Pregenerated sensors for CLDN9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000066720Ensembl transcript IDs: ENSMUST00000085989.8
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GGTCCAGGTTCCAGAGTAAGAAAGTCCAGGAGAGCAAACCACAGCAAAATCCTGGCCCAATGCAGGGCATaGAGCCGCAGGTGGAAGCTT | + |
|
Preference number: 2 (lower is better) Translates to: GPGSRVRKSRRANHSKILAQCRA*SRRWKL Trigger: AAGCTTCCACCTGCGGCTTCATGCCCTGCATTGGGC...CAGGATTTTGCTGTGGTTTGCTCTCCTGGACTTTCTTACTCTGGAACCTGGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085989.8 |
||
| 3UTR-3UTR GCA 90 bp | CAGAGTAAGAAAGTCCAGGAGAGCAAACCACAGCAAAATCCTGGGAGGCAGCGAGAGCTTTCTCAAGGTTaGAACCACTACAGAGGGTTA | + |
|
Preference number: 2 (lower is better) Translates to: QSKKVQESKPQQNPGRQRELSQG*NHYRGL Trigger: TAACCCTCTGTAGTGGTTGCAACCTTGAGAAAGCTC...TCGCTGCCTCCCAGGATTTTGCTGTGGTTTGCTCTCCTGGACTTTCTTACTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085989.8 |
||
| 3UTR-3UTR CCA 90 bp | AGGTCCAGGTTCCAGAGTAAGAAAGTCCAGGAGAGCAAACCACAGCAAAATCCTCTAAGAGCCAAGTCCTaGCCAATAAGTGAGCTTCGC | + |
|
Preference number: 2 (lower is better) Translates to: RSRFQSKKVQESKPQQNPLRAKS*PISELR Trigger: GCGAAGCTCACTTATTGGCCAGGACTTGGCTCTTAG...AGGATTTTGCTGTGGTTTGCTCTCCTGGACTTTCTTACTCTGGAACCTGGACCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085989.8 |
||
| 3UTR TCA 72 bp | TACAATGTGCTTTTATTCACAGGTAGGGTAGGGGGCTaGGTAACTTGGATTCAGGTGGTGCTTGGGCTAGAC | + |
|
Preference number: 3 (lower is better) Translates to: YNVLLFTGRVGG*VTWIQVVLGLD Trigger: GTCTAGCCCAAGCACCACCTGAATCCAAGTTACTCAGCCCCCTACCCTACCTGTGAATAAAAGCACATTGTA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000085989.8 |
||
| CDS-3UTR CCA 90 bp | AGCCCAATGCAGGGCATGAAGCCGCAGGTGGAAGCTTCTGGAAGAAGCCTCAGCTGGAGTAGCCCAGCCTaGGGCCGCGGGGACGCTCAA | + |
|
Preference number: 4 (lower is better) Translates to: SPMQGMKPQVEASGRSLSWSSPA*GRGDAQ Trigger: TTGAGCGTCCCCGCGGCCCCAGGCTGGGCTACTCCA...GCTGAGGCTTCTTCCAGAAGCTTCCACCTGCGGCTTCATGCCCTGCATTGGGCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085989.8 |
||
| CDS-3UTR TCA 90 bp | AGCCCAATGCAGGGCATGAAGCCGCAGGTGGAAGCTTCTGGAAGAAGCCTCAGCGGAGGACCCCTGCGGTaGGTACGATACGGGCCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: SPMQGMKPQVEASGRSLSGGPLR*VRYGPW Trigger: CCAAGGCCCGTATCGTACTCACCGCAGGGGTCCTCC...GCTGAGGCTTCTTCCAGAAGCTTCCACCTGCGGCTTCATGCCCTGCATTGGGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085989.8 |
||
| CDS-3UTR GCA 90 bp | CAGAGTAAGAAAGTCCAGGAGAGCAAACCACAGCAAAATCCTGGGAGGCAGCGAAGGGCTCTGGCTGCCTaGAGGTCCTGGGGCAGCGCC | + |
|
