Pregenerated sensors for CLDN7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018569Ensembl transcript IDs: ENSMUST00000018713.13, ENSMUST00000108596.8, ENSMUST00000108597.8, ENSMUST00000151515.2
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | TGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACCCTGCCCGCAGGCTGGGCACTGAGGGATGGCAGTaGTCGCTATCAGGCCCACCC | + |
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Preference number: 4 (lower is better) Translates to: WRWSGQEAFASHPARRLGTEGWQ*SLSGPP Trigger: GGGTGGGCCTGATAGCGAGCACTGCCATCCCTCAGT...GCCCAGCCTGCGGGCAGGGTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTCCA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018713.13 ENSMUST00000108597.8 |
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| CDS-3UTR TCA 90 bp | GAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACCCTGCCCGCAGGCTGGGCTCGCCAAGCATGGCCATTaGAAAGCCCAGCAGTTGCAG | + |
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Preference number: 4 (lower is better) Translates to: EVEWPGGLCLPPCPQAGLAKHGH*KAQQLQ Trigger: CTGCAACTGCTGGGCTTTTCAATGGCCATGCTTGGC...GAGCCCAGCCTGCGGGCAGGGTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018713.13 ENSMUST00000108597.8 |
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| CDS-3UTR GCA 90 bp | GGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACCCTGCCCGCAGGCTGGGCTCTCGGTACGCAGCTTTaGTTTCACTGCCTGGACAGG | + |
|
Preference number: 4 (lower is better) Translates to: GGGVARRPLPPTLPAGWALGTQL*FHCLDR Trigger: CCTGTCCAGGCAGTGAAAGCAAAGCTGCGTACCGAG...AGCCCAGCCTGCGGGCAGGGTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTCC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR GCA 90 bp | GTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACCCTGCCCGCAGGCTGGGGGTAAGAGCGGGGTaGTCGGTACGCAGCTTTGCT | + |
|
Preference number: 4 (lower is better) Translates to: VWRWSGQEAFASHPARRLGVRAG*SVRSFA Trigger: AGCAAAGCTGCGTACCGAGCACCCCGCTCTTACCCC...CAGCCTGCGGGCAGGGTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTCCAAAC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR CCA 90 bp | GAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACCCTGCCCGCAGGCTGGGCTCCCACCCAGCCAAGCATaGCCATTGAAAAGCCCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: EVEWPGGLCLPPCPQAGLPPSQA*PLKSPA Trigger: TGCTGGGCTTTTCAATGGCCATGCTTGGCTGGGTGG...GAGCCCAGCCTGCGGGCAGGGTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018713.13 ENSMUST00000108597.8 |
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| CDS-3UTR GCA 90 bp | GGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACCCTGCCCGCAGGCTGGGCTAGCGTGTGCACTTCATaGCCATCGTGGCGACAAACA | + |
|
Preference number: 4 (lower is better) Translates to: GGGVARRPLPPTLPAGWASVCTS*PSWRQT Trigger: TGTTTGTCGCCACGATGGGCATGAAGTGCACACGCT...AGCCCAGCCTGCGGGCAGGGTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR GCA 90 bp | TTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACCCTGCCCGCAGGCTGGGACCAGAGCAGACCCTaGCCAGCCGATAAAGATGGC | + |
|
Preference number: 4 (lower is better) Translates to: FGGGVARRPLPPTLPAGWDQSRP*PADKDG Trigger: GCCATCTTTATCGGCTGGGCAGGGTCTGCTCTGGTC...CCAGCCTGCGGGCAGGGTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTCCAAA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR CCA 90 bp | TGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACCCTGCCCGCAGGCTGGGCTCGTGGCGACAAACATaGCTAAGAAGCCCAACACCA | + |
