Pregenerated sensors for CLDN5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041378Ensembl transcript IDs: ENSMUST00000043577.3
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GGTACCTACAGGGCCCCCACCTTGGGGGAGTGCTGGAGTGAGACCAGGTCCAGGGTTAGCAGGTGCCACTaGACATTAAGGCAGCATCTA | + |
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Preference number: 2 (lower is better) Translates to: GTYRAPTLGECWSETRSRVSRCH*TLRQHL Trigger: TAGATGCTGCCTTAATGTCCAGTGGCACCTGCTAAC...CCTGGACCTGGTCTCACTCCAGCACTCCCCCAAGGTGGGGGCCCTGTAGGTACC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| 3UTR-3UTR GCA 90 bp | TACAGGGCCCCCACCTTGGGGGAGTGCTGGAGTGAGACCAGGTCCAGGCTAAGTTTTCAGGTTAGCAGGTaGCACTGGACATTAAGGCAG | + |
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Preference number: 2 (lower is better) Translates to: YRAPTLGECWSETRSRLSFQVSR*HWTLRQ Trigger: CTGCCTTAATGTCCAGTGGCACCTGCTAACCTGAAA...ACTTAGCCTGGACCTGGTCTCACTCCAGCACTCCCCCAAGGTGGGGGCCCTGTA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| 3UTR GCA 72 bp | GGCTCTGGTACCTACAGGGCCCCCACCTTGGGGGAGTaGTGGAGTGAGACCAGGTCCAGGCTAAGTCCTTTG | + |
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Preference number: 3 (lower is better) Translates to: GSGTYRAPTLGE*WSETRSRLSPL Trigger: CAAAGGACTTAGCCTGGACCTGGTCTCACTCCAGCACTCCCCCAAGGTGGGGGCCCTGTAGGTACCAGAGCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| 3UTR CCA 72 bp | TTTCTCCAGCTGCCCTTTCAGGTTAGCAGGTGCCACTaGACATTAAGGCAGCATCTAGTGCCCCCAGGATCT | + |
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Preference number: 3 (lower is better) Translates to: FLQLPFQVSRCH*TLRQHLVPPGS Trigger: AGATCCTGGGGGCACTAGATGCTGCCTTAATGTCCAGTGGCACCTGCTAACCTGAAAGGGCAGCTGGAGAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS-3UTR GCA 90 bp | GGTACCTACAGGGCCCCCACCTTGGGGGAGTGCTGGAGTGAGACCAGGTCCAGGACTCAGGGCGCCCGGTaGAGACCCAGGCGCCGCAAC | + |
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Preference number: 4 (lower is better) Translates to: GTYRAPTLGECWSETRSRTQGAR*RPRRRN Trigger: GTTGCGGCGCCTGGGTCTGCACCGGGCGCCCTGAGT...CCTGGACCTGGTCTCACTCCAGCACTCCCCCAAGGTGGGGGCCCTGTAGGTACC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS-3UTR GCA 90 bp | ACCTACAGGGCCCCCACCTTGGGGGAGTGCTGGAGTGAGACCAGGTCCAGGCTAGGGCCACGCAGGTGGTaGACTGAGCGCCGGTCAAGG | + |
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Preference number: 4 (lower is better) Translates to: TYRAPTLGECWSETRSRLGPRRW*TERRSR Trigger: CCTTGACCGGCGCTCAGTGCACCACCTGCGTGGCCC...TAGCCTGGACCTGGTCTCACTCCAGCACTCCCCCAAGGTGGGGGCCCTGTAGGT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS-3UTR GCA 90 bp | TACAGGGCCCCCACCTTGGGGGAGTGCTGGAGTGAGACCAGGTCCAGGCTAAGTGCAGAGCGGCACGAGTaGCAGCAGCCCGCACACCGC | + |
