RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CLEC12A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000053063

Ensembl transcript IDs: ENSMUST00000065289.6, ENSMUST00000151671.8

Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp CCCACATGGATCTCTGGTATTTTCTTCAGTCCACTTGGCCTCACTAACCAGGGTGCTACTGTGTTTGTGTaGGAGGAGACGCACACTGCC +
Preference number: 2 (lower is better)
Translates to: PTWISGIFFSPLGLTNQGATVFV*EETHTA
Trigger: GGCAGTGTGCGTCTCCTCTCACACAAACACAGTAGC...ACCCTGGTTAGTGAGGCCAAGTGGACTGAAGAAAATACCAGAGATCCATGTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
3UTR-3UTR GCA 90 bp GCTTTGATCGCTCTACTCCTGAACCCAAATGTGTGGCATCCCCTGGTGTCCCCAAGAGAAGAAATAGGCTaGATGGTCTTGTGTTCAGCG +
Preference number: 2 (lower is better)
Translates to: ALIALLLNPNVWHPLVSPREEIG*MVLCSA
Trigger: CGCTGAACACAAGACCATGCAGCCTATTTCTTCTCT...TGGGGACACCAGGGGATGCCACACATTTGGGTTCAGGAGTAGAGCGATCAAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
3UTR-3UTR TCA 90 bp TTTGATCGCTCTACTCCTGAACCCAAATGTGTGGCATCCCCTGGTGTCCCCACACAGCGCATTGTATGCTaGAAATACATGGTGAAAAGC +
Preference number: 2 (lower is better)
Translates to: FDRSTPEPKCVASPGVPTQRIVC*KYMVKS
Trigger: GCTTTTCACCATGTATTTTCAGCATACAATGCGCTG...TGTGGGGACACCAGGGGATGCCACACATTTGGGTTCAGGAGTAGAGCGATCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
3UTR-3UTR TCA 90 bp ATTTTCTTCAGTCCACTTGGCCTCACTAACCAGGGTGGGTTAGCAATAGATACTGACCAAGTATTCAAATaGGCCCTTGGGGGCCATTCT +
Preference number: 2 (lower is better)
Translates to: IFFSPLGLTNQGGLAIDTDQVFK*ALGGHS
Trigger: AGAATGGCCCCCAAGGGCTCATTTGAATACTTGGTC...AGTATCTATTGCTAACCCACCCTGGTTAGTGAGGCCAAGTGGACTGAAGAAAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
3UTR-3UTR GCA 90 bp CCCACATGGATCTCTGGTATTTTCTTCAGTCCACTTGGCCTCACTAACCAGGGTAAAGTACTCATCAAATaGTTCGCTATGTCAATTGCA +
Preference number: 2 (lower is better)
Translates to: PTWISGIFFSPLGLTNQGKVLIK*FAMSIA
Trigger: TGCAATTGACATAGCGAAGCATTTGATGAGTACTTT...ACCCTGGTTAGTGAGGCCAAGTGGACTGAAGAAAATACCAGAGATCCATGTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
3UTR-3UTR CCA 90 bp TGGGTTAGCAATAGATACTCCCATCTATTGTCCTCCCAGCTTTGGTCTAATTCTATTCAAATGAGCCCTTaGGGGCCATTCTCATTCAAA +
Preference number: 2 (lower is better)
Translates to: WVSNRYSHLLSSQLWSNSIQMSP*GPFSFK
Trigger: TTTGAATGAGAATGGCCCCCAAGGGCTCATTTGAAT...AGAATTAGACCAAAGCTGGGAGGACAATAGATGGGAGTATCTATTGCTAACCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
3UTR-3UTR CCA 90 bp AAGAGAAGAAATAGGCTGCATGGTCTTGTGTTCAGCGCATTGTATGCTGAAAATAGAACTAACTGGGAATaGCATGGGCTTTTGAAAACG +
Preference number: 2 (lower is better)
Translates to: KRRNRLHGLVFSALYAENRTNWE*HGLLKT
Trigger: CGTTTTCAAAAGCCCATGCCATTCCCAGTTAGTTCT...ATTTTCAGCATACAATGCGCTGAACACAAGACCATGCAGCCTATTTCTTCTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
3UTR-3UTR CCA 90 bp GCAATAGATACTCCCATCTATTGTCCTCCCAGCTTTGGTCTAATTCTGATCTTTAGGTTGAAATTTGCCTaGTTTATCTTTGGGGAAAAA +
Preference number: 2 (lower is better)
Translates to: AIDTPIYCPPSFGLILIFRLKFA*FIFGEK
Trigger: TTTTTCCCCAAAGATAAACCAGGCAAATTTCAACCT...AAAGATCAGAATTAGACCAAAGCTGGGAGGACAATAGATGGGAGTATCTATTGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
