Pregenerated sensors for CLEC10A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000000318Ensembl transcript IDs: ENSMUST00000000327.13, ENSMUST00000102571.10, ENSMUST00000144935.9, ENSMUST00000152635.2, ENSMUST00000153959.2, ENSMUST00000178567.3, ENSMUST00000178945.8
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACCACTGAAGAAATAAATTACTTGGCGAGAGCTCCTAGCTCTCCTTaGCCAGCTTCATCTCACAGATCCAGCGGAAGGTTCTCTGGCAGA | + |
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Preference number: 1 (lower is better) Translates to: TTEEINYLARAPSSP*PASSHRSSGRFSGR Trigger: TCTGCCAGAGAACCTTCCGCTGGATCTGTGAGATGAAGCTGGCCAAGGAGAGCTAGGAGCTCTCGCCAAGTAATTTATTTCTTCAGTGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153959.2 |
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| 3UTR-3UTR CCA 90 bp | TCAGCAACCTTATTCTTGCAAACACCACACTACCCAGCTCAAACACAATCCTTTCCACCTGTAGTGATGTaGGCACAGTCCTCACCTCCT | + |
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Preference number: 2 (lower is better) Translates to: SATLFLQTPHYPAQTQSFPPVVM*AQSSPP Trigger: AGGAGGTGAGGACTGTGCCCACATCACTACAGGTGG...AAAGGATTGTGTTTGAGCTGGGTAGTGTGGTGTTTGCAAGAATAAGGTTGCTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153959.2 |
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| 3UTR-3UTR TCA 90 bp | CTTGCAAACACCACACTACCCAGCTCAAACACAATCCTTTCTCCTTGCCTTAAATCCAAACTCCAGACTTaGGCAGCTGAAACCACTGAA | + |
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Preference number: 2 (lower is better) Translates to: LANTTLPSSNTILSPCLKSKLQT*AAETTE Trigger: TTCAGTGGTTTCAGCTGCTCAAGTCTGGAGTTTGGA...TTTAAGGCAAGGAGAAAGGATTGTGTTTGAGCTGGGTAGTGTGGTGTTTGCAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000153959.2 |
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| 3UTR-3UTR GCA 90 bp | CTTGCAAACACCACACTACCCAGCTCAAACACAATCCTTTCTCCTTGCCTTAAAACAATCCTTTCTCCTTaGCTTAAAATTCTTGGGGCG | + |
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Preference number: 2 (lower is better) Translates to: LANTTLPSSNTILSPCLKTILSP*LKILGA Trigger: CGCCCCAAGAATTTTAAGGCAAGGAGAAAGGATTGT...TTTAAGGCAAGGAGAAAGGATTGTGTTTGAGCTGGGTAGTGTGGTGTTTGCAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000153959.2 |
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| 3UTR-3UTR CCA 90 bp | TCAAAAGTTGCCTACAATAAGCTGCACACTGTACAAAATATCACAGATTTCAGCGCTCCTAGCTCTCCTTaGCCAGCTTCATCTCACAGA | + |
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Preference number: 2 (lower is better) Translates to: SKVAYNKLHTVQNITDFSAPSSP*PASSHR Trigger: TCTGTGAGATGAAGCTGGCCAAGGAGAGCTAGGAGC...GCTGAAATCTGTGATATTTTGTACAGTGTGCAGCTTATTGTAGGCAACTTTTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153959.2 |
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| 3UTR-3UTR GCA 90 bp | CAAAATATCACAGATTTCAGCAACCTTATTCTTGCAAACACCACACTACCCAGCCAGCAACCTTATTCTTaGAAACACCACACTACCCAG | + |
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Preference number: 2 (lower is better) Translates to: QNITDFSNLILANTTLPSQQPYS*KHHTTQ Trigger: CTGGGTAGTGTGGTGTTTGCAAGAATAAGGTTGCTG...GCTGGGTAGTGTGGTGTTTGCAAGAATAAGGTTGCTGAAATCTGTGATATTTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000153959.2 ENSMUST00000178945.8 |
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| 3UTR CAA 90 bp | AGCTGCACACTGTACAAAATATCACAGATTTCAGCAACCTTATTCTaGCAAACACCACACTACCCAGCTCAAACACAATCCTTTCTCCTT | + |
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Preference number: 2 (lower is better) Translates to: SCTLYKISQISATLF*QTPHYPAQTQSFLL Trigger: AAGGAGAAAGGATTGTGTTTGAGCTGGGTAGTGTGGTGTTTGCAAGAATAAGGTTGCTGAAATCTGTGATATTTTGTACAGTGTGCAGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000153959.2 |
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| 3UTR-3UTR TCA 90 bp | CCTACAATAAGCTGCACACTGTACAAAATATCACAGATTTCAGCAACCTTATTCTCCAAACTCCAGACTTaGGCAGCTGAAACCACTGAA | + |
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Preference number: 2 (lower is better) Translates to: PTISCTLYKISQISATLFSKLQT*AAETTE Trigger: TTCAGTGGTTTCAGCTGCTCAAGTCTGGAGTTTGGA...GAATAAGGTTGCTGAAATCTGTGATATTTTGTACAGTGTGCAGCTTATTGTAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000153959.2 |
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| 3UTR-3UTR GCA 90 bp | GTACAAAATATCACAGATTTCAGCAACCTTATTCTTGCAAACACCACACTACCCCAGCAACCTTATTCTTaGAAACACCACACTACCCAG | + |
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Preference number: 2 (lower is better) Translates to: VQNITDFSNLILANTTLPQQPYS*KHHTTQ Trigger: CTGGGTAGTGTGGTGTTTGCAAGAATAAGGTTGCTG...GGGTAGTGTGGTGTTTGCAAGAATAAGGTTGCTGAAATCTGTGATATTTTGTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000153959.2 ENSMUST00000178945.8 |
