Pregenerated sensors for CLDND1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022744Ensembl transcript IDs: ENSMUST00000023426.12, ENSMUST00000159944.8, ENSMUST00000162057.8, ENSMUST00000162191.2
Found 72 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CGGAGCCCAGTGTGCACAGACCTGCAAGGAGATGGAGAATGCCAGTaGCGAGGGTGGGATACAGGCTGCGGCAGATACAGGCACAGAGGC | + |
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Preference number: 1 (lower is better) Translates to: RSPVCTDLQGDGECQ*RGWDTGCGRYRHRG Trigger: GCCTCTGTGCCTGTATCTGCCGCAGCCTGTATCCCACCCTCGCCACTGGCATTCTCCATCTCCTTGCAGGTCTGTGCACACTGGGCTCCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159944.8 |
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| 3UTR GCA 90 bp | CTGCAAGGAGATGGAGAATGCCAGTGGCGAGGGTGGGATACAGGCTaGGGCAGATACAGGCACAGAGGCCAATCAACGCCCCAAAGCACA | + |
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Preference number: 1 (lower is better) Translates to: LQGDGECQWRGWDTG*GRYRHRGQSTPQST Trigger: TGTGCTTTGGGGCGTTGATTGGCCTCTGTGCCTGTATCTGCCGCAGCCTGTATCCCACCCTCGCCACTGGCATTCTCCATCTCCTTGCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159944.8 |
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| 3UTR CCA 90 bp | GTGTGCACAGACCTGCAAGGAGATGGAGAATGCCAGTGGCGAGGGTaGGATACAGGCTGCGGCAGATACAGGCACAGAGGCCAATCAACG | + |
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Preference number: 1 (lower is better) Translates to: VCTDLQGDGECQWRG*DTGCGRYRHRGQST Trigger: CGTTGATTGGCCTCTGTGCCTGTATCTGCCGCAGCCTGTATCCCACCCTCGCCACTGGCATTCTCCATCTCCTTGCAGGTCTGTGCACAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159944.8 |
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| 3UTR TCA 90 bp | AGGCACAGAGGCCAATCAACGCCCCAAAGCACATCAAGCCCAAGCTaGCGAAGGGTAAAAGGAACTGGCAGCGCCACAGGTAGGTGCGAA | + |
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Preference number: 1 (lower is better) Translates to: RHRGQSTPQSTSSPS*RRVKGTGSATGRCE Trigger: TTCGCACCTACCTGTGGCGCTGCCAGTTCCTTTTACCCTTCGTCAGCTTGGGCTTGATGTGCTTTGGGGCGTTGATTGGCCTCTGTGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159944.8 |
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| 3UTR GCA 90 bp | CAGATACATCCTTGGGCAGCTCTACTTTCTGATGTAAGAGTTCAATaGCGGCAACATAGCAACTCACGGAGCCCAGTGTGCACAGACCTG | + |
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Preference number: 1 (lower is better) Translates to: QIHPWAALLSDVRVQ*RQHSNSRSPVCTDL Trigger: CAGGTCTGTGCACACTGGGCTCCGTGAGTTGCTATGTTGCCGGCATTGAACTCTTACATCAGAAAGTAGAGCTGCCCAAGGATGTATCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159944.8 |
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| 3UTR CCA 90 bp | CGCAGGCCAGGCAGAAGGACCATCCAAATTCTCCAGATACATCCTTaGGCAGCTCTACTTTCTGATGTAAGAGTTCAATGCCGGCAACAT | + |
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Preference number: 1 (lower is better) Translates to: RRPGRRTIQILQIHP*AALLSDVRVQCRQH Trigger: ATGTTGCCGGCATTGAACTCTTACATCAGAAAGTAGAGCTGCCCAAGGATGTATCTGGAGAATTTGGATGGTCCTTCTGCCTGGCCTGCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159944.8 |
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| 3UTR TCA 90 bp | ATACAGAAATTCATTTCTAGTTTCATAGTTACTGCACTACTGGACTaGGCAGACGTTAGCAGACCCTGTTTTGGGTCAATTTGCCACTGC | + |
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Preference number: 1 (lower is better) Translates to: IQKFISSFIVTALLD*ADVSRPCFGSICHC Trigger: GCAGTGGCAAATTGACCCAAAACAGGGTCTGCTAACGTCTGCTCAGTCCAGTAGTGCAGTAACTATGAAACTAGAAATGAATTTCTGTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| 3UTR CCA 90 bp | AAGGAAAGGCACATCATTTCACCACAAGAAATAAAGACCCATAAATaGAGGTTAGTAGGTGGCAGCTACAGCTTTAGATCTTGTGGTGGT | + |
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Preference number: 1 (lower is better) Translates to: KERHIISPQEIKTHK*RLVGGSYSFRSCGG Trigger: ACCACCACAAGATCTAAAGCTGTAGCTGCCACCTACTAACCTCCATTTATGGGTCTTTATTTCTTGTGGTGAAATGATGTGCCTTTCCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023426.12 |
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| 3UTR-3UTR GCA 90 bp | GGAGATGGAGAATGCCAGTGGCGAGGGTGGGATACAGGCTGCGGCAGATACAGGTGCCGCTATTGTGGTTaGCGGGGTCCACATACTTCT | + |
