Pregenerated sensors for CLEC12B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030158Ensembl transcript IDs: ENSMUST00000032261.9, ENSMUST00000112082.9
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAATTTTTAGTTGACTCAAATATTGTAGCTTTCTTCTTTCTTGCATaGGTTTGCAATAGGTCTTTACTTCTGGATAGATCTGGAAGAGTC | + |
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Preference number: 1 (lower is better) Translates to: QFLVDSNIVAFFFLA*VCNRSLLLDRSGRV Trigger: GACTCTTCCAGATCTATCCAGAAGTAAAGACCTATTGCAAACCCATGCAAGAAAGAAGAAAGCTACAATATTTGAGTCAACTAAAAATTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| 3UTR-3UTR CCA 90 bp | AGGTTTTATAGCAGGGGTCTCCTAGAACTTGCTCCCAAACTGTGGCCTGTGTTGAGACACGTACTTTCCTaGGCACTTGACATCATTTTA | + |
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Preference number: 2 (lower is better) Translates to: RFYSRGLLELAPKLWPVLRHVLS*ALDIIL Trigger: TAAAATGATGTCAAGTGCCCAGGAAAGTACGTGTCT...CAACACAGGCCACAGTTTGGGAGCAAGTTCTAGGAGACCCCTGCTATAAAACCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| 3UTR-3UTR CCA 90 bp | AAATATTTTCAATTCAACAACACAGCACTGTTGTTTTACCTTGGGCTCCCTCAGCTTGCTCCCAAACTGTaGCCTGTGTTGGTCTCGTGG | + |
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Preference number: 2 (lower is better) Translates to: KYFQFNNTALLFYLGLPQLAPKL*PVLVSW Trigger: CCACGAGACCAACACAGGCCACAGTTTGGGAGCAAG...CTGAGGGAGCCCAAGGTAAAACAACAGTGCTGTGTTGTTGAATTGAAAATATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032261.9 |
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| 3UTR-3UTR CCA 90 bp | TTTCAATTCAACAACACAGCACTGTTGTTTTACCTTGGGCTCCCTCAGACCTGTAGACACGTACTTTCCTaGGCACTTGACATCATTTTA | + |
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Preference number: 2 (lower is better) Translates to: FQFNNTALLFYLGLPQTCRHVLS*ALDIIL Trigger: TAAAATGATGTCAAGTGCCCAGGAAAGTACGTGTCT...ACAGGTCTGAGGGAGCCCAAGGTAAAACAACAGTGCTGTGTTGTTGAATTGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032261.9 |
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| 3UTR-3UTR CCA 90 bp | ATTTTCAATTCAACAACACAGCACTGTTGTTTTACCTTGGGCTCCCTCAGACCTAACTGTGGCCTGTGTTaGTCTCGTGGTAAATATTTA | + |
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Preference number: 2 (lower is better) Translates to: IFNSTTQHCCFTLGSLRPNCGLC*SRGKYL Trigger: TAAATATTTACCACGAGACCAACACAGGCCACAGTT...AGGTCTGAGGGAGCCCAAGGTAAAACAACAGTGCTGTGTTGTTGAATTGAAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032261.9 |
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| 3UTR CCA 72 bp | TTTTCAATTCAACAACACAGCACTGTTGTTTTACCTTaGGCTCCCTCAGACCTGTACATGATTGAGCAGGTT | + |
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Preference number: 3 (lower is better) Translates to: FSIQQHSTVVLP*APSDLYMIEQV Trigger: AACCTGCTCAATCATGTACAGGTCTGAGGGAGCCCAAGGTAAAACAACAGTGCTGTGTTGTTGAATTGAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032261.9 |