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| 3UTR-3UTR GCA 90 bp | GTTGCCTACAATAAGCTGCACACTGTACAAAATATCACAGATTTCAGCAACCTTACAATCCTTTCTCCTTaGCTTAAAATTCTTGGGGCG | + |
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Preference number: 2 (lower is better) Translates to: VAYNKLHTVQNITDFSNLTILSP*LKILGA Trigger: CGCCCCAAGAATTTTAAGGCAAGGAGAAAGGATTGT...AAGGTTGCTGAAATCTGTGATATTTTGTACAGTGTGCAGCTTATTGTAGGCAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000153959.2 |
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| 3UTR-3UTR GCA 90 bp | GTACAAAATATCACAGATTTCAGCAACCTTATTCTTGCAAACACCACACTACCCTTGCCTACAATAAGCTaGACACTGTACAAAATATCA | + |
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Preference number: 2 (lower is better) Translates to: VQNITDFSNLILANTTLPLPTIS*TLYKIS Trigger: TGATATTTTGTACAGTGTGCAGCTTATTGTAGGCAA...GGGTAGTGTGGTGTTTGCAAGAATAAGGTTGCTGAAATCTGTGATATTTTGTAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000153959.2 ENSMUST00000178945.8 |
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| 3UTR-3UTR CAA 90 bp | CCAGTAATGTTGAGACCGGGTAGGAGGATTCCAAACTCCAGACTTGAGCAGCTGGAAGAAATAAATTACTaGGCGAGAGCTCCTAGCTCT | + |
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Preference number: 3 (lower is better) Translates to: PVMLRPGRRIPNSRLEQLEEINY*ARAPSS Trigger: AGAGCTAGGAGCTCTCGCCAAGTAATTTATTTCTTC...CAGCTGCTCAAGTCTGGAGTTTGGAATCCTCCTACCCGGTCTCAACATTACTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153959.2 |
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| 3UTR GCA 72 bp | TGTACAAAATATCACAGATTTCAGCAACCTTATTCTTaGAAACACCACACTACCCAGCTCAAACACAATCCT | + |
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Preference number: 3 (lower is better) Translates to: CTKYHRFQQPYS*KHHTTQLKHNP Trigger: AGGATTGTGTTTGAGCTGGGTAGTGTGGTGTTTGCAAGAATAAGGTTGCTGAAATCTGTGATATTTTGTACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000153959.2 |
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| 3UTR-3UTR CAA 90 bp | GTTGCCTACAATAAGCTGCACACTGTACAAAATATCACAGATTTCAGCAACCTTTGTTACATTCAAAAGTaGCCTACAATAAGCTGCACA | + |
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Preference number: 3 (lower is better) Translates to: VAYNKLHTVQNITDFSNLCYIQK*PTISCT Trigger: TGTGCAGCTTATTGTAGGCAACTTTTGAATGTAACA...AAGGTTGCTGAAATCTGTGATATTTTGTACAGTGTGCAGCTTATTGTAGGCAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000178945.8 |
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| 3UTR-3UTR CAA 90 bp | ACAATAAGCTGCACACTGTACAAAATATCACAGATTTCAGCAACCTTATTCTTGTGTTACATTCAAAAGTaGCCTACAATAAGCTGCACA | + |
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Preference number: 3 (lower is better) Translates to: TISCTLYKISQISATLFLCYIQK*PTISCT Trigger: TGTGCAGCTTATTGTAGGCAACTTTTGAATGTAACA...CAAGAATAAGGTTGCTGAAATCTGTGATATTTTGTACAGTGTGCAGCTTATTGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000178945.8 |
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| CDS-3UTR TCA 90 bp | ATGTTGAGACCGGGTAGGAGGATTCCAAACTCCAGACTTGAGCAGCTGAAACCACCGAGCCGTTGTTCTTaGGGTTGGCCAGCTGGCACG | + |
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Preference number: 4 (lower is better) Translates to: MLRPGRRIPNSRLEQLKPPSRCS*GWPAGT Trigger: CGTGCCAGCTGGCCAACCTCAAGAACAACGGCTCGG...TGGTTTCAGCTGCTCAAGTCTGGAGTTTGGAATCCTCCTACCCGGTCTCAACAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000153959.2 |
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| CDS-3UTR GCA 90 bp | CACAGATTTCAGCAACCTTATTCTTGCAAACACCACACTACCCAGCTCAAACACGTGGGGCCCAGTTCCTaGTCCTCCAGGGAGTTGACC | + |
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Preference number: 4 (lower is better) Translates to: HRFQQPYSCKHHTTQLKHVGPSS*SSRELT Trigger: GGTCAACTCCCTGGAGGAGCAGGAACTGGGCCCCAC...GTGTTTGAGCTGGGTAGTGTGGTGTTTGCAAGAATAAGGTTGCTGAAATCTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153959.2 |
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| CDS-3UTR CCA 90 bp | ATGTTGAGACCGGGTAGGAGGATTCCAAACTCCAGACTTGAGCAGCTGAAACCACCACCTGTAGTGATGTaGGCACAGTCCTCACCTCCT | + |
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Preference number: 4 (lower is better) Translates to: MLRPGRRIPNSRLEQLKPPPVVM*AQSSPP Trigger: AGGAGGTGAGGACTGTGCCCACATCACTACAGGTGG...TGGTTTCAGCTGCTCAAGTCTGGAGTTTGGAATCCTCCTACCCGGTCTCAACAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 |