|
Preference number: 4 (lower is better) Translates to: WRWSGQEAFASHPARRLGSWRQT*LRSPTP Trigger: TGGTGTTGGGCTTCTTAGCCATGTTTGTCGCCACGA...GCCCAGCCTGCGGGCAGGGTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTCCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR CCA 90 bp | GGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACCCTGCCCGCAGGCTGGGCTTCGTGGCGACAAACATaGCTAAGAAGCCCAACACCA | + |
|
Preference number: 4 (lower is better) Translates to: GGGVARRPLPPTLPAGWASWRQT*LRSPTP Trigger: TGGTGTTGGGCTTCTTAGCCATGTTTGTCGCCACGA...AGCCCAGCCTGCGGGCAGGGTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR TCA 90 bp | GAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACCCTGCCCGCAGGCTGGGCTCCAAGACCTGCCACAATaGAAACAATGCCTCCAGTCA | + |
|
Preference number: 4 (lower is better) Translates to: EVEWPGGLCLPPCPQAGLQDLPQ*KQCLQS Trigger: TGACTGGAGGCATTGTTTTCATTGTGGCAGGTCTTG...GAGCCCAGCCTGCGGGCAGGGTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR TCA 90 bp | GTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACCCTGCCCGCAGGCTGCAAGACCTGCCACAATaGAAACAATGCCTCCAGTCA | + |
|
Preference number: 4 (lower is better) Translates to: VWRWSGQEAFASHPARRLQDLPQ*KQCLQS Trigger: TGACTGGAGGCATTGTTTTCATTGTGGCAGGTCTTG...CAGCCTGCGGGCAGGGTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTCCAAAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR GCA 90 bp | CTATACATGATGTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACCCTGACTGAGGGATGGCAGTaGTCGCTATCAGGCCCACCC | + |
|
Preference number: 4 (lower is better) Translates to: LYMMFGGGVARRPLPPTLTEGWQ*SLSGPP Trigger: GGGTGGGCCTGATAGCGAGCACTGCCATCCCTCAGT...CAGGGTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTCCAAACATCATGTATAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018713.13 ENSMUST00000108597.8 |
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| CDS-3UTR GCA 90 bp | ACTATACATGATGTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACCCTGGGGTAAGAGCGGGGTaGTCGGTACGCAGCTTTGCT | + |
|
Preference number: 4 (lower is better) Translates to: TIHDVWRWSGQEAFASHPGVRAG*SVRSFA Trigger: AGCAAAGCTGCGTACCGAGCACCCCGCTCTTACCCC...AGGGTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTCCAAACATCATGTATAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR TCA 90 bp | CTATACATGATGTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACCCTGGCCAAGCATGGCCATTaGAAAGCCCAGCAGTTGCAG | + |
|
Preference number: 4 (lower is better) Translates to: LYMMFGGGVARRPLPPTLAKHGH*KAQQLQ Trigger: CTGCAACTGCTGGGCTTTTCAATGGCCATGCTTGGC...CAGGGTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTCCAAACATCATGTATAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018713.13 ENSMUST00000108597.8 |
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| CDS-3UTR GCA 90 bp | AGCAAACTATACATGATGTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCGGGGTAAGAGCGGGGTaGTCGGTACGCAGCTTTGCT | + |
|
Preference number: 4 (lower is better) Translates to: SKLYMMFGGGVARRPLPPGVRAG*SVRSFA Trigger: AGCAAAGCTGCGTACCGAGCACCCCGCTCTTACCCC...GGGAGGCAAAGGCCTCCTGGCCACTCCACCTCCAAACATCATGTATAGTTTGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR GCA 90 bp | CTATACATGATGTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACCCTGAGCGTGTGCACTTCATaGCCATCGTGGCGACAAACA | + |
|
