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Pregenerated sensors for CLDN34D (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079525

Ensembl transcript IDs: ENSMUST00000114054.2

Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 72 bp ACTACTGAAGCTACCACAAGGCAGGAAATAATAGGATaGCCACTTGTCATCATTGGGCATGGTTTTGAATCT +
Preference number: 3 (lower is better)
Translates to: TTEATTRQEIIG*PLVIIGHGFES
Trigger: AGATTCAAAACCATGCCCAATGATGACAAGTGGCCATCCTATTATTTCCTGCCTTGTGGTAGCTTCAGTAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114054.2
CDS-3UTR CCA 90 bp TTAATGAAAATCCATAAGCCAATTGAACTACTGAAGCTACCACAAGGCAGGAAAGCGCACTCGGGAACGTaGGGGAAGAGTGAAAGAAAG +
Preference number: 4 (lower is better)
Translates to: LMKIHKPIELLKLPQGRKAHSGT*GKSERK
Trigger: CTTTCTTTCACTCTTCCCCCACGTTCCCGAGTGCGC...TTTCCTGCCTTGTGGTAGCTTCAGTAGTTCAATTGGCTTATGGATTTTCATTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114054.2
CDS-3UTR TCA 90 bp TTGAATCTGGAAATTTTAAGTATGTATCTGAAGAAGGCCTGCGATAACTCCTGGCTTCCGGAGTCTCCCTaGGTTCAATTTCCAAAGAGC +
Preference number: 4 (lower is better)
Translates to: LNLEILSMYLKKACDNSWLPESP*VQFPKS
Trigger: GCTCTTTGGAAATTGAACTCAGGGAGACTCCGGAAG...CCAGGAGTTATCGCAGGCCTTCTTCAGATACATACTTAAAATTTCCAGATTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114054.2
CDS-3UTR TCA 90 bp CAGGAAATAATAGGATGGCCACTTGTCATCATTGGGCATGGTTTTGAATCTGGAAACGTGGGGGAAGAGTaGAAGAAAGGGGAATTATTC +
Preference number: 4 (lower is better)
Translates to: QEIIGWPLVIIGHGFESGNVGEE*KKGELF
Trigger: GAATAATTCCCCTTTCTTTCACTCTTCCCCCACGTT...TCCAGATTCAAAACCATGCCCAATGATGACAAGTGGCCATCCTATTATTTCCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000114054.2
CDS-3UTR GCA 90 bp CAGGAAATAATAGGATGGCCACTTGTCATCATTGGGCATGGTTTTGAATCTGGATTTCCTGGTGGTAAATaGAGGTTTTCCACATGCCTA +
Preference number: 4 (lower is better)
Translates to: QEIIGWPLVIIGHGFESGFPGGK*RFSTCL
Trigger: TAGGCATGTGGAAAACCTGCATTTACCACCAGGAAA...TCCAGATTCAAAACCATGCCCAATGATGACAAGTGGCCATCCTATTATTTCCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114054.2
CDS-3UTR TCA 90 bp TTAATGAAAATCCATAAGCCAATTGAACTACTGAAGCTACCACAAGGCAGGAAACAAGAAAGCTTGCGATaGGTAGCAGATGTTGGGCAA +
Preference number: 4 (lower is better)
Translates to: LMKIHKPIELLKLPQGRKQESLR*VADVGQ
Trigger: TTGCCCAACATCTGCTACTCATCGCAAGCTTTCTTG...TTTCCTGCCTTGTGGTAGCTTCAGTAGTTCAATTGGCTTATGGATTTTCATTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114054.2
CDS-3UTR GCA 90 bp GTTTTGAATCTGGAAATTTTAAGTATGTATCTGAAGAAGGCCTGCGATAACTCCAATACAAAGGAACCATaGTATGGCGCCTGCAGCAAA +
Preference number: 4 (lower is better)
Translates to: VLNLEILSMYLKKACDNSNTKEP*YGACSK
Trigger: TTTGCTGCAGGCGCCATAGCATGGTTCCTTTGTATT...GGAGTTATCGCAGGCCTTCTTCAGATACATACTTAAAATTTCCAGATTCAAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114054.2