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| CDS-3UTR CCA 90 bp | CCGGGTAGGAGGATTCCAAACTCCAGACTTGAGCAGCTGAAACCACTGAAGAAATGGTGTTGTCTAAAGTaGCTCTCAGGGTGCCTAGGT | + |
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Preference number: 4 (lower is better) Translates to: PGRRIPNSRLEQLKPLKKWCCLK*LSGCLG Trigger: ACCTAGGCACCCTGAGAGCCACTTTAGACAACACCA...TTTCTTCAGTGGTTTCAGCTGCTCAAGTCTGGAGTTTGGAATCCTCCTACCCGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 |
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| CDS-3UTR TCA 90 bp | TCAAAAGTTGCCTACAATAAGCTGCACACTGTACAAAATATCACAGATTTCAGCCCGAGCCGTTGTTCTTaGGGTTGGCCAGCTGGCACG | + |
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Preference number: 4 (lower is better) Translates to: SKVAYNKLHTVQNITDFSPSRCS*GWPAGT Trigger: CGTGCCAGCTGGCCAACCTCAAGAACAACGGCTCGG...GCTGAAATCTGTGATATTTTGTACAGTGTGCAGCTTATTGTAGGCAACTTTTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000153959.2 ENSMUST00000178945.8 |
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| CDS-3UTR CCA 90 bp | ACAGATTTCAGCAACCTTATTCTTGCAAACACCACACTACCCAGCTCAAACACACGCCACAGGAAGGACTaGGAAGGAGCTGCTTTACCA | + |
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Preference number: 4 (lower is better) Translates to: TDFSNLILANTTLPSSNTRHRKD*EGAALP Trigger: TGGTAAAGCAGCTCCTTCCCAGTCCTTCCTGTGGCG...TGTGTTTGAGCTGGGTAGTGTGGTGTTTGCAAGAATAAGGTTGCTGAAATCTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000327.13 |
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| CDS-3UTR GCA 90 bp | AACCTTATTCTTGCAAACACCACACTACCCAGCTCAAACACAATCCTTTCTCCTTCTGTTTTGAGAGCCTaGTCCCTCTTCTCCACTGTG | + |
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Preference number: 4 (lower is better) Translates to: NLILANTTLPSSNTILSPSVLRA*SLFSTV Trigger: CACAGTGGAGAAGAGGGAGCAGGCTCTCAAAACAGA...AGGAGAAAGGATTGTGTTTGAGCTGGGTAGTGTGGTGTTTGCAAGAATAAGGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000153959.2 |
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| CDS-3UTR CCA 90 bp | CAGATTTCAGCAACCTTATTCTTGCAAACACCACACTACCCAGCTCAAACACAATGGTGTTGTCTAAAGTaGCTCTCAGGGTGCCTAGGT | + |
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Preference number: 4 (lower is better) Translates to: QISATLFLQTPHYPAQTQWCCLK*LSGCLG Trigger: ACCTAGGCACCCTGAGAGCCACTTTAGACAACACCA...TTGTGTTTGAGCTGGGTAGTGTGGTGTTTGCAAGAATAAGGTTGCTGAAATCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 |
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| CDS-3UTR CCA 90 bp | ACACTGTACAAAATATCACAGATTTCAGCAACCTTATTCTTGCAAACACCACACCGCCACAGGAAGGACTaGGAAGGAGCTGCTTTACCA | + |
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Preference number: 4 (lower is better) Translates to: TLYKISQISATLFLQTPHRHRKD*EGAALP Trigger: TGGTAAAGCAGCTCCTTCCCAGTCCTTCCTGTGGCG...GTGTGGTGTTTGCAAGAATAAGGTTGCTGAAATCTGTGATATTTTGTACAGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000327.13 ENSMUST00000178945.8 |
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| CDS-3UTR CCA 90 bp | TCAAAAGTTGCCTACAATAAGCTGCACACTGTACAAAATATCACAGATTTCAGCCCACCTGTAGTGATGTaGGCACAGTCCTCACCTCCT | + |
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Preference number: 4 (lower is better) Translates to: SKVAYNKLHTVQNITDFSPPVVM*AQSSPP Trigger: AGGAGGTGAGGACTGTGCCCACATCACTACAGGTGG...GCTGAAATCTGTGATATTTTGTACAGTGTGCAGCTTATTGTAGGCAACTTTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 |
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| CDS-3UTR CCA 90 bp | ACTGTACAAAATATCACAGATTTCAGCAACCTTATTCTTGCAAACACCACACTACGCCACAGGAAGGACTaGGAAGGAGCTTTACCAGGC | + |
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Preference number: 4 (lower is better) Translates to: TVQNITDFSNLILANTTLRHRKD*EGALPG Trigger: GCCTGGTAAAGCTCCTTCCCAGTCCTTCCTGTGGCG...TAGTGTGGTGTTTGCAAGAATAAGGTTGCTGAAATCTGTGATATTTTGTACAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102571.10 |
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| CDS-3UTR TCA 90 bp | TTCAGCAACCTTATTCTTGCAAACACCACACTACCCAGCTCAAACACAATCCTTCCACTTTCAGAGAACTaGTCCCTTTTTCGAAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: FSNLILANTTLPSSNTILPLSEN*SLFRSC Trigger: ACAGCTTCGAAAAAGGGATCAGTTCTCTGAAAGTGG...AAGGATTGTGTTTGAGCTGGGTAGTGTGGTGTTTGCAAGAATAAGGTTGCTGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 |
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| CDS-3UTR TCA 90 bp | CACTGTACAAAATATCACAGATTTCAGCAACCTTATTCTTGCAAACACCACACTTCCAAACTCCAGACTTaGGCAGCTGAAACCACTCCT | + |