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| CDS-3UTR GCA 90 bp | TATAGCAGGGGTCTCCTAGAACTTGCTCCCAAACTGTGGCCTGTGTTGGTCTCGGTAGCCATCTGCTCCTaGCTCTCCAGTAGGGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: YSRGLLELAPKLWPVLVSVAICS*LSSRAE Trigger: CTCTGCCCTACTGGAGAGGCAGGAGCAGATGGCTAC...CGAGACCAACACAGGCCACAGTTTGGGAGCAAGTTCTAGGAGACCCCTGCTATA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR CCA 90 bp | CAGGGGTCTCCTAGAACTTGCTCCCAAACTGTGGCCTGTGTTGGTCTCGTGGTAAGTAGGGCAGAGATCTaGGACTGGAGAGACTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: QGSPRTCSQTVACVGLVVSRAEI*DWRDSS Trigger: GGAGGAGTCTCTCCAGTCCCAGATCTCTGCCCTACT...TACCACGAGACCAACACAGGCCACAGTTTGGGAGCAAGTTCTAGGAGACCCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR TCA 90 bp | CAGGGGTCTCCTAGAACTTGCTCCCAAACTGTGGCCTGTGTTGGTCTCGTGGTAAGGGACAGCTGTGACTaGAGGAGATCCCTTTCTTCG | + |
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Preference number: 4 (lower is better) Translates to: QGSPRTCSQTVACVGLVVRDSCD*RRSLSS Trigger: CGAAGAAAGGGATCTCCTTCAGTCACAGCTGTCCCT...TACCACGAGACCAACACAGGCCACAGTTTGGGAGCAAGTTCTAGGAGACCCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR GCA 90 bp | CAGGGGTCTCCTAGAACTTGCTCCCAAACTGTGGCCTGTGTTGGTCTCGTGGTAATTCCCCCTCACTCTTaGAGAGTCCTGAAGCATCAG | + |
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Preference number: 4 (lower is better) Translates to: QGSPRTCSQTVACVGLVVIPPHS*RVLKHQ Trigger: CTGATGCTTCAGGACTCTGCAAGAGTGAGGGGGAAT...TACCACGAGACCAACACAGGCCACAGTTTGGGAGCAAGTTCTAGGAGACCCCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR GCA 90 bp | AACAGGTCAGAGGGAATCAGACGTGAAGAGGAGAACGTTCTGAGAAGCAGGTTTGTAGCCATCTGCTCCTaGCTCTCCAGTAGGGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: NRSEGIRREEENVLRSRFVAICS*LSSRAE Trigger: CTCTGCCCTACTGGAGAGGCAGGAGCAGATGGCTAC...AAACCTGCTTCTCAGAACGTTCTCCTCTTCACGTCTGATTCCCTCTGACCTGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR CCA 90 bp | CAGGGGTCTCCTAGAACTTGCTCCCAAACTGTGGCCTGTGTTGGTCTCGTGGTAACCATTGCCATGTCTTaGGACAAGGGTTGCATTTAT | + |
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Preference number: 4 (lower is better) Translates to: QGSPRTCSQTVACVGLVVTIAMS*DKGCIY Trigger: ATAAATGCAACCCTTGTCCCAAGACATGGCAATGGT...TACCACGAGACCAACACAGGCCACAGTTTGGGAGCAAGTTCTAGGAGACCCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR GCA 90 bp | AGTAATCAGAACAGGTCAGAGGGAATCAGACGTGAAGAGGAGAACGTTCTGAGAAGTTTGGTAGCCATCTaGTCCTGCCTCTCCAGTAGG | + |
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Preference number: 4 (lower is better) Translates to: SNQNRSEGIRREEENVLRSLVAI*SCLSSR Trigger: CCTACTGGAGAGGCAGGAGCAGATGGCTACCAAACT...TCTCAGAACGTTCTCCTCTTCACGTCTGATTCCCTCTGACCTGTTCTGATTACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR GCA 90 bp | CAGGGGTCTCCTAGAACTTGCTCCCAAACTGTGGCCTGTGTTGGTCTCGTGGTACTATACAGTCCTTTCTaGTATCACTCCAGGATTTCT | + |
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Preference number: 4 (lower is better) Translates to: QGSPRTCSQTVACVGLVVLYSPF*YHSRIS Trigger: AGAAATCCTGGAGTGATAGCAGAAAGGACTGTATAG...TACCACGAGACCAACACAGGCCACAGTTTGGGAGCAAGTTCTAGGAGACCCCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR CCA 90 bp | AGGTTTTATAGCAGGGGTCTCCTAGAACTTGCTCCCAAACTGTGGCCTGTGTTGCAAGGGTTGCATTTATaGTCAGAAGCGTGGATGAGG | + |
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Preference number: 4 (lower is better) Translates to: RFYSRGLLELAPKLWPVLQGLHL*SEAWMR Trigger: CCTCATCCACGCTTCTGACCATAAATGCAACCCTTG...CAACACAGGCCACAGTTTGGGAGCAAGTTCTAGGAGACCCCTGCTATAAAACCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR TCA 90 bp | CAGGGGTCTCCTAGAACTTGCTCCCAAACTGTGGCCTGTGTTGGTCTCGTGGTACTGACTCAACTTCTCTaGATCAGAGTTAATGTCATT | + |