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Preference number: 4 (lower is better) Translates to: YRAPTLGECWSETRSRLSAERHE*QQPAHR Trigger: GCGGTGTGCGGGCTGCTGGCACTCGTGCCGCTCTGC...ACTTAGCCTGGACCTGGTCTCACTCCAGCACTCCCCCAAGGTGGGGGCCCTGTA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS-3UTR CCA 90 bp | TACAGGGCCCCCACCTTGGGGGAGTGCTGGAGTGAGACCAGGTCCAGGCTAAGTCCGGGGCCACGCAGGTaGTGCACTGAGCGCCGGTCA | + |
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Preference number: 4 (lower is better) Translates to: YRAPTLGECWSETRSRLSPGPRR*CTERRS Trigger: TGACCGGCGCTCAGTGCACCACCTGCGTGGCCCCGG...ACTTAGCCTGGACCTGGTCTCACTCCAGCACTCCCCCAAGGTGGGGGCCCTGTA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS-3UTR CCA 90 bp | ACCTACAGGGCCCCCACCTTGGGGGAGTGCTGGAGTGAGACCAGGTCCAGGCTAAATCGCCATTGGCCGTaGGCCGCCGCGGCGCAGAGT | + |
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Preference number: 4 (lower is better) Translates to: TYRAPTLGECWSETRSRLNRHWP*AAAAQS Trigger: ACTCTGCGCCGCGGCGGCCCACGGCCAATGGCGATT...TAGCCTGGACCTGGTCTCACTCCAGCACTCCCCCAAGGTGGGGGCCCTGTAGGT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS-3UTR GCA 90 bp | ACCTACAGGGCCCCCACCTTGGGGGAGTGCTGGAGTGAGACCAGGTCCAGGCTAACCGCACATGAGCAGTaGGGAGGCCGCCCAGCCGAT | + |
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Preference number: 4 (lower is better) Translates to: TYRAPTLGECWSETRSRLTAHEQ*GGRPAD Trigger: ATCGGCTGGGCGGCCTCCGCACTGCTCATGTGCGGT...TAGCCTGGACCTGGTCTCACTCCAGCACTCCCCCAAGGTGGGGGCCCTGTAGGT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS-3UTR CCA 90 bp | ACCTACAGGGCCCCCACCTTGGGGGAGTGCTGGAGTGAGACCAGGTCCAGGCTATACCCGTGCCTTAACTaGGCCCGGGGCCACGCAGGT | + |
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Preference number: 4 (lower is better) Translates to: TYRAPTLGECWSETRSRLYPCLN*ARGHAG Trigger: ACCTGCGTGGCCCCGGGCCCAGTTAAGGCACGGGTA...TAGCCTGGACCTGGTCTCACTCCAGCACTCCCCCAAGGTGGGGGCCCTGTAGGT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS-3UTR CCA 90 bp | TACAGGGCCCCCACCTTGGGGGAGTGCTGGAGTGAGACCAGGTCCAGGCTAAGTTGTCGTAATCGCCATTaGCCGTGGGCCGCCGCGGCG | + |
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Preference number: 4 (lower is better) Translates to: YRAPTLGECWSETRSRLSCRNRH*PWAAAA Trigger: CGCCGCGGCGGCCCACGGCCAATGGCGATTACGACA...ACTTAGCCTGGACCTGGTCTCACTCCAGCACTCCCCCAAGGTGGGGGCCCTGTA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS-3UTR TCA 90 bp | GGTACCTACAGGGCCCCCACCTTGGGGGAGTGCTGGAGTGAGACCAGGTCCAGGACGCAGGTGGTGCACTaGGCGCCGGTCAAGGTAACA | + |
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Preference number: 4 (lower is better) Translates to: GTYRAPTLGECWSETRSRTQVVH*APVKVT Trigger: TGTTACCTTGACCGGCGCTCAGTGCACCACCTGCGT...CCTGGACCTGGTCTCACTCCAGCACTCCCCCAAGGTGGGGGCCCTGTAGGTACC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS-3UTR CCA 90 bp | GGTACCTACAGGGCCCCCACCTTGGGGGAGTGCTGGAGTGAGACCAGGTCCAGGGCCGTCACGATGTTGTaGTCCAGGAAGGCAGTCACC | + |
