Pregenerated sensors for CLDN6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023906Ensembl transcript IDs: ENSMUST00000024699.4, ENSMUST00000232719.2, ENSMUST00000233364.2
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCACCTGCCCTTCCAGGGCTGGAGAGAAGTCTGACCAGGAAGGGGTaGGTCTGTCCTGTGAGTTACCTCCGGCCACAGCAGGAACTCTTG | + |
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Preference number: 1 (lower is better) Translates to: SPALPGLERSLTRKG*VCPVSYLRPQQELL Trigger: CAAGAGTTCCTGCTGTGGCCGGAGGTAACTCACAGGACAGACGCACCCCTTCCTGGTCAGACTTCTCTCCAGCCCTGGAAGGGCAGGTGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 |
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| 3UTR TCA 90 bp | GAGAAATGCCAGCAGCAGAGAGAGAGGTGGAGCTTGGACTCAGGTTaGGGCAGGAAAACTGGAGCTGGAGGTCGATCAGAGCTCCATGAG | + |
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Preference number: 1 (lower is better) Translates to: EKCQQQRERWSLDSG*GRKTGAGGRSELHE Trigger: CTCATGGAGCTCTGATCGACCTCCAGCTCCAGTTTTCCTGCCTCAACCTGAGTCCAAGCTCCACCTCTCTCTCTGCTGCTGGCATTTCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 |
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| 3UTR TCA 90 bp | AGGTTGAGGCAGGAAAACTGGAGCTGGAGGTCGATCAGAGCTCCATaGGAAGAGCTTGTCTCAAAAACAGGTGGAACAAACCCTAGGGAC | + |
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Preference number: 1 (lower is better) Translates to: RLRQENWSWRSIRAP*EELVSKTGGTNPRD Trigger: GTCCCTAGGGTTTGTTCCACCTGTTTTTGAGACAAGCTCTTCTCATGGAGCTCTGATCGACCTCCAGCTCCAGTTTTCCTGCCTCAACCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 |
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| 3UTR-3UTR GCA 90 bp | GCCCTTCCAGGGCTGGAGAGAAGTCTGACCAGGAAGGGGTGCGTCTGTCCTGTGGCTAAAAGTGAGAAATaGCAGCAGCAGAGAGAGAGG | + |
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Preference number: 2 (lower is better) Translates to: ALPGLERSLTRKGCVCPVAKSEK*QQQRER Trigger: CCTCTCTCTCTGCTGCTGGCATTTCTCACTTTTAGC...CACAGGACAGACGCACCCCTTCCTGGTCAGACTTCTCTCCAGCCCTGGAAGGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 |
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| 3UTR-3UTR GCA 90 bp | TGCCCTTCCAGGGCTGGAGAGAAGTCTGACCAGGAAGGGGTGCGTCTGTCCTGTGCTAAAAGTGAGAAATaGCAGCAGCAGAGAGAGAGG | + |
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Preference number: 2 (lower is better) Translates to: CPSRAGEKSDQEGVRLSCAKSEK*QQQRER Trigger: CCTCTCTCTCTGCTGCTGGCATTTCTCACTTTTAGC...ACAGGACAGACGCACCCCTTCCTGGTCAGACTTCTCTCCAGCCCTGGAAGGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 |
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| 3UTR-3UTR TCA 90 bp | GTGGAACAAACCCTAGGGACAGACAGGGCACCACATGACTCACTGGTGAGTGCTCTCCGTAACCTTTCTTaGTGGCTCAGCTCAGGTTCC | + |
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Preference number: 2 (lower is better) Translates to: VEQTLGTDRAPHDSLVSALRNLS*WLSSGS Trigger: GGAACCTGAGCTGAGCCATCAAGAAAGGTTACGGAG...AGCACTCACCAGTGAGTCATGTGGTGCCCTGTCTGTCCCTAGGGTTTGTTCCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 ENSMUST00000233364.2 |
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| 3UTR-3UTR TCA 90 bp | ACAGACAGGGCACCACATGACTCACTGGTGAGTGCTTGCCTACCAAATGCGTGGCTCCGTAACCTTTCTTaGTGGCTCAGCTCAGGTTCC | + |