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Preference number: 4 (lower is better) Translates to: QGSPRTCSQTVACVGLVVLTQLL*IRVNVI Trigger: AATGACATTAACTCTGATTCAGAGAAGTTGAGTCAG...TACCACGAGACCAACACAGGCCACAGTTTGGGAGCAAGTTCTAGGAGACCCCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR CCA 90 bp | AACAGGTCAGAGGGAATCAGACGTGAAGAGGAGAACGTTCTGAGAAGCAGGTTTCAAGGGTTGCATTTATaGTCAGAAGCGTGGATGAGG | + |
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Preference number: 4 (lower is better) Translates to: NRSEGIRREEENVLRSRFQGLHL*SEAWMR Trigger: CCTCATCCACGCTTCTGACCATAAATGCAACCCTTG...AAACCTGCTTCTCAGAACGTTCTCCTCTTCACGTCTGATTCCCTCTGACCTGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR TCA 90 bp | CAAGAAACAATGTTTATTGACAGACAGACTGAGAAGACACGTACTTTCCTGGGCTGTGAGGGACAGCTGTaGCTGAAGGAGATCCCTTTC | + |
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Preference number: 4 (lower is better) Translates to: QETMFIDRQTEKTRTFLGCEGQL*LKEIPF Trigger: GAAAGGGATCTCCTTCAGTCACAGCTGTCCCTCACA...GCCCAGGAAAGTACGTGTCTTCTCAGTCTGTCTGTCAATAAACATTGTTTCTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR GCA 90 bp | AACAGGTCAGAGGGAATCAGACGTGAAGAGGAGAACGTTCTGAGAAGCAGGTTTCTGCAAAAACATAGTTaGCAAGGTCACCAGTCCTGT | + |
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Preference number: 4 (lower is better) Translates to: NRSEGIRREEENVLRSRFLQKHS*QGHQSC Trigger: ACAGGACTGGTGACCTTGGCAACTATGTTTTTGCAG...AAACCTGCTTCTCAGAACGTTCTCCTCTTCACGTCTGATTCCCTCTGACCTGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR GCA 90 bp | GGCCTGTGTTGGTCTCGTGGTAAATATTTAAATATCACCCAGTATCCATGTAGAAGTTTGGTAGCCATCTaGTCCTGCCTCTCCAGTAGG | + |
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Preference number: 4 (lower is better) Translates to: GLCWSRGKYLNITQYPCRSLVAI*SCLSSR Trigger: CCTACTGGAGAGGCAGGAGCAGATGGCTACCAAACT...TCTACATGGATACTGGGTGATATTTAAATATTTACCACGAGACCAACACAGGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR GCA 90 bp | TTTCAATTCAACAACACAGCACTGTTGTTTTACCTTGGGCTCCCTCAGACCTGTGATCCCTTTCTTCGGTaGTGTCAATCTTCACCAGAG | + |
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Preference number: 4 (lower is better) Translates to: FQFNNTALLFYLGLPQTCDPFLR*CQSSPE Trigger: CTCTGGTGAAGATTGACAGCACCGAAGAAAGGGATC...ACAGGTCTGAGGGAGCCCAAGGTAAAACAACAGTGCTGTGTTGTTGAATTGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032261.9 |
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| CDS-3UTR CCA 90 bp | AACGTTCTGAGAAGCAGGTTTGTCCGTGCAATAGTTTTAAGTACACAGTCAATTGCAGAGATCTGGGACTaGAGAGACTCCTCCGTCAGA | + |
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Preference number: 4 (lower is better) Translates to: NVLRSRFVRAIVLSTQSIAEIWD*RDSSVR Trigger: TCTGACGGAGGAGTCTCTCCAGTCCCAGATCTCTGC...AATTGACTGTGTACTTAAAACTATTGCACGGACAAACCTGCTTCTCAGAACGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR GCA 90 bp | GGCCTGTGTTGGTCTCGTGGTAAATATTTAAATATCACCCAGTATCCATGTAGAATTCCCCCTCACTCTTaGAGAGTCCTGAAGCATCAG | + |