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Preference number: 2 (lower is better) Translates to: GDGECQWRGWDTGCGRYRCRYCG*RGPHTS Trigger: AGAAGTATGTGGACCCCGGCAACCACAATAGCGGCA...CCTGTATCTGCCGCAGCCTGTATCCCACCCTCGCCACTGGCATTCTCCATCTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159944.8 |
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| 3UTR-3UTR GCA 90 bp | GAGACGCAGGCCAGGCAGAAGGACCATCCAAATTCTCCAGATACATCCTTGGGCTCACGGAGCCCAGTGTaGACAGACCTGCAAGGAGAT | + |
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Preference number: 2 (lower is better) Translates to: ETQARQKDHPNSPDTSLGSRSPV*TDLQGD Trigger: ATCTCCTTGCAGGTCTGTGCACACTGGGCTCCGTGA...GCCCAAGGATGTATCTGGAGAATTTGGATGGTCCTTCTGCCTGGCCTGCGTCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159944.8 |
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| 3UTR-3UTR CCA 90 bp | AGCCGAGACGCAGGCCAGGCAGAAGGACCATCCAAATTCTCCAGATACATCCTTGATGGAGAATGCCAGTaGCGAGGGTGGGATACAGGC | + |
|
Preference number: 2 (lower is better) Translates to: SRDAGQAEGPSKFSRYILDGECQ*RGWDTG Trigger: GCCTGTATCCCACCCTCGCCACTGGCATTCTCCATC...AAGGATGTATCTGGAGAATTTGGATGGTCCTTCTGCCTGGCCTGCGTCTCGGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159944.8 |
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| 3UTR-3UTR TCA 90 bp | TGGGATACAGGCTGCGGCAGATACAGGCACAGAGGCCAATCAACGCCCCAAAGCGGTAACCACATCAAATaGCTCTGGAACAAGAACAAT | + |
|
Preference number: 2 (lower is better) Translates to: WDTGCGRYRHRGQSTPQSGNHIK*LWNKNN Trigger: ATTGTTCTTGTTCCAGAGTCATTTGATGTGGTTACC...GCTTTGGGGCGTTGATTGGCCTCTGTGCCTGTATCTGCCGCAGCCTGTATCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159944.8 |
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| 3UTR CAA 90 bp | ACATACTTCTCCATGAACTGCTCGTTTAGTGTGAAACTCATGCATTaGGTAACCACATCAAATGACTCTGGAACAAGAACAATGACTGCT | + |
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Preference number: 2 (lower is better) Translates to: TYFSMNCSFSVKLMH*VTTSNDSGTRTMTA Trigger: AGCAGTCATTGTTCTTGTTCCAGAGTCATTTGATGTGGTTACCAAATGCATGAGTTTCACACTAAACGAGCAGTTCATGGAGAAGTATGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159944.8 |
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| 3UTR-3UTR TCA 90 bp | TACAAACTTGGGTCACATCTCTACAGTTCTTTCTGTCTGAACTCTGAACCTAGAAAAATTAAAGACGACTaGGAGGAAGACAAGGGAAAA | + |
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Preference number: 2 (lower is better) Translates to: YKLGSHLYSSFCLNSEPRKIKDD*EEDKGK Trigger: TTTTCCCTTGTCTTCCTCTCAGTCGTCTTTAATTTT...TCTAGGTTCAGAGTTCAGACAGAAAGAACTGTAGAGATGTGACCCAAGTTTGTA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| 3UTR-3UTR TCA 90 bp | CTGTTTTGGGTCAATTTGCCACTGCTAATATTCTTTTACAAACTTGGGTCACATACAGTTCTTTCTGTCTaGACTCTGAACCTAGATCAG | + |
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Preference number: 2 (lower is better) Translates to: LFWVNLPLLIFFYKLGSHTVLSV*TLNLDQ Trigger: CTGATCTAGGTTCAGAGTTCAGACAGAAAGAACTGT...ATGTGACCCAAGTTTGTAAAAGAATATTAGCAGTGGCAAATTGACCCAAAACAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| 3UTR-3UTR CCA 90 bp | ATAAAGACCCATAAATGGAGGTTAGTAGGTGGCAGCTACAGCTTTAGATCTTGTAGCAAAAATCCACAATaGTTTGGTGGCACTGAAAAT | + |
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Preference number: 2 (lower is better) Translates to: IKTHKWRLVGGSYSFRSCSKNPQ*FGGTEN Trigger: ATTTTCAGTGCCACCAAACCATTGTGGATTTTTGCT...ACAAGATCTAAAGCTGTAGCTGCCACCTACTAACCTCCATTTATGGGTCTTTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023426.12 |
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| 3UTR GCA 72 bp | GATGGAGAATGCCAGTGGCGAGGGTGGGATACAGGCTaGGGCAGATACAGGCACAGAGGCCAATCAACGCCC | + |
|
Preference number: 3 (lower is better) Translates to: DGECQWRGWDTG*GRYRHRGQSTP Trigger: GGGCGTTGATTGGCCTCTGTGCCTGTATCTGCCGCAGCCTGTATCCCACCCTCGCCACTGGCATTCTCCATC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159944.8 |
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| 3UTR CCA 72 bp | GACCTGCAAGGAGATGGAGAATGCCAGTGGCGAGGGTaGGATACAGGCTGCGGCAGATACAGGCACAGAGGC | + |