Preference number: 4 (lower is better) Translates to: QSKKVQESKPQQNPGRQRRALAA*RSWGSA Trigger: GGCGCTGCCCCAGGACCTGCAGGCAGCCAGAGCCCT...TCGCTGCCTCCCAGGATTTTGCTGTGGTTTGCTCTCCTGGACTTTCTTACTCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085989.8 |
||
| CDS-3UTR GCA 90 bp | GTAAGAAAGTCCAGGAGAGCAAACCACAGCAAAATCCTGGGAGGCAGCGATAAGACAGAGGGCTCTGGCTaGCTGCAGGTCCTGGGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: VRKSRRANHSKILGGSDKTEGSG*LQVLGQ Trigger: CTGCCCCAGGACCTGCAGGCAGCCAGAGCCCTCTGT...CTTATCGCTGCCTCCCAGGATTTTGCTGTGGTTTGCTCTCCTGGACTTTCTTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085989.8 |
||
| CDS-3UTR CCA 90 bp | TCCAGAGTAAGAAAGTCCAGGAGAGCAAACCACAGCAAAATCCTGGGAGGCAGCCTGAACGGGAAGGGATaGAGTAGCCCAGCCTGGGGC | + |
|
Preference number: 4 (lower is better) Translates to: SRVRKSRRANHSKILGGSLNGKG*SSPAWG Trigger: GCCCCAGGCTGGGCTACTCCATCCCTTCCCGTTCAG...GCTGCCTCCCAGGATTTTGCTGTGGTTTGCTCTCCTGGACTTTCTTACTCTGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085989.8 |
||
| CDS-3UTR TCA 90 bp | AGCCCAATGCAGGGCATGAAGCCGCAGGTGGAAGCTTCTGGAAGAAGCCTCAGCTATAAAAATCCTGGATaGTGGCATGGGCTGTCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: SPMQGMKPQVEASGRSLSYKNPG*WHGLSS Trigger: GCTGGACAGCCCATGCCATCATCCAGGATTTTTATA...GCTGAGGCTTCTTCCAGAAGCTTCCACCTGCGGCTTCATGCCCTGCATTGGGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085989.8 |
||
| CDS-3UTR GCA 90 bp | TCCAGGTTCCAGAGTAAGAAAGTCCAGGAGAGCAAACCACAGCAAAATCCTGGGGCACAGCCAGGGTCATaGCGAGGAGTTCAAGGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: SRFQSKKVQESKPQQNPGAQPGS*RGVQGQ Trigger: CTGGCCTTGAACTCCTCGGCATGACCCTGGCTGTGC...CCCAGGATTTTGCTGTGGTTTGCTCTCCTGGACTTTCTTACTCTGGAACCTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085989.8 |
||
| CDS-3UTR GCA 90 bp | AGCCTCAGTATTAGGTCACAGTCCACATCTTACTTTGAAGGCAAGGAGGCTGAGGAGGAGGAGGACCCCTaGGGTGAGTACGATACGGGC | + |
|
Preference number: 4 (lower is better) Translates to: SLSIRSQSTSYFEGKEAEEEEDP*GEYDTG Trigger: GCCCGTATCGTACTCACCGCAGGGGTCCTCCTCCTC...CTCAGCCTCCTTGCCTTCAAAGTAAGATGTGGACTGTGACCTAATACTGAGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085989.8 |
||
| CDS-3UTR CCA 90 bp | AGGTCCAGGTTCCAGAGTAAGAAAGTCCAGGAGAGCAAACCACAGCAAAATCCTACACACGTGGTGCACTaGGCGCCCGTGATAGCCACC | + |
|
Preference number: 4 (lower is better) Translates to: RSRFQSKKVQESKPQQNPTHVVH*APVIAT Trigger: GGTGGCTATCACGGGCGCCCAGTGCACCACGTGTGT...AGGATTTTGCTGTGGTTTGCTCTCCTGGACTTTCTTACTCTGGAACCTGGACCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085989.8 |
||
| CDS-3UTR CCA 90 bp | GTAAGAAAGTCCAGGAGAGCAAACCACAGCAAAATCCTGGGAGGCAGCGATAAGGTACGATACGGGCCTTaGCACCTTCGTCCTCCACAC | + |