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Preference number: 4 (lower is better) Translates to: GLCWSRGKYLNITQYPCRIPPHS*RVLKHQ Trigger: CTGATGCTTCAGGACTCTGCAAGAGTGAGGGGGAAT...TCTACATGGATACTGGGTGATATTTAAATATTTACCACGAGACCAACACAGGCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR CCA 90 bp | TTTCAATTCAACAACACAGCACTGTTGTTTTACCTTGGGCTCCCTCAGACCTGTCAGATTGTCCTGCTGTaGATGGATGCTTTTCTGAAG | + |
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Preference number: 4 (lower is better) Translates to: FQFNNTALLFYLGLPQTCQIVLL*MDAFLK Trigger: CTTCAGAAAAGCATCCATCCACAGCAGGACAATCTG...ACAGGTCTGAGGGAGCCCAAGGTAAAACAACAGTGCTGTGTTGTTGAATTGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032261.9 |
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| CDS-3UTR CCA 90 bp | AGTAATCAGAACAGGTCAGAGGGAATCAGACGTGAAGAGGAGAACGTTCTGAGAACCATTGCCATGTCTTaGGACAAGGGTTGCATTTAT | + |
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Preference number: 4 (lower is better) Translates to: SNQNRSEGIRREEENVLRTIAMS*DKGCIY Trigger: ATAAATGCAACCCTTGTCCCAAGACATGGCAATGGT...TCTCAGAACGTTCTCCTCTTCACGTCTGATTCCCTCTGACCTGTTCTGATTACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR TCA 90 bp | CTGTGTTGGTCTCGTGGTAAATATTTAAATATCACCCAGTATCCATGTAGACATAGGGACAGCTGTGACTaGAGGAGATCCCTTTCTTCG | + |
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Preference number: 4 (lower is better) Translates to: LCWSRGKYLNITQYPCRHRDSCD*RRSLSS Trigger: CGAAGAAAGGGATCTCCTTCAGTCACAGCTGTCCCT...ATGTCTACATGGATACTGGGTGATATTTAAATATTTACCACGAGACCAACACAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR GCA 90 bp | TGTGGCCTGTGTTGGTCTCGTGGTAAATATTTAAATATCACCCAGTATCCATGTCCTGCTGTGGATGGATaGTTTTCTGAAGCTGACTCA | + |
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Preference number: 4 (lower is better) Translates to: CGLCWSRGKYLNITQYPCPAVDG*FSEADS Trigger: TGAGTCAGCTTCAGAAAAGCATCCATCCACAGCAGG...ACATGGATACTGGGTGATATTTAAATATTTACCACGAGACCAACACAGGCCACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR CCA 90 bp | AGAATAAAGCAAGAAACAATGTTTATTGACAGACAGACTGAGAAGACACGTACTGCAGAGATCTGGGACTaGAGAGACTCCTCCGTCAGA | + |
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Preference number: 4 (lower is better) Translates to: RIKQETMFIDRQTEKTRTAEIWD*RDSSVR Trigger: TCTGACGGAGGAGTCTCTCCAGTCCCAGATCTCTGC...AGTACGTGTCTTCTCAGTCTGTCTGTCAATAAACATTGTTTCTTGCTTTATTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR GCA 90 bp | GGCCTGTGTTGGTCTCGTGGTAAATATTTAAATATCACCCAGTATCCATGTAGACTGCAAAAACATAGTTaGCAAGGTCACCAGTCCTGT | + |
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Preference number: 4 (lower is better) Translates to: GLCWSRGKYLNITQYPCRLQKHS*QGHQSC Trigger: ACAGGACTGGTGACCTTGGCAACTATGTTTTTGCAG...TCTACATGGATACTGGGTGATATTTAAATATTTACCACGAGACCAACACAGGCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR GCA 90 bp | ATCAGACGTGAAGAGGAGAACGTTCTGAGAAGCAGGTTTGTCCGTGCAATAGTTATGTCATTAGACACCTaGAAAAACATAGTTGCCAAG | + |
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Preference number: 4 (lower is better) Translates to: IRREEENVLRSRFVRAIVMSLDT*KNIVAK Trigger: CTTGGCAACTATGTTTTTGCAGGTGTCTAATGACAT...AACTATTGCACGGACAAACCTGCTTCTCAGAACGTTCTCCTCTTCACGTCTGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR GCA 90 bp | AACGTTCTGAGAAGCAGGTTTGTCCGTGCAATAGTTTTAAGTACACAGTCAATTGATCCCTTTCTTCGGTaGTGTCAATCTTCACCAGAG | + |