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Preference number: 4 (lower is better) Translates to: HCTKYHRFQQPYSCKHHTSKLQT*AAETTP Trigger: AGGAGTGGTTTCAGCTGCTCAAGTCTGGAGTTTGGA...AGTGTGGTGTTTGCAAGAATAAGGTTGCTGAAATCTGTGATATTTTGTACAGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178945.8 |
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| CDS-3UTR GCA 90 bp | AAAGTTGCCTACAATAAGCTGCACACTGTACAAAATATCACAGATTTCAGCAACTCTGTTTTGAGAGCCTaGTCCCTCTTCTCCACTGTG | + |
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Preference number: 4 (lower is better) Translates to: KVAYNKLHTVQNITDFSNSVLRA*SLFSTV Trigger: CACAGTGGAGAAGAGGGAGCAGGCTCTCAAAACAGA...GTTGCTGAAATCTGTGATATTTTGTACAGTGTGCAGCTTATTGTAGGCAACTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000153959.2 ENSMUST00000178945.8 |
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| CDS-3UTR GCA 90 bp | CCTACAATAAGCTGCACACTGTACAAAATATCACAGATTTCAGCAACCTTATTCTCTGTTTTGAGAGCCTaGTCCCTCTTCTCCACTGTG | + |
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Preference number: 4 (lower is better) Translates to: PTISCTLYKISQISATLFSVLRA*SLFSTV Trigger: CACAGTGGAGAAGAGGGAGCAGGCTCTCAAAACAGA...GAATAAGGTTGCTGAAATCTGTGATATTTTGTACAGTGTGCAGCTTATTGTAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000153959.2 ENSMUST00000178945.8 |
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| CDS-3UTR GCA 90 bp | TATCACAGATTTCAGCAACCTTATTCTTGCAAACACCACACTACCCAGCTCAAATCCTTCCTCAGCTGTTaGACATGGTCGGTTAAATCA | + |
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Preference number: 4 (lower is better) Translates to: YHRFQQPYSCKHHTTQLKSFLSC*TWSVKS Trigger: TGATTTAACCGACCATGTGCAACAGCTGAGGAAGGA...TTTGAGCTGGGTAGTGTGGTGTTTGCAAGAATAAGGTTGCTGAAATCTGTGATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000153959.2 |
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| CDS-3UTR CCA 90 bp | AAAGTTGCCTACAATAAGCTGCACACTGTACAAAATATCACAGATTTCAGCAACTGGTGTTGTCTAAAGTaGCTCTCAGGGTGCCTAGGT | + |
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Preference number: 4 (lower is better) Translates to: KVAYNKLHTVQNITDFSNWCCLK*LSGCLG Trigger: ACCTAGGCACCCTGAGAGCCACTTTAGACAACACCA...GTTGCTGAAATCTGTGATATTTTGTACAGTGTGCAGCTTATTGTAGGCAACTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000178945.8 |
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| CDS-3UTR TCA 90 bp | ACAAAATATCACAGATTTCAGCAACCTTATTCTTGCAAACACCACACTACCCAGCCACTTTCAGAGAACTaGTCCCTTTTTCGAAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: TKYHRFQQPYSCKHHTTQPLSEN*SLFRSC Trigger: ACAGCTTCGAAAAAGGGATCAGTTCTCTGAAAGTGG...CTGGGTAGTGTGGTGTTTGCAAGAATAAGGTTGCTGAAATCTGTGATATTTTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000178945.8 |
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| CDS-3UTR GCA 90 bp | CATTCAAAAGTTGCCTACAATAAGCTGCACACTGTACAAAATATCACAGATTTCTCTGTTTTGAGAGCCTaGTCCCTCTTCTCCACTGTG | + |
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Preference number: 4 (lower is better) Translates to: HSKVAYNKLHTVQNITDFSVLRA*SLFSTV Trigger: CACAGTGGAGAAGAGGGAGCAGGCTCTCAAAACAGA...GAAATCTGTGATATTTTGTACAGTGTGCAGCTTATTGTAGGCAACTTTTGAATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000153959.2 ENSMUST00000178945.8 |
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| CDS-3UTR GCA 90 bp | CAAAATATCACAGATTTCAGCAACCTTATTCTTGCAAACACCACACTACCCAGCACAATCCTTTCTCCTTaGCTTAAAATTCTTGGGGCG | + |
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Preference number: 4 (lower is better) Translates to: QNITDFSNLILANTTLPSTILSP*LKILGA Trigger: CGCCCCAAGAATTTTAAGGCAAGGAGAAAGGATTGT...GCTGGGTAGTGTGGTGTTTGCAAGAATAAGGTTGCTGAAATCTGTGATATTTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000178945.8 |
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| CDS-3UTR TCA 90 bp | TACAAAATATCACAGATTTCAGCAACCTTATTCTTGCAAACACCACACTACCCACCACTTTCAGAGAACTaGTCCCTTTTTCGAAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: YKISQISATLFLQTPHYPPLSEN*SLFRSC Trigger: ACAGCTTCGAAAAAGGGATCAGTTCTCTGAAAGTGG...TGGGTAGTGTGGTGTTTGCAAGAATAAGGTTGCTGAAATCTGTGATATTTTGTA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000178945.8 |
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| 3UTR CAA 72 bp | CTGTACAAAATATCACAGATTTCAGCAACCTTATTCTaGCAAACACCACACTACCCAGCTCAAACACAATCC | + |
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Preference number: 4 (lower is better) Translates to: LYKISQISATLF*QTPHYPAQTQS Trigger: GGATTGTGTTTGAGCTGGGTAGTGTGGTGTTTGCAAGAATAAGGTTGCTGAAATCTGTGATATTTTGTACAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000153959.2 |
