACTCTGCTCCTCCTCCTCCTCCTCCCAGCACCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CAA 90 bp TGTGCACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCAGTGGAGTGCCCGTaGGGGGCAGGAGGATGGAAG +
Preference number: 5 (lower is better)
Translates to: CAHWEGRQRSCPKDGASGSVECP*GAGGWK
Trigger: CTTCCATCCTCCTGCCCCCAACGGGCACTCCACTGA...CCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGTGCACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp GACGTGGCATGCATGGCCTGGGAGATGGGAGCAATGATTTTGGAGGCTGACTCTGCCTGGATGCGGCCCTaGGCCAGGCGCTGCTTGGCA +
Preference number: 5 (lower is better)
Translates to: DVACMAWEMGAMILEADSAWMRP*ARRCLA
Trigger: TGCCAAGCAGCGCCTGGCCAAGGGCCGCATCCAGGC...AGAGTCAGCCTCCAAAATCATTGCTCCCATCTCCCAGGCCATGCATGCCACGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp AAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGGCAAAGCCTGGCACCTaGTCTACGGATGCAAACACA +
Preference number: 5 (lower is better)
Translates to: KELPKGRCQWVLPPAAVRAKPGT*STDANT
Trigger: TGTGTTTGCATCCGTAGACAAGGTGCCAGGCTTTGC...CCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp ATAGAGGGCGCTCACCACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGCTGCCGGGCTCTGGGTaGCTGAGGGTGCAGAGGAAG +
Preference number: 5 (lower is better)
Translates to: IEGAHHHTESDLWEVSHLLPGSG*LRVQRK
Trigger: CTTCCTCTGCACCCTCAGCAACCCAGAGCCCGGCAG...CAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGTGGTGAGCGCCCTCTAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS TCA 90 bp GGGTCTCAGGTTCCCCTCGCAGCTGCAGTGACAGGGAACGCAGCATaGAGAATACCCGGATGGCCCGCCTCGTCTTCTCCACATCACCAC +
Preference number: 5 (lower is better)
Translates to: GSQVPLAAAVTGNAA*RIPGWPASSSPHHH
Trigger: GTGGTGATGTGGAGAAGACGAGGCGGGCCATCCGGGTATTCTTCATGCTGCGTTCCCTGTCACTGCAGCTGCGAGGGGAACCTGAGACCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000155633.8
CDS GCA 90 bp TTCTCTGAGTTCGTGGCGGCGCTCTTCTCCTCGTCTGTGGTGTTCTaGTCCTGCACTGAGGTCCCAGCAGCGGCCACCTCTGAGAGCTTG +
Preference number: 5 (lower is better)
Translates to: FSEFVAALFSSSVVF*SCTEVPAAATSESL
Trigger: CAAGCTCTCAGAGGTGGCCGCTGCTGGGACCTCAGTGCAGGAGCAGAACACCACAGACGAGGAGAAGAGCGCCGCCACGAACTCAGAGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS CCA 90 bp ACTGTGCATTCTCTGAGTTCGTGGCGGCGCTCTTCTCCTCGTCTGTaGTGTTCTGCTCCTGCACTGAGGTCCCAGCAGCGGCCACCTCTG +
Preference number: 5 (lower is better)
Translates to: TVHSLSSWRRSSPRL*CSAPALRSQQRPPL
Trigger: CAGAGGTGGCCGCTGCTGGGACCTCAGTGCAGGAGCAGAACACCACAGACGAGGAGAAGAGCGCCGCCACGAACTCAGAGAATGCACAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp TGCACGTCAGAGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCGGCCGTTCTCCTCCCTaGTCGGGGTTCTCCAGGGAG +
Preference number: 5 (lower is better)
Translates to: CTSEATEKANAILRMQPAGRSPP*SGFSRE
Trigger: CTCCCTGGAGAACCCCGACAAGGGAGGAGAACGGCC...GGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCTCTGACGTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp GAAGAGAGTCATTCATTCCCCCACCCGCCCCAGCCGGTGGCACCTTCTGCATATTCAGTGGAGTGCCCGTaGGGGGCAGGAGGATGGAAG +
Preference number: 5 (lower is better)
Translates to: EESHSFPHPPQPVAPSAYSVECP*GAGGWK
Trigger: CTTCCATCCTCCTGCCCCCAACGGGCACTCCACTGA...ATATGCAGAAGGTGCCACCGGCTGGGGCGGGTGGGGGAATGAATGACTCTCTTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CAA 90 bp AAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGACCATACCACCATCCTaGGTGATGACTGTGCATGCA +
Preference number: 5 (lower is better)
Translates to: KELPKGRCQWVLPPAAVRTIPPS*VMTVHA
Trigger: TGCATGCACAGTCATCACCAAGGATGGTGGTATGGT...CCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp ACAGCACCCTCAGCTGGGGTCTCCGTATCTGCTGCAGGCAGTGTGGGGAGCTGGTTGGCCAGGCGCTGCTaGGCAATAATGCAGCGGATA +
Preference number: 5 (lower is better)
Translates to: TAPSAGVSVSAAGSVGSWLARRC*AIMQRI
Trigger: TATCCGCTGCATTATTGCCAAGCAGCGCCTGGCCAA...CCAGCTCCCCACACTGCCTGCAGCAGATACGGAGACCCCAGCTGAGGGTGCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS CCA 90 bp CAAGAAACAGTAGTCAGTGCCAGGTACTTCAGGTGGTCCAAGGAGTaGATGTTGCGGGAGGACTTGCTGTGGCCCCCGCCCACCCAGCTC +
Preference number: 5 (lower is better)
Translates to: QETVVSARYFRWSKE*MLREDLLWPPPTQL
Trigger: GAGCTGGGTGGGCGGGGGCCACAGCAAGTCCTCCCGCAACATCCACTCCTTGGACCACCTGAAGTACCTGGCACTGACTACTGTTTCTTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000150894.2
CDS-3UTR CAA 90 bp AAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGTTGAGGAACTCGCAGTaGATGATCAGGATGTCGTTG +
Preference number: 5 (lower is better)
Translates to: KELPKGRCQWVLPPAAVRLRNSQ*MIRMSL
Trigger: CAACGACATCCTGATCATCAACTGCGAGTTCCTCAA...CCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp GACGTGGCATGCATGGCCTGGGAGATGGGAGCAATGATTTTGGAGGCTGACTCTGGCCGTTCTCCTCCCTaGTCGGGGTTCTCCAGGGAG +
Preference number: 5 (lower is better)
Translates to: DVACMAWEMGAMILEADSGRSPP*SGFSRE
Trigger: CTCCCTGGAGAACCCCGACAAGGGAGGAGAACGGCC...AGAGTCAGCCTCCAAAATCATTGCTCCCATCTCCCAGGCCATGCATGCCACGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp TGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCGGGAAGCACCGGATGCTGGGCTaGGCAGAACTTCTGGGAACA +
Preference number: 5 (lower is better)
Translates to: CVSSVLVEQGDGGLLGGKHRMLG*AELLGT
Trigger: TGTTCCCAGAAGTTCTGCCAAGCCCAGCATCCGGTG...CTTCCCGCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CAA 90 bp ACAAAGGGAGAGCTCTGGCGCACTCAGTGCTCTGTGGGTTCCGCAGGCTCTGGGGCCACCTCTGAGAGCTaGCCAAGCTTCATGATCACC +
Preference number: 5 (lower is better)
Translates to: TKGELWRTQCSVGSAGSGATSES*PSFMIT
Trigger: GGTGATCATGAAGCTTGGCAAGCTCTCAGAGGTGGC...CCCAGAGCCTGCGGAACCCACAGAGCACTGAGTGCGCCAGAGCTCTCCCTTTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR CAA 90 bp GGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGATTTTTCTCAGCTTCACTaGGCACTGGGAGCTGAATTC +
Preference number: 5 (lower is better)
Translates to: GAAQRTVPVGPAPCGCQDFSQLH*ALGAEF
Trigger: GAATTCAGCTCCCAGTGCCAAGTGAAGCTGAGAAAA...ATCCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp TGGTGCTTCCACTGCCACCAGGGCTCCCACTGGCAAATGGTGGCGACGGTGATGAGAGCTGGTCAGTACTaGCTGCTTCAGGAGCAGGCA +
Preference number: 5 (lower is better)
Translates to: WCFHCHQGSHWQMVATVMRAGQY*LLQEQA
Trigger: TGCCTGCTCCTGAAGCAGCAAGTACTGACCAGCTCT...CATCACCGTCGCCACCATTTGCCAGTGGGAGCCCTGGTGGCAGTGGAAGCACCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CAA 90 bp ACAGCACCCTCAGCTGGGGTCTCCGTATCTGCTGCAGGCAGTGTGGGGAGCTGGGCAAAGCCTGGCACCTaGTCTACGGATGCAAACACA +
Preference number: 5 (lower is better)
Translates to: TAPSAGVSVSAAGSVGSWAKPGT*STDANT
Trigger: TGTGTTTGCATCCGTAGACAAGGTGCCAGGCTTTGC...CCAGCTCCCCACACTGCCTGCAGCAGATACGGAGACCCCAGCTGAGGGTGCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR CAA 90 bp TGGCTGTGGGGTCCACAGAGCTCTTGTTCCCAGTGGCCATCACTTTCCTCTCTTCTGCCGGGCTCTGGGTaGCTGAGGGTGCAGAGGAAG +
Preference number: 5 (lower is better)
Translates to: WLWGPQSSCSQWPSLSSLLPGSG*LRVQRK
Trigger: CTTCCTCTGCACCCTCAGCAACCCAGAGCCCGGCAG...AAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTGGACCCCACAGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp GGTGAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACCTGCCGGGCTCTGGGTaGCTGAGGGTGCAGAGGAAG +
Preference number: 5 (lower is better)
Translates to: GETVSFFRVLRSCCFLQDLPGSG*LRVQRK
Trigger: CTTCCTCTGCACCCTCAGCAACCCAGAGCCCGGCAG...GTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp AAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGCCCCCTGCGGCTGTCAGGTTGCTGGGCTTGGAGTaGACATCCATTTCATTCCCA +
Preference number: 5 (lower is better)
Translates to: KELPKGRCQWVLPPAAVRLLGLE*TSISFP
Trigger: TGGGAATGAAATGGATGTCAACTCCAAGCCCAGCAA...CCTGACAGCCGCAGGGGGCAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS GCA 90 bp CGTCAGGGCTGTCCAGGGCATGGTACACCATATCCAGGAAGGGTCTaGTCCACTGTGCATTCTCTGAGTTCGTGGCGGCGCTCTTCTCCT +
Preference number: 5 (lower is better)
Translates to: RQGCPGHGTPYPGRV*STVHSLSSWRRSSP
Trigger: AGGAGAAGAGCGCCGCCACGAACTCAGAGAATGCACAGTGGAGCAGACCCTTCCTGGATATGGTGTACCATGCCCTGGACAGCCCTGACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS GCA 90 bp GCCAGGTGCACATCCTTGATGACACAGCCAGAGCTGGTCAGTACTTaGTGCTTCAGGAGCAGGCAGCTCAGCTCCAGTGTAGCCAACCGG +
Preference number: 5 (lower is better)
Translates to: ARCTSLMTQPELVST*CFRSRQLSSSVANR
Trigger: CCGGTTGGCTACACTGGAGCTGAGCTGCCTGCTCCTGAAGCAGCAAGTACTGACCAGCTCTGGCTGTGTCATCAAGGATGTGCACCTGGC
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp GTGGCTGGTGCTTCCACTGCCACCAGGGCTCCCACTGGCAAATGGTGGCGACGGGAGCAGGTTCCGATTTaGTTCTGTGACAGTGGTGTT +
Preference number: 5 (lower is better)
Translates to: VAGASTATRAPTGKWWRREQVPI*FCDSGV
Trigger: AACACCACTGTCACAGAACAAAATCGGAACCTGCTC...CCGTCGCCACCATTTGCCAGTGGGAGCCCTGGTGGCAGTGGAAGCACCAGCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CAA 90 bp TGGCTGGTGCTTCCACTGCCACCAGGGCTCCCACTGGCAAATGGTGGCGACGGTATGAACCAGACCAAATaGGAGAAGTACGGGACAGCG +
Preference number: 5 (lower is better)
Translates to: WLVLPLPPGLPLANGGDGMNQTK*EKYGTA
Trigger: CGCTGTCCCGTACTTCTCCAATTTGGTCTGGTTCAT...ACCGTCGCCACCATTTGCCAGTGGGAGCCCTGGTGGCAGTGGAAGCACCAGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CAA 90 bp CTACACAGGAGGCCGTTTCTAGGATCCCAGCCTGCTCAGCGAGAGGTCAGAGCAGGCAGGAAAAGCCTGTaGAGCAGGTGGTCGGTGAGT +
Preference number: 5 (lower is better)
Translates to: LHRRPFLGSQPAQREVRAGRKSL*SRWSVS
Trigger: ACTCACCGACCACCTGCTCAACAGGCTTTTCCTGCC...TGCTCTGACCTCTCGCTGAGCAGGCTGGGATCCTAGAAACGGCCTCCTGTGTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp ACTCAGTGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCGGCAGGAAAAGCCTGTaGAGCAGGTGGTCGGTGAGT +
Preference number: 5 (lower is better)
Translates to: TQCVSSVLVEQGDGGLLGGRKSL*SRWSVS