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Preference number: 4 (lower is better) Translates to: GTYRAPTLGECWSETRSRAVTML*SRKAVT Trigger: GGTGACTGCCTTCCTGGACCACAACATCGTGACGGC...CCTGGACCTGGTCTCACTCCAGCACTCCCCCAAGGTGGGGGCCCTGTAGGTACC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS-3UTR GCA 90 bp | ACCTACAGGGCCCCCACCTTGGGGGAGTGCTGGAGTGAGACCAGGTCCAGGCTACCCTTCCAAGTCGTCTaGGCCGTCACGATGTTGTGG | + |
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Preference number: 4 (lower is better) Translates to: TYRAPTLGECWSETRSRLPFQVV*AVTMLW Trigger: CCACAACATCGTGACGGCGCAGACGACTTGGAAGGG...TAGCCTGGACCTGGTCTCACTCCAGCACTCCCCCAAGGTGGGGGCCCTGTAGGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS-3UTR GCA 90 bp | ACCTACAGGGCCCCCACCTTGGGGGAGTGCTGGAGTGAGACCAGGTCCAGGCTAATGTGCCCGGTACTCTaGACCACGCACGACATCCAC | + |
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Preference number: 4 (lower is better) Translates to: TYRAPTLGECWSETRSRLMCPVL*TTHDIH Trigger: GTGGATGTCGTGCGTGGTGCAGAGTACCGGGCACAT...TAGCCTGGACCTGGTCTCACTCCAGCACTCCCCCAAGGTGGGGGCCCTGTAGGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS-3UTR GCA 90 bp | GGTACCTACAGGGCCCCCACCTTGGGGGAGTGCTGGAGTGAGACCAGGTCCAGGCAAGGTAACAAAGAGTaGCACCAGCGCCAGCAGCAC | + |
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Preference number: 4 (lower is better) Translates to: GTYRAPTLGECWSETRSRQGNKE*HQRQQH Trigger: GTGCTGCTGGCGCTGGTGGCACTCTTTGTTACCTTG...CCTGGACCTGGTCTCACTCCAGCACTCCCCCAAGGTGGGGGCCCTGTAGGTACC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS-3UTR CCA 90 bp | TACAGGGCCCCCACCTTGGGGGAGTGCTGGAGTGAGACCAGGTCCAGGCTAAGTCGCGGACAACGATGTTaGCGAACCAGCAGAGCGGCA | + |
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Preference number: 4 (lower is better) Translates to: YRAPTLGECWSETRSRLSRGQRC*RTSRAA Trigger: TGCCGCTCTGCTGGTTCGCCAACATCGTTGTCCGCG...ACTTAGCCTGGACCTGGTCTCACTCCAGCACTCCCCCAAGGTGGGGGCCCTGTA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS-3UTR GCA 90 bp | GGTACCTACAGGGCCCCCACCTTGGGGGAGTGCTGGAGTGAGACCAGGTCCAGGCAGATTCATACACCTTaGACTGCATGTGCCCGGTAC | + |
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Preference number: 4 (lower is better) Translates to: GTYRAPTLGECWSETRSRQIHTP*TACARY Trigger: GTACCGGGCACATGCAGTGCAAGGTGTATGAATCTG...CCTGGACCTGGTCTCACTCCAGCACTCCCCCAAGGTGGGGGCCCTGTAGGTACC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS GCA 90 bp | GACCCAGGCGCCGCAACACACGAGGCCGCCACCGCACATGAGCAGTaGGGAGGCCGCCCAGCCGATGTACAGCGCCGCGCCCAGCTCGTA | + |
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Preference number: 5 (lower is better) Translates to: DPGAATHEAATAHEQ*GGRPADVQRRAQLV Trigger: TACGAGCTGGGCGCGGCGCTGTACATCGGCTGGGCGGCCTCCGCACTGCTCATGTGCGGTGGCGGCCTCGTGTGTTGCGGCGCCTGGGTC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS GCA 90 bp | CAGCCCGCACACCGCGTAAAGCGCTCCTCCCGTGAGTGCTACCCGTaGCTTAACTGGGCCCGGGGCCACGCAGGTGGTGCACTGAGCGCC | + |