Preference number: 4 (lower is better) Translates to: LYMMFGGGVARRPLPPTLSVCTS*PSWRQT Trigger: TGTTTGTCGCCACGATGGGCATGAAGTGCACACGCT...CAGGGTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTCCAAACATCATGTATAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR GCA 90 bp | CCCAAGCAAACTATACATGATGTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCGACCAGAGCAGACCCTaGCCAGCCGATAAAGATGGC | + |
|
Preference number: 4 (lower is better) Translates to: PKQTIHDVWRWSGQEAFADQSRP*PADKDG Trigger: GCCATCTTTATCGGCTGGGCAGGGTCTGCTCTGGTC...GGCAAAGGCCTCCTGGCCACTCCACCTCCAAACATCATGTATAGTTTGCTTGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR GCA 90 bp | ACTATACATGATGTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACCCTAGCGTGTGCACTTCATaGCCATCGTGGCGACAAACA | + |
|
Preference number: 4 (lower is better) Translates to: TIHDVWRWSGQEAFASHPSVCTS*PSWRQT Trigger: TGTTTGTCGCCACGATGGGCATGAAGTGCACACGCT...AGGGTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTCCAAACATCATGTATAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR GCA 90 bp | CCAAGCAAACTATACATGATGTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTGACCAGAGCAGACCCTaGCCAGCCGATAAAGATGGC | + |
|
Preference number: 4 (lower is better) Translates to: PSKLYMMFGGGVARRPLPDQSRP*PADKDG Trigger: GCCATCTTTATCGGCTGGGCAGGGTCTGCTCTGGTC...AGGCAAAGGCCTCCTGGCCACTCCACCTCCAAACATCATGTATAGTTTGCTTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR GCA 90 bp | CCCCCAAGCAAACTATACATGATGTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCTCGGTACGCAGCTTTaGTTTCACTGCCTGGACAGG | + |
|
Preference number: 4 (lower is better) Translates to: PPSKLYMMFGGGVARRPLLGTQL*FHCLDR Trigger: CCTGTCCAGGCAGTGAAAGCAAAGCTGCGTACCGAG...CAAAGGCCTCCTGGCCACTCCACCTCCAAACATCATGTATAGTTTGCTTGGGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR CCA 90 bp | AAACTATACATGATGTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACCTGGAGGAATTGGACTTaGGGTAAGAGCGGGGTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: KLYMMFGGGVARRPLPPTWRNWT*GKSGVL Trigger: GAGCACCCCGCTCTTACCCCAAGTCCAATTCCTCCA...GGTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTCCAAACATCATGTATAGTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR CCA 90 bp | CCCAAGCAAACTATACATGATGTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTGGAGGAATTGGACTTaGGGTAAGAGCGGGGTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: PKQTIHDVWRWSGQEAFAWRNWT*GKSGVL Trigger: GAGCACCCCGCTCTTACCCCAAGTCCAATTCCTCCA...GGCAAAGGCCTCCTGGCCACTCCACCTCCAAACATCATGTATAGTTTGCTTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR GCA 90 bp | AAGCAAACTATACATGATGTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCTCGGTACGCAGCTTTaGTTTCACTGCCTGGACAGG | + |
|
Preference number: 4 (lower is better) Translates to: KQTIHDVWRWSGQEAFASLGTQL*FHCLDR Trigger: CCTGTCCAGGCAGTGAAAGCAAAGCTGCGTACCGAG...GGAGGCAAAGGCCTCCTGGCCACTCCACCTCCAAACATCATGTATAGTTTGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR CCA 90 bp | CCAAGCAAACTATACATGATGTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCACCCAGCCAAGCATaGCCATTGAAAAGCCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: PSKLYMMFGGGVARRPLPPPSQA*PLKSPA Trigger: TGCTGGGCTTTTCAATGGCCATGCTTGGCTGGGTGG...AGGCAAAGGCCTCCTGGCCACTCCACCTCCAAACATCATGTATAGTTTGCTTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018713.13 ENSMUST00000108597.8 |