Trigger: ACTCACCGACCACCTGCTCAACAGGCTTTTCCTGCC...GCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACACTGAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CAA 90 bp CTACACAGGAGGCCGTTTCTAGGATCCCAGCCTGCTCAGCGAGAGGTCAGAGCACACCGGATGCTGGGCTaGGCAGAACTTCTGGGAACA +
Preference number: 5 (lower is better)
Translates to: LHRRPFLGSQPAQREVRAHRMLG*AELLGT
Trigger: TGTTCCCAGAAGTTCTGCCAAGCCCAGCATCCGGTG...TGCTCTGACCTCTCGCTGAGCAGGCTGGGATCCTAGAAACGGCCTCCTGTGTAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp TGTGCACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGGCCACCTCTGAGAGCTaGCCAAGCTTCATGATCACC +
Preference number: 5 (lower is better)
Translates to: CAHWEGRQRSCPKDGASGATSES*PSFMIT
Trigger: GGTGATCATGAAGCTTGGCAAGCTCTCAGAGGTGGC...CCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGTGCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp TGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCGGGAAGAGAGCTGGTCAGTACTaGCTGCTTCAGGAGCAGGCA +
Preference number: 5 (lower is better)
Translates to: CVSSVLVEQGDGGLLGGKRAGQY*LLQEQA
Trigger: TGCCTGCTCCTGAAGCAGCAAGTACTGACCAGCTCT...CTTCCCGCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115823.2
ENSMUST00000115828.9
CDS-3UTR CAA 90 bp GACGTGGCATGCATGGCCTGGGAGATGGGAGCAATGATTTTGGAGGCTGACTCTTCAGTGGAGTGCCCGTaGGGGGCAGGAGGATGGAAG +
Preference number: 5 (lower is better)
Translates to: DVACMAWEMGAMILEADSSVECP*GAGGWK
Trigger: CTTCCATCCTCCTGCCCCCAACGGGCACTCCACTGA...AGAGTCAGCCTCCAAAATCATTGCTCCCATCTCCCAGGCCATGCATGCCACGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp ACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGAGAAGGCCAGCAAACTaGACCACTCCCCAGCCAAGT +
Preference number: 5 (lower is better)
Translates to: TLGGKTKELPKGRCQWVLRRPAN*TTPQPS
Trigger: ACTTGGCTGGGGAGTGGTCAAGTTTGCTGGCCTTCT...CAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp GTGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCGGGAAAGAAGGCCAGCAAACTaGACCACTCCCCAGCCAAGT +
Preference number: 5 (lower is better)
Translates to: VCQQCPRRARRWWAAGRERRPAN*TTPQPS
Trigger: ACTTGGCTGGGGAGTGGTCAAGTTTGCTGGCCTTCT...TTCCCGCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR CAA 90 bp AGACTTCAACAGGGAGGAGGCAGCACTGCATGTTGCCATGGTGACGGTCAAAGCCTGTTGTCGGCTGGATaGGGAGGTCCAGAAGGGCGG +
Preference number: 5 (lower is better)
Translates to: RLQQGGGSTACCHGDGQSLLSAG*GGPEGR
Trigger: CCGCCCTTCTGGACCTCCCAATCCAGCCGACAACAG...GCTTTGACCGTCACCATGGCAACATGCAGTGCTGCCTCCTCCCTGTTGAAGTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp CCGAAGGCCTGTGGGTACTGGGACTTCCTCACTCATGGCTTCCCTTGTCAGGGGATCCCAGGACTTCTGTaGTCGGCTGGATTGGGAGGT +
Preference number: 5 (lower is better)
Translates to: PKACGYWDFLTHGFPCQGIPGLL*SAGLGG
Trigger: ACCTCCCAATCCAGCCGACAACAGAAGTCCTGGGAT...CCCCTGACAAGGGAAGCCATGAGTGAGGAAGTCCCAGTACCCACAGGCCTTCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS CCA 90 bp CCATATCCAGGAAGGGTCTGCTCCACTGTGCATTCTCTGAGTTCGTaGCGGCGCTCTTCTCCTCGTCTGTGGTGTTCTGCTCCTGCACTG +
Preference number: 5 (lower is better)
Translates to: PYPGRVCSTVHSLSS*RRSSPRLWCSAPAL
Trigger: CAGTGCAGGAGCAGAACACCACAGACGAGGAGAAGAGCGCCGCCACGAACTCAGAGAATGCACAGTGGAGCAGACCCTTCCTGGATATGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS CCA 90 bp GAAGAATACCCGGATGGCCCGCCTCGTCTTCTCCACATCACCACATaGCAGCCGCTTCACAAAGTCAATGCCAGTCAGTGGAGTGCCCGT +
Preference number: 5 (lower is better)
Translates to: EEYPDGPPRLLHITT*QPLHKVNASQWSAR
Trigger: ACGGGCACTCCACTGACTGGCATTGACTTTGTGAAGCGGCTGCCATGTGGTGATGTGGAGAAGACGAGGCGGGCCATCCGGGTATTCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000155633.8
CDS CCA 90 bp ACATCATCTGTTTTGATCAGGTCCTCCTCCCGAGTCAGTGGCAACTaGGTCTCAGGTTCCCCTCGCAGCTGCAGTGACAGGGAACGCAGC +
Preference number: 5 (lower is better)
Translates to: TSSVLIRSSSRVSGN*VSGSPRSCSDRERS
Trigger: GCTGCGTTCCCTGTCACTGCAGCTGCGAGGGGAACCTGAGACCCAGTTGCCACTGACTCGGGAGGAGGACCTGATCAAAACAGATGATGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp CTCTGGGACCTCCAGGTCAGGAGCTGTGGGACCTACTGGACCTTAGATCCCTCATTGGCCAGGCGCTGCTaGGCAATAATGCAGCGGATA +
Preference number: 5 (lower is better)
Translates to: LWDLQVRSCGTYWTLDPSLARRC*AIMQRI
Trigger: TATCCGCTGCATTATTGCCAAGCAGCGCCTGGCCAA...TGAGGGATCTAAGGTCCAGTAGGTCCCACAGCTCCTGACCTGGAGGTCCCAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp CTACACAGGAGGCCGTTTCTAGGATCCCAGCCTGCTCAGCGAGAGGTCAGAGCATTGGCCAGGCGCTGCTaGGCAATAATGCAGCGGATA +
Preference number: 5 (lower is better)
Translates to: LHRRPFLGSQPAQREVRALARRC*AIMQRI
Trigger: TATCCGCTGCATTATTGCCAAGCAGCGCCTGGCCAA...TGCTCTGACCTCTCGCTGAGCAGGCTGGGATCCTAGAAACGGCCTCCTGTGTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp CAAATGAGTGCTTGGTGGTTGTCTTGTAGGGAGAGGTATGAGGGGCAGTTTTCAGCCTGGATGCGGCCCTaGGCCAGGCGCTGCTTGGCA +
Preference number: 5 (lower is better)
Translates to: QMSAWWLSCRERYEGQFSAWMRP*ARRCLA
Trigger: TGCCAAGCAGCGCCTGGCCAAGGGCCGCATCCAGGC...TGAAAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp TTTCTGTCACGGACACTGGCTAATGGGTCTTTCTTGGATGAAGAGAGAAGGGAGGCCTGGATGCGGCCCTaGGCCAGGCGCTGCTTGGCA +
Preference number: 5 (lower is better)
Translates to: FLSRTLANGSFLDEERREAWMRP*ARRCLA
Trigger: TGCCAAGCAGCGCCTGGCCAAGGGCCGCATCCAGGC...CTCCCTTCTCTCTTCATCCAAGAAAGACCCATTAGCCAGTGTCCGTGACAGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp CAGCTCTCTCAGCCCCTGGACTTTCCACTGAATCTCTCTTTTAGGGAAGGGCAGCTGTTGTCGGCTGGATaGGGAGGTCCAGAAGGGCGG +
Preference number: 5 (lower is better)
Translates to: QLSQPLDFPLNLSFREGQLLSAG*GGPEGR
Trigger: CCGCCCTTCTGGACCTCCCAATCCAGCCGACAACAG...CTGCCCTTCCCTAAAAGAGAGATTCAGTGGAAAGTCCAGGGGCTGAGAGAGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS GCA 90 bp AGGTGCACATCCTTGATGACACAGCCAGAGCTGGTCAGTACTTGCTaGTTCAGGAGCAGGCAGCTCAGCTCCAGTGTAGCCAACCGGATC +
Preference number: 5 (lower is better)
Translates to: RCTSLMTQPELVSTC*FRSRQLSSSVANRI
Trigger: GATCCGGTTGGCTACACTGGAGCTGAGCTGCCTGCTCCTGAAGCAGCAAGTACTGACCAGCTCTGGCTGTGTCATCAAGGATGTGCACCT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS GCA 90 bp TCGTCTTCTCCACATCACCACATGGCAGCCGCTTCACAAAGTCAATaGCAGTCAGTGGAGTGCCCGTTGGGGGCAGGAGGATGGAAGCAT +
Preference number: 5 (lower is better)
Translates to: SSSPHHHMAAASQSQ*QSVECPLGAGGWKH
Trigger: ATGCTTCCATCCTCCTGCCCCCAACGGGCACTCCACTGACTGGCATTGACTTTGTGAAGCGGCTGCCATGTGGTGATGTGGAGAAGACGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS CCA 90 bp CACATCACCACATGGCAGCCGCTTCACAAAGTCAATGCCAGTCAGTaGAGTGCCCGTTGGGGGCAGGAGGATGGAAGCATCCATCATGAG +
Preference number: 5 (lower is better)
Translates to: HITTWQPLHKVNASQ*SARWGQEDGSIHHE
Trigger: CTCATGATGGATGCTTCCATCCTCCTGCCCCCAACGGGCACTCCACTGACTGGCATTGACTTTGTGAAGCGGCTGCCATGTGGTGATGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS CCA 90 bp AGTGATGGATGCCAAGAAACAGTAGTCAGTGCCAGGTACTTCAGGTaGTCCAAGGAGTGGATGTTGCGGGAGGACTTGCTGTGGCCCCCG +
Preference number: 5 (lower is better)
Translates to: SDGCQETVVSARYFR*SKEWMLREDLLWPP
Trigger: CGGGGGCCACAGCAAGTCCTCCCGCAACATCCACTCCTTGGACCACCTGAAGTACCTGGCACTGACTACTGTTTCTTGGCATCCATCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000150894.2
CDS-3UTR CAA 90 bp GCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCAATCCAAGGAGTGGATGTaGCGGGAGGACTTGCTGTGG +
Preference number: 5 (lower is better)
Translates to: ATEKANAILRMQPAYSCQSKEWM*REDLLW
Trigger: CCACAGCAAGTCCTCCCGCAACATCCACTCCTTGGA...TTGGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp GACGTGGCATGCATGGCCTGGGAGATGGGAGCAATGATTTTGGAGGCTGACTCTCACCGGATGCTGGGCTaGGCAGAACTTCTGGGAACA +
Preference number: 5 (lower is better)
Translates to: DVACMAWEMGAMILEADSHRMLG*AELLGT
Trigger: TGTTCCCAGAAGTTCTGCCAAGCCCAGCATCCGGTG...AGAGTCAGCCTCCAAAATCATTGCTCCCATCTCCCAGGCCATGCATGCCACGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp TGGCTGTGGGGTCCACAGAGCTCTTGTTCCCAGTGGCCATCACTTTCCTCTCTTCACCGGATGCTGGGCTaGGCAGAACTTCTGGGAACA +
Preference number: 5 (lower is better)
Translates to: WLWGPQSSCSQWPSLSSLHRMLG*AELLGT
Trigger: TGTTCCCAGAAGTTCTGCCAAGCCCAGCATCCGGTG...AAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTGGACCCCACAGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp AGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCGCCACCTCTGAGAGCTaGCCAAGCTTCATGATCACC +
Preference number: 5 (lower is better)
Translates to: RPQRKPMPSLGCSQPTPAATSES*PSFMIT
Trigger: GGTGATCATGAAGCTTGGCAAGCTCTCAGAGGTGGC...GGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp TGGGCCACAGCAAAGCCTGGCACCTTGTCTACGGATGCAAACACAGAGCGTTGCGCCACCTCTGAGAGCTaGCCAAGCTTCATGATCACC +
Preference number: 5 (lower is better)
Translates to: WATAKPGTLSTDANTERCATSES*PSFMIT
Trigger: GGTGATCATGAAGCTTGGCAAGCTCTCAGAGGTGGC...GCAACGCTCTGTGTTTGCATCCGTAGACAAGGTGCCAGGCTTTGCTGTGGCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CAA 90 bp TGCACGTCAGAGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCAGAGCTGGTCAGTACTaGCTGCTTCAGGAGCAGGCA +
Preference number: 5 (lower is better)
Translates to: CTSEATEKANAILRMQPARAGQY*LLQEQA
Trigger: TGCCTGCTCCTGAAGCAGCAAGTACTGACCAGCTCT...GGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCTCTGACGTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp CAGTGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCGGGAAGACATCATCTGTTTaGATCAGGTCCTCCTCCCGA +
Preference number: 5 (lower is better)
Translates to: QCVSSVLVEQGDGGLLGGKTSSV*IRSSSR
Trigger: TCGGGAGGAGGACCTGATCAAAACAGATGATGTCTT...CCCGCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACACTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115823.2
CDS-3UTR CAA 90 bp ACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGACCATACCACCATCCTaGGTGATGACTGTGCATGCA +