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Preference number: 2 (lower is better) Translates to: TDRAPHDSLVSACLPNAWLRNLS*WLSSGS Trigger: GGAACCTGAGCTGAGCCATCAAGAAAGGTTACGGAG...CCACGCATTTGGTAGGCAAGCACTCACCAGTGAGTCATGTGGTGCCCTGTCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 ENSMUST00000233364.2 |
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| 3UTR-3UTR CCA 90 bp | AGGGCTGGAGAGAAGTCTGACCAGGAAGGGGTGCGTCTGTCCTGTGAGTTACCTTTGAGGCAGGAAAACTaGAGCTGGAGGTCGATCAGA | + |
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Preference number: 2 (lower is better) Translates to: RAGEKSDQEGVRLSCELPLRQEN*SWRSIR Trigger: TCTGATCGACCTCCAGCTCCAGTTTTCCTGCCTCAA...AGGTAACTCACAGGACAGACGCACCCCTTCCTGGTCAGACTTCTCTCCAGCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 |
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| 3UTR-3UTR GCA 90 bp | TCTCAGGGTAGAAAATTCCTTGGTAACTTATCACCTGCCCTTCCAGGGCTGGAGCTGACCAGGAAGGGGTaGGTCTGTCCTGTGAGTTAC | + |
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Preference number: 2 (lower is better) Translates to: SQGRKFLGNLSPALPGLELTRKG*VCPVSY Trigger: GTAACTCACAGGACAGACGCACCCCTTCCTGGTCAG...CTCCAGCCCTGGAAGGGCAGGTGATAAGTTACCAAGGAATTTTCTACCCTGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 |
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| 3UTR CAA 90 bp | AGGAAAACTGGAGCTGGAGGTCGATCAGAGCTCCATGAGAAGAGCTaGTCTCAAAAACAGGTGGAACAAACCCTAGGGACAGACAGGGCA | + |
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Preference number: 2 (lower is better) Translates to: RKTGAGGRSELHEKS*SQKQVEQTLGTDRA Trigger: TGCCCTGTCTGTCCCTAGGGTTTGTTCCACCTGTTTTTGAGACAAGCTCTTCTCATGGAGCTCTGATCGACCTCCAGCTCCAGTTTTCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 |
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| 3UTR-3UTR CCA 90 bp | ACGCAGAAACTCAAGTGTCCCATCCTCCCAGCCTCAGTAGCTAAAAGTGAGAAAGAGAGAGGTGGAGCTTaGACTCAGGTTGAGGCAGGA | + |
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Preference number: 2 (lower is better) Translates to: TQKLKCPILPASVAKSEKERGGA*TQVEAG Trigger: TCCTGCCTCAACCTGAGTCCAAGCTCCACCTCTCTC...TTTCTCACTTTTAGCTACTGAGGCTGGGAGGATGGGACACTTGAGTTTCTGCGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 |
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| 3UTR-3UTR TCA 90 bp | ACGCAGAAACTCAAGTGTCCCATCCTCCCAGCCTCAGTAGCTAAAAGTGAGAAACTCCGTAACCTTTCTTaGTGGCTCAGCTCAGGTTCC | + |
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Preference number: 2 (lower is better) Translates to: TQKLKCPILPASVAKSEKLRNLS*WLSSGS Trigger: GGAACCTGAGCTGAGCCATCAAGAAAGGTTACGGAG...TTTCTCACTTTTAGCTACTGAGGCTGGGAGGATGGGACACTTGAGTTTCTGCGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 |
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| 3UTR-3UTR TCA 90 bp | GGGACAGGATATTTTGAGAAAAACAAAGGCCAGGCAGCCTTAGAACACTGCACAAGACAGGGCACCACATaGCTCACTGGTGAGTGCTTG | + |
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Preference number: 2 (lower is better) Translates to: GTGYFEKNKGQAALEHCTRQGTT*LTGECL Trigger: CAAGCACTCACCAGTGAGTCATGTGGTGCCCTGTCT...TGTGCAGTGTTCTAAGGCTGCCTGGCCTTTGTTTTTCTCAAAATATCCTGTCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 |