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| CDS GCA 90 bp | CAGCTTCAGGCCACGACTTCTCAGACTCAGAGAACCAATAGCAGCTaGCTTCATGCTCCGTCCAGTGAAGCGGGCAGCAGGCCACTTCCG | + |
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Preference number: 5 (lower is better) Translates to: QLQATTSQTQRTNSS*LHAPSSEAGSRPLP Trigger: CGGAAGTGGCCTGCTGCCCGCTTCACTGGACGGAGCATGAAGGCAGCTGCTATTGGTTCTCTGAGTCTGAGAAGTCGTGGCCTGAAGCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000144935.9 ENSMUST00000153959.2 ENSMUST00000178945.8 |
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| CDS CCA 90 bp | CCTTTCTCAAAGTCGGTCCCATCCACCCATCGCCAGGGCCCGTTTTaGTCCGTTAGGCCGATCCAACTAACCACATTGGCTAAGCGATTC | + |
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Preference number: 5 (lower is better) Translates to: PFSKSVPSTHRQGPF*SVRPIQLTTLAKRF Trigger: GAATCGCTTAGCCAATGTGGTTAGTTGGATCGGCCTAACGGACCAAAACGGGCCCTGGCGATGGGTGGATGGGACCGACTTTGAGAAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000144935.9 ENSMUST00000178945.8 |
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| CDS CCA 90 bp | AACAGGAGGAGGTGGGTCCAAGAGAGGATGCGCCACAGGAAGGACTaGGAAGGAGCTTTACCAGGCTCTTGGGTTTTCTCCTCGATCCTT | + |
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Preference number: 5 (lower is better) Translates to: NRRRWVQERMRHRKD*EGALPGSWVFSSIL Trigger: AAGGATCGAGGAGAAAACCCAAGAGCCTGGTAAAGCTCCTTCCCAGTCCTTCCTGTGGCGCATCCTCTCTTGGACCCACCTCCTCCTGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102571.10 ENSMUST00000178567.3 |
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| CDS CCA 90 bp | CAGCCCTGGAGTCCAGGGACTGGAATTCAGCCTTTATCTTGGAGGTaGTGTTGTCTAAAGTGGCTCTCAGGGTGCCTAGGTCCCTCCTTA | + |
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Preference number: 5 (lower is better) Translates to: QPWSPGTGIQPLSWR*CCLKWLSGCLGPSL Trigger: TAAGGAGGGACCTAGGCACCCTGAGAGCCACTTTAGACAACACCACCTCCAAGATAAAGGCTGAATTCCAGTCCCTGGACTCCAGGGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000144935.9 ENSMUST00000178945.8 |
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| CDS TCA 90 bp | TTCTGTAGAAAATTCTGCTCCTCCAGGGAGTTGACCACCACCAGGTaGGAATTCTCCAGCCGGCAGTACTTGTCAGCTTCAGGCCACGAC | + |
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Preference number: 5 (lower is better) Translates to: FCRKFCSSRELTTTR*EFSSRQYLSASGHD Trigger: GTCGTGGCCTGAAGCTGACAAGTACTGCCGGCTGGAGAATTCTCACCTGGTGGTGGTCAACTCCCTGGAGGAGCAGAATTTTCTACAGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000144935.9 ENSMUST00000178945.8 |
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| CDS GCA 90 bp | TTGGCCAGCTGGCACGTCAGGGCCTTCAAGTCCTTCCTCAGCTGTTaGACATGGTCGGTTAAATCAGACAGATCTGTTTTGAGAGCCTGC | + |
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Preference number: 5 (lower is better) Translates to: LASWHVRAFKSFLSC*TWSVKSDRSVLRAC Trigger: GCAGGCTCTCAAAACAGATCTGTCTGATTTAACCGACCATGTGCAACAGCTGAGGAAGGACTTGAAGGCCCTGACGTGCCAGCTGGCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000144935.9 ENSMUST00000153959.2 ENSMUST00000178945.8 |
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| CDS CCA 90 bp | AGCTGGCACGTCAGGGCCTTCAAGTCCTTCCTCAGCTGTTGCACATaGTCGGTTAAATCAGACAGATCTGTTTTGAGAGCCTGCTCCCTC | + |
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Preference number: 5 (lower is better) Translates to: SWHVRAFKSFLSCCT*SVKSDRSVLRACSL Trigger: GAGGGAGCAGGCTCTCAAAACAGATCTGTCTGATTTAACCGACCATGTGCAACAGCTGAGGAAGGACTTGAAGGCCCTGACGTGCCAGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000144935.9 ENSMUST00000153959.2 ENSMUST00000178945.8 |
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| CDS TCA 90 bp | TCCTCAGCTGTTGCACATGGTCGGTTAAATCAGACAGATCTGTTTTaGGAGCCTGCTCCCTCTTCTCCACTGTGCTCTCCAGAGAAGTCA | + |
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Preference number: 5 (lower is better) Translates to: SSAVAHGRLNQTDLF*EPAPSSPLCSPEKS Trigger: TGACTTCTCTGGAGAGCACAGTGGAGAAGAGGGAGCAGGCTCTCAAAACAGATCTGTCTGATTTAACCGACCATGTGCAACAGCTGAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000144935.9 ENSMUST00000178945.8 |
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| CDS GCA 90 bp | TGTTGCACATGGTCGGTTAAATCAGACAGATCTGTTTTGAGAGCCTaGTCCCTCTTCTCCACTGTGCTCTCCAGAGAAGTCACCTTCTGG | + |
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Preference number: 5 (lower is better) Translates to: CCTWSVKSDRSVLRA*SLFSTVLSREVTFW Trigger: CCAGAAGGTGACTTCTCTGGAGAGCACAGTGGAGAAGAGGGAGCAGGCTCTCAAAACAGATCTGTCTGATTTAACCGACCATGTGCAACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000144935.9 ENSMUST00000178945.8 |