Preference number: 5 (lower is better)
Translates to: TLGGKTKELPKGRCQWVLTIPPS*VMTVHA
Trigger: TGCATGCACAGTCATCACCAAGGATGGTGGTATGGT...CAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp AGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCATCCCAGGACTTCTGTaGTCGGCTGGATTGGGAGGT +
Preference number: 5 (lower is better)
Translates to: RPQRKPMPSLGCSQPTPAIPGLL*SAGLGG
Trigger: ACCTCCCAATCCAGCCGACAACAGAAGTCCTGGGAT...GGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS TCA 90 bp CTGAGGTCCCAGCAGCGGCCACCTCTGAGAGCTTGCCAAGCTTCATaGTCACCATCTCAATCTCTTCACGCTCCCCACTTGTCTTCATGC +
Preference number: 5 (lower is better)
Translates to: LRSQQRPPLRACQAS*SPSQSLHAPHLSSC
Trigger: GCATGAAGACAAGTGGGGAGCGTGAAGAGATTGAGATGGTGATCATGAAGCTTGGCAAGCTCTCAGAGGTGGCCGCTGCTGGGACCTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038145.13
ENSMUST00000115827.8
ENSMUST00000115828.9
CDS-3UTR CAA 90 bp CATGCGCCTGGCCTGGATGCGGCCCTTGGCCAGGCGCTGCTTGGCAATAATGCATGGACAGTGTGGTTGTaGAGCTTTAATGAAAGCGTT +
Preference number: 5 (lower is better)
Translates to: HAPGLDAALGQALLGNNAWTVWL*SFNESV
Trigger: AACGCTTTCATTAAAGCTCAACAACCACACTGTCCA...TGCATTATTGCCAAGCAGCGCCTGGCCAAGGGCCGCATCCAGGCCAGGCGCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CAA 90 bp ATAGAGGGCGCTCACCACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGATGAACCAGACCAAATaGGAGAAGTACGGGACAGCG +
Preference number: 5 (lower is better)
Translates to: IEGAHHHTESDLWEVSHLMNQTK*EKYGTA
Trigger: CGCTGTCCCGTACTTCTCCAATTTGGTCTGGTTCAT...CAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGTGGTGAGCGCCCTCTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp GTGTGTCAGCAGTGTCCTCGTAGAGCAAGGAGATGGTGGGCTGCTGGGCGGGAATCTGTCTGCACACAGTaGTCAAGTTCGATCACATGG +
Preference number: 5 (lower is better)
Translates to: VCQQCPRRARRWWAAGRESVCTQ*SSSITW
Trigger: CCATGTGATCGAACTTGACAACTGTGTGCAGACAGA...TTCCCGCCCAGCAGCCCACCATCTCCTTGCTCTACGAGGACACTGCTGACACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CAA 90 bp ACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGCCTAAGACTTCAACAGGGCAGGAAAAGCCTGTaGAGCAGGTGGTCGGTGAGT +
Preference number: 5 (lower is better)
Translates to: TTLSLTCGKCPTCLRLQQGRKSL*SRWSVS
Trigger: ACTCACCGACCACCTGCTCAACAGGCTTTTCCTGCC...CTGTTGAAGTCTTAGGCAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp TGGCTGTGGGGTCCACAGAGCTCTTGTTCCCAGTGGCCATCACTTTCCTCTCTTAGAAGGCCAGCAAACTaGACCACTCCCCAGCCAAGT +
Preference number: 5 (lower is better)
Translates to: WLWGPQSSCSQWPSLSSLRRPAN*TTPQPS
Trigger: ACTTGGCTGGGGAGTGGTCAAGTTTGCTGGCCTTCT...AAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTGGACCCCACAGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp GACGTGGCATGCATGGCCTGGGAGATGGGAGCAATGATTTTGGAGGCTGACTCTAGAAGGCCAGCAAACTaGACCACTCCCCAGCCAAGT +
Preference number: 5 (lower is better)
Translates to: DVACMAWEMGAMILEADSRRPAN*TTPQPS
Trigger: ACTTGGCTGGGGAGTGGTCAAGTTTGCTGGCCTTCT...AGAGTCAGCCTCCAAAATCATTGCTCCCATCTCCCAGGCCATGCATGCCACGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp CACAGAGCTCTTGTTCCCAGTGGCCATCACTTTCCTCTCTTCCCAGGGGCTAAGATCCCAGGACTTCTGTaGTCGGCTGGATTGGGAGGT +
Preference number: 5 (lower is better)
Translates to: HRALVPSGHHFPLFPGAKIPGLL*SAGLGG
Trigger: ACCTCCCAATCCAGCCGACAACAGAAGTCCTGGGAT...CTTAGCCCCTGGGAAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp ACACTGGGAGGGAAGACAAAGGAGCTGCCCAAAGGACGGTGCCAGTGGGTCCTGTTGCTGGGCTTGGAGTaGACATCCATTTCATTCCCA +
Preference number: 5 (lower is better)
Translates to: TLGGKTKELPKGRCQWVLLLGLE*TSISFP
Trigger: TGGGAATGAAATGGATGTCAACTCCAAGCCCAGCAA...CAGGACCCACTGGCACCGTCCTTTGGGCAGCTCCTTTGTCTTCCCTCCCAGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp GCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCAACTGGCCGATGAGTTCTaGCTGGGCTTGGAGTTGACA +
Preference number: 5 (lower is better)
Translates to: ATEKANAILRMQPAYSCQLADEF*LGLELT
Trigger: TGTCAACTCCAAGCCCAGCAAGAACTCATCGGCCAG...TTGGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS GCA 90 bp ACAAGGTGGACACTCTCTTCTCTTGCACCCTCCAAACAGGCCAGGTaGACATCCTTGATGACACAGCCAGAGCTGGTCAGTACTTGCTGC +
Preference number: 5 (lower is better)
Translates to: TRWTLSSLAPSKQAR*TSLMTQPELVSTCC
Trigger: GCAGCAAGTACTGACCAGCTCTGGCTGTGTCATCAAGGATGTGCACCTGGCCTGTTTGGAGGGTGCAAGAGAAGAGAGTGTCCACCTTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS CCA 90 bp TGGCAGCCGCTTCACAAAGTCAATGCCAGTCAGTGGAGTGCCCGTTaGGGGCAGGAGGATGGAAGCATCCATCATGAGATACTCCACATT +
Preference number: 5 (lower is better)
Translates to: WQPLHKVNASQWSAR*GQEDGSIHHEILHI
Trigger: AATGTGGAGTATCTCATGATGGATGCTTCCATCCTCCTGCCCCCAACGGGCACTCCACTGACTGGCATTGACTTTGTGAAGCGGCTGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp TTTCATTCCCAATCACTGACTGGTCTAGGTGAGGCTGAGGCTGTTCTGGAGTCGTCCAAGGAGTGGATGTaGCGGGAGGACTTGCTGTGG +
Preference number: 5 (lower is better)
Translates to: FHSQSLTGLGEAEAVLESSKEWM*REDLLW
Trigger: CCACAGCAAGTCCTCCCGCAACATCCACTCCTTGGA...CGACTCCAGAACAGCCTCAGCCTCACCTAGACCAGTCAGTGATTGGGAATGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CAA 90 bp CTCTGGGACCTCCAGGTCAGGAGCTGTGGGACCTACTGGACCTTAGATCCCTCACACAGAGCTGTCATTTaGATCGCCCCAAATCAGGAT +
Preference number: 5 (lower is better)
Translates to: LWDLQVRSCGTYWTLDPSHRAVI*IAPNQD
Trigger: ATCCTGATTTGGGGCGATCAAAATGACAGCTCTGTG...TGAGGGATCTAAGGTCCAGTAGGTCCCACAGCTCCTGACCTGGAGGTCCCAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp GAAGAGAGTCATTCATTCCCCCACCCGCCCCAGCCGGTGGCACCTTCTGCATATTTGAGGAACTCGCAGTaGATGATCAGGATGTCGTTG +
Preference number: 5 (lower is better)
Translates to: EESHSFPHPPQPVAPSAYLRNSQ*MIRMSL
Trigger: CAACGACATCCTGATCATCAACTGCGAGTTCCTCAA...ATATGCAGAAGGTGCCACCGGCTGGGGCGGGTGGGGGAATGAATGACTCTCTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CAA 90 bp AGGCCTGTGGGTACTGGGACTTCCTCACTCATGGCTTCCCTTGTCAGGGGACCATTTTGCATCCGCTTCTaGCCCTTGTGCTTGTTCATC +
Preference number: 5 (lower is better)
Translates to: RPVGTGTSSLMASLVRGPFCIRF*PLCLFI
Trigger: GATGAACAAGCACAAGGGCAAGAAGCGGATGCAAAA...TGGTCCCCTGACAAGGGAAGCCATGAGTGAGGAAGTCCCAGTACCCACAGGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CAA 90 bp AGGCCTGTGGGTACTGGGACTTCCTCACTCATGGCTTCCCTTGTCAGGGGACCATTTTCTCAGCTTCACTaGGCACTGGGAGCTGAATTC +
Preference number: 5 (lower is better)
Translates to: RPVGTGTSSLMASLVRGPFSQLH*ALGAEF
Trigger: GAATTCAGCTCCCAGTGCCAAGTGAAGCTGAGAAAA...TGGTCCCCTGACAAGGGAAGCCATGAGTGAGGAAGTCCCAGTACCCACAGGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CAA 90 bp GAAGAGAGTCATTCATTCCCCCACCCGCCCCAGCCGGTGGCACCTTCTGCATATAAGACATCATCTGTTTaGATCAGGTCCTCCTCCCGA +
Preference number: 5 (lower is better)
Translates to: EESHSFPHPPQPVAPSAYKTSSV*IRSSSR
Trigger: TCGGGAGGAGGACCTGATCAAAACAGATGATGTCTT...ATATGCAGAAGGTGCCACCGGCTGGGGCGGGTGGGGGAATGAATGACTCTCTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CAA 90 bp CTCTGGGACCTCCAGGTCAGGAGCTGTGGGACCTACTGGACCTTAGATCCCTCAAAGACATCATCTGTTTaGATCAGGTCCTCCTCCCGA +
Preference number: 5 (lower is better)
Translates to: LWDLQVRSCGTYWTLDPSKTSSV*IRSSSR
Trigger: TCGGGAGGAGGACCTGATCAAAACAGATGATGTCTT...TGAGGGATCTAAGGTCCAGTAGGTCCCACAGCTCCTGACCTGGAGGTCCCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp CTCTGGGACCTCCAGGTCAGGAGCTGTGGGACCTACTGGACCTTAGATCCCTCATTGCTGGGCTTGGAGTaGACATCCATTTCATTCCCA +
Preference number: 5 (lower is better)
Translates to: LWDLQVRSCGTYWTLDPSLLGLE*TSISFP
Trigger: TGGGAATGAAATGGATGTCAACTCCAAGCCCAGCAA...TGAGGGATCTAAGGTCCAGTAGGTCCCACAGCTCCTGACCTGGAGGTCCCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp ACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGCCTAAGACTTCAACAGCTGGCCGATGAGTTCTaGCTGGGCTTGGAGTTGACA +
Preference number: 5 (lower is better)
Translates to: TTLSLTCGKCPTCLRLQQLADEF*LGLELT
Trigger: TGTCAACTCCAAGCCCAGCAAGAACTCATCGGCCAG...CTGTTGAAGTCTTAGGCAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp CTGGGCCACAGCAAAGCCTGGCACCTTGTCTACGGATGCAAACACAGAGCGTTGCACAGAGCTGTCATTTaGATCGCCCCAAATCAGGAT +
Preference number: 5 (lower is better)
Translates to: LGHSKAWHLVYGCKHRALHRAVI*IAPNQD
Trigger: ATCCTGATTTGGGGCGATCAAAATGACAGCTCTGTG...CAACGCTCTGTGTTTGCATCCGTAGACAAGGTGCCAGGCTTTGCTGTGGCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CAA 90 bp ACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACCCCATCATGAACCAGACCAAATaGGAGAAGTACGGGACAGCG +
Preference number: 5 (lower is better)
Translates to: TVSFFRVLRSCCFLQDPIMNQTK*EKYGTA
Trigger: CGCTGTCCCGTACTTCTCCAATTTGGTCTGGTTCAT...GATGGGGTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp GGGATGGAGAGCTATGCTGGTTTATGCACTGGGCCACAGCAAAGCCTGGCACCTTTTTGCATCCGCTTCTaGCCCTTGTGCTTGTTCATC +
Preference number: 5 (lower is better)
Translates to: GMESYAGLCTGPQQSLAPFCIRF*PLCLFI
Trigger: GATGAACAAGCACAAGGGCAAGAAGCGGATGCAAAA...AGGTGCCAGGCTTTGCTGTGGCCCAGTGCATAAACCAGCATAGCTCTCCATCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CAA 90 bp AGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCTTTTGCATCCGCTTCTaGCCCTTGTGCTTGTTCATC +
Preference number: 5 (lower is better)
Translates to: RPQRKPMPSLGCSQPTPAFCIRF*PLCLFI
Trigger: GATGAACAAGCACAAGGGCAAGAAGCGGATGCAAAA...GGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp GGGCCACAGCAAAGCCTGGCACCTTGTCTACGGATGCAAACACAGAGCGTTGCATTTTCTCAGCTTCACTaGGCACTGGGAGCTGAATTC +
Preference number: 5 (lower is better)
Translates to: GPQQSLAPCLRMQTQSVAFSQLH*ALGAEF
Trigger: GAATTCAGCTCCCAGTGCCAAGTGAAGCTGAGAAAA...TGCAACGCTCTGTGTTTGCATCCGTAGACAAGGTGCCAGGCTTTGCTGTGGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CAA 90 bp CCTGAACGTGCAAGGGTTAAGAGCAGGGGAGAGCCTGGCCAGTTTTCTAAGATTAGAGCTGGTCAGTACTaGCTGCTTCAGGAGCAGGCA +