|
Preference number: 4 (lower is better) Translates to: VRKSRRANHSKILGGSDKVRYGP*HLRPPH Trigger: GTGTGGAGGACGAAGGTGCCAAGGCCCGTATCGTAC...CTTATCGCTGCCTCCCAGGATTTTGCTGTGGTTTGCTCTCCTGGACTTTCTTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085989.8 |
||
| CDS-3UTR CCA 90 bp | AGCCCAATGCAGGGCATGAAGCCGCAGGTGGAAGCTTCTGGAAGAAGCCTCAGCGGCTTCCGCAACCAGTaGGTTATAAAAATCCTGGAT | + |
|
Preference number: 4 (lower is better) Translates to: SPMQGMKPQVEASGRSLSGFRNQ*VIKILD Trigger: ATCCAGGATTTTTATAACCCACTGGTTGCGGAAGCC...GCTGAGGCTTCTTCCAGAAGCTTCCACCTGCGGCTTCATGCCCTGCATTGGGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085989.8 |
||
| CDS-3UTR TCA 90 bp | GTAAGAAAGTCCAGGAGAGCAAACCACAGCAAAATCCTGGGAGGCAGCGATAAGTCCAGCAGACAGGGATaGGCACCAAAATGCCCGAGA | + |
|
Preference number: 4 (lower is better) Translates to: VRKSRRANHSKILGGSDKSSRQG*APKCPR Trigger: TCTCGGGCATTTTGGTGCTCATCCCTGTCTGCTGGA...CTTATCGCTGCCTCCCAGGATTTTGCTGTGGTTTGCTCTCCTGGACTTTCTTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085989.8 |
||
| CDS CCA 90 bp | CATAGTCCCTCTTATCCAGTCCCGAAGCACCTGAACGGGAAGGGATaGAGTAGCCCAGCCTGGGGCCGCGGGGACGCTCAAAGTGTGACG | + |
|
Preference number: 5 (lower is better) Translates to: HSPSYPVPKHLNGKG*SSPAWGRGDAQSVT Trigger: CGTCACACTTTGAGCGTCCCCGCGGCCCCAGGCTGGGCTACTCCATCCCTTCCCGTTCAGGTGCTTCGGGACTGGATAAGAGGGACTATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085989.8 |
||
| CDS-3UTR CAA 90 bp | TCCAGAGTAAGAAAGTCCAGGAGAGCAAACCACAGCAAAATCCTGGGAGGCAGCAGTACGATACGGGCCTaGGCACCTTCGTCCTCCACA | + |
|
Preference number: 5 (lower is better) Translates to: SRVRKSRRANHSKILGGSSTIRA*APSSST Trigger: TGTGGAGGACGAAGGTGCCAAGGCCCGTATCGTACT...GCTGCCTCCCAGGATTTTGCTGTGGTTTGCTCTCCTGGACTTTCTTACTCTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085989.8 |
||
| CDS-3UTR CAA 90 bp | AGGTCCAGGTTCCAGAGTAAGAAAGTCCAGGAGAGCAAACCACAGCAAAATCCTGCCACAACGATGCTGTaGCCGATGAAGGCGGTCACC | + |
|
Preference number: 5 (lower is better) Translates to: RSRFQSKKVQESKPQQNPATTML*PMKAVT Trigger: GGTGACCGCCTTCATCGGCAACAGCATCGTTGTGGC...AGGATTTTGCTGTGGTTTGCTCTCCTGGACTTTCTTACTCTGGAACCTGGACCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085989.8 |
||
| CDS CCA 72 bp | TCTTATCCAGTCCCGAAGCACCTGAACGGGAAGGGATaGAGTAGCCCAGCCTGGGGCCGCGGGGACGCTCAA | + |
|
Preference number: 6 (lower is better) Translates to: SYPVPKHLNGKG*SSPAWGRGDAQ Trigger: TTGAGCGTCCCCGCGGCCCCAGGCTGGGCTACTCCATCCCTTCCCGTTCAGGTGCTTCGGGACTGGATAAGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085989.8 |
||