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Preference number: 4 (lower is better) Translates to: NVLRSRFVRAIVLSTQSIDPFLR*CQSSPE Trigger: CTCTGGTGAAGATTGACAGCACCGAAGAAAGGGATC...AATTGACTGTGTACTTAAAACTATTGCACGGACAAACCTGCTTCTCAGAACGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR GCA 90 bp | TGTTGGTCTCGTGGTAAATATTTAAATATCACCCAGTATCCATGTAGACATGTACCTGCTGTGGATGGATaGTTTTCTGAAGCTGACTCA | + |
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Preference number: 4 (lower is better) Translates to: CWSRGKYLNITQYPCRHVPAVDG*FSEADS Trigger: TGAGTCAGCTTCAGAAAAGCATCCATCCACAGCAGG...TACATGTCTACATGGATACTGGGTGATATTTAAATATTTACCACGAGACCAACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR GCA 90 bp | ATATTTTCAATTCAACAACACAGCACTGTTGTTTTACCTTGGGCTCCCTCAGACCTATACAGTCCTTTCTaGTATCACTCCAGGATTTCT | + |
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Preference number: 4 (lower is better) Translates to: IFSIQQHSTVVLPWAPSDLYSPF*YHSRIS Trigger: AGAAATCCTGGAGTGATAGCAGAAAGGACTGTATAG...GTCTGAGGGAGCCCAAGGTAAAACAACAGTGCTGTGTTGTTGAATTGAAAATAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032261.9 |
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| CDS-3UTR CCA 90 bp | CTGTGTTGGTCTCGTGGTAAATATTTAAATATCACCCAGTATCCATGTAGACATCAGATTGTCCTGCTGTaGATGGATGCTTTTCTGAAG | + |
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Preference number: 4 (lower is better) Translates to: LCWSRGKYLNITQYPCRHQIVLL*MDAFLK Trigger: CTTCAGAAAAGCATCCATCCACAGCAGGACAATCTG...ATGTCTACATGGATACTGGGTGATATTTAAATATTTACCACGAGACCAACACAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR TCA 90 bp | AACGTTCTGAGAAGCAGGTTTGTCCGTGCAATAGTTTTAAGTACACAGTCAATTCTGACTCAACTTCTCTaGATCAGAGTTAATGTCATT | + |
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Preference number: 4 (lower is better) Translates to: NVLRSRFVRAIVLSTQSILTQLL*IRVNVI Trigger: AATGACATTAACTCTGATTCAGAGAAGTTGAGTCAG...AATTGACTGTGTACTTAAAACTATTGCACGGACAAACCTGCTTCTCAGAACGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS CCA 90 bp | GTAGCCATCTGCTCCTGCCTCTCCAGTAGGGCAGAGATCTGGGACTaGAGAGACTCCTCCGTCAGACTCTTTCTGGAGCTGTTCAGTGAT | + |
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Preference number: 5 (lower is better) Translates to: VAICSCLSSRAEIWD*RDSSVRLFLELFSD Trigger: ATCACTGAACAGCTCCAGAAAGAGTCTGACGGAGGAGTCTCTCCAGTCCCAGATCTCTGCCCTACTGGAGAGGCAGGAGCAGATGGCTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS CCA 90 bp | GGGCAGAGATCTGGGACTGGAGAGACTCCTCCGTCAGACTCTTTCTaGAGCTGTTCAGTGATTCAGACAGATTGTCCTGCTGTGGATGGA | + |
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Preference number: 5 (lower is better) Translates to: GQRSGTGETPPSDSF*SCSVIQTDCPAVDG Trigger: TCCATCCACAGCAGGACAATCTGTCTGAATCACTGAACAGCTCCAGAAAGAGTCTGACGGAGGAGTCTCTCCAGTCCCAGATCTCTGCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR CAA 90 bp | CAGGGGTCTCCTAGAACTTGCTCCCAAACTGTGGCCTGTGTTGGTCTCGTGGTATGGATGAGGAATTCCTaGCAGAGTTTGGTAGCCATC | + |
