Pregenerated sensors for CLDN8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050520Ensembl transcript IDs: ENSMUST00000049697.5
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GATGTATATTCCCAAGTCATTTCAGCACTGCTTTTAGTTCATATGAATTCTCAGCTGTCTCTATTTGTGTaGGATATAACTGCCACCCGC | + |
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Preference number: 2 (lower is better) Translates to: DVYSQVISALLLVHMNSQLSLFV*DITATR Trigger: GCGGGTGGCAGTTATATCTCACACAAATAGAGACAG...CTGAGAATTCATATGAACTAAAAGCAGTGCTGAAATGACTTGGGAATATACATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| 3UTR-3UTR TCA 90 bp | CAAAGGCATAGAAAATGGGGAAATCCCTTCAACAGAAGAGAAATGATAAGTTTGTGTGCAGGTTTAGAGTaGCTGATAAAAAGGAAGAGC | + |
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Preference number: 2 (lower is better) Translates to: QRHRKWGNPFNRREMISLCAGLE*LIKRKS Trigger: GCTCTTCCTTTTTATCAGTCACTCTAAACCTGCACA...CAAACTTATCATTTCTCTTCTGTTGAAGGGATTTCCCCATTTTCTATGCCTTTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| 3UTR-3UTR CCA 90 bp | CAAAGGCATAGAAAATGGGGAAATCCCTTCAACAGAAGAGAAATGATAAGTTTGGTTAAGAAAGGTAAATaGATACAGTGTGGGCTCCAT | + |
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Preference number: 2 (lower is better) Translates to: QRHRKWGNPFNRREMISLVKKGK*IQCGLH Trigger: ATGGAGCCCACACTGTATCCATTTACCTTTCTTAAC...CAAACTTATCATTTCTCTTCTGTTGAAGGGATTTCCCCATTTTCTATGCCTTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| 3UTR-3UTR CCA 90 bp | CAAAGGCATAGAAAATGGGGAAATCCCTTCAACAGAAGAGAAATGATAAGTTTGACAAGCTTTTGGATTTaGAGGGTTTGTGTCTCTCTT | + |
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Preference number: 2 (lower is better) Translates to: QRHRKWGNPFNRREMISLTSFWI*RVCVSL Trigger: AAGAGAGACACAAACCCTCCAAATCCAAAAGCTTGT...CAAACTTATCATTTCTCTTCTGTTGAAGGGATTTCCCCATTTTCTATGCCTTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| 3UTR-3UTR TCA 90 bp | GCACTGCTTTTAGTTCATATGAATTCTCAGGAGTTGAAATACATATGGACAACATCTATTTATTCAGCGTaGTGGATTGGCATTCCACTT | + |
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Preference number: 2 (lower is better) Translates to: ALLLVHMNSQELKYIWTTSIYSA*WIGIPL Trigger: AAGTGGAATGCCAATCCATCACGCTGAATAAATAGA...TGTTGTCCATATGTATTTCAACTCCTGAGAATTCATATGAACTAAAAGCAGTGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| 3UTR-3UTR GCA 90 bp | AATGCAATAGCTGAGTTCTATTTATTCAGCGTGATGGATTGGCATTCCACTTTATGGAAACATAGACGCTaGATATTTCCTCTAATGAGT | + |
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Preference number: 2 (lower is better) Translates to: NAIAEFYLFSVMDWHSTLWKHRR*IFPLMS Trigger: ACTCATTAGAGGAAATATGCAGCGTCTATGTTTCCA...TAAAGTGGAATGCCAATCCATCACGCTGAATAAATAGAACTCAGCTATTGCATT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| 3UTR TCA 72 bp | AATAACAGTTGTCTCAAATTAGGAGGAAACACAGAGTaGTACTACACTTCAATAGAACTTAGCAAAGGCATA | + |