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| CDS CCA 90 bp | GAACTGATCCCTTTTTCGAAGCTGTCAGCCCTGGAGTCCAGGGACTaGAATTCAGCCTTTATCTTGGAGGTGGTGTTGTCTAAAGTGGCT | + |
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Preference number: 5 (lower is better) Translates to: ELIPFSKLSALESRD*NSAFILEVVLSKVA Trigger: AGCCACTTTAGACAACACCACCTCCAAGATAAAGGCTGAATTCCAGTCCCTGGACTCCAGGGCTGACAGCTTCGAAAAAGGGATCAGTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000144935.9 ENSMUST00000178945.8 |
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| CDS-3UTR CAA 90 bp | TTTCAGCAACCTTATTCTTGCAAACACCACACTACCCAGCTCAAACACAATCCTTCCAGCCGGCAGTACTaGTCAGCTTCAGGCCACGAC | + |
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Preference number: 5 (lower is better) Translates to: FQQPYSCKHHTTQLKHNPSSRQY*SASGHD Trigger: GTCGTGGCCTGAAGCTGACAAGTACTGCCGGCTGGA...AGGATTGTGTTTGAGCTGGGTAGTGTGGTGTTTGCAAGAATAAGGTTGCTGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000153959.2 |
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| CDS-3UTR CAA 90 bp | CAGATTTCAGCAACCTTATTCTTGCAAACACCACACTACCCAGCTCAAACACAATCCAGCCGGCAGTACTaGTCAGCTTCAGGCCACGAC | + |
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Preference number: 5 (lower is better) Translates to: QISATLFLQTPHYPAQTQSSRQY*SASGHD Trigger: GTCGTGGCCTGAAGCTGACAAGTACTGCCGGCTGGA...TTGTGTTTGAGCTGGGTAGTGTGGTGTTTGCAAGAATAAGGTTGCTGAAATCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000153959.2 |
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| CDS-3UTR CAA 90 bp | GTACAAAATATCACAGATTTCAGCAACCTTATTCTTGCAAACACCACACTACCCTCCAGCCGGCAGTACTaGTCAGCTTCAGGCCACGAC | + |
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Preference number: 5 (lower is better) Translates to: VQNITDFSNLILANTTLPSSRQY*SASGHD Trigger: GTCGTGGCCTGAAGCTGACAAGTACTGCCGGCTGGA...GGGTAGTGTGGTGTTTGCAAGAATAAGGTTGCTGAAATCTGTGATATTTTGTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000153959.2 ENSMUST00000178945.8 |
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| CDS-3UTR CAA 90 bp | CACTGTACAAAATATCACAGATTTCAGCAACCTTATTCTTGCAAACACCACACTTCCAGCCGGCAGTACTaGTCAGCTTCAGGCCACGAC | + |
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Preference number: 5 (lower is better) Translates to: HCTKYHRFQQPYSCKHHTSSRQY*SASGHD Trigger: GTCGTGGCCTGAAGCTGACAAGTACTGCCGGCTGGA...AGTGTGGTGTTTGCAAGAATAAGGTTGCTGAAATCTGTGATATTTTGTACAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000153959.2 ENSMUST00000178945.8 |
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| CDS CCA 72 bp | GCCACTTCCGAGCCGTTGTTCTTGAGGTTGGCCAGCTaGCACGTCAGGGCCTTCAAGTCCTTCCTCAGCTGT | + |
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Preference number: 6 (lower is better) Translates to: ATSEPLFLRLAS*HVRAFKSFLSC Trigger: ACAGCTGAGGAAGGACTTGAAGGCCCTGACGTGCCAGCTGGCCAACCTCAAGAACAACGGCTCGGAAGTGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000144935.9 ENSMUST00000153959.2 ENSMUST00000178945.8 |
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| CDS CCA 72 bp | AAGTCGGTCCCATCCACCCATCGCCAGGGCCCGTTTTaGTCCGTTAGGCCGATCCAACTAACCACATTGGCT | + |
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Preference number: 6 (lower is better) Translates to: KSVPSTHRQGPF*SVRPIQLTTLA Trigger: AGCCAATGTGGTTAGTTGGATCGGCCTAACGGACCAAAACGGGCCCTGGCGATGGGTGGATGGGACCGACTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000144935.9 ENSMUST00000178945.8 |
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| CDS CCA 72 bp | CTCACCTCCTCCCAGTCCGTGTCCGAACCAGTTATCTaGCTGCAGTGGGGCCCAGTTCTTAAAGCCTTTCTC | + |
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Preference number: 6 (lower is better) Translates to: LTSSQSVSEPVI*LQWGPVLKAFL Trigger: GAGAAAGGCTTTAAGAACTGGGCCCCACTGCAGCCAGATAACTGGTTCGGACACGGACTGGGAGGAGGTGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 |
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| CDS CCA 72 bp | AGGTGGGTCCAAGAGAGGATGCGCCACAGGAAGGACTaGGAAGGAGCTTTACCAGGCTCTTGGGTTTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: RWVQERMRHRKD*EGALPGSWVFS Trigger: GGAGAAAACCCAAGAGCCTGGTAAAGCTCCTTCCCAGTCCTTCCTGTGGCGCATCCTCTCTTGGACCCACCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102571.10 ENSMUST00000178567.3 |
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| CDS TCA 72 bp | TGGCTCAAGTCTCGGCCTGCCTGCAGTTCCTGCCTGTaGTCCTCCACATCCACTTTCAGAGAACTGATCCCT | + |