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Preference number: 5 (lower is better) Translates to: QPAHRVKRSSRECYP*LNWARGHAGGALSA Trigger: GGCGCTCAGTGCACCACCTGCGTGGCCCCGGGCCCAGTTAAGGCACGGGTAGCACTCACGGGAGGAGCGCTTTACGCGGTGTGCGGGCTG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS GCA 90 bp | GAGTGCCAGCAGCCCGCACACCGCGTAAAGCGCTCCTCCCGTGAGTaGTACCCGTGCCTTAACTGGGCCCGGGGCCACGCAGGTGGTGCA | + |
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Preference number: 5 (lower is better) Translates to: ECQQPAHRVKRSSRE*YPCLNWARGHAGGA Trigger: TGCACCACCTGCGTGGCCCCGGGCCCAGTTAAGGCACGGGTAGCACTCACGGGAGGAGCGCTTTACGCGGTGTGCGGGCTGCTGGCACTC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS GCA 90 bp | GGCCACGCAGGTGGTGCACTGAGCGCCGGTCAAGGTAACAAAGAGTaGCACCAGCGCCAGCAGCACAGCGCCCACGGTGAGTGCCCGAGC | + |
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Preference number: 5 (lower is better) Translates to: GHAGGALSAGQGNKE*HQRQQHSAHGECPS Trigger: GCTCGGGCACTCACCGTGGGCGCTGTGCTGCTGGCGCTGGTGGCACTCTTTGTTACCTTGACCGGCGCTCAGTGCACCACCTGCGTGGCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS CCA 90 bp | CACCGCGTAAAGCGCTCCTCCCGTGAGTGCTACCCGTGCCTTAACTaGGCCCGGGGCCACGCAGGTGGTGCACTGAGCGCCGGTCAAGGT | + |
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Preference number: 5 (lower is better) Translates to: HRVKRSSRECYPCLN*ARGHAGGALSAGQG Trigger: ACCTTGACCGGCGCTCAGTGCACCACCTGCGTGGCCCCGGGCCCAGTTAAGGCACGGGTAGCACTCACGGGAGGAGCGCTTTACGCGGTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS TCA 90 bp | GCTACCCGTGCCTTAACTGGGCCCGGGGCCACGCAGGTGGTGCACTaGGCGCCGGTCAAGGTAACAAAGAGTGCCACCAGCGCCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: ATRALTGPGATQVVH*APVKVTKSATSASS Trigger: GCTGCTGGCGCTGGTGGCACTCTTTGTTACCTTGACCGGCGCTCAGTGCACCACCTGCGTGGCCCCGGGCCCAGTTAAGGCACGGGTAGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS GCA 90 bp | GAACTCGCGGACAACGATGTTGGCGAACCAGCAGAGCGGCACGAGTaGCAGCAGCCCGCACACCGCGTAAAGCGCTCCTCCCGTGAGTGC | + |
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Preference number: 5 (lower is better) Translates to: ELADNDVGEPAERHE*QQPAHRVKRSSREC Trigger: GCACTCACGGGAGGAGCGCTTTACGCGGTGTGCGGGCTGCTGGCACTCGTGCCGCTCTGCTGGTTCGCCAACATCGTTGTCCGCGAGTTC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS-3UTR CAA 90 bp | GGTACCTACAGGGCCCCCACCTTGGGGGAGTGCTGGAGTGAGACCAGGTCCAGGTCGCGGACAACGATGTaGGCGAACCAGCAGAGCGGC | + |
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Preference number: 5 (lower is better) Translates to: GTYRAPTLGECWSETRSRSRTTM*ANQQSG Trigger: GCCGCTCTGCTGGTTCGCCAACATCGTTGTCCGCGA...CCTGGACCTGGTCTCACTCCAGCACTCCCCCAAGGTGGGGGCCCTGTAGGTACC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS CCA 90 bp | GTGACACCGGCACCGTCGGATCATAGAACTCGCGGACAACGATGTTaGCGAACCAGCAGAGCGGCACGAGTGCCAGCAGCCCGCACACCG | + |
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Preference number: 5 (lower is better) Translates to: VTPAPSDHRTRGQRC*RTSRAARVPAARTP Trigger: CGGTGTGCGGGCTGCTGGCACTCGTGCCGCTCTGCTGGTTCGCCAACATCGTTGTCCGCGAGTTCTATGATCCGACGGTGCCGGTGTCAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS TCA 90 bp | GGCCGCCCAGCCGATGTACAGCGCCGCGCCCAGCTCGTACTTCTGTaGCACCGGCACCGTCGGATCATAGAACTCGCGGACAACGATGTT | + |