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Preference number: 3 (lower is better) Translates to: NNSCLKLGGNTE*YYTSIELSKGI Trigger: TATGCCTTTGCTAAGTTCTATTGAAGTGTAGTATCACTCTGTGTTTCCTCCTAATTTGAGACAACTGTTATT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS-3UTR GCA 90 bp | GATAATGTCATGACACAGAGAAATCACAGCTTAAGCCAACAGTCTTTCGATGTGCCACCGTGCCCACCATaGCAACACCACCAAGCACCA | + |
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Preference number: 4 (lower is better) Translates to: DNVMTQRNHSLSQQSFDVPPCPP*QHHQAP Trigger: TGGTGCTTGGTGGTGTTGGCATGGTGGGCACGGTGG...CACATCGAAAGACTGTTGGCTTAAGCTGTGATTTCTCTGTGTCATGACATTATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS-3UTR CCA 90 bp | GATAATGTCATGACACAGAGAAATCACAGCTTAAGCCAACAGTCTTTCGATGTGGGATGCCTGGAGGTCTaGACTAAGAGCCAGCAGGGA | + |
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Preference number: 4 (lower is better) Translates to: DNVMTQRNHSLSQQSFDVGCLEV*TKSQQG Trigger: TCCCTGCTGGCTCTTAGTCCAGACCTCCAGGCATCC...CACATCGAAAGACTGTTGGCTTAAGCTGTGATTTCTCTGTGTCATGACATTATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS-3UTR TCA 90 bp | GATAATGTCATGACACAGAGAAATCACAGCTTAAGCCAACAGTCTTTCGATGTGGCAGACACTCTCCACTaGGGCATGATAGTCACAGCC | + |
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Preference number: 4 (lower is better) Translates to: DNVMTQRNHSLSQQSFDVADTLH*GMIVTA Trigger: GGCTGTGACTATCATGCCTCAGTGGAGAGTGTCTGC...CACATCGAAAGACTGTTGGCTTAAGCTGTGATTTCTCTGTGTCATGACATTATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS-3UTR CCA 90 bp | CAAAGGCATAGAAAATGGGGAAATCCCTTCAACAGAAGAGAAATGATAAGTTTGAGTCCTCGGGATGCCTaGAGGTCTGGACTAAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: QRHRKWGNPFNRREMISLSPRDA*RSGLRA Trigger: GGCTCTTAGTCCAGACCTCCAGGCATCCCGAGGACT...CAAACTTATCATTTCTCTTCTGTTGAAGGGATTTCCCCATTTTCTATGCCTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS-3UTR CCA 90 bp | GCACTGCTTTTAGTTCATATGAATTCTCAGGAGTTGAAATACATATGGACAACACGTCCCCCGTGCATCTaGTGCACTTCATTCCGAGGA | + |
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Preference number: 4 (lower is better) Translates to: ALLLVHMNSQELKYIWTTRPPCI*CTSFRG Trigger: TCCTCGGAATGAAGTGCACCAGATGCACGGGGGACG...TGTTGTCCATATGTATTTCAACTCCTGAGAATTCATATGAACTAAAAGCAGTGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS-3UTR CCA 90 bp | GATAATGTCATGACACAGAGAAATCACAGCTTAAGCCAACAGTCTTTCGATGTGAGTGGTGCGATGGGATaGTACCGAGTACCTGTAACT | + |
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Preference number: 4 (lower is better) Translates to: DNVMTQRNHSLSQQSFDVSGAMG*YRVPVT Trigger: AGTTACAGGTACTCGGTACCATCCCATCGCACCACT...CACATCGAAAGACTGTTGGCTTAAGCTGTGATTTCTCTGTGTCATGACATTATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS-3UTR CCA 90 bp | CAAAGGCATAGAAAATGGGGAAATCCCTTCAACAGAAGAGAAATGATAAGTTTGGGAAACTCCGTTGAGTaGTGCGATGGGATGGTACCG | + |