3UTR-3UTR CAA 90 bp GCTTTGATCGCTCTACTCCTGAACCCAAATGTGTGGCATCCCCTGGTGTCCCCAGAATGGCATGGGCTTTaGAAAACGCAAAGCCCACTC +
Preference number: 3 (lower is better)
Translates to: ALIALLLNPNVWHPLVSPEWHGL*KTQSPL
Trigger: GAGTGGGCTTTGCGTTTTCAAAAGCCCATGCCATTC...TGGGGACACCAGGGGATGCCACACATTTGGGTTCAGGAGTAGAGCGATCAAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
3UTR-3UTR CAA 90 bp GCTTTGATCGCTCTACTCCTGAACCCAAATGTGTGGCATCCCCTGGTGTCCCCAATAGGCTGCATGGTCTaGTGTTCAGCGCATTGTATG +
Preference number: 3 (lower is better)
Translates to: ALIALLLNPNVWHPLVSPIGCMV*CSAHCM
Trigger: CATACAATGCGCTGAACACAAGACCATGCAGCCTAT...TGGGGACACCAGGGGATGCCACACATTTGGGTTCAGGAGTAGAGCGATCAAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
3UTR TCA 72 bp GAAACAGTTCCACCAGCAGAGGACCAAGTATTCAAATaGGCCCTTGGGGGCCATTCTCATTCAAACCATCAC +
Preference number: 3 (lower is better)
Translates to: ETVPPAEDQVFK*ALGGHSHSNHH
Trigger: GTGATGGTTTGAATGAGAATGGCCCCCAAGGGCTCATTTGAATACTTGGTCCTCTGCTGGTGGAACTGTTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
3UTR-3UTR CAA 90 bp ATTTTCTTCAGTCCACTTGGCCTCACTAACCAGGGTGGGTTAGCAATAGATACTAATTTGGCTCCTGGTTaGGGAGGGTTAGAGTCCATG +
Preference number: 3 (lower is better)
Translates to: IFFSPLGLTNQGGLAIDTNLAPG*GGLESM
Trigger: CATGGACTCTAACCCTCCCAAACCAGGAGCCAAATT...AGTATCTATTGCTAACCCACCCTGGTTAGTGAGGCCAAGTGGACTGAAGAAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
3UTR TCA 72 bp TGTGTGAGAGGAGACGCACACTGCCTACAGTTCTTCTaGGTGACAGATGTCTTAGCAACCTTTCAATTGCTG +
Preference number: 3 (lower is better)
Translates to: CVRGDAHCLQFF*VTDVLATFQLL
Trigger: CAGCAATTGAAAGGTTGCTAAGACATCTGTCACTCAGAAGAACTGTAGGCAGTGTGCGTCTCCTCTCACACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
3UTR-3UTR CAA 90 bp GCAATAGATACTCCCATCTATTGTCCTCCCAGCTTTGGTCTAATTCTGATCTTTCTTGTGTTCAGCGCATaGTATGCTGAAAATACATGG +
Preference number: 3 (lower is better)
Translates to: AIDTPIYCPPSFGLILIFLVFSA*YAENTW
Trigger: CCATGTATTTTCAGCATACAATGCGCTGAACACAAG...AAAGATCAGAATTAGACCAAAGCTGGGAGGACAATAGATGGGAGTATCTATTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
3UTR-3UTR CAA 90 bp GCAATAGATACTCCCATCTATTGTCCTCCCAGCTTTGGTCTAATTCTGATCTTTGCTTCGCTATGTCAATaGCAAAGTTTATTTTCCCTC +
Preference number: 3 (lower is better)
Translates to: AIDTPIYCPPSFGLILIFASLCQ*QSLFSL
Trigger: GAGGGAAAATAAACTTTGCAATTGACATAGCGAAGC...AAAGATCAGAATTAGACCAAAGCTGGGAGGACAATAGATGGGAGTATCTATTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS-3UTR TCA 90 bp CCCACATGGATCTCTGGTATTTTCTTCAGTCCACTTGGCCTCACTAACCAGGGTGAGCAGAGCAGGCCATaGCACTCTCTTGCCATGTTC +
Preference number: 4 (lower is better)
Translates to: PTWISGIFFSPLGLTNQGEQSRP*HSLAMF
Trigger: GAACATGGCAAGAGAGTGTCATGGCCTGCTCTGCTC...ACCCTGGTTAGTGAGGCCAAGTGGACTGAAGAAAATACCAGAGATCCATGTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS-3UTR GCA 90 bp AATGAGCCCTTGGGGGCCATTCTCATTCAAACCATCACAGCAGGAGAGCAGCTATGGGTGGCTGTGCTTTaGAGCATGGCAGAAAGGTTC +
Preference number: 4 (lower is better)
Translates to: NEPLGAILIQTITAGEQLWVAVL*SMAERF
Trigger: GAACCTTTCTGCCATGCTGCAAAGCACAGCCACCCA...TAGCTGCTCTCCTGCTGTGATGGTTTGAATGAGAATGGCCCCCAAGGGCTCATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS-3UTR CCA 90 bp ATTTTCTTCAGTCCACTTGGCCTCACTAACCAGGGTGGGTTAGCAATAGATACTCTCGGCACAGCTGGGTaGCTGTGCTTTGCAGCATGG +