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Preference number: 5 (lower is better) Translates to: GRPADVQRRAQLVLL*HRHRRIIELADNDV Trigger: AACATCGTTGTCCGCGAGTTCTATGATCCGACGGTGCCGGTGTCACAGAAGTACGAGCTGGGCGCGGCGCTGTACATCGGCTGGGCGGCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS CCA 90 bp | GCGCCGTCACGATGTTGTGGTCCAGGAAGGCAGTCACCTGCCACATaGGCAGCCCACACGCCAGGATCAAGCCCACCCATCCTACCAGAC | + |
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Preference number: 5 (lower is better) Translates to: APSRCCGPGRQSPAT*AAHTPGSSPPILPD Trigger: GTCTGGTAGGATGGGTGGGCTTGATCCTGGCGTGTGGGCTGCCCATGTGGCAGGTGACTGCCTTCCTGGACCACAACATCGTGACGGCGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS-3UTR CAA 90 bp | ACCTACAGGGCCCCCACCTTGGGGGAGTGCTGGAGTGAGACCAGGTCCAGGCTATGCGCCGTCACGATGTaGTGGTCCAGGAAGGCAGTC | + |
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Preference number: 5 (lower is better) Translates to: TYRAPTLGECWSETRSRLCAVTM*WSRKAV Trigger: GACTGCCTTCCTGGACCACAACATCGTGACGGCGCA...TAGCCTGGACCTGGTCTCACTCCAGCACTCCCCCAAGGTGGGGGCCCTGTAGGT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS-3UTR CAA 90 bp | GGTACCTACAGGGCCCCCACCTTGGGGGAGTGCTGGAGTGAGACCAGGTCCAGGACAGATTCATACACCTaGCACTGCATGTGCCCGGTA | + |
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Preference number: 5 (lower is better) Translates to: GTYRAPTLGECWSETRSRTDSYT*HCMCPV Trigger: TACCGGGCACATGCAGTGCAAGGTGTATGAATCTGT...CCTGGACCTGGTCTCACTCCAGCACTCCCCCAAGGTGGGGGCCCTGTAGGTACC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS GCA 72 bp | GCCGCAACACACGAGGCCGCCACCGCACATGAGCAGTaGGGAGGCCGCCCAGCCGATGTACAGCGCCGCGCC | + |
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Preference number: 6 (lower is better) Translates to: AATHEAATAHEQ*GGRPADVQRRA Trigger: GGCGCGGCGCTGTACATCGGCTGGGCGGCCTCCGCACTGCTCATGTGCGGTGGCGGCCTCGTGTGTTGCGGC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS CAA 72 bp | TCGCCATTGGCCGTGGGCCGCCGCGGCGCAGAGTACTaGACCGGGAAGCTGAACTCAGGGCGCCCGGTGCAG | + |
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Preference number: 6 (lower is better) Translates to: SPLAVGRRGAEY*TGKLNSGRPVQ Trigger: CTGCACCGGGCGCCCTGAGTTCAGCTTCCCGGTCAAGTACTCTGCGCCGCGGCGGCCCACGGCCAATGGCGA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS GCA 72 bp | CGCCAGCAGCACAGCGCCCACGGTGAGTGCCCGAGCTaGCTGCACCTCCGCACTCAGCGCCAGCACAGATTC | + |
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Preference number: 6 (lower is better) Translates to: RQQHSAHGECPS*LHLRTQRQHRF Trigger: GAATCTGTGCTGGCGCTGAGTGCGGAGGTGCAGGCAGCTCGGGCACTCACCGTGGGCGCTGTGCTGCTGGCG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS GCA 72 bp | CAGCCCGCACACCGCGTAAAGCGCTCCTCCCGTGAGTaGTACCCGTGCCTTAACTGGGCCCGGGGCCACGCA | + |