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Preference number: 3 (lower is better) Translates to: DLQGDGECQWRG*DTGCGRYRHRG Trigger: GCCTCTGTGCCTGTATCTGCCGCAGCCTGTATCCCACCCTCGCCACTGGCATTCTCCATCTCCTTGCAGGTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159944.8 |
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| 3UTR GCA 72 bp | ACTGGCAGCGCCACAGGTAGGTGCGAAGCAGGTCGATaGCGCTATTGTGGTTGCCGGGGTCCACATACTTCT | + |
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Preference number: 3 (lower is better) Translates to: TGSATGRCEAGR*RYCGCRGPHTS Trigger: AGAAGTATGTGGACCCCGGCAACCACAATAGCGGCATCGACCTGCTTCGCACCTACCTGTGGCGCTGCCAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159944.8 |
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| 3UTR GCA 72 bp | CGAAGGGTAAAAGGAACTGGCAGCGCCACAGGTAGGTaGGAAGCAGGTCGATGCCGCTATTGTGGTTGCCGG | + |
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Preference number: 3 (lower is better) Translates to: RRVKGTGSATGR*EAGRCRYCGCR Trigger: CCGGCAACCACAATAGCGGCATCGACCTGCTTCGCACCTACCTGTGGCGCTGCCAGTTCCTTTTACCCTTCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159944.8 |
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| 3UTR CCA 72 bp | GTGTGCACAGACCTGCAAGGAGATGGAGAATGCCAGTaGCGAGGGTGGGATACAGGCTGCGGCAGATACAGG | + |
|
Preference number: 3 (lower is better) Translates to: VCTDLQGDGECQ*RGWDTGCGRYR Trigger: CCTGTATCTGCCGCAGCCTGTATCCCACCCTCGCCACTGGCATTCTCCATCTCCTTGCAGGTCTGTGCACAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159944.8 |
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| 3UTR TCA 72 bp | GGCCAATCAACGCCCCAAAGCACATCAAGCCCAAGCTaGCGAAGGGTAAAAGGAACTGGCAGCGCCACAGGT | + |
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Preference number: 3 (lower is better) Translates to: GQSTPQSTSSPS*RRVKGTGSATG Trigger: ACCTGTGGCGCTGCCAGTTCCTTTTACCCTTCGTCAGCTTGGGCTTGATGTGCTTTGGGGCGTTGATTGGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159944.8 |
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| 3UTR-3UTR CAA 90 bp | GCCACAGGTAGGTGCGAAGCAGGTCGATGCCGCTATTGTGGTTGCCGGGGTCCAGTGAAACTCATGCATTaGGTAACCACATCAAATGAC | + |
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Preference number: 3 (lower is better) Translates to: ATGRCEAGRCRYCGCRGPVKLMH*VTTSND Trigger: GTCATTTGATGTGGTTACCAAATGCATGAGTTTCAC...TGGACCCCGGCAACCACAATAGCGGCATCGACCTGCTTCGCACCTACCTGTGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159944.8 |
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| 3UTR GCA 72 bp | CCTTGGGCAGCTCTACTTTCTGATGTAAGAGTTCAATaGCGGCAACATAGCAACTCACGGAGCCCAGTGTGC | + |
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Preference number: 3 (lower is better) Translates to: PWAALLSDVRVQ*RQHSNSRSPVC Trigger: GCACACTGGGCTCCGTGAGTTGCTATGTTGCCGGCATTGAACTCTTACATCAGAAAGTAGAGCTGCCCAAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159944.8 |
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| 3UTR TCA 72 bp | GACCTCCCATATAGTACTCAGCTAGAACAAAGAAGTTaGGGAATTGGCTGTGACTCTTCTCTCACTCTGTTA | + |
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Preference number: 3 (lower is better) Translates to: DLPYSTQLEQRS*GIGCDSSLTLL Trigger: TAACAGAGTGAGAGAAGAGTCACAGCCAATTCCTCAACTTCTTTGTTCTAGCTGAGTACTATATGGGAGGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023426.12 |
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| 3UTR TCA 72 bp | TACTCAGCTAGAACAAAGAAGTTGAGGAATTGGCTGTaGCTCTTCTCTCACTCTGTTAAAAAGAAAGTACTC | + |
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Preference number: 3 (lower is better) Translates to: YSARTKKLRNWL*LFSHSVKKKVL Trigger: GAGTACTTTCTTTTTAACAGAGTGAGAGAAGAGTCACAGCCAATTCCTCAACTTCTTTGTTCTAGCTGAGTA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023426.12 |
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| 3UTR CCA 72 bp | GGTCAATTTGCCACTGCTAATATTCTTTTACAAACTTaGGTCACATCTCTACAGTTCTTTCTGTCTGAACTC | + |
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Preference number: 3 (lower is better) Translates to: GQFATANILLQT*VTSLQFFLSEL Trigger: GAGTTCAGACAGAAAGAACTGTAGAGATGTGACCCAAGTTTGTAAAAGAATATTAGCAGTGGCAAATTGACC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| CDS-3UTR CCA 90 bp | GCACAGAGGCCAATCAACGCCCCAAAGCACATCAAGCCCAAGCTGACGAAGGGTAGAAGTCCGTGCCTATaGAGGCCGCCATGTAGATGG | + |