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Preference number: 6 (lower is better) Translates to: WLKSRPACSSCL*SSTSTFRELIP Trigger: AGGGATCAGTTCTCTGAAAGTGGATGTGGAGGATCACAGGCAGGAACTGCAGGCAGGCCGAGACTTGAGCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000144935.9 ENSMUST00000178945.8 |
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| CDS TCA 72 bp | CGGGTAGGAGGATTCCAAACTCCAGACTTGAGCAGCTaGAACCACTCCTCCCAGTCCGTGTCCGAACCAGTT | + |
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Preference number: 6 (lower is better) Translates to: RVGGFQTPDLSS*NHSSQSVSEPV Trigger: AACTGGTTCGGACACGGACTGGGAGGAGTGGTTTCAGCTGCTCAAGTCTGGAGTTTGGAATCCTCCTACCCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178945.8 |
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| CDS GCA 72 bp | CCTCCTCCCAGTCCGTGTCCGAACCAGTTATCTGGCTaGAGTGGGGCCCAGTTCTTAAAGCCTTTCTCAAAG | + |
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Preference number: 6 (lower is better) Translates to: PPPSPCPNQLSG*SGAQFLKPFSK Trigger: CTTTGAGAAAGGCTTTAAGAACTGGGCCCCACTGCAGCCAGATAACTGGTTCGGACACGGACTGGGAGGAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 |
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| CDS CCA 72 bp | AACCACTCCTCCCAGTCCGTGTCCGAACCAGTTATCTaGCTGCAGTGGGGCCCAGTTCTTAAAGCCTTTCTC | + |
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Preference number: 6 (lower is better) Translates to: NHSSQSVSEPVI*LQWGPVLKAFL Trigger: GAGAAAGGCTTTAAGAACTGGGCCCCACTGCAGCCAGATAACTGGTTCGGACACGGACTGGGAGGAGTGGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178945.8 |
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| CDS GCA 72 bp | ACTCCTCCCAGTCCGTGTCCGAACCAGTTATCTGGCTaGAGTGGGGCCCAGTTCTTAAAGCCTTTCTCAAAG | + |
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Preference number: 6 (lower is better) Translates to: TPPSPCPNQLSG*SGAQFLKPFSK Trigger: CTTTGAGAAAGGCTTTAAGAACTGGGCCCCACTGCAGCCAGATAACTGGTTCGGACACGGACTGGGAGGAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178945.8 |
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| CDS CCA 72 bp | TCCCAGTCCGTGTCCGAACCAGTTATCTGGCTGCAGTaGGGCCCAGTTCTTAAAGCCTTTCTCAAAGTCGGT | + |
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Preference number: 6 (lower is better) Translates to: SQSVSEPVIWLQ*GPVLKAFLKVG Trigger: ACCGACTTTGAGAAAGGCTTTAAGAACTGGGCCCCACTGCAGCCAGATAACTGGTTCGGACACGGACTGGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000178945.8 |
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| CDS CAA 72 bp | GCCCTGGAGTCCAGGGACTGGAATTCAGCCTTTATCTaGGAGGTGGTGTTGTCTAAAGTGGCTCTCAGGGTG | + |
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Preference number: 6 (lower is better) Translates to: ALESRDWNSAFI*EVVLSKVALRV Trigger: CACCCTGAGAGCCACTTTAGACAACACCACCTCCAAGATAAAGGCTGAATTCCAGTCCCTGGACTCCAGGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000144935.9 ENSMUST00000178945.8 |
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| CDS CAA 90 bp | CGCCAGGGCCCGTTTTGGTCCGTTAGGCCGATCCAACTAACCACATaGGCTAAGCGATTCTGTAGAAAATTCTGCTCCTCCAGGGAGTTG | + |
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Preference number: 6 (lower is better) Translates to: RQGPFWSVRPIQLTT*AKRFCRKFCSSREL Trigger: CAACTCCCTGGAGGAGCAGAATTTTCTACAGAATCGCTTAGCCAATGTGGTTAGTTGGATCGGCCTAACGGACCAAAACGGGCCCTGGCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000144935.9 ENSMUST00000178945.8 |
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| CDS TCA 72 bp | CCTGCCTGTGATCCTCCACATCCACTTTCAGAGAACTaGTCCCTTTTTCGAAGCTGTCAGCCCTGGAGTCCA | + |
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Preference number: 6 (lower is better) Translates to: PACDPPHPLSEN*SLFRSCQPWSP Trigger: TGGACTCCAGGGCTGACAGCTTCGAAAAAGGGATCAGTTCTCTGAAAGTGGATGTGGAGGATCACAGGCAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000144935.9 ENSMUST00000178945.8 |
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| CDS GCA 72 bp | TCTTGGAGGTGGTGTTGTCTAAAGTGGCTCTCAGGGTaGCTAGGTCCCTCCTTAACTGGGAATTTTGGGATC | + |
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Preference number: 6 (lower is better) Translates to: SWRWCCLKWLSG*LGPSLTGNFGI Trigger: GATCCCAAAATTCCCAGTTAAGGAGGGACCTAGGCACCCTGAGAGCCACTTTAGACAACACCACCTCCAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000178945.8 |
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| CDS GCA 72 bp | TCTTGGAGGTGGTGTTGTCTAAAGTGGCTCTCAGGGTaGCTAGGTCCCTCCTTAACTGGGAATCTTTACCAG | + |