Preference number: 4 (lower is better)
Translates to: IFFSPLGLTNQGGLAIDTLGTAG*LCFAAW
Trigger: CCATGCTGCAAAGCACAGCCACCCAGCTGTGCCGAG...AGTATCTATTGCTAACCCACCCTGGTTAGTGAGGCCAAGTGGACTGAAGAAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS-3UTR TCA 90 bp CCTCTAACAAGGTCACACCTTCTGGTGTCTCTGAAACAGTTCCACCAGCAGAGGAGACCCCCATTCCAATaGACAGCAGAAGGCATAGAA +
Preference number: 4 (lower is better)
Translates to: PLTRSHLLVSLKQFHQQRRPPFQ*TAEGIE
Trigger: TTCTATGCCTTCTGCTGTTCATTGGAATGGGGGTCT...CCTCTGCTGGTGGAACTGTTTCAGAGACACCAGAAGGTGTGACCTTGTTAGAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS-3UTR CCA 90 bp CTTGGGGGCCATTCTCATTCAAACCATCACAGCAGGAGAGCAGCTAGGGACAAGCCTGAAGTTCTTCCTTaGCCCTTTGCAATTGATTCG +
Preference number: 4 (lower is better)
Translates to: LGGHSHSNHHSRRAARDKPEVLP*PFAIDS
Trigger: CGAATCAATTGCAAAGGGCCAAGGAAGAACTTCAGG...CTTGTCCCTAGCTGCTCTCCTGCTGTGATGGTTTGAATGAGAATGGCCCCCAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS-3UTR TCA 90 bp CCTCTAACAAGGTCACACCTTCTGGTGTCTCTGAAACAGTTCCACCAGCAGAGGGTCCTTGTACCATTCTaGACCCTTTGGACATGGTTT +
Preference number: 4 (lower is better)
Translates to: PLTRSHLLVSLKQFHQQRVLVPF*TLWTWF
Trigger: AAACCATGTCCAAAGGGTTCAGAATGGTACAAGGAC...CCTCTGCTGGTGGAACTGTTTCAGAGACACCAGAAGGTGTGACCTTGTTAGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS-3UTR CCA 90 bp ATGCAGGCAGACAAGGTCCTAAGCAGTAGCTGTGAGCTCACAGCTCAATCCACAGTGTGCGATCTTTTCTaGGCAACAATGCAAGCCAAA +
Preference number: 4 (lower is better)
Translates to: MQADKVLSSSCELTAQSTVCDLF*ATMQAK
Trigger: TTTGGCTTGCATTGTTGCCCAGAAAAGATCGCACAC...TGTGGATTGAGCTGTGAGCTCACAGCTACTGCTTAGGACCTTGTCTGCCTGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS-3UTR TCA 90 bp ATGCAGGCAGACAAGGTCCTAAGCAGTAGCTGTGAGCTCACAGCTCAATCCACATTTTCTTGGAGCTGTTaGGATTGTGCTTCAGCTGTA +
Preference number: 4 (lower is better)
Translates to: MQADKVLSSSCELTAQSTFSWSC*DCASAV
Trigger: TACAGCTGAAGCACAATCTCAACAGCTCCAAGAAAA...TGTGGATTGAGCTGTGAGCTCACAGCTACTGCTTAGGACCTTGTCTGCCTGCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS-3UTR GCA 90 bp ATTTTCTTCAGTCCACTTGGCCTCACTAACCAGGGTGGGTTAGCAATAGATACTACAGCTGGGTGGCTGTaGTTTGCAGCATGGCAGAAA +
Preference number: 4 (lower is better)
Translates to: IFFSPLGLTNQGGLAIDTTAGWL*FAAWQK
Trigger: TTTCTGCCATGCTGCAAAGCACAGCCACCCAGCTGT...AGTATCTATTGCTAACCCACCCTGGTTAGTGAGGCCAAGTGGACTGAAGAAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS-3UTR TCA 90 bp CTTGGGGGCCATTCTCATTCAAACCATCACAGCAGGAGAGCAGCTAGGGACAAGATGTTCCATACTGATTaGGTTGAGAATAACAGCTGT +
Preference number: 4 (lower is better)
Translates to: LGGHSHSNHHSRRAARDKMFHTD*VENNSC
Trigger: ACAGCTGTTATTCTCAACTCAATCAGTATGGAACAT...CTTGTCCCTAGCTGCTCTCCTGCTGTGATGGTTTGAATGAGAATGGCCCCCAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS-3UTR TCA 90 bp CCTCTAACAAGGTCACACCTTCTGGTGTCTCTGAAACAGTTCCACCAGCAGAGGCAGGGTCCTGGATTTTaGGATTTGCATAAACAATTT +
Preference number: 4 (lower is better)
Translates to: PLTRSHLLVSLKQFHQQRQGPGF*DLHKQF