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| CDS-3UTR CCA 90 bp | AAGCAAACTATACATGATGTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCTGGAGGAATTGGACTTaGGGTAAGAGCGGGGTGCTC | + |
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Preference number: 4 (lower is better) Translates to: KQTIHDVWRWSGQEAFASWRNWT*GKSGVL Trigger: GAGCACCCCGCTCTTACCCCAAGTCCAATTCCTCCA...GGAGGCAAAGGCCTCCTGGCCACTCCACCTCCAAACATCATGTATAGTTTGCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR CCA 90 bp | CAAACTATACATGATGTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACTCGTGGCGACAAACATaGCTAAGAAGCCCAACACCA | + |
|
Preference number: 4 (lower is better) Translates to: QTIHDVWRWSGQEAFASHSWRQT*LRSPTP Trigger: TGGTGTTGGGCTTCTTAGCCATGTTTGTCGCCACGA...GTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTCCAAACATCATGTATAGTTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR CCA 90 bp | CCCAAGCAAACTATACATGATGTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTTTGCTTTCACTGCCTaGACAGGAGCAAGAGAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: PKQTIHDVWRWSGQEAFAFAFTA*TGAREQ Trigger: CTGCTCTCTTGCTCCTGTCCAGGCAGTGAAAGCAAA...GGCAAAGGCCTCCTGGCCACTCCACCTCCAAACATCATGTATAGTTTGCTTGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR CCA 90 bp | AAACTATACATGATGTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACCTTTGCTTTCACTGCCTaGACAGGAGCAAGAGAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: KLYMMFGGGVARRPLPPTFAFTA*TGAREQ Trigger: CTGCTCTCTTGCTCCTGTCCAGGCAGTGAAAGCAAA...GGTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTCCAAACATCATGTATAGTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR TCA 90 bp | CCCAAGCAAACTATACATGATGTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCCAAGACCTGCCACAATaGAAACAATGCCTCCAGTCA | + |
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Preference number: 4 (lower is better) Translates to: PKQTIHDVWRWSGQEAFAQDLPQ*KQCLQS Trigger: TGACTGGAGGCATTGTTTTCATTGTGGCAGGTCTTG...GGCAAAGGCCTCCTGGCCACTCCACCTCCAAACATCATGTATAGTTTGCTTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR CCA 90 bp | AAGCAAACTATACATGATGTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCTTTGCTTTCACTGCCTaGACAGGAGCAAGAGAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: KQTIHDVWRWSGQEAFASFAFTA*TGAREQ Trigger: CTGCTCTCTTGCTCCTGTCCAGGCAGTGAAAGCAAA...GGAGGCAAAGGCCTCCTGGCCACTCCACCTCCAAACATCATGTATAGTTTGCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR TCA 90 bp | CTATACATGATGTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACCCTGGGTTATAAAAGTCTGTaGCAATCTGATGACCAATCC | + |
|
Preference number: 4 (lower is better) Translates to: LYMMFGGGVARRPLPPTLGYKSL*QSDDQS Trigger: GGATTGGTCATCAGATTGTCACAGACTTTTATAACC...CAGGGTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTCCAAACATCATGTATAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR TCA 90 bp | ACTATACATGATGTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACCCTGGTTATAAAAGTCTGTaGCAATCTGATGACCAATCC | + |
|
Preference number: 4 (lower is better) Translates to: TIHDVWRWSGQEAFASHPGYKSL*QSDDQS Trigger: GGATTGGTCATCAGATTGTCACAGACTTTTATAACC...AGGGTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTCCAAACATCATGTATAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR TCA 90 bp | AGCAAACTATACATGATGTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCGGTTATAAAAGTCTGTaGCAATCTGATGACCAATCC | + |