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Preference number: 4 (lower is better) Translates to: QRHRKWGNPFNRREMISLGNSVE*CDGMVP Trigger: CGGTACCATCCCATCGCACCACTCAACGGAGTTTCC...CAAACTTATCATTTCTCTTCTGTTGAAGGGATTTCCCCATTTTCTATGCCTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS-3UTR GCA 90 bp | GCACTGCTTTTAGTTCATATGAATTCTCAGGAGTTGAAATACATATGGACAACAAACTCCGTTGAGTGGTaGGATGGGATGGTACCGAGT | + |
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Preference number: 4 (lower is better) Translates to: ALLLVHMNSQELKYIWTTNSVEW*DGMVPS Trigger: ACTCGGTACCATCCCATCGCACCACTCAACGGAGTT...TGTTGTCCATATGTATTTCAACTCCTGAGAATTCATATGAACTAAAAGCAGTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS-3UTR TCA 90 bp | GATGTATATTCCCAAGTCATTTCAGCACTGCTTTTAGTTCATATGAATTCTCAGCCTTGCACTGCATTCTaGTGTTGGCATGCCTCATAC | + |
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Preference number: 4 (lower is better) Translates to: DVYSQVISALLLVHMNSQPCTAF*CWHASY Trigger: GTATGAGGCATGCCAACATCAGAATGCAGTGCAAGG...CTGAGAATTCATATGAACTAAAAGCAGTGCTGAAATGACTTGGGAATATACATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS-3UTR TCA 90 bp | GCACTGCTTTTAGTTCATATGAATTCTCAGGAGTTGAAATACATATGGACAACACGAGGATGGCTGTCATaGAAGCCAAGAAAGCCAAGA | + |
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Preference number: 4 (lower is better) Translates to: ALLLVHMNSQELKYIWTTRGWLS*KPRKPR Trigger: TCTTGGCTTTCTTGGCTTTCATGACAGCCATCCTCG...TGTTGTCCATATGTATTTCAACTCCTGAGAATTCATATGAACTAAAAGCAGTGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS-3UTR GCA 90 bp | GCACTGCTTTTAGTTCATATGAATTCTCAGGAGTTGAAATACATATGGACAACAACCACCAAGCACCAGTaGAGCCATTTGAAGAGCGTA | + |
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Preference number: 4 (lower is better) Translates to: ALLLVHMNSQELKYIWTTTTKHQ*SHLKSV Trigger: TACGCTCTTCAAATGGCTGCACTGGTGCTTGGTGGT...TGTTGTCCATATGTATTTCAACTCCTGAGAATTCATATGAACTAAAAGCAGTGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS-3UTR TCA 90 bp | CAAAGGCATAGAAAATGGGGAAATCCCTTCAACAGAAGAGAAATGATAAGTTTGCAATGTTACTTTCGATaGAGGCAGACACTCTCCACT | + |
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Preference number: 4 (lower is better) Translates to: QRHRKWGNPFNRREMISLQCYFR*RQTLST Trigger: AGTGGAGAGTGTCTGCCTTCATCGAAAGTAACATTG...CAAACTTATCATTTCTCTTCTGTTGAAGGGATTTCCCCATTTTCTATGCCTTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS-3UTR CCA 90 bp | GATAATGTCATGACACAGAGAAATCACAGCTTAAGCCAACAGTCTTTCGATGTGACACATACTGACTTTTaGAGTATATGCTCGGAGATC | + |
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Preference number: 4 (lower is better) Translates to: DNVMTQRNHSLSQQSFDVTHTDF*SICSEI Trigger: GATCTCCGAGCATATACTCCAAAAGTCAGTATGTGT...CACATCGAAAGACTGTTGGCTTAAGCTGTGATTTCTCTGTGTCATGACATTATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS GCA 90 bp | AGCCAAGAAAGCCAAGACGGACGCAGCACACATCAGTCCTCGGGATaGCTGGAGGTCTGGACTAAGAGCCAGCAGGGAGTCGTAGACCTT | + |