Preference number: 5 (lower is better)
Translates to: PERARVKSRGEPGQFSKIRAGQY*LLQEQA
Trigger: TGCCTGCTCCTGAAGCAGCAAGTACTGACCAGCTCT...AATCTTAGAAAACTGGCCAGGCTCTCCCCTGCTCTTAACCCTTGCACGTTCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CAA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGTCAGTGGAGTGCCCGTaGGGGGCAGGAGGATGGAAG +
Preference number: 5 (lower is better)
Translates to: TQPSVLENILSLTACPLESVECP*GAGGWK
Trigger: CTTCCATCCTCCTGCCCCCAACGGGCACTCCACTGA...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp AGGCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCAAGACATCATCTGTTTaGATCAGGTCCTCCTCCCGA +
Preference number: 5 (lower is better)
Translates to: RPQRKPMPSLGCSQPTPAKTSSV*IRSSSR
Trigger: TCGGGAGGAGGACCTGATCAAAACAGATGATGTCTT...GGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp GCCACAGAGAAAGCCAATGCCATCCTTAGGATGCAGCCAGCCTACTCCTGCCAAACCATACCACCATCCTaGGTGATGACTGTGCATGCA +
Preference number: 5 (lower is better)
Translates to: ATEKANAILRMQPAYSCQTIPPS*VMTVHA
Trigger: TGCATGCACAGTCATCACCAAGGATGGTGGTATGGT...TTGGCAGGAGTAGGCTGGCTGCATCCTAAGGATGGCATTGGCTTTCTCTGTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGCTGTTGTCGGCTGGATaGGGAGGTCCAGAAGGGCGG +
Preference number: 5 (lower is better)
Translates to: TQPSVLENILSLTACPLELLSAG*GGPEGR
Trigger: CCGCCCTTCTGGACCTCCCAATCCAGCCGACAACAG...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS CCA 90 bp CGGTGCTCCTCATCTGTCTGCACACAGTTGTCAAGTTCGATCACATaGCTCCCAATGAACCAGACCAAATTGGAGAAGTACGGGACAGCG +
Preference number: 5 (lower is better)
Translates to: RCSSSVCTQLSSSIT*LPMNQTKLEKYGTA
Trigger: CGCTGTCCCGTACTTCTCCAATTTGGTCTGGTTCATTGGGAGCCATGTGATCGAACTTGACAACTGTGTGCAGACAGATGAGGAGCACCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS CCA 90 bp TTCATGATCACCATCTCAATCTCTTTAGTCTTCTCAGCGTCTTCCTaGGCATCTTCAGCAGACCCTCTCTCCTCGTCCTCCTCCTCCCCA +
Preference number: 5 (lower is better)
Translates to: FMITISISLVFSASS*ASSADPLSSSSSSP
Trigger: TGGGGAGGAGGAGGACGAGGAGAGAGGGTCTGCTGAAGATGCCCAGGAAGACGCTGAGAAGACTAAAGAGATTGAGATGGTGATCATGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp TTTCTGTCACGGACACTGGCTAATGGGTCTTTCTTGGATGAAGAGAGAAGGGAGTCCAAGGAGTGGATGTaGCGGGAGGACTTGCTGTGG +
Preference number: 5 (lower is better)
Translates to: FLSRTLANGSFLDEERRESKEWM*REDLLW
Trigger: CCACAGCAAGTCCTCCCGCAACATCCACTCCTTGGA...CTCCCTTCTCTCTTCATCCAAGAAAGACCCATTAGCCAGTGTCCGTGACAGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp ACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACCCCATCGAGCAGGTTCCGATTTaGTTCTGTGACAGTGGTGTT +
Preference number: 5 (lower is better)
Translates to: TVSFFRVLRSCCFLQDPIEQVPI*FCDSGV
Trigger: AACACCACTGTCACAGAACAAAATCGGAACCTGCTC...GATGGGGTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp GGTGAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACGAGCAGGTTCCGATTTaGTTCTGTGACAGTGGTGTT +
Preference number: 5 (lower is better)
Translates to: GETVSFFRVLRSCCFLQDEQVPI*FCDSGV
Trigger: AACACCACTGTCACAGAACAAAATCGGAACCTGCTC...GTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp GGTGAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACCACAGAGCTGTCATTTaGATCGCCCCAAATCAGGAT +
Preference number: 5 (lower is better)
Translates to: GETVSFFRVLRSCCFLQDHRAVI*IAPNQD
Trigger: ATCCTGATTTGGGGCGATCAAAATGACAGCTCTGTG...GTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp GTTCTAGCCCTGAACGTGCAAGGGTTAAGAGCAGGGGAGAGCCTGGCCAGTTTTTCTGTCTGCACACAGTaGTCAAGTTCGATCACATGG +
Preference number: 5 (lower is better)
Translates to: VLALNVQGLRAGESLASFSVCTQ*SSSITW
Trigger: CCATGTGATCGAACTTGACAACTGTGTGCAGACAGA...AAAACTGGCCAGGCTCTCCCCTGCTCTTAACCCTTGCACGTTCAGGGCTAGAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CAA 90 bp TGGCTGTGGGGTCCACAGAGCTCTTGTTCCCAGTGGCCATCACTTTCCTCTCTTTCTGTCTGCACACAGTaGTCAAGTTCGATCACATGG +
Preference number: 5 (lower is better)
Translates to: WLWGPQSSCSQWPSLSSLSVCTQ*SSSITW
Trigger: CCATGTGATCGAACTTGACAACTGTGTGCAGACAGA...AAGAGAGGAAAGTGATGGCCACTGGGAACAAGAGCTCTGTGGACCCCACAGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp AGACTTCAACAGGGAGGAGGCAGCACTGCATGTTGCCATGGTGACGGTCAAAGCTCTGTCTGCACACAGTaGTCAAGTTCGATCACATGG +
Preference number: 5 (lower is better)
Translates to: RLQQGGGSTACCHGDGQSSVCTQ*SSSITW
Trigger: CCATGTGATCGAACTTGACAACTGTGTGCAGACAGA...GCTTTGACCGTCACCATGGCAACATGCAGTGCTGCCTCCTCCCTGTTGAAGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp GACGTGGCATGCATGGCCTGGGAGATGGGAGCAATGATTTTGGAGGCTGACTCTTTGAGGAACTCGCAGTaGATGATCAGGATGTCGTTG +
Preference number: 5 (lower is better)
Translates to: DVACMAWEMGAMILEADSLRNSQ*MIRMSL
Trigger: CAACGACATCCTGATCATCAACTGCGAGTTCCTCAA...AGAGTCAGCCTCCAAAATCATTGCTCCCATCTCCCAGGCCATGCATGCCACGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp CAAATGAGTGCTTGGTGGTTGTCTTGTAGGGAGAGGTATGAGGGGCAGTTTTCAGGCAGGAAAAGCCTGTaGAGCAGGTGGTCGGTGAGT +
Preference number: 5 (lower is better)
Translates to: QMSAWWLSCRERYEGQFSGRKSL*SRWSVS
Trigger: ACTCACCGACCACCTGCTCAACAGGCTTTTCCTGCC...TGAAAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp GGTGAGACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACTTTTGCATCCGCTTCTaGCCCTTGTGCTTGTTCATC +
Preference number: 5 (lower is better)
Translates to: GETVSFFRVLRSCCFLQDFCIRF*PLCLFI
Trigger: GATGAACAAGCACAAGGGCAAGAAGCGGATGCAAAA...GTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGTCTCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp AGACTTCAACAGGGAGGAGGCAGCACTGCATGTTGCCATGGTGACGGTCAAAGCTTTTCTCAGCTTCACTaGGCACTGGGAGCTGAATTC +
Preference number: 5 (lower is better)
Translates to: RLQQGGGSTACCHGDGQSFSQLH*ALGAEF
Trigger: GAATTCAGCTCCCAGTGCCAAGTGAAGCTGAGAAAA...GCTTTGACCGTCACCATGGCAACATGCAGTGCTGCCTCCTCCCTGTTGAAGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp TTAGACCATGTCGAAGCAGGAAGGAGGCTGCTCTTCTTAAGAAGCAGCTCTCTCTTGGCCAGGCGCTGCTaGGCAATAATGCAGCGGATA +
Preference number: 5 (lower is better)
Translates to: LDHVEAGRRLLFLRSSSLLARRC*AIMQRI
Trigger: TATCCGCTGCATTATTGCCAAGCAGCGCCTGGCCAA...GAGAGAGCTGCTTCTTAAGAAGAGCAGCCTCCTTCCTGCTTCGACATGGTCTAA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CAA 90 bp GACGTGGCATGCATGGCCTGGGAGATGGGAGCAATGATTTTGGAGGCTGACTCTGAGTTCTTGCTGGGCTaGGAGTTGACATCCATTTCA +
Preference number: 5 (lower is better)
Translates to: DVACMAWEMGAMILEADSEFLLG*ELTSIS
Trigger: TGAAATGGATGTCAACTCCAAGCCCAGCAAGAACTC...AGAGTCAGCCTCCAAAATCATTGCTCCCATCTCCCAGGCCATGCATGCCACGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS TCA 90 bp TCAGTGGAGTGCCCGTTGGGGGCAGGAGGATGGAAGCATCCATCATaGGATACTCCACATTCATGGGCTTTATTGTCATGCTCCTGTACT +
Preference number: 5 (lower is better)
Translates to: SVECPLGAGGWKHPS*DTPHSWALLSCSCT
Trigger: AGTACAGGAGCATGACAATAAAGCCCATGAATGTGGAGTATCTCATGATGGATGCTTCCATCCTCCTGCCCCCAACGGGCACTCCACTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGTCCAAGGAGTGGATGTaGCGGGAGGACTTGCTGTGG +
Preference number: 5 (lower is better)
Translates to: TQPSVLENILSLTACPLESKEWM*REDLLW
Trigger: CCACAGCAAGTCCTCCCGCAACATCCACTCCTTGGA...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp GAAGAGAGTCATTCATTCCCCCACCCGCCCCAGCCGGTGGCACCTTCTGCATATAAATGGACAGTGTGGTaGTTGAGCTTTAATGAAAGC +
Preference number: 5 (lower is better)
Translates to: EESHSFPHPPQPVAPSAYKWTVW*LSFNES
Trigger: GCTTTCATTAAAGCTCAACAACCACACTGTCCATTT...ATATGCAGAAGGTGCCACCGGCTGGGGCGGGTGGGGGAATGAATGACTCTCTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CAA 90 bp AGCAAACTTGACCACTCCCCAGCCAAGTCTGGATACGTCAGGCTCCACCAGGCTTTGTCTTCATGCTTTTaGAACCACCCTCTGTACCTT +
Preference number: 5 (lower is better)
Translates to: SKLDHSPAKSGYVRLHQALSSCF*NHPLYL
Trigger: AAGGTACAGAGGGTGGTTCAAAAAGCATGAAGACAA...AGCCTGGTGGAGCCTGACGTATCCAGACTTGGCTGGGGAGTGGTCAAGTTTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CAA 90 bp CAAATGAGTGCTTGGTGGTTGTCTTGTAGGGAGAGGTATGAGGGGCAGTTTTCAGCCACCTCTGAGAGCTaGCCAAGCTTCATGATCACC +
Preference number: 5 (lower is better)
Translates to: QMSAWWLSCRERYEGQFSATSES*PSFMIT
Trigger: GGTGATCATGAAGCTTGGCAAGCTCTCAGAGGTGGC...TGAAAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp ACCACACTGAGTCTGACCTGTGGGAAGTGTCCCACCTGCCTAAGACTTCAACAGTTTTCTCAGCTTCACTaGGCACTGGGAGCTGAATTC +
Preference number: 5 (lower is better)
Translates to: TTLSLTCGKCPTCLRLQQFSQLH*ALGAEF
Trigger: GAATTCAGCTCCCAGTGCCAAGTGAAGCTGAGAAAA...CTGTTGAAGTCTTAGGCAGGTGGGACACTTCCCACAGGTCAGACTCAGTGTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp CAAATGAGTGCTTGGTGGTTGTCTTGTAGGGAGAGGTATGAGGGGCAGTTTTCAAGAGCTGGTCAGTACTaGCTGCTTCAGGAGCAGGCA +
Preference number: 5 (lower is better)
Translates to: QMSAWWLSCRERYEGQFSRAGQY*LLQEQA
Trigger: TGCCTGCTCCTGAAGCAGCAAGTACTGACCAGCTCT...TGAAAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGGCCTGGATGCGGCCCTaGGCCAGGCGCTGCTTGGCA +
Preference number: 5 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRAWMRP*ARRCLA
Trigger: TGCCAAGCAGCGCCTGGCCAAGGGCCGCATCCAGGC...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CAA 90 bp CAAATGAGTGCTTGGTGGTTGTCTTGTAGGGAGAGGTATGAGGGGCAGTTTTCAATCCCAGGACTTCTGTaGTCGGCTGGATTGGGAGGT +
Preference number: 5 (lower is better)
Translates to: QMSAWWLSCRERYEGQFSIPGLL*SAGLGG
Trigger: ACCTCCCAATCCAGCCGACAACAGAAGTCCTGGGAT...TGAAAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp CTGTTCACATATTCTGGAGCAAAAGGGACTTCTTCACATTCTATCAAATCTTGTATGTTGCGGGAGGACTaGCTGTGGCCCCCGCCCACC +
Preference number: 5 (lower is better)
Translates to: LFTYSGAKGTSSHSIKSCMLRED*LWPPPT