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Preference number: 4 (lower is better) Translates to: AQRPINAPKHIKPKLTKGRSPCL*RPPCRW Trigger: CCATCTACATGGCGGCCTCCATAGGCACGGACTTCT...ACCCTTCGTCAGCTTGGGCTTGATGTGCTTTGGGGCGTTGATTGGCCTCTGTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159944.8 |
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| CDS-3UTR TCA 90 bp | ATAGCAACTCACGGAGCCCAGTGTGCACAGACCTGCAAGGAGATGGAGAATGCCTGTTTTTGGGTATGGTaGTGCACCGTCTCCACAGCC | + |
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Preference number: 4 (lower is better) Translates to: IATHGAQCAQTCKEMENACFWVW*CTVSTA Trigger: GGCTGTGGAGACGGTGCATCACCATACCCAAAAACA...GGCATTCTCCATCTCCTTGCAGGTCTGTGCACACTGGGCTCCGTGAGTTGCTAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159944.8 |
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| CDS-3UTR TCA 90 bp | TGGGATACAGGCTGCGGCAGATACAGGCACAGAGGCCAATCAACGCCCCAAAGCTCACTTGAATTCTCTTaGATGGGACTTCGATACTCA | + |
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Preference number: 4 (lower is better) Translates to: WDTGCGRYRHRGQSTPQSSLEFS*MGLRYS Trigger: TGAGTATCGAAGTCCCATTCAAGAGAATTCAAGTGA...GCTTTGGGGCGTTGATTGGCCTCTGTGCCTGTATCTGCCGCAGCCTGTATCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159944.8 |
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| CDS-3UTR GCA 90 bp | TACAAACTTGGGTCACATCTCTACAGTTCTTTCTGTCTGAACTCTGAACCTAGAAGCGCCACAGGTAGGTaGGAAGCAGGTCGATGCCGC | + |
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Preference number: 4 (lower is better) Translates to: YKLGSHLYSSFCLNSEPRSATGR*EAGRCR Trigger: GCGGCATCGACCTGCTTCGCACCTACCTGTGGCGCT...TCTAGGTTCAGAGTTCAGACAGAAAGAACTGTAGAGATGTGACCCAAGTTTGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| CDS-3UTR TCA 90 bp | GCACAGAGGCCAATCAACGCCCCAAAGCACATCAAGCCCAAGCTGACGAAGGGTTTTATTCGAGTCACTTaGATTCTCTTGAATGGGACT | + |
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Preference number: 4 (lower is better) Translates to: AQRPINAPKHIKPKLTKGFIRVT*ILLNGT Trigger: AGTCCCATTCAAGAGAATTCAAGTGACTCGAATAAA...ACCCTTCGTCAGCTTGGGCTTGATGTGCTTTGGGGCGTTGATTGGCCTCTGTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159944.8 |
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| CDS-3UTR CCA 90 bp | CGGCAACATAGCAACTCACGGAGCCCAGTGTGCACAGACCTGCAAGGAGATGGATTGAATTCTCTTGAATaGGACTTCGATACTCATACC | + |
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Preference number: 4 (lower is better) Translates to: RQHSNSRSPVCTDLQGDGLNSLE*DFDTHT Trigger: GGTATGAGTATCGAAGTCCCATTCAAGAGAATTCAA...TCCATCTCCTTGCAGGTCTGTGCACACTGGGCTCCGTGAGTTGCTATGTTGCCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159944.8 |
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| CDS-3UTR GCA 90 bp | CTGTTTTGGGTCAATTTGCCACTGCTAATATTCTTTTACAAACTTGGGTCACATAGCGCCACAGGTAGGTaGGAAGCAGGTCGATGCCGC | + |
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Preference number: 4 (lower is better) Translates to: LFWVNLPLLIFFYKLGSHSATGR*EAGRCR Trigger: GCGGCATCGACCTGCTTCGCACCTACCTGTGGCGCT...ATGTGACCCAAGTTTGTAAAAGAATATTAGCAGTGGCAAATTGACCCAAAACAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| CDS-3UTR CCA 90 bp | ATAAAGACCCATAAATGGAGGTTAGTAGGTGGCAGCTACAGCTTTAGATCTTGTGATGGAGAATGCCAGTaGCGAGGGTGGGATACAGGC | + |
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Preference number: 4 (lower is better) Translates to: IKTHKWRLVGGSYSFRSCDGECQ*RGWDTG Trigger: GCCTGTATCCCACCCTCGCCACTGGCATTCTCCATC...ACAAGATCTAAAGCTGTAGCTGCCACCTACTAACCTCCATTTATGGGTCTTTAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023426.12 |
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| CDS-3UTR TCA 90 bp | GTCAATTTGCCACTGCTAATATTCTTTTACAAACTTGGGTCACATCTCTACAGTAGAGAGCGGCCGCCATaGACTGTAAGGGAGCCGAGA | + |