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Preference number: 5 (lower is better) Translates to: SQESQDGRSTHQSSG*LEVWTKSQQGVVDL Trigger: AAGGTCTACGACTCCCTGCTGGCTCTTAGTCCAGACCTCCAGGCATCCCGAGGACTGATGTGTGCTGCGTCCGTCTTGGCTTTCTTGGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS TCA 90 bp | CGTCCCCCGTGCATCTGGTGCACTTCATTCCGAGGATGGCTGTCATaGAAGCCAAGAAAGCCAAGACGGACGCAGCACACATCAGTCCTC | + |
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Preference number: 5 (lower is better) Translates to: RPPCIWCTSFRGWLS*KPRKPRRTQHTSVL Trigger: GAGGACTGATGTGTGCTGCGTCCGTCTTGGCTTTCTTGGCTTTCATGACAGCCATCCTCGGAATGAAGTGCACCAGATGCACGGGGGACG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS GCA 90 bp | GTAACTGTTGCTCCTTTCAGTACAACAAAACACACAACAGAACAGTaGTCCTCCAGCGATCAGCACCAGCGCTGTGGTCCAGCCTATGTA | + |
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Preference number: 5 (lower is better) Translates to: VTVAPFSTTKHTTEQ*SSSDQHQRCGPAYV Trigger: TACATAGGCTGGACCACAGCGCTGGTGCTGATCGCTGGAGGAGCACTGTTCTGTTGTGTGTTTTGTTGTACTGAAAGGAGCAACAGTTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS CCA 90 bp | AGTATATGCTCGGAGATCTCTTTTCGGCGTGGAAACTCCGTTGAGTaGTGCGATGGGATGGTACCGAGTACCTGTAACTGTTGCTCCTTT | + |
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Preference number: 5 (lower is better) Translates to: SICSEISFRRGNSVE*CDGMVPSTCNCCSF Trigger: AAAGGAGCAACAGTTACAGGTACTCGGTACCATCCCATCGCACCACTCAACGGAGTTTCCACGCCGAAAAGAGATCTCCGAGCATATACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS GCA 90 bp | TCCGTTGAGTGGTGCGATGGGATGGTACCGAGTACCTGTAACTGTTaGTCCTTTCAGTACAACAAAACACACAACAGAACAGTGCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: SVEWCDGMVPSTCNC*SFQYNKTHNRTVLL Trigger: GAGGAGCACTGTTCTGTTGTGTGTTTTGTTGTACTGAAAGGAGCAACAGTTACAGGTACTCGGTACCATCCCATCGCACCACTCAACGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS CCA 90 bp | AGATCTCTTTTCGGCGTGGAAACTCCGTTGAGTGGTGCGATGGGATaGTACCGAGTACCTGTAACTGTTGCTCCTTTCAGTACAACAAAA | + |
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Preference number: 5 (lower is better) Translates to: RSLFGVETPLSGAMG*YRVPVTVAPFSTTK Trigger: TTTTGTTGTACTGAAAGGAGCAACAGTTACAGGTACTCGGTACCATCCCATCGCACCACTCAACGGAGTTTCCACGCCGAAAAGAGATCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS-3UTR CAA 90 bp | CAAAGGCATAGAAAATGGGGAAATCCCTTCAACAGAAGAGAAATGATAAGTTTGTCTCTGATGATGGAATaGGCAACCCAGCTGACAGGG | + |
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Preference number: 5 (lower is better) Translates to: QRHRKWGNPFNRREMISLSLMME*ATQLTG Trigger: CCCTGTCAGCTGGGTTGCCAATTCCATCATCAGAGA...CAAACTTATCATTTCTCTTCTGTTGAAGGGATTTCCCCATTTTCTATGCCTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS GCA 72 bp | AGCCAAGACGGACGCAGCACACATCAGTCCTCGGGATaGCTGGAGGTCTGGACTAAGAGCCAGCAGGGAGTC | + |