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Preference number: 5 (lower is better) Translates to: QGSPRTCSQTVACVGLVVWMRNS*QSLVAI Trigger: GATGGCTACCAAACTCTGCAAGGAATTCCTCATCCA...TACCACGAGACCAACACAGGCCACAGTTTGGGAGCAAGTTCTAGGAGACCCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS TCA 90 bp | CAGAGGGTCATCAAACTCAAGGCAGCGCCTCGCCAAAGTGAGGATTaGGCTGGGTGTCCTTCTTTTCTTAGGTTATTTCCATCCCGATTC | + |
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Preference number: 5 (lower is better) Translates to: QRVIKLKAAPRQSED*AGCPSFLRLFPSRF Trigger: GAATCGGGATGGAAATAACCTAAGAAAAGAAGGACACCCAGCTCAATCCTCACTTTGGCGAGGCGCTGCCTTGAGTTTGATGACCCTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS TCA 90 bp | CCAGGACAATCCCAGCCAAAAGAAAGAAAATGTGAGGGACAGCTGTaGCTGAAGGAGATCCCTTTCTTCGGTGCTGTCAATCTTCACCAG | + |
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Preference number: 5 (lower is better) Translates to: PGQSQPKERKCEGQL*LKEIPFFGAVNLHQ Trigger: CTGGTGAAGATTGACAGCACCGAAGAAAGGGATCTCCTTCAGTCACAGCTGTCCCTCACATTTTCTTTCTTTTGGCTGGGATTGTCCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR CAA 90 bp | AACAGGTCAGAGGGAATCAGACGTGAAGAGGAGAACGTTCTGAGAAGCAGGTTTTACCATTGCCATGTCTaGGGACAAGGGTTGCATTTA | + |
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Preference number: 5 (lower is better) Translates to: NRSEGIRREEENVLRSRFYHCHV*GQGLHL Trigger: TAAATGCAACCCTTGTCCCAAGACATGGCAATGGTA...AAACCTGCTTCTCAGAACGTTCTCCTCTTCACGTCTGATTCCCTCTGACCTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR CAA 90 bp | AGTAATCAGAACAGGTCAGAGGGAATCAGACGTGAAGAGGAGAACGTTCTGAGATACCATTGCCATGTCTaGGGACAAGGGTTGCATTTA | + |
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Preference number: 5 (lower is better) Translates to: SNQNRSEGIRREEENVLRYHCHV*GQGLHL Trigger: TAAATGCAACCCTTGTCCCAAGACATGGCAATGGTA...TCTCAGAACGTTCTCCTCTTCACGTCTGATTCCCTCTGACCTGTTCTGATTACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS TCA 90 bp | GTCCTGCTGTGGATGGATGCTTTTCTGAAGCTGACTCAACTTCTCTaGATCAGAGTTAATGTCATTAGACACCTGCAAAAACATAGTTGC | + |
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Preference number: 5 (lower is better) Translates to: VLLWMDAFLKLTQLL*IRVNVIRHLQKHSC Trigger: GCAACTATGTTTTTGCAGGTGTCTAATGACATTAACTCTGATTCAGAGAAGTTGAGTCAGCTTCAGAAAAGCATCCATCCACAGCAGGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR CAA 90 bp | GGCCTGTGTTGGTCTCGTGGTAAATATTTAAATATCACCCAGTATCCATGTAGAACCAGAGTGGCATTCTaGTCTATACAGTCCTTTCTG | + |
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Preference number: 5 (lower is better) Translates to: GLCWSRGKYLNITQYPCRTRVAF*SIQSFL Trigger: CAGAAAGGACTGTATAGACAAGAATGCCACTCTGGT...TCTACATGGATACTGGGTGATATTTAAATATTTACCACGAGACCAACACAGGCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS-3UTR CAA 90 bp | AATATTGTAGCTTTCTTCTTTCTTGCATGGGTTTGCAATAGGTCTTTACTTCTGTGGATGAGGAATTCCTaGCAGAGTTTGGTAGCCATC | + |
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Preference number: 5 (lower is better) Translates to: NIVAFFFLAWVCNRSLLLWMRNS*QSLVAI Trigger: GATGGCTACCAAACTCTGCAAGGAATTCCTCATCCA...CAGAAGTAAAGACCTATTGCAAACCCATGCAAGAAAGAAGAAAGCTACAATATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS TCA 90 bp | TGTCTATACAGTCCTTTCTGCTATCACTCCAGGATTTCTCTTCATTaGTTGAGAAATAGTAGCAACTGTTTCCATACCATTGCCATGTCT | + |