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Preference number: 4 (lower is better) Translates to: VNLPLLIFFYKLGSHLYSRERPP*TVREPR Trigger: TCTCGGCTCCCTTACAGTTCATGGCGGCCGCTCTCT...ACTGTAGAGATGTGACCCAAGTTTGTAAAAGAATATTAGCAGTGGCAAATTGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| CDS-3UTR CCA 90 bp | TACAAACTTGGGTCACATCTCTACAGTTCTTTCTGTCTGAACTCTGAACCTAGAAGAAGTCCGTGCCTATaGAGGCCGCCATGTAGATGG | + |
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Preference number: 4 (lower is better) Translates to: YKLGSHLYSSFCLNSEPRRSPCL*RPPCRW Trigger: CCATCTACATGGCGGCCTCCATAGGCACGGACTTCT...TCTAGGTTCAGAGTTCAGACAGAAAGAACTGTAGAGATGTGACCCAAGTTTGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| CDS-3UTR TCA 90 bp | TACAAACTTGGGTCACATCTCTACAGTTCTTTCTGTCTGAACTCTGAACCTAGATGTTTTTGGGTATGGTaGTGCACCGTCTCCACAGCC | + |
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Preference number: 4 (lower is better) Translates to: YKLGSHLYSSFCLNSEPRCFWVW*CTVSTA Trigger: GGCTGTGGAGACGGTGCATCACCATACCCAAAAACA...TCTAGGTTCAGAGTTCAGACAGAAAGAACTGTAGAGATGTGACCCAAGTTTGTA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| CDS-3UTR GCA 90 bp | TACAAACTTGGGTCACATCTCTACAGTTCTTTCTGTCTGAACTCTGAACCTAGATGCCGCTATTGTGGTTaGCGGGGTCCACATACTTCT | + |
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Preference number: 4 (lower is better) Translates to: YKLGSHLYSSFCLNSEPRCRYCG*RGPHTS Trigger: AGAAGTATGTGGACCCCGGCAACCACAATAGCGGCA...TCTAGGTTCAGAGTTCAGACAGAAAGAACTGTAGAGATGTGACCCAAGTTTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| CDS-3UTR CCA 90 bp | GTCAATTTGCCACTGCTAATATTCTTTTACAAACTTGGGTCACATCTCTACAGTGATGGAGAATGCCAGTaGCGAGGGTGGGATACAGGC | + |
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Preference number: 4 (lower is better) Translates to: VNLPLLIFFYKLGSHLYSDGECQ*RGWDTG Trigger: GCCTGTATCCCACCCTCGCCACTGGCATTCTCCATC...ACTGTAGAGATGTGACCCAAGTTTGTAAAAGAATATTAGCAGTGGCAAATTGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| CDS-3UTR GCA 90 bp | CTGTTTTGGGTCAATTTGCCACTGCTAATATTCTTTTACAAACTTGGGTCACATCAAGGAGATGGAGAATaGCAGTGGCGAGGGTGGGAT | + |
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Preference number: 4 (lower is better) Translates to: LFWVNLPLLIFFYKLGSHQGDGE*QWRGWD Trigger: ATCCCACCCTCGCCACTGGCATTCTCCATCTCCTTG...ATGTGACCCAAGTTTGTAAAAGAATATTAGCAGTGGCAAATTGACCCAAAACAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| CDS-3UTR GCA 90 bp | CAATTTGCCACTGCTAATATTCTTTTACAAACTTGGGTCACATCTCTACAGTTCTCACGGAGCCCAGTGTaGACAGACCTGCAAGGAGAT | + |
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Preference number: 4 (lower is better) Translates to: QFATANILLQTWVTSLQFSRSPV*TDLQGD Trigger: ATCTCCTTGCAGGTCTGTGCACACTGGGCTCCGTGA...GAACTGTAGAGATGTGACCCAAGTTTGTAAAAGAATATTAGCAGTGGCAAATTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| CDS-3UTR GCA 90 bp | CTGTTTTGGGTCAATTTGCCACTGCTAATATTCTTTTACAAACTTGGGTCACATTCACGGAGCCCAGTGTaGACAGACCTGCAAGGAGAT | + |
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Preference number: 4 (lower is better) Translates to: LFWVNLPLLIFFYKLGSHSRSPV*TDLQGD Trigger: ATCTCCTTGCAGGTCTGTGCACACTGGGCTCCGTGA...ATGTGACCCAAGTTTGTAAAAGAATATTAGCAGTGGCAAATTGACCCAAAACAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| CDS-3UTR CCA 90 bp | CTGTTTTGGGTCAATTTGCCACTGCTAATATTCTTTTACAAACTTGGGTCACATAGAAGTCCGTGCCTATaGAGGCCGCCATGTAGATGG | + |
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Preference number: 4 (lower is better) Translates to: LFWVNLPLLIFFYKLGSHRSPCL*RPPCRW Trigger: CCATCTACATGGCGGCCTCCATAGGCACGGACTTCT...ATGTGACCCAAGTTTGTAAAAGAATATTAGCAGTGGCAAATTGACCCAAAACAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| CDS-3UTR TCA 90 bp | CTGTTTTGGGTCAATTTGCCACTGCTAATATTCTTTTACAAACTTGGGTCACATTGTTTTTGGGTATGGTaGTGCACCGTCTCCACAGCC | + |
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Preference number: 4 (lower is better) Translates to: LFWVNLPLLIFFYKLGSHCFWVW*CTVSTA Trigger: GGCTGTGGAGACGGTGCATCACCATACCCAAAAACA...ATGTGACCCAAGTTTGTAAAAGAATATTAGCAGTGGCAAATTGACCCAAAACAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| CDS-3UTR GCA 90 bp | CTGTTTTGGGTCAATTTGCCACTGCTAATATTCTTTTACAAACTTGGGTCACATTGCCGCTATTGTGGTTaGCGGGGTCCACATACTTCT | + |