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Preference number: 4 (lower is better) Translates to: SKLYMMFGGGVARRPLPPGYKSL*QSDDQS Trigger: GGATTGGTCATCAGATTGTCACAGACTTTTATAACC...GGGAGGCAAAGGCCTCCTGGCCACTCCACCTCCAAACATCATGTATAGTTTGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR CAA 90 bp | GAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACCCTGCCCGCAGGCTGGGCTCCGGGCCTTCTTCGCTTaGTCATCTCCCCCACAGCGT | + |
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Preference number: 5 (lower is better) Translates to: EVEWPGGLCLPPCPQAGLRAFFA*SSPPQR Trigger: ACGCTGTGGGGGAGATGACAAAGCGAAGAAGGCCCG...GAGCCCAGCCTGCGGGCAGGGTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR CAA 90 bp | TGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACCCTGCCCGCAGGCTGGGCCGGGCCTTCTTCGCTTaGTCATCTCCCCCACAGCGT | + |
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Preference number: 5 (lower is better) Translates to: WRWSGQEAFASHPARRLGRAFFA*SSPPQR Trigger: ACGCTGTGGGGGAGATGACAAAGCGAAGAAGGCCCG...GCCCAGCCTGCGGGCAGGGTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTCCA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR CAA 90 bp | GTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACCCTGCCCGCAGGCTGCGGGCCTTCTTCGCTTaGTCATCTCCCCCACAGCGT | + |
|
Preference number: 5 (lower is better) Translates to: VWRWSGQEAFASHPARRLRAFFA*SSPPQR Trigger: ACGCTGTGGGGGAGATGACAAAGCGAAGAAGGCCCG...CAGCCTGCGGGCAGGGTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTCCAAAC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR CAA 90 bp | TTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACCCTGCCCGCAGGCTGGGGCTCGGTACGCAGCTTaGCTTTCACTGCCTGGACAG | + |
|
Preference number: 5 (lower is better) Translates to: LEVEWPGGLCLPPCPQAGARYAA*LSLPGQ Trigger: CTGTCCAGGCAGTGAAAGCAAAGCTGCGTACCGAGC...CCCAGCCTGCGGGCAGGGTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTCCAA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR CAA 90 bp | GTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACCCTGCCCGCAGGCTGGCTCGGTACGCAGCTTaGCTTTCACTGCCTGGACAG | + |
|
Preference number: 5 (lower is better) Translates to: VWRWSGQEAFASHPARRLARYAA*LSLPGQ Trigger: CTGTCCAGGCAGTGAAAGCAAAGCTGCGTACCGAGC...CAGCCTGCGGGCAGGGTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTCCAAAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS GCA 90 bp | AGGAATTGGACTTGGGGTAAGAGCGGGGTGCTCGGTACGCAGCTTTaGTTTCACTGCCTGGACAGGAGCAAGAGAGCAGGGCACCTCCCA | + |
|
Preference number: 5 (lower is better) Translates to: RNWTWGKSGVLGTQL*FHCLDRSKRAGHLP Trigger: TGGGAGGTGCCCTGCTCTCTTGCTCCTGTCCAGGCAGTGAAAGCAAAGCTGCGTACCGAGCACCCCGCTCTTACCCCAAGTCCAATTCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS GCA 90 bp | GGGCCTTCTTCGCTTTGTCATCTCCCCCACAGCGTGTGCACTTCATaGCCATCGTGGCGACAAACATGGCTAAGAAGCCCAACACCAGGG | + |
|
Preference number: 5 (lower is better) Translates to: GPSSLCHLPHSVCTS*PSWRQTWLRSPTPG Trigger: CCCTGGTGTTGGGCTTCTTAGCCATGTTTGTCGCCACGATGGGCATGAAGTGCACACGCTGTGGGGGAGATGACAAAGCGAAGAAGGCCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 ENSMUST00000151515.2 |
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| CDS-3UTR CAA 90 bp | CTATACATGATGTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACCCTGGCTCGGTACGCAGCTTaGCTTTCACTGCCTGGACAG | + |