Trigger: GGTGGGCGGGGGCCACAGCAAGTCCTCCCGCAACAT...ACAAGATTTGATAGAATGTGAAGAAGTCCCTTTTGCTCCAGAATATGTGAACAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CAA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGATGTTGCGGGAGGACTaGCTGTGGCCCCCGCCCACC +
Preference number: 5 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRMLRED*LWPPPT
Trigger: GGTGGGCGGGGGCCACAGCAAGTCCTCCCGCAACAT...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CAA 90 bp CCCTCTGGGAGCAACCTTAAAGCCAGCTGTGGGAACAGGCTTATTGTTGGTGAACACAGAGCTGTCATTTaGATCGCCCCAAATCAGGAT +
Preference number: 5 (lower is better)
Translates to: PSGSNLKASCGNRLIVGEHRAVI*IAPNQD
Trigger: ATCCTGATTTGGGGCGATCAAAATGACAGCTCTGTG...TTCACCAACAATAAGCCTGTTCCCACAGCTGGCTTTAAGGTTGCTCCCAGAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp TGTAGGGAGAGGTATGAGGGGCAGTTTTCAGGGCCACGGAGAATTGTGGGTGCTTGGACAGTGTGGTTGTaGAGCTTTAATGAAAGCGTT +
Preference number: 5 (lower is better)
Translates to: CRERYEGQFSGPRRIVGAWTVWL*SFNESV
Trigger: AACGCTTTCATTAAAGCTCAACAACCACACTGTCCA...AGCACCCACAATTCTCCGTGGCCCTGAAAACTGCCCCTCATACCTCTCCCTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp AGCAAACTTGACCACTCCCCAGCCAAGTCTGGATACGTCAGGCTCCACCAGGCTAAATGGACAGTGTGGTaGTTGAGCTTTAATGAAAGC +
Preference number: 5 (lower is better)
Translates to: SKLDHSPAKSGYVRLHQAKWTVW*LSFNES
Trigger: GCTTTCATTAAAGCTCAACAACCACACTGTCCATTT...AGCCTGGTGGAGCCTGACGTATCCAGACTTGGCTGGGGAGTGGTCAAGTTTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CAA 90 bp TTTCATTCCCAATCACTGACTGGTCTAGGTGAGGCTGAGGCTGTTCTGGAGTCGTTGAGGAACTCGCAGTaGATGATCAGGATGTCGTTG +
Preference number: 5 (lower is better)
Translates to: FHSQSLTGLGEAEAVLESLRNSQ*MIRMSL
Trigger: CAACGACATCCTGATCATCAACTGCGAGTTCCTCAA...CGACTCCAGAACAGCCTCAGCCTCACCTAGACCAGTCAGTGATTGGGAATGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS-3UTR CAA 90 bp GTTCTAGCCCTGAACGTGCAAGGGTTAAGAGCAGGGGAGAGCCTGGCCAGTTTTTTGTCTTCATGCTTTTaGAACCACCCTCTGTACCTT +
Preference number: 5 (lower is better)
Translates to: VLALNVQGLRAGESLASFLSSCF*NHPLYL
Trigger: AAGGTACAGAGGGTGGTTCAAAAAGCATGAAGACAA...AAAACTGGCCAGGCTCTCCCCTGCTCTTAACCCTTGCACGTTCAGGGCTAGAAC
50% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS TCA 90 bp CATCTGTCTGCACACAGTTGTCAAGTTCGATCACATGGCTCCCAATaGACCAGACCAAATTGGAGAAGTACGGGACAGCGGTTTTGTCTC +
Preference number: 5 (lower is better)
Translates to: HLSAHSCQVRSHGSQ*TRPNWRSTGQRFCL
Trigger: GAGACAAAACCGCTGTCCCGTACTTCTCCAATTTGGTCTGGTTCATTGGGAGCCATGTGATCGAACTTGACAACTGTGTGCAGACAGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp CTTTCTCTTGGAAAACTGAGCATTGGGGCCTGCAGGGAAGTTAGCTTAGCAGAGGAGCAGGTTCCGATTTaGTTCTGTGACAGTGGTGTT +
Preference number: 5 (lower is better)
Translates to: LSLGKLSIGACREVSLAEEQVPI*FCDSGV
Trigger: AACACCACTGTCACAGAACAAAATCGGAACCTGCTC...CTCTGCTAAGCTAACTTCCCTGCAGGCCCCAATGCTCAGTTTTCCAAGAGAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp ACAGTGTCCTTCTTCAGAGTCCTGAGGTCCTGTTGCTTCCTCCAGGACCCCATCAAATGGACAGTGTGGTaGTTGAGCTTTAATGAAAGC +
Preference number: 5 (lower is better)
Translates to: TVSFFRVLRSCCFLQDPIKWTVW*LSFNES
Trigger: GCTTTCATTAAAGCTCAACAACCACACTGTCCATTT...GATGGGGTCCTGGAGGAAGCAACAGGACCTCAGGACTCTGAAGAAGGACACTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGGGCCGTTCTCCTCCCTaGTCGGGGTTCTCCAGGGAG +
Preference number: 5 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRGRSPP*SGFSRE
Trigger: CTCCCTGGAGAACCCCGACAAGGGAGGAGAACGGCC...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CAA 90 bp TCAAATTACAAGAAAGTTCTAGCTTCCATTCCTCCCCTCAGGTTCAGTCCCCACGCAAAGCCTGGCACCTaGTCTACGGATGCAAACACA +
Preference number: 5 (lower is better)
Translates to: SNYKKVLASIPPLRFSPHAKPGT*STDANT
Trigger: TGTGTTTGCATCCGTAGACAAGGTGCCAGGCTTTGC...GTGGGGACTGAACCTGAGGGGAGGAATGGAAGCTAGAACTTTCTTGTAATTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp CCCTCTGGGAGCAACCTTAAAGCCAGCTGTGGGAACAGGCTTATTGTTGGTGAATGGACAGTGTGGTTGTaGAGCTTTAATGAAAGCGTT +
Preference number: 5 (lower is better)
Translates to: PSGSNLKASCGNRLIVGEWTVWL*SFNESV
Trigger: AACGCTTTCATTAAAGCTCAACAACCACACTGTCCA...TTCACCAACAATAAGCCTGTTCCCACAGCTGGCTTTAAGGTTGCTCCCAGAGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp CAAATGAGTGCTTGGTGGTTGTCTTGTAGGGAGAGGTATGAGGGGCAGTTTTCATCTGTCTGCACACAGTaGTCAAGTTCGATCACATGG +
Preference number: 5 (lower is better)
Translates to: QMSAWWLSCRERYEGQFSSVCTQ*SSSITW
Trigger: CCATGTGATCGAACTTGACAACTGTGTGCAGACAGA...TGAAAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp CAAATGAGTGCTTGGTGGTTGTCTTGTAGGGAGAGGTATGAGGGGCAGTTTTCATTTTCTCAGCTTCACTaGGCACTGGGAGCTGAATTC +
Preference number: 5 (lower is better)
Translates to: QMSAWWLSCRERYEGQFSFSQLH*ALGAEF
Trigger: GAATTCAGCTCCCAGTGCCAAGTGAAGCTGAGAAAA...TGAAAACTGCCCCTCATACCTCTCCCTACAAGACAACCACCAAGCACTCATTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTATCAGTGGAGTGCCCGTaGGGGGCAGGAGGATGGAAG +
Preference number: 5 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLSVECP*GAGGWK
Trigger: CTTCCATCCTCCTGCCCCCAACGGGCACTCCACTGA...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CAA 90 bp CAGTTTTCTAAGATTTACAATCAAGAGAAGAGAGTCATTCATTCCCCCACCCGCAGAAGGCCAGCAAACTaGACCACTCCCCAGCCAAGT +
Preference number: 5 (lower is better)
Translates to: QFSKIYNQEKRVIHSPTRRRPAN*TTPQPS
Trigger: ACTTGGCTGGGGAGTGGTCAAGTTTGCTGGCCTTCT...GCGGGTGGGGGAATGAATGACTCTCTTCTCTTGATTGTAAATCTTAGAAAACTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CAA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGCTGTTGTCGGCTGGATaGGGAGGTCCAGAAGGGCGG +
Preference number: 5 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRLLSAG*GGPEGR
Trigger: CCGCCCTTCTGGACCTCCCAATCCAGCCGACAACAG...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CAA 90 bp TTTCTGTCACGGACACTGGCTAATGGGTCTTTCTTGGATGAAGAGAGAAGGGAGGAGTTCTTGCTGGGCTaGGAGTTGACATCCATTTCA +
Preference number: 5 (lower is better)
Translates to: FLSRTLANGSFLDEERREEFLLG*ELTSIS
Trigger: TGAAATGGATGTCAACTCCAAGCCCAGCAAGAACTC...CTCCCTTCTCTCTTCATCCAAGAAAGACCCATTAGCCAGTGTCCGTGACAGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS TCA 90 bp ATGCAATCAAGTCACTGTTATTCAGATCCAAGACATCATCTGTTTTaGTCAGGTCCTCCTCCCGAGTCAGTGGCAACTGGGTCTCAGGTT +
Preference number: 5 (lower is better)
Translates to: MQSSHCYSDPRHHLF*SGPPPESVATGSQV
Trigger: AACCTGAGACCCAGTTGCCACTGACTCGGGAGGAGGACCTGATCAAAACAGATGATGTCTTGGATCTGAATAACAGTGACTTGATTGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGAAGACATCATCTGTTTaGATCAGGTCCTCCTCCCGA +
Preference number: 5 (lower is better)
Translates to: TQPSVLENILSLTACPLEKTSSV*IRSSSR
Trigger: TCGGGAGGAGGACCTGATCAAAACAGATGATGTCTT...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS TCA 90 bp AACATATTCTTCTCCAGGAAGAAGTCAAACACAGAGCTGTCATTTTaGTCGCCCCAAATCAGGATCTCAGTGATGGAACGGATGGTCTCC +
Preference number: 5 (lower is better)
Translates to: NIFFSRKKSNTELSF*SPQIRISVMERMVS
Trigger: GGAGACCATCCGTTCCATCACTGAGATCCTGATTTGGGGCGATCAAAATGACAGCTCTGTGTTTGACTTCTTCCTGGAGAAGAATATGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS GCA 90 bp CAGGAACCGCTGGACCATACCACCATCCTTGGTGATGACTGTGCATaGAATCAAGTCACTGTTATTCAGATCCAAGACATCATCTGTTTT +
Preference number: 5 (lower is better)
Translates to: QEPLDHTTILGDDCA*NQVTVIQIQDIICF
Trigger: AAAACAGATGATGTCTTGGATCTGAATAACAGTGACTTGATTGCATGCACAGTCATCACCAAGGATGGTGGTATGGTCCAGCGGTTCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTATCCAAGGAGTGGATGTaGCGGGAGGACTTGCTGTGG +
Preference number: 5 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLSKEWM*REDLLW
Trigger: CCACAGCAAGTCCTCCCGCAACATCCACTCCTTGGA...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CAA 90 bp TTTCTGTCACGGACACTGGCTAATGGGTCTTTCTTGGATGAAGAGAGAAGGGAGTGGACAGTGTGGTTGTaGAGCTTTAATGAAAGCGTT +
Preference number: 5 (lower is better)
Translates to: FLSRTLANGSFLDEERREWTVWL*SFNESV
Trigger: AACGCTTTCATTAAAGCTCAACAACCACACTGTCCA...CTCCCTTCTCTCTTCATCCAAGAAAGACCCATTAGCCAGTGTCCGTGACAGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp ATCTCTCATCCTCAACTCTCAGCACTAATTAGTCAAGAAATGTCCAAGAAACATGGCAGGAAAAGCCTGTaGAGCAGGTGGTCGGTGAGT +
Preference number: 5 (lower is better)
Translates to: ISHPQLSALISQEMSKKHGRKSL*SRWSVS
Trigger: ACTCACCGACCACCTGCTCAACAGGCTTTTCCTGCC...ATGTTTCTTGGACATTTCTTGACTAATTAGTGCTGAGAGTTGAGGATGAGAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CAA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGGGCAGGAAAAGCCTGTaGAGCAGGTGGTCGGTGAGT +
Preference number: 5 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRGRKSL*SRWSVS
Trigger: ACTCACCGACCACCTGCTCAACAGGCTTTTCCTGCC...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CAA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGCACCGGATGCTGGGCTaGGCAGAACTTCTGGGAACA +
Preference number: 5 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRHRMLG*AELLGT
Trigger: TGTTCCCAGAAGTTCTGCCAAGCCCAGCATCCGGTG...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CAA 90 bp TCTCTCTCATCTTGTTCAGAAGTACCTCAGTGTTTCAGGGAGAGACATCATCACTTTTGCATCCGCTTCTaGCCCTTGTGCTTGTTCATC +
Preference number: 5 (lower is better)
Translates to: SLSSCSEVPQCFRERHHHFCIRF*PLCLFI
Trigger: GATGAACAAGCACAAGGGCAAGAAGCGGATGCAAAA...GTGATGATGTCTCTCCCTGAAACACTGAGGTACTTCTGAACAAGATGAGAGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS TCA 90 bp TTCAAAGTGATGGTTCTCACGGCAATTCGAACCATGCTTTCGGGATaGTTGAAGAACTTGATGGCTTCTGTGTACAGGGCAAAGTCATTG +
Preference number: 5 (lower is better)
Translates to: FKVMVLTAIRTMLSG*LKNLMASVYRAKSL
Trigger: CAATGACTTTGCCCTGTACACAGAAGCCATCAAGTTCTTCAATCATCCCGAAAGCATGGTTCGAATTGCCGTGAGAACCATCACTTTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp TGTTCACATATTCTGGAGCAAAAGGGACTTCTTCACATTCTATCAAATCTTGTTTCCAAGGAGTGGATGTaGCGGGAGGACTTGCTGTGG +