Trigger: AAATTGTTTATGCAAATCTCAAAATCCAGGACCCTG...CCTCTGCTGGTGGAACTGTTTCAGAGACACCAGAAGGTGTGACCTTGTTAGAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS-3UTR CCA 90 bp ACCTCCTCTAACAAGGTCACACCTTCTGGTGTCTCTGAAACAGTTCCACCAGCATTTACATTTGTGCTCTaGTTCTTTGCTATACAGCTC +
Preference number: 4 (lower is better)
Translates to: TSSNKVTPSGVSETVPPAFTFVL*FFAIQL
Trigger: GAGCTGTATAGCAAAGAACCAGAGCACAAATGTAAA...TGCTGGTGGAACTGTTTCAGAGACACCAGAAGGTGTGACCTTGTTAGAGGAGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS-3UTR GCA 90 bp TGGGTTAGCAATAGATACTCCCATCTATTGTCCTCCCAGCTTTGGTCTAATTCTTTTCCAACTGCACCTTaGTGGCTGTCTCTTCACATA +
Preference number: 4 (lower is better)
Translates to: WVSNRYSHLLSSQLWSNSFPTAP*WLSLHI
Trigger: TATGTGAAGAGACAGCCAGCAAGGTGCAGTTGGAAA...AGAATTAGACCAAAGCTGGGAGGACAATAGATGGGAGTATCTATTGCTAACCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS-3UTR TCA 90 bp GCAATAGATACTCCCATCTATTGTCCTCCCAGCTTTGGTCTAATTCTGATCTTTAGGGAAACATTTTCCTaGAGTTCTTCCTTGGCCCTT +
Preference number: 4 (lower is better)
Translates to: AIDTPIYCPPSFGLILIFRETFS*SSSLAL
Trigger: AAGGGCCAAGGAAGAACTTCAGGAAAATGTTTCCCT...AAAGATCAGAATTAGACCAAAGCTGGGAGGACAATAGATGGGAGTATCTATTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS-3UTR GCA 90 bp ATGAGACAAAGAAATCTAGACATAAACACTACAGAGAGGCAGGACTGTAGTTGTAACACACTTTCCAACTaGACCTTGCTGGCTGTCTCT +
Preference number: 4 (lower is better)
Translates to: MRQRNLDINTTERQDCSCNTLSN*TLLAVS
Trigger: AGAGACAGCCAGCAAGGTGCAGTTGGAAAGTGTGTT...ACAACTACAGTCCTGCCTCTCTGTAGTGTTTATGTCTAGATTTCTTTGTCTCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS-3UTR GCA 90 bp TGGGTTAGCAATAGATACTCCCATCTATTGTCCTCCCAGCTTTGGTCTAATTCTAAGTTGTATAAAAGATaGCTCCTAAGACCCCCATTC +
Preference number: 4 (lower is better)
Translates to: WVSNRYSHLLSSQLWSNSKLYKR*LLRPPF
Trigger: GAATGGGGGTCTTAGGAGGCATCTTTTATACAACTT...AGAATTAGACCAAAGCTGGGAGGACAATAGATGGGAGTATCTATTGCTAACCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS-3UTR TCA 90 bp GCAATAGATACTCCCATCTATTGTCCTCCCAGCTTTGGTCTAATTCTGATCTTTCTGTCTCTTCACATATaGTATTGTTCTCATCAGTGC +
Preference number: 4 (lower is better)
Translates to: AIDTPIYCPPSFGLILIFLSLHI*YCSHQC
Trigger: GCACTGATGAGAACAATATCATATGTGAAGAGACAG...AAAGATCAGAATTAGACCAAAGCTGGGAGGACAATAGATGGGAGTATCTATTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS-3UTR GCA 90 bp AGCTTTATTACGACAGGGTATAAAGTACTCATCAAATGCTTCGCTATGTCAATTTGTGCTCTGGTTCTTTaGTATACAGCTCTCGGCACA +
Preference number: 4 (lower is better)
Translates to: SFITTGYKVLIKCFAMSICALVL*YTALGT
Trigger: TGTGCCGAGAGCTGTATAGCAAAGAACCAGAGCACA...AATTGACATAGCGAAGCATTTGATGAGTACTTTATACCCTGTCGTAATAAAGCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS-3UTR CAA 90 bp CCTCTAACAAGGTCACACCTTCTGGTGTCTCTGAAACAGTTCCACCAGCAGAGGCTTTCCAACTGCACCTaGCTGGCTGTCTCTTCACAT +
Preference number: 5 (lower is better)
Translates to: PLTRSHLLVSLKQFHQQRLSNCT*LAVSSH
Trigger: ATGTGAAGAGACAGCCAGCAAGGTGCAGTTGGAAAG...CCTCTGCTGGTGGAACTGTTTCAGAGACACCAGAAGGTGTGACCTTGTTAGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS GCA 90 bp GGTTCTTTGCTATACAGCTCTCGGCACAGCTGGGTGGCTGTGCTTTaGAGCATGGCAGAAAGGTTCTTGATTTTCTTGGAGCTGTTGAGA +
Preference number: 5 (lower is better)
Translates to: GSLLYSSRHSWVAVL*SMAERFLIFLELLR