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Preference number: 4 (lower is better) Translates to: LFWVNLPLLIFFYKLGSHCRYCG*RGPHTS Trigger: AGAAGTATGTGGACCCCGGCAACCACAATAGCGGCA...ATGTGACCCAAGTTTGTAAAAGAATATTAGCAGTGGCAAATTGACCCAAAACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| CDS-3UTR GCA 90 bp | GTCAATTTGCCACTGCTAATATTCTTTTACAAACTTGGGTCACATCTCTACAGTCAGTGTGCACAGACCTaGAAGGAGATGGAGAATGCC | + |
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Preference number: 4 (lower is better) Translates to: VNLPLLIFFYKLGSHLYSQCAQT*KEMENA Trigger: GGCATTCTCCATCTCCTTGCAGGTCTGTGCACACTG...ACTGTAGAGATGTGACCCAAGTTTGTAAAAGAATATTAGCAGTGGCAAATTGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| CDS-3UTR GCA 90 bp | CTGTTTTGGGTCAATTTGCCACTGCTAATATTCTTTTACAAACTTGGGTCACATCAGTGTGCACAGACCTaGAAGGAGATGGAGAATGCC | + |
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Preference number: 4 (lower is better) Translates to: LFWVNLPLLIFFYKLGSHQCAQT*KEMENA Trigger: GGCATTCTCCATCTCCTTGCAGGTCTGTGCACACTG...ATGTGACCCAAGTTTGTAAAAGAATATTAGCAGTGGCAAATTGACCCAAAACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| CDS-3UTR CCA 90 bp | CTGTTTTGGGTCAATTTGCCACTGCTAATATTCTTTTACAAACTTGGGTCACATTCTTTCCGGTTGGTGTaGGCAGCCCAGATGAAGAGA | + |
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Preference number: 4 (lower is better) Translates to: LFWVNLPLLIFFYKLGSHSFRLV*AAQMKR Trigger: TCTCTTCATCTGGGCTGCCCACACCAACCGGAAAGA...ATGTGACCCAAGTTTGTAAAAGAATATTAGCAGTGGCAAATTGACCCAAAACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| 3UTR CAA 72 bp | CACTACTGGACTGAGCAGACGTTAGCAGACCCTGTTTaGGGTCAATTTGCCACTGCTAATATTCTTTTACAA | + |
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Preference number: 4 (lower is better) Translates to: HYWTEQTLADPV*GQFATANILLQ Trigger: TTGTAAAAGAATATTAGCAGTGGCAAATTGACCCAAAACAGGGTCTGCTAACGTCTGCTCAGTCCAGTAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| CDS-3UTR CCA 90 bp | ATAAAGACCCATAAATGGAGGTTAGTAGGTGGCAGCTACAGCTTTAGATCTTGTCTCCAGATACATCCTTaGGCAGCTCTACTTTCTGAT | + |
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Preference number: 4 (lower is better) Translates to: IKTHKWRLVGGSYSFRSCLQIHP*AALLSD Trigger: ATCAGAAAGTAGAGCTGCCCAAGGATGTATCTGGAG...ACAAGATCTAAAGCTGTAGCTGCCACCTACTAACCTCCATTTATGGGTCTTTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023426.12 |
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| CDS-3UTR CCA 90 bp | GTCAATTTGCCACTGCTAATATTCTTTTACAAACTTGGGTCACATCTCTACAGTCTCCAGATACATCCTTaGGCAGCTCTACTTTCTGAT | + |
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Preference number: 4 (lower is better) Translates to: VNLPLLIFFYKLGSHLYSLQIHP*AALLSD Trigger: ATCAGAAAGTAGAGCTGCCCAAGGATGTATCTGGAG...ACTGTAGAGATGTGACCCAAGTTTGTAAAAGAATATTAGCAGTGGCAAATTGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| 3UTR CAA 72 bp | TCCATGAACTGCTCGTTTAGTGTGAAACTCATGCATTaGGTAACCACATCAAATGACTCTGGAACAAGAACA | + |
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Preference number: 4 (lower is better) Translates to: SMNCSFSVKLMH*VTTSNDSGTRT Trigger: TGTTCTTGTTCCAGAGTCATTTGATGTGGTTACCAAATGCATGAGTTTCACACTAAACGAGCAGTTCATGGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159944.8 |
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| CDS-3UTR TCA 90 bp | ATAAAGACCCATAAATGGAGGTTAGTAGGTGGCAGCTACAGCTTTAGATCTTGTTTTATTCGAGTCACTTaGATTCTCTTGAATGGGACT | + |
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Preference number: 4 (lower is better) Translates to: IKTHKWRLVGGSYSFRSCFIRVT*ILLNGT Trigger: AGTCCCATTCAAGAGAATTCAAGTGACTCGAATAAA...ACAAGATCTAAAGCTGTAGCTGCCACCTACTAACCTCCATTTATGGGTCTTTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023426.12 |
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| CDS-3UTR TCA 90 bp | CTGTTTTGGGTCAATTTGCCACTGCTAATATTCTTTTACAAACTTGGGTCACATTCACTTGAATTCTCTTaGATGGGACTTCGATACTCA | + |
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Preference number: 4 (lower is better) Translates to: LFWVNLPLLIFFYKLGSHSLEFS*MGLRYS Trigger: TGAGTATCGAAGTCCCATTCAAGAGAATTCAAGTGA...ATGTGACCCAAGTTTGTAAAAGAATATTAGCAGTGGCAAATTGACCCAAAACAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| CDS-3UTR TCA 90 bp | GTCAATTTGCCACTGCTAATATTCTTTTACAAACTTGGGTCACATCTCTACAGTTCACTTGAATTCTCTTaGATGGGACTTCGATACTCA | + |