Preference number: 5 (lower is better)
Translates to: CSHILEQKGLLHILSNLVSKEWM*REDLLW
Trigger: CCACAGCAAGTCCTCCCGCAACATCCACTCCTTGGA...AACAAGATTTGATAGAATGTGAAGAAGTCCCTTTTGCTCCAGAATATGTGAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CAA 90 bp CTCCTAGTCACCTTACATGAAGGACGAAATCTCTCATCCTCAACTCTCAGCACTTGGACAGTGTGGTTGTaGAGCTTTAATGAAAGCGTT +
Preference number: 5 (lower is better)
Translates to: LLVTLHEGRNLSSSTLSTWTVWL*SFNESV
Trigger: AACGCTTTCATTAAAGCTCAACAACCACACTGTCCA...AGTGCTGAGAGTTGAGGATGAGAGATTTCGTCCTTCATGTAAGGTGACTAGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CAA 90 bp TGTTCACATATTCTGGAGCAAAAGGGACTTCTTCACATTCTATCAAATCTTGTTCACCGGATGCTGGGCTaGGCAGAACTTCTGGGAACA +
Preference number: 5 (lower is better)
Translates to: CSHILEQKGLLHILSNLVHRMLG*AELLGT
Trigger: TGTTCCCAGAAGTTCTGCCAAGCCCAGCATCCGGTG...AACAAGATTTGATAGAATGTGAAGAAGTCCCTTTTGCTCCAGAATATGTGAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CAA 90 bp GTTCACATATTCTGGAGCAAAAGGGACTTCTTCACATTCTATCAAATCTTGTTGGCCACCTCTGAGAGCTaGCCAAGCTTCATGATCACC +
Preference number: 5 (lower is better)
Translates to: VHIFWSKRDFFTFYQILLATSES*PSFMIT
Trigger: GGTGATCATGAAGCTTGGCAAGCTCTCAGAGGTGGC...CAACAAGATTTGATAGAATGTGAAGAAGTCCCTTTTGCTCCAGAATATGTGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CAA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAGCCACCTCTGAGAGCTaGCCAAGCTTCATGATCACC +
Preference number: 5 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLATSES*PSFMIT
Trigger: GGTGATCATGAAGCTTGGCAAGCTCTCAGAGGTGGC...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CAA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGAGCTGGTCAGTACTaGCTGCTTCAGGAGCAGGCA +
Preference number: 5 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLRAGQY*LLQEQA
Trigger: TGCCTGCTCCTGAAGCAGCAAGTACTGACCAGCTCT...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CAA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGAGAAGGCCAGCAAACTaGACCACTCCCCAGCCAAGT +
Preference number: 5 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRRRPAN*TTPQPS
Trigger: ACTTGGCTGGGGAGTGGTCAAGTTTGCTGGCCTTCT...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CAA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGTTGGCCAGGCGCTGCTaGGCAATAATGCAGCGGATA +
Preference number: 5 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRLARRC*AIMQRI
Trigger: TATCCGCTGCATTATTGCCAAGCAGCGCCTGGCCAA...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CAA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGATCCCAGGACTTCTGTaGTCGGCTGGATTGGGAGGT +
Preference number: 5 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRIPGLL*SAGLGG
Trigger: ACCTCCCAATCCAGCCGACAACAGAAGTCCTGGGAT...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CAA 90 bp AGCCTGGCCAGTTTTCTAAGATTTACAATCAAGAGAAGAGAGTCATTCATTCCCGAGCAGGTTCCGATTTaGTTCTGTGACAGTGGTGTT +
Preference number: 5 (lower is better)
Translates to: SLASFLRFTIKRRESFIPEQVPI*FCDSGV
Trigger: AACACCACTGTCACAGAACAAAATCGGAACCTGCTC...GGGAATGAATGACTCTCTTCTCTTGATTGTAAATCTTAGAAAACTGGCCAGGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CAA 90 bp ACCCAGCCTTCTGTTTTAGAAAACATCTTGTCTTTGACAGCATGCCCACTGGAGAAATGGACAGTGTGGTaGTTGAGCTTTAATGAAAGC +
Preference number: 5 (lower is better)
Translates to: TQPSVLENILSLTACPLEKWTVW*LSFNES
Trigger: GCTTTCATTAAAGCTCAACAACCACACTGTCCATTT...CTCCAGTGGGCATGCTGTCAAAGACAAGATGTTTTCTAAAACAGAAGGCTGGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp GTTCACATATTCTGGAGCAAAAGGGACTTCTTCACATTCTATCAAATCTTGTTGGGCTTACCTGGCACCTaGTCTACGGATGCAAACACA +
Preference number: 5 (lower is better)
Translates to: VHIFWSKRDFFTFYQILLGLPGT*STDANT
Trigger: TGTGTTTGCATCCGTAGACAAGGTGCCAGGTAAGCC...CAACAAGATTTGATAGAATGTGAAGAAGTCCCTTTTGCTCCAGAATATGTGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CAA 90 bp GTTCACATATTCTGGAGCAAAAGGGACTTCTTCACATTCTATCAAATCTTGTTGATGAACCAGACCAAATaGGAGAAGTACGGGACAGCG +
Preference number: 5 (lower is better)
Translates to: VHIFWSKRDFFTFYQILLMNQTK*EKYGTA
Trigger: CGCTGTCCCGTACTTCTCCAATTTGGTCTGGTTCAT...CAACAAGATTTGATAGAATGTGAAGAAGTCCCTTTTGCTCCAGAATATGTGAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CAA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGATGAACCAGACCAAATaGGAGAAGTACGGGACAGCG +
Preference number: 5 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRMNQTK*EKYGTA
Trigger: CGCTGTCCCGTACTTCTCCAATTTGGTCTGGTTCAT...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CAA 90 bp GAAATCTCTCATCCTCAACTCTCAGCACTAATTAGTCAAGAAATGTCCAAGAAAACCATACCACCATCCTaGGTGATGACTGTGCATGCA +
Preference number: 5 (lower is better)
Translates to: EISHPQLSALISQEMSKKTIPPS*VMTVHA
Trigger: TGCATGCACAGTCATCACCAAGGATGGTGGTATGGT...TTTCTTGGACATTTCTTGACTAATTAGTGCTGAGAGTTGAGGATGAGAGATTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS-3UTR CAA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAACCATACCACCATCCTaGGTGATGACTGTGCATGCA +
Preference number: 5 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLTIPPS*VMTVHA
Trigger: TGCATGCACAGTCATCACCAAGGATGGTGGTATGGT...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CAA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAGAGCAGGTTCCGATTTaGTTCTGTGACAGTGGTGTT +
Preference number: 5 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLEQVPI*FCDSGV
Trigger: AACACCACTGTCACAGAACAAAATCGGAACCTGCTC...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CAA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTACACAGAGCTGTCATTTaGATCGCCCCAAATCAGGAT +
Preference number: 5 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLHRAVI*IAPNQD
Trigger: ATCCTGATTTGGGGCGATCAAAATGACAGCTCTGTG...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CAA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTATCTGTCTGCACACAGTaGTCAAGTTCGATCACATGG +
Preference number: 5 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLSVCTQ*SSSITW
Trigger: CCATGTGATCGAACTTGACAACTGTGTGCAGACAGA...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CAA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTATTGAGGAACTCGCAGTaGATGATCAGGATGTCGTTG +
Preference number: 5 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLLRNSQ*MIRMSL
Trigger: CAACGACATCCTGATCATCAACTGCGAGTTCCTCAA...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CAA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTATTTTGCATCCGCTTCTaGCCCTTGTGCTTGTTCATC +
Preference number: 5 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLFCIRF*PLCLFI
Trigger: GATGAACAAGCACAAGGGCAAGAAGCGGATGCAAAA...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CAA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGTTTTCTCAGCTTCACTaGGCACTGGGAGCTGAATTC +
Preference number: 5 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRFSQLH*ALGAEF
Trigger: GAATTCAGCTCCCAGTGCCAAGTGAAGCTGAGAAAA...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CAA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAAGACATCATCTGTTTaGATCAGGTCCTCCTCCCGA +
Preference number: 5 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLKTSSV*IRSSSR
Trigger: TCGGGAGGAGGACCTGATCAAAACAGATGATGTCTT...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CAA 90 bp TGTTCACATATTCTGGAGCAAAAGGGACTTCTTCACATTCTATCAAATCTTGTTCACAGAGCTGTCATTTaGATCGCCCCAAATCAGGAT +
Preference number: 5 (lower is better)
Translates to: CSHILEQKGLLHILSNLVHRAVI*IAPNQD
Trigger: ATCCTGATTTGGGGCGATCAAAATGACAGCTCTGTG...AACAAGATTTGATAGAATGTGAAGAAGTCCCTTTTGCTCCAGAATATGTGAACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS TCA 90 bp AGTCATTGGTGTGCTCATTGTAAAAGAAATGGACAGTGTGGTTGTTaGGCTTTAATGAAAGCGTTTTCAGGAACGATATGTAATACGCCA +
Preference number: 5 (lower is better)
Translates to: SHWCAHCKRNGQCGC*ALMKAFSGTICNTP
Trigger: TGGCGTATTACATATCGTTCCTGAAAACGCTTTCATTAAAGCTCAACAACCACACTGTCCATTTCTTTTACAATGAGCACACCAATGACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS-3UTR CAA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTATGGACAGTGTGGTTGTaGAGCTTTAATGAAAGCGTT +
Preference number: 5 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLWTVWL*SFNESV
Trigger: AACGCTTTCATTAAAGCTCAACAACCACACTGTCCA...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CAA 90 bp AATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAGGTTGTCTTCATGCTTTTaGAACCACCCTCTGTACCTT +
Preference number: 5 (lower is better)
Translates to: NLIAYSSLSMDKSSWLLRLSSCF*NHPLYL
Trigger: AAGGTACAGAGGGTGGTTCAAAAAGCATGAAGACAA...CCTTAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS-3UTR CAA 90 bp CAGAATCTGATAGCCTATAGCTCTTTATCCATGGACAAATCCTCTTGGTTATTAAAATGGACAGTGTGGTaGTTGAGCTTTAATGAAAGC +
Preference number: 5 (lower is better)
Translates to: QNLIAYSSLSMDKSSWLLKWTVW*LSFNES
Trigger: GCTTTCATTAAAGCTCAACAACCACACTGTCCATTT...TAATAACCAAGAGGATTTGTCCATGGATAAAGAGCTATAGGCTATCAGATTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS GCA 72 bp TCAGGTGGTCCAAGGAGTGGATGTTGCGGGAGGACTTaGTGTGGCCCCCGCCCACCCAGCTCCGTGAGCGTC +
Preference number: 6 (lower is better)
Translates to: SGGPRSGCCGRT*CGPRPPSSVSV
Trigger: GACGCTCACGGAGCTGGGTGGGCGGGGGCCACAGCAAGTCCTCCCGCAACATCCACTCCTTGGACCACCTGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000150894.2
ENSMUST00000155633.8
CDS GCA 72 bp TTCGTGGCGGCGCTCTTCTCCTCGTCTGTGGTGTTCTaGTCCTGCACTGAGGTCCCAGCAGCGGCCACCTCT +
Preference number: 6 (lower is better)
Translates to: FVAALFSSSVVF*SCTEVPAAATS
Trigger: AGAGGTGGCCGCTGCTGGGACCTCAGTGCAGGAGCAGAACACCACAGACGAGGAGAAGAGCGCCGCCACGAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS CAA 72 bp AGTGCCAGGTACTTCAGGTGGTCCAAGGAGTGGATGTaGCGGGAGGACTTGCTGTGGCCCCCGCCCACCCAG +