Trigger: TCTCAACAGCTCCAAGAAAATCAAGAACCTTTCTGCCATGCTGCAAAGCACAGCCACCCAGCTGTGCCGAGAGCTGTATAGCAAAGAACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065289.6
ENSMUST00000151671.8
CDS-3UTR CAA 90 bp CTTGGGGGCCATTCTCATTCAAACCATCACAGCAGGAGAGCAGCTAGGGACAAGACTTTTCCCCCACATTaGTCAGACTTCTGGGTTTCT +
Preference number: 5 (lower is better)
Translates to: LGGHSHSNHHSRRAARDKTFPPH*SDFWVS
Trigger: AGAAACCCAGAAGTCTGACAAATGTGGGGGAAAAGT...CTTGTCCCTAGCTGCTCTCCTGCTGTGATGGTTTGAATGAGAATGGCCCCCAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS GCA 90 bp ATTCTGAACCCTTTGGACATGGTTTACATTTGTGCTCTGGTTCTTTaGTATACAGCTCTCGGCACAGCTGGGTGGCTGTGCTTTGCAGCA +
Preference number: 5 (lower is better)
Translates to: ILNPLDMVYICALVL*YTALGTAGWLCFAA
Trigger: TGCTGCAAAGCACAGCCACCCAGCTGTGCCGAGAGCTGTATAGCAAAGAACCAGAGCACAAATGTAAACCATGTCCAAAGGGTTCAGAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065289.6
ENSMUST00000151671.8
CDS GCA 90 bp CTGTCCTTGTACCATTCTGAACCCTTTGGACATGGTTTACATTTGTaGTCTGGTTCTTTGCTATACAGCTCTCGGCACAGCTGGGTGGCT +
Preference number: 5 (lower is better)
Translates to: LSLYHSEPFGHGLHL*SGSLLYSSRHSWVA
Trigger: AGCCACCCAGCTGTGCCGAGAGCTGTATAGCAAAGAACCAGAGCACAAATGTAAACCATGTCCAAAGGGTTCAGAATGGTACAAGGACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065289.6
ENSMUST00000151671.8
CDS-3UTR CAA 90 bp TTTGATCGCTCTACTCCTGAACCCAAATGTGTGGCATCCCCTGGTGTCCCCACAATTTTCTTGGAGCTGTaGAGATTGTGCTTCAGCTGT +
Preference number: 5 (lower is better)
Translates to: FDRSTPEPKCVASPGVPTIFLEL*RLCFSC
Trigger: ACAGCTGAAGCACAATCTCAACAGCTCCAAGAAAAT...TGTGGGGACACCAGGGGATGCCACACATTTGGGTTCAGGAGTAGAGCGATCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS-3UTR CAA 90 bp GCTTTGATCGCTCTACTCCTGAACCCAAATGTGTGGCATCCCCTGGTGTCCCCAACCATTCTGAACCCTTaGGACATGGTTTACATTTGT +
Preference number: 5 (lower is better)
Translates to: ALIALLLNPNVWHPLVSPTILNP*DMVYIC
Trigger: ACAAATGTAAACCATGTCCAAAGGGTTCAGAATGGT...TGGGGACACCAGGGGATGCCACACATTTGGGTTCAGGAGTAGAGCGATCAAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS CCA 90 bp TTACATTTGTGCTCTGGTTCTTTGCTATACAGCTCTCGGCACAGCTaGGTGGCTGTGCTTTGCAGCATGGCAGAAAGGTTCTTGATTTTC +
Preference number: 5 (lower is better)
Translates to: LHLCSGSLLYSSRHS*VAVLCSMAERFLIF
Trigger: GAAAATCAAGAACCTTTCTGCCATGCTGCAAAGCACAGCCACCCAGCTGTGCCGAGAGCTGTATAGCAAAGAACCAGAGCACAAATGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065289.6
ENSMUST00000151671.8
CDS-3UTR CAA 90 bp GAAAACGCAAAGCCCACTCTCAATGACACAACCTCCTCTAACAAGGTCACACCTGGCCATGACACTCTCTaGCCATGTTCCATACTGATT +
Preference number: 5 (lower is better)
Translates to: ENAKPTLNDTTSSNKVTPGHDTL*PCSILI
Trigger: AATCAGTATGGAACATGGCAAGAGAGTGTCATGGCC...AGGTGTGACCTTGTTAGAGGAGGTTGTGTCATTGAGAGTGGGCTTTGCGTTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS-3UTR CAA 90 bp CCCACATGGATCTCTGGTATTTTCTTCAGTCCACTTGGCCTCACTAACCAGGGTTCCATACTGATTGAGTaGAGAATAACAGCTGTCCTT +
Preference number: 5 (lower is better)
Translates to: PTWISGIFFSPLGLTNQGSILIE*RITAVL
Trigger: AAGGACAGCTGTTATTCTCAACTCAATCAGTATGGA...ACCCTGGTTAGTGAGGCCAAGTGGACTGAAGAAAATACCAGAGATCCATGTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS GCA 90 bp CAGACTCTTCAGAGAGGAACATCTTCTCACTTAGTGGATATTGTGTaGGATCTTTTCTGGGCAACAATGCAAGCCAAAAATAGCGTAGCT +