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Preference number: 6 (lower is better) Translates to: SQDGRSTHQSSG*LEVWTKSQQGV Trigger: GACTCCCTGCTGGCTCTTAGTCCAGACCTCCAGGCATCCCGAGGACTGATGTGTGCTGCGTCCGTCTTGGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS TCA 72 bp | TGCATCTGGTGCACTTCATTCCGAGGATGGCTGTCATaGAAGCCAAGAAAGCCAAGACGGACGCAGCACACA | + |
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Preference number: 6 (lower is better) Translates to: CIWCTSFRGWLS*KPRKPRRTQHT Trigger: TGTGTGCTGCGTCCGTCTTGGCTTTCTTGGCTTTCATGACAGCCATCCTCGGAATGAAGTGCACCAGATGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS GCA 72 bp | GCTCCTTTCAGTACAACAAAACACACAACAGAACAGTaGTCCTCCAGCGATCAGCACCAGCGCTGTGGTCCA | + |
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Preference number: 6 (lower is better) Translates to: APFSTTKHTTEQ*SSSDQHQRCGP Trigger: TGGACCACAGCGCTGGTGCTGATCGCTGGAGGAGCACTGTTCTGTTGTGTGTTTTGTTGTACTGAAAGGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS CCA 72 bp | TTCGGCGTGGAAACTCCGTTGAGTGGTGCGATGGGATaGTACCGAGTACCTGTAACTGTTGCTCCTTTCAGT | + |
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Preference number: 6 (lower is better) Translates to: FGVETPLSGAMG*YRVPVTVAPFS Trigger: ACTGAAAGGAGCAACAGTTACAGGTACTCGGTACCATCCCATCGCACCACTCAACGGAGTTTCCACGCCGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS CCA 72 bp | TCGGAGATCTCTTTTCGGCGTGGAAACTCCGTTGAGTaGTGCGATGGGATGGTACCGAGTACCTGTAACTGT | + |
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Preference number: 6 (lower is better) Translates to: SEISFRRGNSVE*CDGMVPSTCNC Trigger: ACAGTTACAGGTACTCGGTACCATCCCATCGCACCACTCAACGGAGTTTCCACGCCGAAAAGAGATCTCCGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS CAA 72 bp | TATGCTCGGAGATCTCTTTTCGGCGTGGAAACTCCGTaGAGTGGTGCGATGGGATGGTACCGAGTACCTGTA | + |
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Preference number: 6 (lower is better) Translates to: YARRSLFGVETP*SGAMGWYRVPV Trigger: TACAGGTACTCGGTACCATCCCATCGCACCACTCAACGGAGTTTCCACGCCGAAAAGAGATCTCCGAGCATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS CAA 90 bp | TTTGGAGTATATGCTCGGAGATCTCTTTTCGGCGTGGAAACTCCGTaGAGTGGTGCGATGGGATGGTACCGAGTACCTGTAACTGTTGCT | + |
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Preference number: 6 (lower is better) Translates to: FGVYARRSLFGVETP*SGAMGWYRVPVTVA Trigger: AGCAACAGTTACAGGTACTCGGTACCATCCCATCGCACCACTCAACGGAGTTTCCACGCCGAAAAGAGATCTCCGAGCATATACTCCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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| CDS GCA 72 bp | TGGTGCGATGGGATGGTACCGAGTACCTGTAACTGTTaGTCCTTTCAGTACAACAAAACACACAACAGAACA | + |
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Preference number: 6 (lower is better) Translates to: WCDGMVPSTCNC*SFQYNKTHNRT Trigger: TGTTCTGTTGTGTGTTTTGTTGTACTGAAAGGAGCAACAGTTACAGGTACTCGGTACCATCCCATCGCACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049697.5 |
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