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Preference number: 5 (lower is better) Translates to: CLYSPFCYHSRISLH*LRNSSNCFHTIAMS Trigger: AGACATGGCAATGGTATGGAAACAGTTGCTACTATTTCTCAATCAATGAAGAGAAATCCTGGAGTGATAGCAGAAAGGACTGTATAGACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS CCA 72 bp | GCCATCTGCTCCTGCCTCTCCAGTAGGGCAGAGATCTaGGACTGGAGAGACTCCTCCGTCAGACTCTTTCTG | + |
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Preference number: 6 (lower is better) Translates to: AICSCLSSRAEI*DWRDSSVRLFL Trigger: CAGAAAGAGTCTGACGGAGGAGTCTCTCCAGTCCCAGATCTCTGCCCTACTGGAGAGGCAGGAGCAGATGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS GCA 72 bp | AGGAATTCCTTGCAGAGTTTGGTAGCCATCTGCTCCTaGCTCTCCAGTAGGGCAGAGATCTGGGACTGGAGA | + |
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Preference number: 6 (lower is better) Translates to: RNSLQSLVAICS*LSSRAEIWDWR Trigger: TCTCCAGTCCCAGATCTCTGCCCTACTGGAGAGGCAGGAGCAGATGGCTACCAAACTCTGCAAGGAATTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS GCA 72 bp | TGGATGAGGAATTCCTTGCAGAGTTTGGTAGCCATCTaGTCCTGCCTCTCCAGTAGGGCAGAGATCTGGGAC | + |
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Preference number: 6 (lower is better) Translates to: WMRNSLQSLVAI*SCLSSRAEIWD Trigger: GTCCCAGATCTCTGCCCTACTGGAGAGGCAGGAGCAGATGGCTACCAAACTCTGCAAGGAATTCCTCATCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS CAA 72 bp | TGGTCAGAAGCGTGGATGAGGAATTCCTTGCAGAGTTaGGTAGCCATCTGCTCCTGCCTCTCCAGTAGGGCA | + |
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Preference number: 6 (lower is better) Translates to: WSEAWMRNSLQS*VAICSCLSSRA Trigger: TGCCCTACTGGAGAGGCAGGAGCAGATGGCTACCAAACTCTGCAAGGAATTCCTCATCCACGCTTCTGACCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS CAA 90 bp | GGACAAGGGTTGCATTTATGGTCAGAAGCGTGGATGAGGAATTCCTaGCAGAGTTTGGTAGCCATCTGCTCCTGCCTCTCCAGTAGGGCA | + |
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Preference number: 6 (lower is better) Translates to: GQGLHLWSEAWMRNS*QSLVAICSCLSSRA Trigger: TGCCCTACTGGAGAGGCAGGAGCAGATGGCTACCAAACTCTGCAAGGAATTCCTCATCCACGCTTCTGACCATAAATGCAACCCTTGTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS CAA 90 bp | TTGCATTTATGGTCAGAAGCGTGGATGAGGAATTCCTTGCAGAGTTaGGTAGCCATCTGCTCCTGCCTCTCCAGTAGGGCAGAGATCTGG | + |
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Preference number: 6 (lower is better) Translates to: LHLWSEAWMRNSLQS*VAICSCLSSRAEIW Trigger: CCAGATCTCTGCCCTACTGGAGAGGCAGGAGCAGATGGCTACCAAACTCTGCAAGGAATTCCTCATCCACGCTTCTGACCATAAATGCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS CAA 72 bp | TTCTTAGGTTATTTCCATCCCGATTCCCCCTCACTCTaGCAGAGTCCTGAAGCATCAGTGTCGCATAGGTCA | + |
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Preference number: 6 (lower is better) Translates to: FLGYFHPDSPSL*QSPEASVSHRS Trigger: TGACCTATGCGACACTGATGCTTCAGGACTCTGCAAGAGTGAGGGGGAATCGGGATGGAAATAACCTAAGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS CAA 90 bp | GTCCTTCTTTTCTTAGGTTATTTCCATCCCGATTCCCCCTCACTCTaGCAGAGTCCTGAAGCATCAGTGTCGCATAGGTCACTTCATCAG | + |