Preference number: 5 (lower is better)
Translates to: QTLQRGTSSHLVDIV*DLFWATMQAKNSVA
Trigger: AGCTACGCTATTTTTGGCTTGCATTGTTGCCCAGAAAAGATCGCACACAATATCCACTAAGTGAGAAGATGTTCCTCTCTGAAGAGTCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS-3UTR CAA 90 bp ATTTTCTTCAGTCCACTTGGCCTCACTAACCAGGGTGGGTTAGCAATAGATACTAGGTTCTTGATTTTCTaGGAGCTGTTGAGATTGTGC +
Preference number: 5 (lower is better)
Translates to: IFFSPLGLTNQGGLAIDTRFLIF*ELLRLC
Trigger: GCACAATCTCAACAGCTCCAAGAAAATCAAGAACCT...AGTATCTATTGCTAACCCACCCTGGTTAGTGAGGCCAAGTGGACTGAAGAAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS-3UTR CAA 90 bp TGGGTTAGCAATAGATACTCCCATCTATTGTCCTCCCAGCTTTGGTCTAATTCTATGGCAGAAAGGTTCTaGATTTTCTTGGAGCTGTTG +
Preference number: 5 (lower is better)
Translates to: WVSNRYSHLLSSQLWSNSMAERF*IFLELL
Trigger: CAACAGCTCCAAGAAAATCAAGAACCTTTCTGCCAT...AGAATTAGACCAAAGCTGGGAGGACAATAGATGGGAGTATCTATTGCTAACCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS TCA 90 bp TCCATACTGATTGAGTTGAGAATAACAGCTGTCCTTGTACCATTCTaGACCCTTTGGACATGGTTTACATTTGTGCTCTGGTTCTTTGCT +
Preference number: 5 (lower is better)
Translates to: SILIELRITAVLVPF*TLWTWFTFVLWFFA
Trigger: AGCAAAGAACCAGAGCACAAATGTAAACCATGTCCAAAGGGTTCAGAATGGTACAAGGACAGCTGTTATTCTCAACTCAATCAGTATGGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065289.6
ENSMUST00000151671.8
CDS CCA 90 bp GATTGTGCTTCAGCTGTAGGGAAACATTTTCCTGAAGTTCTTCCTTaGCCCTTTGCAATTGATTCGATTTTATCATTTCTGTTGCCAAAG +
Preference number: 5 (lower is better)
Translates to: DCASAVGKHFPEVLP*PFAIDSILSFLLPK
Trigger: CTTTGGCAACAGAAATGATAAAATCGAATCAATTGCAAAGGGCCAAGGAAGAACTTCAGGAAAATGTTTCCCTACAGCTGAAGCACAATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065289.6
ENSMUST00000151671.8
CDS-3UTR CAA 90 bp TGGGTTAGCAATAGATACTCCCATCTATTGTCCTCCCAGCTTTGGTCTAATTCTTTTCTGTTGCCAAAGTaGTATAAAAGATGCCTCCTA +
Preference number: 5 (lower is better)
Translates to: WVSNRYSHLLSSQLWSNSFLLPK*YKRCLL
Trigger: TAGGAGGCATCTTTTATACAACTTTGGCAACAGAAA...AGAATTAGACCAAAGCTGGGAGGACAATAGATGGGAGTATCTATTGCTAACCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS-3UTR CAA 90 bp CCTTTCAATTGCTGTGACAAAAACACCTTGACCAAGGTTACTTATAAAAAGAAGTTGGAGCTGTTGAGATaGTGCTTCAGCTGTAGGGAA +
Preference number: 5 (lower is better)
Translates to: PFNCCDKNTLTKVTYKKKLELLR*CFSCRE
Trigger: TTCCCTACAGCTGAAGCACAATCTCAACAGCTCCAA...CTTCTTTTTATAAGTAACCTTGGTCAAGGTGTTTTTGTCACAGCAATTGAAAGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS-3UTR CAA 90 bp ATGAGACAAAGAAATCTAGACATAAACACTACAGAGAGGCAGGACTGTAGTTGTCTTGGCCCTTTGCAATaGATTCGATTTTATCATTTC +
Preference number: 5 (lower is better)
Translates to: MRQRNLDINTTERQDCSCLGPLQ*IRFYHF
Trigger: GAAATGATAAAATCGAATCAATTGCAAAGGGCCAAG...ACAACTACAGTCCTGCCTCTCTGTAGTGTTTATGTCTAGATTTCTTTGTCTCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS GCA 72 bp CTATACAGCTCTCGGCACAGCTGGGTGGCTGTGCTTTaGAGCATGGCAGAAAGGTTCTTGATTTTCTTGGAG +
Preference number: 6 (lower is better)
Translates to: LYSSRHSWVAVL*SMAERFLIFLE
Trigger: CTCCAAGAAAATCAAGAACCTTTCTGCCATGCTGCAAAGCACAGCCACCCAGCTGTGCCGAGAGCTGTATAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065289.6