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| 3UTR-3UTR CCA 90 bp | GGGACAGGATATTTTGAGAAAAACAAAGGCCAGGCAGCCTTAGAACACTGCACAGAGAGAGGTGGAGCTTaGACTCAGGTTGAGGCAGGA | + |
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Preference number: 2 (lower is better) Translates to: GTGYFEKNKGQAALEHCTERGGA*TQVEAG Trigger: TCCTGCCTCAACCTGAGTCCAAGCTCCACCTCTCTC...TGTGCAGTGTTCTAAGGCTGCCTGGCCTTTGTTTTTCTCAAAATATCCTGTCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 |
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| 3UTR-3UTR GCA 90 bp | TCTCAGGGTAGAAAATTCCTTGGTAACTTATCACCTGCCCTTCCAGGGCTGGAGGCAGCCTTAGAACACTaGACAGAAGATCCCCAGAAT | + |
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Preference number: 2 (lower is better) Translates to: SQGRKFLGNLSPALPGLEAALEH*TEDPQN Trigger: ATTCTGGGGATCTTCTGTGCAGTGTTCTAAGGCTGC...CTCCAGCCCTGGAAGGGCAGGTGATAAGTTACCAAGGAATTTTCTACCCTGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 |
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| 3UTR-3UTR CCA 90 bp | AAGATCCCCAGAATGAATAATGACGCAGAAACTCAAGTGTCCCATCCTCCCAGCTTGAGGCAGGAAAACTaGAGCTGGAGGTCGATCAGA | + |
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Preference number: 2 (lower is better) Translates to: KIPRMNNDAETQVSHPPSLRQEN*SWRSIR Trigger: TCTGATCGACCTCCAGCTCCAGTTTTCCTGCCTCAA...GCTGGGAGGATGGGACACTTGAGTTTCTGCGTCATTATTCATTCTGGGGATCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 |
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| 3UTR-3UTR TCA 90 bp | GGATATTTTGAGAAAAACAAAGGCCAGGCAGCCTTAGAACACTGCACAGAAGATCACATGACTCACTGGTaGGTGCTTGCCTACCAAATG | + |
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Preference number: 2 (lower is better) Translates to: GYFEKNKGQAALEHCTEDHMTHW*VLAYQM Trigger: CATTTGGTAGGCAAGCACTCACCAGTGAGTCATGTG...ATCTTCTGTGCAGTGTTCTAAGGCTGCCTGGCCTTTGTTTTTCTCAAAATATCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 |
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| 3UTR GCA 72 bp | CTTCCAGGGCTGGAGAGAAGTCTGACCAGGAAGGGGTaGGTCTGTCCTGTGAGTTACCTCCGGCCACAGCAG | + |
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Preference number: 3 (lower is better) Translates to: LPGLERSLTRKG*VCPVSYLRPQQ Trigger: CTGCTGTGGCCGGAGGTAACTCACAGGACAGACGCACCCCTTCCTGGTCAGACTTCTCTCCAGCCCTGGAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 |
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| 3UTR TCA 72 bp | GGTGGAACAAACCCTAGGGACAGACAGGGCACCACATaGCTCACTGGTGAGTGCTTGCCTACCAAATGCGTG | + |
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Preference number: 3 (lower is better) Translates to: GGTNPRDRQGTT*LTGECLPTKCV Trigger: CACGCATTTGGTAGGCAAGCACTCACCAGTGAGTCATGTGGTGCCCTGTCTGTCCCTAGGGTTTGTTCCACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 ENSMUST00000233364.2 |
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| 3UTR CCA 72 bp | GTGAGAAATGCCAGCAGCAGAGAGAGAGGTGGAGCTTaGACTCAGGTTGAGGCAGGAAAACTGGAGCTGGAG | + |