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Preference number: 5 (lower is better) Translates to: LYMMFGGGVARRPLPPTLARYAA*LSLPGQ Trigger: CTGTCCAGGCAGTGAAAGCAAAGCTGCGTACCGAGC...CAGGGTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTCCAAACATCATGTATAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS GCA 90 bp | TCACACGTATTCCTTGGAGGAATTGGACTTGGGGTAAGAGCGGGGTaGTCGGTACGCAGCTTTGCTTTCACTGCCTGGACAGGAGCAAGA | + |
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Preference number: 5 (lower is better) Translates to: SHVFLGGIGLGVRAG*SVRSFAFTAWTGAR Trigger: TCTTGCTCCTGTCCAGGCAGTGAAAGCAAAGCTGCGTACCGAGCACCCCGCTCTTACCCCAAGTCCAATTCCTCCAAGGAATACGTGTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS-3UTR CAA 90 bp | CAAACTATACATGATGTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTCCCACACCGAGTCGTACATTTaGCAGCTCATCATGCCGGTG | + |
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Preference number: 5 (lower is better) Translates to: QTIHDVWRWSGQEAFASHTESYI*QLIMPV Trigger: CACCGGCATGATGAGCTGCAAAATGTACGACTCGGT...GTGGGAGGCAAAGGCCTCCTGGCCACTCCACCTCCAAACATCATGTATAGTTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018713.13 ENSMUST00000108597.8 |
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| CDS-3UTR CAA 90 bp | CCAAGCAAACTATACATGATGTTTGGAGGTGGAGTGGCCAGGAGGCCTTTGCCTACCGAGTCGTACATTTaGCAGCTCATCATGCCGGTG | + |
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Preference number: 5 (lower is better) Translates to: PSKLYMMFGGGVARRPLPTESYI*QLIMPV Trigger: CACCGGCATGATGAGCTGCAAAATGTACGACTCGGT...AGGCAAAGGCCTCCTGGCCACTCCACCTCCAAACATCATGTATAGTTTGCTTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018713.13 ENSMUST00000108597.8 |
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| CDS CCA 72 bp | AGCCCAACACCAGGGACACCACCATTAAGGCTCGAGTaGCCTGCAGGGCTCCCGGCAGGGCGAGCACCGAGT | + |
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Preference number: 6 (lower is better) Translates to: SPTPGTPPLRLE*PAGLPAGRAPS Trigger: ACTCGGTGCTCGCCCTGCCGGGAGCCCTGCAGGCCACTCGAGCCTTAATGGTGGTGTCCCTGGTGTTGGGCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018713.13 ENSMUST00000108597.8 |
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| CDS GCA 72 bp | AAGAGCGGGGTGCTCGGTACGCAGCTTTGCTTTCACTaGCTGGACAGGAGCAAGAGAGCAGGGCACCTCCCA | + |
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Preference number: 6 (lower is better) Translates to: KSGVLGTQLCFH*LDRSKRAGHLP Trigger: TGGGAGGTGCCCTGCTCTCTTGCTCCTGTCCAGGCAGTGAAAGCAAAGCTGCGTACCGAGCACCCCGCTCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS GCA 72 bp | ACTTGGGGTAAGAGCGGGGTGCTCGGTACGCAGCTTTaGTTTCACTGCCTGGACAGGAGCAAGAGAGCAGGG | + |
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Preference number: 6 (lower is better) Translates to: TWGKSGVLGTQL*FHCLDRSKRAG Trigger: CCCTGCTCTCTTGCTCCTGTCCAGGCAGTGAAAGCAAAGCTGCGTACCGAGCACCCCGCTCTTACCCCAAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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| CDS GCA 72 bp | TTCCTTGGAGGAATTGGACTTGGGGTAAGAGCGGGGTaGTCGGTACGCAGCTTTGCTTTCACTGCCTGGACA | + |
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Preference number: 6 (lower is better) Translates to: FLGGIGLGVRAG*SVRSFAFTAWT Trigger: TGTCCAGGCAGTGAAAGCAAAGCTGCGTACCGAGCACCCCGCTCTTACCCCAAGTCCAATTCCTCCAAGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018713.13 ENSMUST00000108596.8 ENSMUST00000108597.8 |
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