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Preference number: 4 (lower is better) Translates to: VNLPLLIFFYKLGSHLYSSLEFS*MGLRYS Trigger: TGAGTATCGAAGTCCCATTCAAGAGAATTCAAGTGA...ACTGTAGAGATGTGACCCAAGTTTGTAAAAGAATATTAGCAGTGGCAAATTGAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| CDS-3UTR CCA 90 bp | CTGTTTTGGGTCAATTTGCCACTGCTAATATTCTTTTACAAACTTGGGTCACATTTGAATTCTCTTGAATaGGACTTCGATACTCATACC | + |
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Preference number: 4 (lower is better) Translates to: LFWVNLPLLIFFYKLGSHLNSLE*DFDTHT Trigger: GGTATGAGTATCGAAGTCCCATTCAAGAGAATTCAA...ATGTGACCCAAGTTTGTAAAAGAATATTAGCAGTGGCAAATTGACCCAAAACAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| CDS TCA 90 bp | CTGTCCTTTCCGGTGGCGCATACCAGTGAGTGTTTTTGGGTATGGTaGTGCACCGTCTCCACAGCCCCAAGCTGCCGTTGTATCGGAACA | + |
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Preference number: 5 (lower is better) Translates to: LSFPVAHTSECFWVW*CTVSTAPSCRCIGT Trigger: TGTTCCGATACAACGGCAGCTTGGGGCTGTGGAGACGGTGCATCACCATACCCAAAAACACTCACTGGTATGCGCCACCGGAAAGGACAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000023426.12 ENSMUST00000159944.8 ENSMUST00000162057.8 ENSMUST00000162191.2 |
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| CDS TCA 90 bp | GTAACCACATCAAATGACTCTGTCCTTTCCGGTGGCGCATACCAGTaGGTGTTTTTGGGTATGGTGATGCACCGTCTCCACAGCCCCAAG | + |
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Preference number: 5 (lower is better) Translates to: VTTSNDSVLSGGAYQ*VFLGMVMHRLHSPK Trigger: CTTGGGGCTGTGGAGACGGTGCATCACCATACCCAAAAACACTCACTGGTATGCGCCACCGGAAAGGACAGAGTCATTTGATGTGGTTAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 ENSMUST00000162191.2 |
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| CDS-3UTR CAA 90 bp | TACAAACTTGGGTCACATCTCTACAGTTCTTTCTGTCTGAACTCTGAACCTAGAGTGTACTCTTTCCGGTaGGTGTGGGCAGCCCAGATG | + |
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Preference number: 5 (lower is better) Translates to: YKLGSHLYSSFCLNSEPRVYSFR*VWAAQM Trigger: CATCTGGGCTGCCCACACCAACCGGAAAGAGTACAC...TCTAGGTTCAGAGTTCAGACAGAAAGAACTGTAGAGATGTGACCCAAGTTTGTA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| CDS TCA 90 bp | CTCGTCACCGAGGAAATCTTCCCAGGCGATTTTATTCGAGTCACTTaGATTCTCTTGAATGGGACTTCGATACTCATACCAGAAGTCCGT | + |
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Preference number: 5 (lower is better) Translates to: LVTEEIFPGDFIRVT*ILLNGTSILIPEVR Trigger: ACGGACTTCTGGTATGAGTATCGAAGTCCCATTCAAGAGAATTCAAGTGACTCGAATAAAATCGCCTGGGAAGATTTCCTCGGTGACGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023426.12 ENSMUST00000159944.8 ENSMUST00000162057.8 ENSMUST00000162191.2 |
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| CDS-3UTR CAA 90 bp | CTGTTTTGGGTCAATTTGCCACTGCTAATATTCTTTTACAAACTTGGGTCACATGTGTACTCTTTCCGGTaGGTGTGGGCAGCCCAGATG | + |
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Preference number: 5 (lower is better) Translates to: LFWVNLPLLIFFYKLGSHVYSFR*VWAAQM Trigger: CATCTGGGCTGCCCACACCAACCGGAAAGAGTACAC...ATGTGACCCAAGTTTGTAAAAGAATATTAGCAGTGGCAAATTGACCCAAAACAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| CDS TCA 90 bp | AGGAAATCTTCCCAGGCGATTTTATTCGAGTCACTTGAATTCTCTTaGATGGGACTTCGATACTCATACCAGAAGTCCGTGCCTATGGAG | + |
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Preference number: 5 (lower is better) Translates to: RKSSQAILFESLEFS*MGLRYSYQKSVPME Trigger: CTCCATAGGCACGGACTTCTGGTATGAGTATCGAAGTCCCATTCAAGAGAATTCAAGTGACTCGAATAAAATCGCCTGGGAAGATTTCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023426.12 ENSMUST00000159944.8 ENSMUST00000162057.8 ENSMUST00000162191.2 |
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| CDS-3UTR CAA 90 bp | ATAAAGACCCATAAATGGAGGTTAGTAGGTGGCAGCTACAGCTTTAGATCTTGTGTGAAACTCATGCATTaGGTAACCACATCAAATGAC | + |
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Preference number: 5 (lower is better) Translates to: IKTHKWRLVGGSYSFRSCVKLMH*VTTSND Trigger: GTCATTTGATGTGGTTACCAAATGCATGAGTTTCAC...ACAAGATCTAAAGCTGTAGCTGCCACCTACTAACCTCCATTTATGGGTCTTTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023426.12 |