ENSMUST00000151671.8
CDS GCA 72 bp CCTTTGGACATGGTTTACATTTGTGCTCTGGTTCTTTaGTATACAGCTCTCGGCACAGCTGGGTGGCTGTGC +
Preference number: 6 (lower is better)
Translates to: PLDMVYICALVL*YTALGTAGWLC
Trigger: GCACAGCCACCCAGCTGTGCCGAGAGCTGTATAGCAAAGAACCAGAGCACAAATGTAAACCATGTCCAAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065289.6
ENSMUST00000151671.8
CDS CAA 72 bp CCCTTTGGACATGGTTTACATTTGTGCTCTGGTTCTTaGCTATACAGCTCTCGGCACAGCTGGGTGGCTGTG +
Preference number: 6 (lower is better)
Translates to: PFGHGLHLCSGS*LYSSRHSWVAV
Trigger: CACAGCCACCCAGCTGTGCCGAGAGCTGTATAGCAAAGAACCAGAGCACAAATGTAAACCATGTCCAAAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065289.6
ENSMUST00000151671.8
CDS CAA 90 bp TGGTTCTTTGCTATACAGCTCTCGGCACAGCTGGGTGGCTGTGCTTaGCAGCATGGCAGAAAGGTTCTTGATTTTCTTGGAGCTGTTGAG +
Preference number: 6 (lower is better)
Translates to: WFFAIQLSAQLGGCA*QHGRKVLDFLGAVE
Trigger: CTCAACAGCTCCAAGAAAATCAAGAACCTTTCTGCCATGCTGCAAAGCACAGCCACCCAGCTGTGCCGAGAGCTGTATAGCAAAGAACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065289.6
ENSMUST00000151671.8
CDS CAA 90 bp CATTCTGAACCCTTTGGACATGGTTTACATTTGTGCTCTGGTTCTTaGCTATACAGCTCTCGGCACAGCTGGGTGGCTGTGCTTTGCAGC +
Preference number: 6 (lower is better)
Translates to: HSEPFGHGLHLCSGS*LYSSRHSWVAVLCS
Trigger: GCTGCAAAGCACAGCCACCCAGCTGTGCCGAGAGCTGTATAGCAAAGAACCAGAGCACAAATGTAAACCATGTCCAAAGGGTTCAGAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065289.6
ENSMUST00000151671.8
CDS CAA 90 bp CTTCAGGAGGCTGGCATTCCGAGCAGAGCAGGCCATGACACTCTCTaGCCATGTTCCATACTGATTGAGTTGAGAATAACAGCTGTCCTT +
Preference number: 6 (lower is better)
Translates to: LQEAGIPSRAGHDTL*PCSILIELRITAVL
Trigger: AAGGACAGCTGTTATTCTCAACTCAATCAGTATGGAACATGGCAAGAGAGTGTCATGGCCTGCTCTGCTCGGAATGCCAGCCTCCTGAAG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065289.6
ENSMUST00000151671.8
CDS CAA 90 bp CAGCTGTCCTTGTACCATTCTGAACCCTTTGGACATGGTTTACATTaGTGCTCTGGTTCTTTGCTATACAGCTCTCGGCACAGCTGGGTG +
Preference number: 6 (lower is better)
Translates to: QLSLYHSEPFGHGLH*CSGSLLYSSRHSWV
Trigger: CACCCAGCTGTGCCGAGAGCTGTATAGCAAAGAACCAGAGCACAAATGTAAACCATGTCCAAAGGGTTCAGAATGGTACAAGGACAGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065289.6
ENSMUST00000151671.8
CDS CAA 72 bp TGGGTGGCTGTGCTTTGCAGCATGGCAGAAAGGTTCTaGATTTTCTTGGAGCTGTTGAGATTGTGCTTCAGC +
Preference number: 6 (lower is better)
Translates to: WVAVLCSMAERF*IFLELLRLCFS
Trigger: GCTGAAGCACAATCTCAACAGCTCCAAGAAAATCAAGAACCTTTCTGCCATGCTGCAAAGCACAGCCACCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065289.6
ENSMUST00000151671.8
CDS CAA 72 bp GCTGGCATTCCGAGCAGAGCAGGCCATGACACTCTCTaGCCATGTTCCATACTGATTGAGTTGAGAATAACA +
Preference number: 6 (lower is better)
Translates to: AGIPSRAGHDTL*PCSILIELRIT
Trigger: TGTTATTCTCAACTCAATCAGTATGGAACATGGCAAGAGAGTGTCATGGCCTGCTCTGCTCGGAATGCCAGC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065289.6
ENSMUST00000151671.8
CDS CAA 90 bp TGGGTGGCTGTGCTTTGCAGCATGGCAGAAAGGTTCTTGATTTTCTaGGAGCTGTTGAGATTGTGCTTCAGCTGTAGGGAAACATTTTCC +
Preference number: 6 (lower is better)
Translates to: WVAVLCSMAERFLIF*ELLRLCFSCRETFS