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Preference number: 6 (lower is better) Translates to: QPAHRVKRSSRE*YPCLNWARGHA Trigger: TGCGTGGCCCCGGGCCCAGTTAAGGCACGGGTAGCACTCACGGGAGGAGCGCTTTACGCGGTGTGCGGGCTG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS CCA 72 bp | AAGCGCTCCTCCCGTGAGTGCTACCCGTGCCTTAACTaGGCCCGGGGCCACGCAGGTGGTGCACTGAGCGCC | + |
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Preference number: 6 (lower is better) Translates to: KRSSRECYPCLN*ARGHAGGALSA Trigger: GGCGCTCAGTGCACCACCTGCGTGGCCCCGGGCCCAGTTAAGGCACGGGTAGCACTCACGGGAGGAGCGCTT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS GCA 72 bp | CACCGCGTAAAGCGCTCCTCCCGTGAGTGCTACCCGTaGCTTAACTGGGCCCGGGGCCACGCAGGTGGTGCA | + |
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Preference number: 6 (lower is better) Translates to: HRVKRSSRECYP*LNWARGHAGGA Trigger: TGCACCACCTGCGTGGCCCCGGGCCCAGTTAAGGCACGGGTAGCACTCACGGGAGGAGCGCTTTACGCGGTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS TCA 72 bp | GCCTTAACTGGGCCCGGGGCCACGCAGGTGGTGCACTaGGCGCCGGTCAAGGTAACAAAGAGTGCCACCAGC | + |
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Preference number: 6 (lower is better) Translates to: ALTGPGATQVVH*APVKVTKSATS Trigger: GCTGGTGGCACTCTTTGTTACCTTGACCGGCGCTCAGTGCACCACCTGCGTGGCCCCGGGCCCAGTTAAGGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS GCA 72 bp | GGTGGTGCACTGAGCGCCGGTCAAGGTAACAAAGAGTaGCACCAGCGCCAGCAGCACAGCGCCCACGGTGAG | + |
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Preference number: 6 (lower is better) Translates to: GGALSAGQGNKE*HQRQQHSAHGE Trigger: CTCACCGTGGGCGCTGTGCTGCTGGCGCTGGTGGCACTCTTTGTTACCTTGACCGGCGCTCAGTGCACCACC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS GCA 72 bp | GACAACGATGTTGGCGAACCAGCAGAGCGGCACGAGTaGCAGCAGCCCGCACACCGCGTAAAGCGCTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: DNDVGEPAERHE*QQPAHRVKRSS Trigger: GGAGGAGCGCTTTACGCGGTGTGCGGGCTGCTGGCACTCGTGCCGCTCTGCTGGTTCGCCAACATCGTTGTC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS TCA 72 bp | GCCGATGTACAGCGCCGCGCCCAGCTCGTACTTCTGTaGCACCGGCACCGTCGGATCATAGAACTCGCGGAC | + |
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Preference number: 6 (lower is better) Translates to: ADVQRRAQLVLL*HRHRRIIELAD Trigger: GTCCGCGAGTTCTATGATCCGACGGTGCCGGTGTCACAGAAGTACGAGCTGGGCGCGGCGCTGTACATCGGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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| CDS CCA 72 bp | GCACCGTCGGATCATAGAACTCGCGGACAACGATGTTaGCGAACCAGCAGAGCGGCACGAGTGCCAGCAGCC | + |
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Preference number: 6 (lower is better) Translates to: APSDHRTRGQRC*RTSRAARVPAA Trigger: GGCTGCTGGCACTCGTGCCGCTCTGCTGGTTCGCCAACATCGTTGTCCGCGAGTTCTATGATCCGACGGTGC 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043577.3 |
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