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Preference number: 3 (lower is better) Translates to: VRNASSRERGGA*TQVEAGKLELE Trigger: CTCCAGCTCCAGTTTTCCTGCCTCAACCTGAGTCCAAGCTCCACCTCTCTCTCTGCTGCTGGCATTTCTCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 |
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| 3UTR TCA 72 bp | AATAAGACAACCCCCAAACTACTCCGTAACCTTTCTTaGTGGCTCAGCTCAGGTTCCCTGGCTAGCAGAGCC | + |
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Preference number: 3 (lower is better) Translates to: NKTTPKLLRNLS*WLSSGSLASRA Trigger: GGCTCTGCTAGCCAGGGAACCTGAGCTGAGCCATCAAGAAAGGTTACGGAGTAGTTTGGGGGTTGTCTTATT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 ENSMUST00000233364.2 |
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| 3UTR TCA 72 bp | CAGGAAAACTGGAGCTGGAGGTCGATCAGAGCTCCATaGGAAGAGCTTGTCTCAAAAACAGGTGGAACAAAC | + |
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Preference number: 3 (lower is better) Translates to: QENWSWRSIRAP*EELVSKTGGTN Trigger: GTTTGTTCCACCTGTTTTTGAGACAAGCTCTTCTCATGGAGCTCTGATCGACCTCCAGCTCCAGTTTTCCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 |
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| CDS-3UTR TCA 90 bp | GACAGGGCACCACATGACTCACTGGTGAGTGCTTGCCTACCAAATGCGTGGGGCTCCAGCAGACAGGAATaGGCGTCAGGACCCCAGAAA | + |
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Preference number: 4 (lower is better) Translates to: DRAPHDSLVSACLPNAWGSSRQE*ASGPQK Trigger: TTTCTGGGGTCCTGACGCTCATTCCTGTCTGCTGGA...GCCCCACGCATTTGGTAGGCAAGCACTCACCAGTGAGTCATGTGGTGCCCTGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 ENSMUST00000233364.2 |
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| CDS-3UTR CCA 90 bp | TGCCCTTCCAGGGCTGGAGAGAAGTCTGACCAGGAAGGGGTGCGTCTGTCCTGTTCCTGGATGATAGAGTaGGCAGTCCAGCAGACAGGA | + |
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Preference number: 4 (lower is better) Translates to: CPSRAGEKSDQEGVRLSCSWMIE*AVQQTG Trigger: TCCTGTCTGCTGGACTGCCCACTCTATCATCCAGGA...ACAGGACAGACGCACCCCTTCCTGGTCAGACTTCTCTCCAGCCCTGGAAGGGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 |
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| CDS-3UTR CCA 90 bp | TGTGCAAGGTGTGGGGGAGGAGGGTCTACAGCACAGCTGGGACCTTTTGTAGGGTCCTGGATGATAGAGTaGGCAGTCCAGCAGACAGGA | + |
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Preference number: 4 (lower is better) Translates to: CARCGGGGSTAQLGPFVGSWMIE*AVQQTG Trigger: TCCTGTCTGCTGGACTGCCCACTCTATCATCCAGGA...CCCTACAAAAGGTCCCAGCTGTGCTGTAGACCCTCCTCCCCCACACCTTGCACA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 |
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| CDS-3UTR TCA 90 bp | CATGACTCACTGGTGAGTGCTTGCCTACCAAATGCGTGGGGCCCCAGGTTCAATTCCAGCAGACAGGAATaGGCGTCAGGACCCCAGAAA | + |
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Preference number: 4 (lower is better) Translates to: HDSLVSACLPNAWGPRFNSSRQE*ASGPQK Trigger: TTTCTGGGGTCCTGACGCTCATTCCTGTCTGCTGGA...ATTGAACCTGGGGCCCCACGCATTTGGTAGGCAAGCACTCACCAGTGAGTCATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 ENSMUST00000233364.2 |