Preference number: 6 (lower is better)
Translates to: SARYFRWSKEWM*REDLLWPPPTQ
Trigger: CTGGGTGGGCGGGGGCCACAGCAAGTCCTCCCGCAACATCCACTCCTTGGACCACCTGAAGTACCTGGCACT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000150894.2
CDS CAA 90 bp ACAGTAGTCAGTGCCAGGTACTTCAGGTGGTCCAAGGAGTGGATGTaGCGGGAGGACTTGCTGTGGCCCCCGCCCACCCAGCTCCGTGAG +
Preference number: 6 (lower is better)
Translates to: TVVSARYFRWSKEWM*REDLLWPPPTQLRE
Trigger: CTCACGGAGCTGGGTGGGCGGGGGCCACAGCAAGTCCTCCCGCAACATCCACTCCTTGGACCACCTGAAGTACCTGGCACTGACTACTGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000150894.2
CDS CAA 72 bp TGGTACAGGTACTTCAGGTGGTCCAAGGAGTGGATGTaGCGGGAGGACTTGCTGTGGCCCCCGCCCACCCAG +
Preference number: 6 (lower is better)
Translates to: WYRYFRWSKEWM*REDLLWPPPTQ
Trigger: CTGGGTGGGCGGGGGCCACAGCAAGTCCTCCCGCAACATCCACTCCTTGGACCACCTGAAGTACCTGTACCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS TCA 72 bp GTTCCCCTCGCAGCTGCAGTGACAGGGAACGCAGCATaGAGAATACCCGGATGGCCCGCCTCGTCTTCTCCA +
Preference number: 6 (lower is better)
Translates to: VPLAAAVTGNAA*RIPGWPASSSP
Trigger: TGGAGAAGACGAGGCGGGCCATCCGGGTATTCTTCATGCTGCGTTCCCTGTCACTGCAGCTGCGAGGGGAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000155633.8
CDS TCA 72 bp TGGCAACTGGGTCTCAGGTTCCCCTCGCAGCTGCAGTaGCAGGGAACGCAGCATGAAGAATACCCGGATGGC +
Preference number: 6 (lower is better)
Translates to: WQLGLRFPSQLQ*QGTQHEEYPDG
Trigger: GCCATCCGGGTATTCTTCATGCTGCGTTCCCTGTCACTGCAGCTGCGAGGGGAACCTGAGACCCAGTTGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000155633.8
CDS GCA 72 bp CCACATCACCACATGGCAGCCGCTTCACAAAGTCAATaGCAGTCAGTGGAGTGCCCGTTGGGGGCAGGAGGA +
Preference number: 6 (lower is better)
Translates to: PHHHMAAASQSQ*QSVECPLGAGG
Trigger: TCCTCCTGCCCCCAACGGGCACTCCACTGACTGGCATTGACTTTGTGAAGCGGCTGCCATGTGGTGATGTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS GCA 72 bp GTCAGTGGCAACTGGGTCTCAGGTTCCCCTCGCAGCTaGAGTGACAGGGAACGCAGCATGAAGAATACCCGG +
Preference number: 6 (lower is better)
Translates to: VSGNWVSGSPRS*SDRERSMKNTR
Trigger: CCGGGTATTCTTCATGCTGCGTTCCCTGTCACTGCAGCTGCGAGGGGAACCTGAGACCCAGTTGCCACTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000155633.8
CDS CCA 72 bp CCGGATGGCCCGCCTCGTCTTCTCCACATCACCACATaGCAGCCGCTTCACAAAGTCAATGCCAGTCAGTGG +
Preference number: 6 (lower is better)
Translates to: PDGPPRLLHITT*QPLHKVNASQW
Trigger: CCACTGACTGGCATTGACTTTGTGAAGCGGCTGCCATGTGGTGATGTGGAGAAGACGAGGCGGGCCATCCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000155633.8
CDS CCA 72 bp GTTTTGATCAGGTCCTCCTCCCGAGTCAGTGGCAACTaGGTCTCAGGTTCCCCTCGCAGCTGCAGTGACAGG +
Preference number: 6 (lower is better)
Translates to: VLIRSSSRVSGN*VSGSPRSCSDR
Trigger: CCTGTCACTGCAGCTGCGAGGGGAACCTGAGACCCAGTTGCCACTGACTCGGGAGGAGGACCTGATCAAAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000155633.8
CDS CAA 72 bp ACCTGGCACCTTGTCTACGGATGCAAACACAGAGCGTaGCACTGTCGGGTCACTGCTGCCTCTGCGGCACTG +
Preference number: 6 (lower is better)
Translates to: TWHLVYGCKHRA*HCRVTAASAAL
Trigger: CAGTGCCGCAGAGGCAGCAGTGACCCGACAGTGCAACGCTCTGTGTTTGCATCCGTAGACAAGGTGCCAGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038145.13
ENSMUST00000115827.8
CDS CAA 90 bp GTTAAAACATGGTACAGGTACTTCAGGTGGTCCAAGGAGTGGATGTaGCGGGAGGACTTGCTGTGGCCCCCGCCCACCCAGCTCCGTGAG +
Preference number: 6 (lower is better)
Translates to: VKTWYRYFRWSKEWM*REDLLWPPPTQLRE
Trigger: CTCACGGAGCTGGGTGGGCGGGGGCCACAGCAAGTCCTCCCGCAACATCCACTCCTTGGACCACCTGAAGTACCTGTACCATGTTTTAAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS CAA 90 bp GGCCAGGTGCACATCCTTGATGACACAGCCAGAGCTGGTCAGTACTaGCTGCTTCAGGAGCAGGCAGCTCAGCTCCAGTGTAGCCAACCG +
Preference number: 6 (lower is better)
Translates to: GQVHILDDTARAGQY*LLQEQAAQLQCSQP
Trigger: CGGTTGGCTACACTGGAGCTGAGCTGCCTGCTCCTGAAGCAGCAAGTACTGACCAGCTCTGGCTGTGTCATCAAGGATGTGCACCTGGCC
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS GCA 72 bp TGTCCAGGGCATGGTACACCATATCCAGGAAGGGTCTaGTCCACTGTGCATTCTCTGAGTTCGTGGCGGCGC +
Preference number: 6 (lower is better)
Translates to: CPGHGTPYPGRV*STVHSLSSWRR
Trigger: GCGCCGCCACGAACTCAGAGAATGCACAGTGGAGCAGACCCTTCCTGGATATGGTGTACCATGCCCTGGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS CCA 72 bp GGAAGGGTCTGCTCCACTGTGCATTCTCTGAGTTCGTaGCGGCGCTCTTCTCCTCGTCTGTGGTGTTCTGCT +
Preference number: 6 (lower is better)
Translates to: GRVCSTVHSLSS*RRSSPRLWCSA
Trigger: AGCAGAACACCACAGACGAGGAGAAGAGCGCCGCCACGAACTCAGAGAATGCACAGTGGAGCAGACCCTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS CCA 72 bp ACATGGCAGCCGCTTCACAAAGTCAATGCCAGTCAGTaGAGTGCCCGTTGGGGGCAGGAGGATGGAAGCATC +
Preference number: 6 (lower is better)
Translates to: TWQPLHKVNASQ*SARWGQEDGSI
Trigger: GATGCTTCCATCCTCCTGCCCCCAACGGGCACTCCACTGACTGGCATTGACTTTGTGAAGCGGCTGCCATGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS CAA 90 bp TTCTGCTCCTGCACTGAGGTCCCAGCAGCGGCCACCTCTGAGAGCTaGCCAAGCTTCATGATCACCATCTCAATCTCTTCACGCTCCCCA +
Preference number: 6 (lower is better)
Translates to: FCSCTEVPAAATSES*PSFMITISISSRSP
Trigger: TGGGGAGCGTGAAGAGATTGAGATGGTGATCATGAAGCTTGGCAAGCTCTCAGAGGTGGCCGCTGCTGGGACCTCAGTGCAGGAGCAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038145.13
ENSMUST00000115827.8
ENSMUST00000115828.9
CDS CAA 90 bp GTGTGGCTTACCTGGCACCTTGTCTACGGATGCAAACACAGAGCGTaGCACTGTCGGGTCACTGCTGCCTCTGCGGCACTGCTCATAGAA +
Preference number: 6 (lower is better)
Translates to: VWLTWHLVYGCKHRA*HCRVTAASAALLIE
Trigger: TTCTATGAGCAGTGCCGCAGAGGCAGCAGTGACCCGACAGTGCAACGCTCTGTGTTTGCATCCGTAGACAAGGTGCCAGGTAAGCCACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS GCA 72 bp CAGGAGGTGTGGCTTACCTGGCACCTTGTCTACGGATaGAAACACAGAGCGTTGCACTGTCGGGTCACTGCT +
Preference number: 6 (lower is better)
Translates to: QEVWLTWHLVYG*KHRALHCRVTA
Trigger: AGCAGTGACCCGACAGTGCAACGCTCTGTGTTTGCATCCGTAGACAAGGTGCCAGGTAAGCCACACCTCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038145.13
CDS CCA 72 bp CCACCCTCTGTACCTTTAGTCTTCTCAGCGTCTTCCTaGGCATCTTCAGCAGACCCTCTCTCCTCGTCCTCC +
Preference number: 6 (lower is better)
Translates to: PPSVPLVFSASS*ASSADPLSSSS
Trigger: GGAGGACGAGGAGAGAGGGTCTGCTGAAGATGCCCAGGAAGACGCTGAGAAGACTAAAGGTACAGAGGGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038145.13
ENSMUST00000115827.8
ENSMUST00000115828.9
CDS CCA 72 bp ATCATCTGTTTTGATCAGGTCCTCCTCCCGAGTCAGTaGCAACTGGGTCTCAGGTTCCCCTCGCAGCTGCAG +
Preference number: 6 (lower is better)
Translates to: IICFDQVLLPSQ*QLGLRFPSQLQ
Trigger: CTGCAGCTGCGAGGGGAACCTGAGACCCAGTTGCCACTGACTCGGGAGGAGGACCTGATCAAAACAGATGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000155633.8
CDS TCA 72 bp AGCTCCAGTGTAGCCAACCGGATCCTGCCATCTGGCTaGGCAGCATTGTTCATGATCCTGATGAGCCTCTCG +
Preference number: 6 (lower is better)
Translates to: SSSVANRILPSG*AALFMILMSLS
Trigger: CGAGAGGCTCATCAGGATCATGAACAATGCTGCTCAGCCAGATGGCAGGATCCGGTTGGCTACACTGGAGCT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS GCA 72 bp TCAGCCACCAGGTCACTCAGTTTCCCCCGATTCCGGTaGTCCTCATCTGTCTGCACACAGTTGTCAAGTTCG +
Preference number: 6 (lower is better)
Translates to: SATRSLSFPRFR*SSSVCTQLSSS
Trigger: CGAACTTGACAACTGTGTGCAGACAGATGAGGAGCACCGGAATCGGGGGAAACTGAGTGACCTGGTGGCTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS CAA 72 bp CACATCCTTGATGACACAGCCAGAGCTGGTCAGTACTaGCTGCTTCAGGAGCAGGCAGCTCAGCTCCAGTGT +
Preference number: 6 (lower is better)
Translates to: HILDDTARAGQY*LLQEQAAQLQC
Trigger: ACACTGGAGCTGAGCTGCCTGCTCCTGAAGCAGCAAGTACTGACCAGCTCTGGCTGTGTCATCAAGGATGTG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS CAA 72 bp TCTCTTGCACCCTCCAAACAGGCCAGGTGCACATCCTaGATGACACAGCCAGAGCTGGTCAGTACTTGCTGC +
Preference number: 6 (lower is better)
Translates to: SLAPSKQARCTS*MTQPELVSTCC
Trigger: GCAGCAAGTACTGACCAGCTCTGGCTGTGTCATCAAGGATGTGCACCTGGCCTGTTTGGAGGGTGCAAGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS CAA 90 bp ACACTCTCTTCTCTTGCACCCTCCAAACAGGCCAGGTGCACATCCTaGATGACACAGCCAGAGCTGGTCAGTACTTGCTGCTTCAGGAGC +
Preference number: 6 (lower is better)
Translates to: TLSSLAPSKQARCTS*MTQPELVSTCCFRS
Trigger: GCTCCTGAAGCAGCAAGTACTGACCAGCTCTGGCTGTGTCATCAAGGATGTGCACCTGGCCTGTTTGGAGGGTGCAAGAGAAGAGAGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS CAA 90 bp TACGTGAAAACCTGGCACCTTGTCTACGGATGCAAACACAGAGCGTaGCACTGTCGGGTCACTGCTGCCTCTGCGGCACTGCTCATAGAA +
Preference number: 6 (lower is better)
Translates to: YVKTWHLVYGCKHRA*HCRVTAASAALLIE
Trigger: TTCTATGAGCAGTGCCGCAGAGGCAGCAGTGACCCGACAGTGCAACGCTCTGTGTTTGCATCCGTAGACAAGGTGCCAGGTTTTCACGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115827.8
CDS GCA 72 bp CTCAGTTTCCCCCGATTCCGGTGCTCCTCATCTGTCTaGACACAGTTGTCAAGTTCGATCACATGGCTCCCA +
Preference number: 6 (lower is better)
Translates to: LSFPRFRCSSSV*TQLSSSITWLP
Trigger: TGGGAGCCATGTGATCGAACTTGACAACTGTGTGCAGACAGATGAGGAGCACCGGAATCGGGGGAAACTGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS GCA 72 bp ACATCCTTGATGACACAGCCAGAGCTGGTCAGTACTTaGTGCTTCAGGAGCAGGCAGCTCAGCTCCAGTGTA +
Preference number: 6 (lower is better)
Translates to: TSLMTQPELVST*CFRSRQLSSSV
Trigger: TACACTGGAGCTGAGCTGCCTGCTCCTGAAGCAGCAAGTACTGACCAGCTCTGGCTGTGTCATCAAGGATGT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS CCA 72 bp CACTGTTATCCGCCTCGTCTTCTCCACATCACCACATaGCAGCCGCTTCACAAAGTCAATGCCAGTCAGTGG +
Preference number: 6 (lower is better)
Translates to: HCYPPRLLHITT*QPLHKVNASQW
Trigger: CCACTGACTGGCATTGACTTTGTGAAGCGGCTGCCATGTGGTGATGTGGAGAAGACGAGGCGGATAACAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115828.9