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Preference number: 6 (lower is better) Translates to: SWRWCCLKWLSG*LGPSLTGNLYQ Trigger: CTGGTAAAGATTCCCAGTTAAGGAGGGACCTAGGCACCCTGAGAGCCACTTTAGACAACACCACCTCCAAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144935.9 |
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| CDS CCA 72 bp | AGGAAGGACTGGGAAGGAGCTGCTTTACCAGGCTCTTaGGTTTTCTCCTCGATCCTTGAGTTCTGGAGGTTT | + |
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Preference number: 6 (lower is better) Translates to: RKDWEGAALPGS*VFSSILEFWRF Trigger: AAACCTCCAGAACTCAAGGATCGAGGAGAAAACCCAAGAGCCTGGTAAAGCAGCTCCTTCCCAGTCCTTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000327.13 ENSMUST00000178945.8 |
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| CDS CCA 72 bp | AGTCCAGGGACTGGAATTCAGCCTTTATCTTGGAGGTaGTGTTGTCTAAAGTGGCTCTCAGGGTGCCTAGGT | + |
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Preference number: 6 (lower is better) Translates to: SPGTGIQPLSWR*CCLKWLSGCLG Trigger: ACCTAGGCACCCTGAGAGCCACTTTAGACAACACCACCTCCAAGATAAAGGCTGAATTCCAGTCCCTGGACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000144935.9 ENSMUST00000178945.8 |
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| CDS CAA 90 bp | TTCCTCAGCTGTTGCACATGGTCGGTTAAATCAGACAGATCTGTTTaGAGAGCCTGCTCCCTCTTCTCCACTGTGCTCTCCAGAGAAGTC | + |
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Preference number: 6 (lower is better) Translates to: FLSCCTWSVKSDRSV*RACSLFSTVLSREV Trigger: GACTTCTCTGGAGAGCACAGTGGAGAAGAGGGAGCAGGCTCTCAAAACAGATCTGTCTGATTTAACCGACCATGTGCAACAGCTGAGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000144935.9 ENSMUST00000178945.8 |
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| CDS GCA 72 bp | TGGTCGGTTAAATCAGACAGATCTGTTTTGAGAGCCTaGTCCCTCTTCTCCACTGTGCTCTCCAGAGAAGTC | + |
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Preference number: 6 (lower is better) Translates to: WSVKSDRSVLRA*SLFSTVLSREV Trigger: GACTTCTCTGGAGAGCACAGTGGAGAAGAGGGAGCAGGCTCTCAAAACAGATCTGTCTGATTTAACCGACCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000144935.9 ENSMUST00000178945.8 |
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| CDS GCA 72 bp | TGGCACGTCAGGGCCTTCAAGTCCTTCCTCAGCTGTTaGACATGGTCGGTTAAATCAGACAGATCTGTTTTG | + |
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Preference number: 6 (lower is better) Translates to: WHVRAFKSFLSC*TWSVKSDRSVL Trigger: CAAAACAGATCTGTCTGATTTAACCGACCATGTGCAACAGCTGAGGAAGGACTTGAAGGCCCTGACGTGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000144935.9 ENSMUST00000153959.2 ENSMUST00000178945.8 |
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| CDS CCA 72 bp | GTCAGGGCCTTCAAGTCCTTCCTCAGCTGTTGCACATaGTCGGTTAAATCAGACAGATCTGTTTTGAGAGCC | + |
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Preference number: 6 (lower is better) Translates to: VRAFKSFLSCCT*SVKSDRSVLRA Trigger: GGCTCTCAAAACAGATCTGTCTGATTTAACCGACCATGTGCAACAGCTGAGGAAGGACTTGAAGGCCCTGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000144935.9 ENSMUST00000153959.2 ENSMUST00000178945.8 |
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| CDS CAA 72 bp | TGTTGCACATGGTCGGTTAAATCAGACAGATCTGTTTaGAGAGCCTGCTCCCTCTTCTCCACTGTGCTCTCC | + |
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Preference number: 6 (lower is better) Translates to: CCTWSVKSDRSV*RACSLFSTVLS Trigger: GGAGAGCACAGTGGAGAAGAGGGAGCAGGCTCTCAAAACAGATCTGTCTGATTTAACCGACCATGTGCAACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000144935.9 ENSMUST00000153959.2 ENSMUST00000178945.8 |
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| CDS CCA 72 bp | AGGTCCCTCCTTAACTGGGAATCTTTACCAGGCTCTTaGGTTTTCTCCTCGATCCTTGAGTTCTGGAGGTTT | + |
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Preference number: 6 (lower is better) Translates to: RSLLNWESLPGS*VFSSILEFWRF Trigger: AAACCTCCAGAACTCAAGGATCGAGGAGAAAACCCAAGAGCCTGGTAAAGATTCCCAGTTAAGGAGGGACCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000144935.9 ENSMUST00000152635.2 |
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| CDS CAA 72 bp | CCGTTTTGGTCCGTTAGGCCGATCCAACTAACCACATaGGCTAAGCGATTCTGTAGAAAATTCTGCTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: PFWSVRPIQLTT*AKRFCRKFCSS Trigger: GGAGGAGCAGAATTTTCTACAGAATCGCTTAGCCAATGTGGTTAGTTGGATCGGCCTAACGGACCAAAACGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000000327.13 ENSMUST00000102571.10 ENSMUST00000144935.9 ENSMUST00000178945.8 |
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