Pregenerated sensors for CLDND2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038973Ensembl transcript IDs: ENSMUST00000040227.3, ENSMUST00000206839.2
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CCATGCACGCTGCGGACACTGCCACGGTGTTCTGGCAGGGGATGTTaGAGCATTTGCCATGGGTACACTCCTGCCATAGGCCACTGTGCC | + |
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Preference number: 5 (lower is better) Translates to: PCTLRTLPRCSGRGC*SICHGYTPAIGHCA Trigger: GGCACAGTGGCCTATGGCAGGAGTGTACCCATGGCAAATGCTCCAACATCCCCTGCCAGAACACCGTGGCAGTGTCCGCAGCGTGCATGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040227.3 ENSMUST00000206839.2 |
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| CDS GCA 90 bp | TACAATACTGAAGGTTGCTGCCAACACCATGCACGCTGCGGACACTaGCACGGTGTTCTGGCAGGGGATGTTGGAGCATTTGCCATGGGT | + |
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Preference number: 5 (lower is better) Translates to: YNTEGCCQHHARCGH*HGVLAGDVGAFAMG Trigger: ACCCATGGCAAATGCTCCAACATCCCCTGCCAGAACACCGTGGCAGTGTCCGCAGCGTGCATGGTGTTGGCAGCAACCTTCAGTATTGTA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040227.3 ENSMUST00000206839.2 |
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| CDS TCA 90 bp | AAAGTAGGACCAGGAGAAGAAGACTTCTGGCTTCCAGGCATTCTTTaGAGTGTATACGGCCAAGGCAATCAGCAGCAGCAACCCGCTGAG | + |
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Preference number: 5 (lower is better) Translates to: KVGPGEEDFWLPGIL*SVYGQGNQQQQPAE Trigger: CTCAGCGGGTTGCTGCTGCTGATTGCCTTGGCCGTATACACTTCAAAGAATGCCTGGAAGCCAGAAGTCTTCTTCTCCTGGTCCTACTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040227.3 ENSMUST00000206839.2 |
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| CDS GCA 72 bp | CTGCCACGGTGTTCTGGCAGGGGATGTTGGAGCATTTaGCATGGGTACACTCCTGCCATAGGCCACTGTGCC | + |
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Preference number: 6 (lower is better) Translates to: LPRCSGRGCWSI*HGYTPAIGHCA Trigger: GGCACAGTGGCCTATGGCAGGAGTGTACCCATGGCAAATGCTCCAACATCCCCTGCCAGAACACCGTGGCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040227.3 ENSMUST00000206839.2 |
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| CDS CCA 72 bp | CTGCGGACACTGCCACGGTGTTCTGGCAGGGGATGTTaGAGCATTTGCCATGGGTACACTCCTGCCATAGGC | + |
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Preference number: 6 (lower is better) Translates to: LRTLPRCSGRGC*SICHGYTPAIG Trigger: GCCTATGGCAGGAGTGTACCCATGGCAAATGCTCCAACATCCCCTGCCAGAACACCGTGGCAGTGTCCGCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040227.3 ENSMUST00000206839.2 |
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| CDS CCA 72 bp | AACACCATGCACGCTGCGGACACTGCCACGGTGTTCTaGCAGGGGATGTTGGAGCATTTGCCATGGGTACAC | + |
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Preference number: 6 (lower is better) Translates to: NTMHAADTATVF*QGMLEHLPWVH Trigger: GTGTACCCATGGCAAATGCTCCAACATCCCCTGCCAGAACACCGTGGCAGTGTCCGCAGCGTGCATGGTGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040227.3 ENSMUST00000206839.2 |
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| CDS CAA 72 bp | ACTGCCACGGTGTTCTGGCAGGGGATGTTGGAGCATTaGCCATGGGTACACTCCTGCCATAGGCCACTGTGC | + |
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Preference number: 6 (lower is better) Translates to: TATVFWQGMLEH*PWVHSCHRPLC Trigger: GCACAGTGGCCTATGGCAGGAGTGTACCCATGGCAAATGCTCCAACATCCCCTGCCAGAACACCGTGGCAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040227.3 ENSMUST00000206839.2 |
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| CDS GCA 72 bp | AGGCATACCGGGAATCCGCTGATGGCTTCGGTGCTCTaGAAGATCATGTCGGCAAGCAGAAAGCAGAAGCCC | + |
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Preference number: 6 (lower is better) Translates to: RHTGNPLMASVL*KIMSASRKQKP Trigger: GGGCTTCTGCTTTCTGCTTGCCGACATGATCTTGCAGAGCACCGAAGCCATCAGCGGATTCCCGGTATGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040227.3 ENSMUST00000206839.2 |
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| CDS TCA 72 bp | ACTGAATCCTTATCCCGATCCCCAAAGCTACAATACTaGAGGTTGCTGCCAACACCATGCACGCTGCGGACA | + |
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Preference number: 6 (lower is better) Translates to: TESLSRSPKLQY*RLLPTPCTLRT Trigger: TGTCCGCAGCGTGCATGGTGTTGGCAGCAACCTTCAGTATTGTAGCTTTGGGGATCGGGATAAGGATTCAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040227.3 ENSMUST00000206839.2 |
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| CDS TCA 72 bp | CCAGGAGAAGAAGACTTCTGGCTTCCAGGCATTCTTTaGAGTGTATACGGCCAAGGCAATCAGCAGCAGCAA | + |
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Preference number: 6 (lower is better) Translates to: PGEEDFWLPGIL*SVYGQGNQQQQ Trigger: TTGCTGCTGCTGATTGCCTTGGCCGTATACACTTCAAAGAATGCCTGGAAGCCAGAAGTCTTCTTCTCCTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040227.3 ENSMUST00000206839.2 |
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| CDS CAA 72 bp | ACCAGGAGAAGAAGACTTCTGGCTTCCAGGCATTCTTaGAAGTGTATACGGCCAAGGCAATCAGCAGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: TRRRRLLASRHS*KCIRPRQSAAA Trigger: TGCTGCTGCTGATTGCCTTGGCCGTATACACTTCAAAGAATGCCTGGAAGCCAGAAGTCTTCTTCTCCTGGT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040227.3 ENSMUST00000206839.2 |
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