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| CDS-3UTR CAA 90 bp | CAATTTGCCACTGCTAATATTCTTTTACAAACTTGGGTCACATCTCTACAGTTCGTGAAACTCATGCATTaGGTAACCACATCAAATGAC | + |
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Preference number: 5 (lower is better) Translates to: QFATANILLQTWVTSLQFVKLMH*VTTSND Trigger: GTCATTTGATGTGGTTACCAAATGCATGAGTTTCAC...GAACTGTAGAGATGTGACCCAAGTTTGTAAAAGAATATTAGCAGTGGCAAATTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 |
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| CDS TCA 72 bp | CCGGTGGCGCATACCAGTGAGTGTTTTTGGGTATGGTaGTGCACCGTCTCCACAGCCCCAAGCTGCCGTTGT | + |
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Preference number: 6 (lower is better) Translates to: PVAHTSECFWVW*CTVSTAPSCRC Trigger: ACAACGGCAGCTTGGGGCTGTGGAGACGGTGCATCACCATACCCAAAAACACTCACTGGTATGCGCCACCGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000023426.12 ENSMUST00000159944.8 ENSMUST00000162057.8 ENSMUST00000162191.2 |
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| CDS TCA 72 bp | TCAAATGACTCTGTCCTTTCCGGTGGCGCATACCAGTaGGTGTTTTTGGGTATGGTGATGCACCGTCTCCAC | + |
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Preference number: 6 (lower is better) Translates to: SNDSVLSGGAYQ*VFLGMVMHRLH Trigger: GTGGAGACGGTGCATCACCATACCCAAAAACACTCACTGGTATGCGCCACCGGAAAGGACAGAGTCATTTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 ENSMUST00000162191.2 |
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| CDS CAA 90 bp | CCTCGTCACCGAGGAAATCTTCCCAGGCGATTTTATTCGAGTCACTaGAATTCTCTTGAATGGGACTTCGATACTCATACCAGAAGTCCG | + |
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Preference number: 6 (lower is better) Translates to: PRHRGNLPRRFYSSH*NSLEWDFDTHTRSP Trigger: CGGACTTCTGGTATGAGTATCGAAGTCCCATTCAAGAGAATTCAAGTGACTCGAATAAAATCGCCTGGGAAGATTTCCTCGGTGACGAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023426.12 ENSMUST00000159944.8 ENSMUST00000162057.8 ENSMUST00000162191.2 |
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| CDS CAA 90 bp | ACATACTTCTCCATGAACTGCTCGTTTAGTGTGAAACTCATGCATTaGGTAACCACATCAAATGACTCTGTCCTTTCCGGTGGCGCATAC | + |
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Preference number: 6 (lower is better) Translates to: TYFSMNCSFSVKLMH*VTTSNDSVLSGGAY Trigger: GTATGCGCCACCGGAAAGGACAGAGTCATTTGATGTGGTTACCAAATGCATGAGTTTCACACTAAACGAGCAGTTCATGGAGAAGTATGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 ENSMUST00000162191.2 |
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| CDS CAA 72 bp | CGAGGAAATCTTCCCAGGCGATTTTATTCGAGTCACTaGAATTCTCTTGAATGGGACTTCGATACTCATACC | + |
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Preference number: 6 (lower is better) Translates to: RGNLPRRFYSSH*NSLEWDFDTHT Trigger: GGTATGAGTATCGAAGTCCCATTCAAGAGAATTCAAGTGACTCGAATAAAATCGCCTGGGAAGATTTCCTCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023426.12 ENSMUST00000159944.8 ENSMUST00000162057.8 ENSMUST00000162191.2 |
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| CDS CAA 72 bp | TCCATGAACTGCTCGTTTAGTGTGAAACTCATGCATTaGGTAACCACATCAAATGACTCTGTCCTTTCCGGT | + |
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Preference number: 6 (lower is better) Translates to: SMNCSFSVKLMH*VTTSNDSVLSG Trigger: ACCGGAAAGGACAGAGTCATTTGATGTGGTTACCAAATGCATGAGTTTCACACTAAACGAGCAGTTCATGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023426.12 ENSMUST00000162057.8 ENSMUST00000162191.2 |
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| CDS TCA 72 bp | GAGGAAATCTTCCCAGGCGATTTTATTCGAGTCACTTaGATTCTCTTGAATGGGACTTCGATACTCATACCA | + |
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Preference number: 6 (lower is better) Translates to: EEIFPGDFIRVT*ILLNGTSILIP Trigger: TGGTATGAGTATCGAAGTCCCATTCAAGAGAATTCAAGTGACTCGAATAAAATCGCCTGGGAAGATTTCCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023426.12 ENSMUST00000159944.8 ENSMUST00000162057.8 ENSMUST00000162191.2 |
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