Trigger: GGAAAATGTTTCCCTACAGCTGAAGCACAATCTCAACAGCTCCAAGAAAATCAAGAACCTTTCTGCCATGCTGCAAAGCACAGCCACCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065289.6
ENSMUST00000151671.8
CDS GCA 72 bp CTATCCTCTGGGAGGCCATTCAACACACTTTCCAACTaGACCTTGCTGGCTGTCTCTTCACATATGATATTG +
Preference number: 6 (lower is better)
Translates to: LSSGRPFNTLSN*TLLAVSSHMIL
Trigger: CAATATCATATGTGAAGAGACAGCCAGCAAGGTGCAGTTGGAAAGTGTGTTGAATGGCCTCCCAGAGGATAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS GCA 72 bp TACCATTCTGAACCCTTTGGACATGGTTTACATTTGTaGTCTGGTTCTTTGCTATACAGCTCTCGGCACAGC +
Preference number: 6 (lower is better)
Translates to: YHSEPFGHGLHL*SGSLLYSSRHS
Trigger: GCTGTGCCGAGAGCTGTATAGCAAAGAACCAGAGCACAAATGTAAACCATGTCCAAAGGGTTCAGAATGGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065289.6
ENSMUST00000151671.8
CDS CAA 72 bp TTGTACCATTCTGAACCCTTTGGACATGGTTTACATTaGTGCTCTGGTTCTTTGCTATACAGCTCTCGGCAC +
Preference number: 6 (lower is better)
Translates to: LYHSEPFGHGLH*CSGSLLYSSRH
Trigger: GTGCCGAGAGCTGTATAGCAAAGAACCAGAGCACAAATGTAAACCATGTCCAAAGGGTTCAGAATGGTACAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065289.6
ENSMUST00000151671.8
CDS CAA 72 bp CGTAGCTTCTTGTACTTTATAAATTCCAGCACATCCTaGTTCTTAACCTTCAGGAGGCTGGCATTCCGAGCA +
Preference number: 6 (lower is better)
Translates to: RSFLYFINSSTS*FLTFRRLAFRA
Trigger: TGCTCGGAATGCCAGCCTCCTGAAGGTTAAGAACAAGGATGTGCTGGAATTTATAAAGTACAAGAAGCTACG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS TCA 72 bp ATTGAGTTGAGAATAACAGCTGTCCTTGTACCATTCTaGACCCTTTGGACATGGTTTACATTTGTGCTCTGG +
Preference number: 6 (lower is better)
Translates to: IELRITAVLVPF*TLWTWFTFVLW
Trigger: CCAGAGCACAAATGTAAACCATGTCCAAAGGGTTCAGAATGGTACAAGGACAGCTGTTATTCTCAACTCAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065289.6
ENSMUST00000151671.8
CDS CCA 72 bp TCTTCTCACTTAGTGGATATTGTGTGCGATCTTTTCTaGGCAACAATGCAAGCCAAAAATAGCGTAGCTTCT +
Preference number: 6 (lower is better)
Translates to: SSHLVDIVCDLF*ATMQAKNSVAS
Trigger: AGAAGCTACGCTATTTTTGGCTTGCATTGTTGCCCAGAAAAGATCGCACACAATATCCACTAAGTGAGAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6
CDS TCA 72 bp TTGTATAAAAGATGCCTCCTAAGACCCCCATTCCAATaGACAGCAGAAGGCATAGAAGAATCAGAATCAAGA +
Preference number: 6 (lower is better)
Translates to: LYKRCLLRPPFQ*TAEGIEESESR
Trigger: TCTTGATTCTGATTCTTCTATGCCTTCTGCTGTTCATTGGAATGGGGGTCTTAGGAGGCATCTTTTATACAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065289.6
ENSMUST00000151671.8
CDS CAA 72 bp TGGCCCTTTGCAATTGATTCGATTTTATCATTTCTGTaGCCAAAGTTGTATAAAAGATGCCTCCTAAGACCC +
Preference number: 6 (lower is better)
Translates to: WPFAIDSILSFL*PKLYKRCLLRP
Trigger: GGGTCTTAGGAGGCATCTTTTATACAACTTTGGCAACAGAAATGATAAAATCGAATCAATTGCAAAGGGCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065289.6
ENSMUST00000151671.8
CDS TCA 72 bp TTTCCAACTGCACCTTGCTGGCTGTCTCTTCACATATaGTATTGTTCTCATCAGTGCAGTATGTATAATAAA +
Preference number: 6 (lower is better)
Translates to: FPTAPCWLSLHI*YCSHQCSMYNK
Trigger: TTTATTATACATACTGCACTGATGAGAACAATATCATATGTGAAGAGACAGCCAGCAAGGTGCAGTTGGAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065289.6