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| CDS-3UTR CCA 90 bp | TCACTGGTGAGTGCTTGCCTACCAAATGCGTGGGGCCCCAGGTTCAATACCCAGTCCTGGATGATAGAGTaGGCAGTCCAGCAGACAGGA | + |
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Preference number: 4 (lower is better) Translates to: SLVSACLPNAWGPRFNTQSWMIE*AVQQTG Trigger: TCCTGTCTGCTGGACTGCCCACTCTATCATCCAGGA...CTGGGTATTGAACCTGGGGCCCCACGCATTTGGTAGGCAAGCACTCACCAGTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 ENSMUST00000233364.2 |
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| CDS-3UTR TCA 90 bp | CTCCATGAGAAGAGCTTGTCTCAAAAACAGGTGGAACAAACCCTAGGGACAGACTCCAGCAGACAGGAATaGGCGTCAGGACCCCAGAAA | + |
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Preference number: 4 (lower is better) Translates to: LHEKSLSQKQVEQTLGTDSSRQE*ASGPQK Trigger: TTTCTGGGGTCCTGACGCTCATTCCTGTCTGCTGGA...GTCTGTCCCTAGGGTTTGTTCCACCTGTTTTTGAGACAAGCTCTTCTCATGGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 ENSMUST00000233364.2 |
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| 3UTR CAA 72 bp | GGGCCAAAGGTTGGAAGTCTCAGGGTAGAAAATTCCTaGGTAACTTATCACCTGCCCTTCCAGGGCTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: GPKVGSLRVENS*VTYHLPFQGWR Trigger: TCTCCAGCCCTGGAAGGGCAGGTGATAAGTTACCAAGGAATTTTCTACCCTGAGACTTCCAACCTTTGGCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 |
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| CDS-3UTR CAA 90 bp | TGTGCAAGGTGTGGGGGAGGAGGGTCTACAGCACAGCTGGGACCTTTTGTAGGGCAGGACACCAGGGCGTaGACCCAGCCAAGCAGGGTC | + |
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Preference number: 5 (lower is better) Translates to: CARCGGGGSTAQLGPFVGQDTRA*TQPSRV Trigger: GACCCTGCTTGGCTGGGTCAACGCCCTGGTGTCCTG...CCCTACAAAAGGTCCCAGCTGTGCTGTAGACCCTCCTCCCCCACACCTTGCACA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 |
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| CDS-3UTR CAA 90 bp | CATGACTCACTGGTGAGTGCTTGCCTACCAAATGCGTGGGGCCCCAGGTTCAATCAGGACACCAGGGCGTaGACCCAGCCAAGCAGGGTC | + |
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Preference number: 5 (lower is better) Translates to: HDSLVSACLPNAWGPRFNQDTRA*TQPSRV Trigger: GACCCTGCTTGGCTGGGTCAACGCCCTGGTGTCCTG...ATTGAACCTGGGGCCCCACGCATTTGGTAGGCAAGCACTCACCAGTGAGTCATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 ENSMUST00000233364.2 |
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| CDS-3UTR CAA 90 bp | TCACTGGTGAGTGCTTGCCTACCAAATGCGTGGGGCCCCAGGTTCAATACCCAGACACAGGTAGTGCACTaGGCTCCAGCCAGGTACACG | + |
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Preference number: 5 (lower is better) Translates to: SLVSACLPNAWGPRFNTQTQVVH*APARYT Trigger: CGTGTACCTGGCTGGAGCCAAGTGCACTACCTGTGT...CTGGGTATTGAACCTGGGGCCCCACGCATTTGGTAGGCAAGCACTCACCAGTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 ENSMUST00000233364.2 |
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| CDS-3UTR CAA 90 bp | GACAGGGCACCACATGACTCACTGGTGAGTGCTTGCCTACCAAATGCGTGGGGCGACGATCCCCAAGATTaGCAGACCAGTAGAGGCCAT | + |
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Preference number: 5 (lower is better) Translates to: DRAPHDSLVSACLPNAWGDDPQD*QTSRGH Trigger: ATGGCCTCTACTGGTCTGCAAATCTTGGGGATCGTC...GCCCCACGCATTTGGTAGGCAAGCACTCACCAGTGAGTCATGTGGTGCCCTGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 ENSMUST00000233364.2 |