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Preference number: 6 (lower is better) Translates to: VLLFLGYFHPDSPSL*QSPEASVSHRSLHQ Trigger: CTGATGAAGTGACCTATGCGACACTGATGCTTCAGGACTCTGCAAGAGTGAGGGGGAATCGGGATGGAAATAACCTAAGAAAAGAAGGAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS TCA 72 bp | ATCAAACTCAAGGCAGCGCCTCGCCAAAGTGAGGATTaGGCTGGGTGTCCTTCTTTTCTTAGGTTATTTCCA | + |
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Preference number: 6 (lower is better) Translates to: IKLKAAPRQSED*AGCPSFLRLFP Trigger: TGGAAATAACCTAAGAAAAGAAGGACACCCAGCTCAATCCTCACTTTGGCGAGGCGCTGCCTTGAGTTTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS TCA 72 bp | TCCCAGCCAAAAGAAAGAAAATGTGAGGGACAGCTGTaGCTGAAGGAGATCCCTTTCTTCGGTGCTGTCAAT | + |
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Preference number: 6 (lower is better) Translates to: SQPKERKCEGQL*LKEIPFFGAVN Trigger: ATTGACAGCACCGAAGAAAGGGATCTCCTTCAGTCACAGCTGTCCCTCACATTTTCTTTCTTTTGGCTGGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS CAA 72 bp | CTGTTTCCATACCATTGCCATGTCTTGGGACAAGGGTaGCATTTATGGTCAGAAGCGTGGATGAGGAATTCC | + |
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Preference number: 6 (lower is better) Translates to: LFPYHCHVLGQG*HLWSEAWMRNS Trigger: GGAATTCCTCATCCACGCTTCTGACCATAAATGCAACCCTTGTCCCAAGACATGGCAATGGTATGGAAACAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS TCA 72 bp | AGCCAAAAGAAAGAAAATGTGAGGGACAGCTGTGACTaGAGGAGATCCCTTTCTTCGGTGCTGTCAATCTTC | + |
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Preference number: 6 (lower is better) Translates to: SQKKENVRDSCD*RRSLSSVLSIF Trigger: GAAGATTGACAGCACCGAAGAAAGGGATCTCCTTCAGTCACAGCTGTCCCTCACATTTTCTTTCTTTTGGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS CAA 72 bp | TCTTCGGTGCTGTCAATCTTCACCAGAGTGGCATTCTaGTCTATACAGTCCTTTCTGCTATCACTCCAGGAT | + |
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Preference number: 6 (lower is better) Translates to: SSVLSIFTRVAF*SIQSFLLSLQD Trigger: ATCCTGGAGTGATAGCAGAAAGGACTGTATAGACAAGAATGCCACTCTGGTGAAGATTGACAGCACCGAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS GCA 72 bp | TCAGTGATTCAGACAGATTGTCCTGCTGTGGATGGATaGTTTTCTGAAGCTGACTCAACTTCTCTGAATCAG | + |
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Preference number: 6 (lower is better) Translates to: SVIQTDCPAVDG*FSEADSTSLNQ Trigger: CTGATTCAGAGAAGTTGAGTCAGCTTCAGAAAAGCATCCATCCACAGCAGGACAATCTGTCTGAATCACTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS TCA 72 bp | TGGATGGATGCTTTTCTGAAGCTGACTCAACTTCTCTaGATCAGAGTTAATGTCATTAGACACCTGCAAAAA | + |
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Preference number: 6 (lower is better) Translates to: WMDAFLKLTQLL*IRVNVIRHLQK Trigger: TTTTTGCAGGTGTCTAATGACATTAACTCTGATTCAGAGAAGTTGAGTCAGCTTCAGAAAAGCATCCATCCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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| CDS TCA 72 bp | AGTCCTTTCTGCTATCACTCCAGGATTTCTCTTCATTaGTTGAGAAATAGTAGCAACTGTTTCCATACCATT | + |
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Preference number: 6 (lower is better) Translates to: SPFCYHSRISLH*LRNSSNCFHTI Trigger: AATGGTATGGAAACAGTTGCTACTATTTCTCAATCAATGAAGAGAAATCCTGGAGTGATAGCAGAAAGGACT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032261.9 ENSMUST00000112082.9 |
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