CDS CCA 72 bp TGCCAAGAAACAGTAGTCAGTGCCAGGTACTTCAGGTaGTCCAAGGAGTGGATGTTGCGGGAGGACTTGCTG +
Preference number: 6 (lower is better)
Translates to: CQETVVSARYFR*SKEWMLREDLL
Trigger: CAGCAAGTCCTCCCGCAACATCCACTCCTTGGACCACCTGAAGTACCTGGCACTGACTACTGTTTCTTGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150894.2
CDS CAA 72 bp CCCCGATTCCGGTGCTCCTCATCTGTCTGCACACAGTaGTCAAGTTCGATCACATGGCTCCCAATGAACCAG +
Preference number: 6 (lower is better)
Translates to: PRFRCSSSVCTQ*SSSITWLPMNQ
Trigger: CTGGTTCATTGGGAGCCATGTGATCGAACTTGACAACTGTGTGCAGACAGATGAGGAGCACCGGAATCGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS CAA 72 bp TGCACTGAGGTCCCAGCAGCGGCCACCTCTGAGAGCTaGCCAAGCTTCATGATCACCATCTCAATCTCTTCA +
Preference number: 6 (lower is better)
Translates to: CTEVPAAATSES*PSFMITISISS
Trigger: TGAAGAGATTGAGATGGTGATCATGAAGCTTGGCAAGCTCTCAGAGGTGGCCGCTGCTGGGACCTCAGTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038145.13
ENSMUST00000115827.8
ENSMUST00000115828.9
CDS CCA 72 bp CTTCACAAAGTCAATGCCAGTCAGTGGAGTGCCCGTTaGGGGCAGGAGGATGGAAGCATCCATCATGAGATA +
Preference number: 6 (lower is better)
Translates to: LHKVNASQWSAR*GQEDGSIHHEI
Trigger: TATCTCATGATGGATGCTTCCATCCTCCTGCCCCCAACGGGCACTCCACTGACTGGCATTGACTTTGTGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS CCA 72 bp ACCATCTCAATCTCTTTAGTCTTCTCAGCGTCTTCCTaGGCATCTTCAGCAGACCCTCTCTCCTCGTCCTCC +
Preference number: 6 (lower is better)
Translates to: TISISLVFSASS*ASSADPLSSSS
Trigger: GGAGGACGAGGAGAGAGGGTCTGCTGAAGATGCCCAGGAAGACGCTGAGAAGACTAAAGAGATTGAGATGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS CAA 72 bp TGCACTGAGGTCCCAGCAGCGGCCACCTCTGAGAGCTaGCCAAGCTTCATGATCACCATCTCAATCTCTTTA +
Preference number: 6 (lower is better)
Translates to: CTEVPAAATSES*PSFMITISISL
Trigger: TAAAGAGATTGAGATGGTGATCATGAAGCTTGGCAAGCTCTCAGAGGTGGCCGCTGCTGGGACCTCAGTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS CAA 90 bp TTCTGCTCCTGCACTGAGGTCCCAGCAGCGGCCACCTCTGAGAGCTaGCCAAGCTTCATGATCACCATCTCAATCTCTTTAGTCTTCTCA +
Preference number: 6 (lower is better)
Translates to: FCSCTEVPAAATSES*PSFMITISISLVFS
Trigger: TGAGAAGACTAAAGAGATTGAGATGGTGATCATGAAGCTTGGCAAGCTCTCAGAGGTGGCCGCTGCTGGGACCTCAGTGCAGGAGCAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000155633.8
CDS CAA 90 bp CTCAGTTTCCCCCGATTCCGGTGCTCCTCATCTGTCTGCACACAGTaGTCAAGTTCGATCACATGGCTCCCAATGAACCAGACCAAATTG +
Preference number: 6 (lower is better)
Translates to: LSFPRFRCSSSVCTQ*SSSITWLPMNQTKL
Trigger: CAATTTGGTCTGGTTCATTGGGAGCCATGTGATCGAACTTGACAACTGTGTGCAGACAGATGAGGAGCACCGGAATCGGGGGAAACTGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS TCA 72 bp AGCTGTCATTTTGATCGCCCCAAATCAGGATCTCAGTaGTGGAACGGATGGTCTCCACGAGCAGGTTCCGAT +
Preference number: 6 (lower is better)
Translates to: SCHFDRPKSGSQ*WNGWSPRAGSD
Trigger: ATCGGAACCTGCTCGTGGAGACCATCCGTTCCATCACTGAGATCCTGATTTGGGGCGATCAAAATGACAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS TCA 72 bp GCACACAGTTGTCAAGTTCGATCACATGGCTCCCAATaGACCAGACCAAATTGGAGAAGTACGGGACAGCGG +
Preference number: 6 (lower is better)
Translates to: AHSCQVRSHGSQ*TRPNWRSTGQR
Trigger: CCGCTGTCCCGTACTTCTCCAATTTGGTCTGGTTCATTGGGAGCCATGTGATCGAACTTGACAACTGTGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS TCA 72 bp TGCCCGTTGGGGGCAGGAGGATGGAAGCATCCATCATaGGATACTCCACATTCATGGGCTTTATTGTCATGC +
Preference number: 6 (lower is better)
Translates to: CPLGAGGWKHPS*DTPHSWALLSC
Trigger: GCATGACAATAAAGCCCATGAATGTGGAGTATCTCATGATGGATGCTTCCATCCTCCTGCCCCCAACGGGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS CAA 72 bp TCCACAGCCAGGAACCGCTGGACCATACCACCATCCTaGGTGATGACTGTGCATGCAATCAAGTCACTGTTA +
Preference number: 6 (lower is better)
Translates to: STARNRWTIPPS*VMTVHAIKSLL
Trigger: TAACAGTGACTTGATTGCATGCACAGTCATCACCAAGGATGGTGGTATGGTCCAGCGGTTCCTGGCTGTGGA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000155633.8
CDS CAA 72 bp AAAAGCCTGTTGAGCAGGTGGTCGGTGAGTACGTCATaGAGGAACTCGCAGTTGATGATCAGGATGTCGTTG +
Preference number: 6 (lower is better)
Translates to: KSLLSRWSVSTS*RNSQLMIRMSL
Trigger: CAACGACATCCTGATCATCAACTGCGAGTTCCTCAATGACGTACTCACCGACCACCTGCTCAACAGGCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS TCA 72 bp CCAAATTGGAGAAGTACGGGACAGCGGTTTTGTCTCTaGTGTAGTGCAGCATGGCCTGGTTATCCACTTTGT +
Preference number: 6 (lower is better)
Translates to: PNWRSTGQRFCL*CSAAWPGYPLC
Trigger: ACAAAGTGGATAACCAGGCCATGCTGCACTACATCAGAGACAAAACCGCTGTCCCGTACTTCTCCAATTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000038145.13
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS TCA 72 bp CCAAATTGGAGAAGTACGGGACAGCGGTTTTGTCTCTaGTGTAGTGCAGCATGGCCTGGTTATCCAATGACA +
Preference number: 6 (lower is better)
Translates to: PNWRSTGQRFCL*CSAAWPGYPMT
Trigger: TGTCATTGGATAACCAGGCCATGCTGCACTACATCAGAGACAAAACCGCTGTCCCGTACTTCTCCAATTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066345.15
CDS TCA 72 bp CCAAATTGGAGAAGTACGGGACAGCGGTTTTGTCTCTaGTGTAGTGCAGCATGGCCTGGTTATCCATTGGAA +
Preference number: 6 (lower is better)
Translates to: PNWRSTGQRFCL*CSAAWPGYPLE
Trigger: TTCCAATGGATAACCAGGCCATGCTGCACTACATCAGAGACAAAACCGCTGTCCCGTACTTCTCCAATTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115824.10
CDS CAA 72 bp AGTTCGATCACATGGCTCCCAATGAACCAGACCAAATaGGAGAAGTACGGGACAGCGGTTTTGTCTCTGATG +
Preference number: 6 (lower is better)
Translates to: SSITWLPMNQTK*EKYGTAVLSLM
Trigger: CATCAGAGACAAAACCGCTGTCCCGTACTTCTCCAATTTGGTCTGGTTCATTGGGAGCCATGTGATCGAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS CAA 90 bp CATGCAATCAAGTCACTGTTATTCAGATCCAAGACATCATCTGTTTaGATCAGGTCCTCCTCCCGAGTCAGTGGCAACTGGGTCTCAGGT +
Preference number: 6 (lower is better)
Translates to: HAIKSLLFRSKTSSV*IRSSSRVSGNWVSG
Trigger: ACCTGAGACCCAGTTGCCACTGACTCGGGAGGAGGACCTGATCAAAACAGATGATGTCTTGGATCTGAATAACAGTGACTTGATTGCATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000155633.8
CDS TCA 72 bp TTCTCCAGGAAGAAGTCAAACACAGAGCTGTCATTTTaGTCGCCCCAAATCAGGATCTCAGTGATGGAACGG +
Preference number: 6 (lower is better)
Translates to: FSRKKSNTELSF*SPQIRISVMER
Trigger: CCGTTCCATCACTGAGATCCTGATTTGGGGCGATCAAAATGACAGCTCTGTGTTTGACTTCTTCCTGGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS TCA 72 bp ATGGTTCTCACGGCAATTCGAACCATGCTTTCGGGATaGTTGAAGAACTTGATGGCTTCTGTGTACAGGGCA +
Preference number: 6 (lower is better)
Translates to: MVLTAIRTMLSG*LKNLMASVYRA
Trigger: TGCCCTGTACACAGAAGCCATCAAGTTCTTCAATCATCCCGAAAGCATGGTTCGAATTGCCGTGAGAACCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS TCA 72 bp GCATGGCCTGGTTATCCACTTTGTAGACATTCAAAGTaGTGGTTCTCACGGCAATTCGAACCATGCTTTCGG +
Preference number: 6 (lower is better)
Translates to: AWPGYPLCRHSK*WFSRQFEPCFR
Trigger: CCGAAAGCATGGTTCGAATTGCCGTGAGAACCATCACTTTGAATGTCTACAAAGTGGATAACCAGGCCATGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000038145.13
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS CCA 72 bp TTAGTTTTTCAGGATCCATGCCTTTGTTATGAGACATaGCATACAGGAGGCAGAGCACGAAGAGGGCGTGAT +
Preference number: 6 (lower is better)
Translates to: LVFQDPCLCYET*HTGGRARRGRD
Trigger: ATCACGCCCTCTTCGTGCTCTGCCTCCTGTATGCCATGTCTCATAACAAAGGCATGGATCCTGAAAAACTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS CAA 72 bp CTTCTCCAGGAAGAAGTCAAACACAGAGCTGTCATTTaGATCGCCCCAAATCAGGATCTCAGTGATGGAACG +
Preference number: 6 (lower is better)
Translates to: LLQEEVKHRAVI*IAPNQDLSDGT
Trigger: CGTTCCATCACTGAGATCCTGATTTGGGGCGATCAAAATGACAGCTCTGTGTTTGACTTCTTCCTGGAGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS CAA 72 bp AAGTCACTGTTATTCAGATCCAAGACATCATCTGTTTaGATCAGGTCCTCCTCCCGAGTCAGTGGCAACTGG +
Preference number: 6 (lower is better)
Translates to: KSLLFRSKTSSV*IRSSSRVSGNW
Trigger: CCAGTTGCCACTGACTCGGGAGGAGGACCTGATCAAAACAGATGATGTCTTGGATCTGAATAACAGTGACTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115823.2
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000155633.8
CDS CCA 72 bp TCATCTGTCTGCACACAGTTGTCAAGTTCGATCACATaGCTCCCAATGAACCAGACCAAATTGGAGAAGTAC +
Preference number: 6 (lower is better)
Translates to: SSVCTQLSSSIT*LPMNQTKLEKY
Trigger: GTACTTCTCCAATTTGGTCTGGTTCATTGGGAGCCATGTGATCGAACTTGACAACTGTGTGCAGACAGATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS TCA 72 bp CCTGGTTATCCAATGACACTTTGTAGACATTCAAAGTaGTGGTTCTCACGGCAATTCGAACCATGCTTTCGG +
Preference number: 6 (lower is better)
Translates to: PGYPMTLCRHSK*WFSRQFEPCFR
Trigger: CCGAAAGCATGGTTCGAATTGCCGTGAGAACCATCACTTTGAATGTCTACAAAGTGTCATTGGATAACCAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066345.15
CDS TCA 72 bp CCTGGTTATCCATTGGAACTTTGTAGACATTCAAAGTaGTGGTTCTCACGGCAATTCGAACCATGCTTTCGG +
Preference number: 6 (lower is better)
Translates to: PGYPLELCRHSK*WFSRQFEPCFR
Trigger: CCGAAAGCATGGTTCGAATTGCCGTGAGAACCATCACTTTGAATGTCTACAAAGTTCCAATGGATAACCAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115824.10
CDS TCA 72 bp ATGAAAGCGTTTTCAGGAACGATATGTAATACGCCATaGTCTCCTCGTCGGAAAAGTCAAATTTATGGACAA +
Preference number: 6 (lower is better)
Translates to: MKAFSGTICNTP*SPRRKSQIYGQ
Trigger: TTGTCCATAAATTTGACTTTTCCGACGAGGAGATCATGGCGTATTACATATCGTTCCTGAAAACGCTTTCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8
CDS TCA 72 bp TGTGCTCATTGTAAAAGAAATGGACAGTGTGGTTGTTaGGCTTTAATGAAAGCGTTTTCAGGAACGATATGT +
Preference number: 6 (lower is better)
Translates to: CAHCKRNGQCGC*ALMKAFSGTIC
Trigger: ACATATCGTTCCTGAAAACGCTTTCATTAAAGCTCAACAACCACACTGTCCATTTCTTTTACAATGAGCACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000038145.13
ENSMUST00000066345.15
ENSMUST00000115824.10
ENSMUST00000115827.8
ENSMUST00000115828.9
ENSMUST00000155633.8