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| CDS-3UTR CAA 90 bp | GAAGAGCTTGTCTCAAAAACAGGTGGAACAAACCCTAGGGACAGACAGGGCACCGCCACGACGATGCTGTaGCCGATGAAGGCGGTCACC | + |
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Preference number: 5 (lower is better) Translates to: EELVSKTGGTNPRDRQGTATTML*PMKAVT Trigger: GGTGACCGCCTTCATCGGCAACAGCATCGTCGTGGC...GGTGCCCTGTCTGTCCCTAGGGTTTGTTCCACCTGTTTTTGAGACAAGCTCTTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 ENSMUST00000233364.2 |
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| CDS-3UTR CAA 90 bp | GGGACAGGATATTTTGAGAAAAACAAAGGCCAGGCAGCCTTAGAACACTGCACAGCCACGACGATGCTGTaGCCGATGAAGGCGGTCACC | + |
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Preference number: 5 (lower is better) Translates to: GTGYFEKNKGQAALEHCTATTML*PMKAVT Trigger: GGTGACCGCCTTCATCGGCAACAGCATCGTCGTGGC...TGTGCAGTGTTCTAAGGCTGCCTGGCCTTTGTTTTTCTCAAAATATCCTGTCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 |
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| CDS-3UTR CAA 90 bp | GAAGAGCTTGTCTCAAAAACAGGTGGAACAAACCCTAGGGACAGACAGGGCACCGACGATCCCCAAGATTaGCAGACCAGTAGAGGCCAT | + |
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Preference number: 5 (lower is better) Translates to: EELVSKTGGTNPRDRQGTDDPQD*QTSRGH Trigger: ATGGCCTCTACTGGTCTGCAAATCTTGGGGATCGTC...GGTGCCCTGTCTGTCCCTAGGGTTTGTTCCACCTGTTTTTGAGACAAGCTCTTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 ENSMUST00000233364.2 |
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| CDS-3UTR CAA 90 bp | AAACTGGAGCTGGAGGTCGATCAGAGCTCCATGAGAAGAGCTTGTCTCAAAAACACACAGGTAGTGCACTaGGCTCCAGCCAGGTACACG | + |
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Preference number: 5 (lower is better) Translates to: KLELEVDQSSMRRACLKNTQVVH*APARYT Trigger: CGTGTACCTGGCTGGAGCCAAGTGCACTACCTGTGT...GTTTTTGAGACAAGCTCTTCTCATGGAGCTCTGATCGACCTCCAGCTCCAGTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 |
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| CDS-3UTR CAA 90 bp | CTCCATGAGAAGAGCTTGTCTCAAAAACAGGTGGAACAAACCCTAGGGACAGACACACAGGTAGTGCACTaGGCTCCAGCCAGGTACACG | + |
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Preference number: 5 (lower is better) Translates to: LHEKSLSQKQVEQTLGTDTQVVH*APARYT Trigger: CGTGTACCTGGCTGGAGCCAAGTGCACTACCTGTGT...GTCTGTCCCTAGGGTTTGTTCCACCTGTTTTTGAGACAAGCTCTTCTCATGGAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 ENSMUST00000233364.2 |
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| CDS-3UTR CAA 90 bp | AAACTGGAGCTGGAGGTCGATCAGAGCTCCATGAGAAGAGCTTGTCTCAAAAACGACGATCCCCAAGATTaGCAGACCAGTAGAGGCCAT | + |
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Preference number: 5 (lower is better) Translates to: KLELEVDQSSMRRACLKNDDPQD*QTSRGH Trigger: ATGGCCTCTACTGGTCTGCAAATCTTGGGGATCGTC...GTTTTTGAGACAAGCTCTTCTCATGGAGCTCTGATCGACCTCCAGCTCCAGTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024699.4 ENSMUST00000232719.2 |
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