CDS-3UTR CCA 90 bp ATAGGATGGCCACTTGTCATCATTGGGCATGGTTTTGAATCTGGAAATTTTAAGCATGCTTGGAATCCATaGGATCTTGAAAGAACCATA +
Preference number: 4 (lower is better)
Translates to: IGWPLVIIGHGFESGNFKHAWNP*DLERTI
Trigger: TATGGTTCTTTCAAGATCCCATGGATTCCAAGCATG...CTTAAAATTTCCAGATTCAAAACCATGCCCAATGATGACAAGTGGCCATCCTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114054.2
CDS-3UTR CCA 90 bp ATAGGATGGCCACTTGTCATCATTGGGCATGGTTTTGAATCTGGAAATTTTAAGGATGTTCAGAATTCCTaGAAGACGGAATGGATTGAA +
Preference number: 4 (lower is better)
Translates to: IGWPLVIIGHGFESGNFKDVQNS*KTEWIE
Trigger: TTCAATCCATTCCGTCTTCCAGGAATTCTGAACATC...CTTAAAATTTCCAGATTCAAAACCATGCCCAATGATGACAAGTGGCCATCCTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114054.2
CDS-3UTR TCA 90 bp GTTTTGAATCTGGAAATTTTAAGTATGTATCTGAAGAAGGCCTGCGATAACTCCTCCCATCCTTGCGAATaGTCGATAAGTAATTGTACA +
Preference number: 4 (lower is better)
Translates to: VLNLEILSMYLKKACDNSSHPCE*SISNCT
Trigger: TGTACAATTACTTATCGATCATTCGCAAGGATGGGA...GGAGTTATCGCAGGCCTTCTTCAGATACATACTTAAAATTTCCAGATTCAAAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114054.2
CDS GCA 90 bp AGGGAGGCCCATAGAGACAATACAAAGGAACCATGCTATGGCGCCTaGAGCAAAACCTCCTATCTGCCATTTGGCATGCTTTCTGGCCAT +
Preference number: 5 (lower is better)
Translates to: REAHRDNTKEPCYGA*SKTSYLPFGMLSGH
Trigger: ATGGCCAGAAAGCATGCCAAATGGCAGATAGGAGGTTTTGCTGCAGGCGCCATAGCATGGTTCCTTTGTATTGTCTCTATGGGCCTCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114054.2
CDS GCA 90 bp TACTCGCCATTGAGGGAGGCCCATAGAGACAATACAAAGGAACCATaGTATGGCGCCTGCAGCAAAACCTCCTATCTGCCATTTGGCATG +
Preference number: 5 (lower is better)
Translates to: YSPLREAHRDNTKEP*YGACSKTSYLPFGM
Trigger: CATGCCAAATGGCAGATAGGAGGTTTTGCTGCAGGCGCCATAGCATGGTTCCTTTGTATTGTCTCTATGGGCCTCCCTCAATGGCGAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114054.2
CDS-3UTR CAA 90 bp ACCACAAGGCAGGAAATAATAGGATGGCCACTTGTCATCATTGGGCATGGTTTTGGAAGACGGAATGGATaGAAGGTAGCTTTCTTCCGG +
Preference number: 5 (lower is better)
Translates to: TTRQEIIGWPLVIIGHGFGRRNG*KVAFFR
Trigger: CCGGAAGAAAGCTACCTTCAATCCATTCCGTCTTCC...AAAACCATGCCCAATGATGACAAGTGGCCATCCTATTATTTCCTGCCTTGTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114054.2
CDS-3UTR CAA 90 bp GTTTTGAATCTGGAAATTTTAAGTATGTATCTGAAGAAGGCCTGCGATAACTCCGGAATCCATGGGATCTaGAAAGAACCATACTCGCCA +
Preference number: 5 (lower is better)
Translates to: VLNLEILSMYLKKACDNSGIHGI*KEPYSP
Trigger: TGGCGAGTATGGTTCTTTCAAGATCCCATGGATTCC...GGAGTTATCGCAGGCCTTCTTCAGATACATACTTAAAATTTCCAGATTCAAAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114054.2
CDS CAA 90 bp GCCATGCTTGGAATCCATGGGATCTTGAAAGAACCATACTCGCCATaGAGGGAGGCCCATAGAGACAATACAAAGGAACCATGCTATGGC +
Preference number: 6 (lower is better)
Translates to: AMLGIHGILKEPYSP*REAHRDNTKEPCYG
Trigger: GCCATAGCATGGTTCCTTTGTATTGTCTCTATGGGCCTCCCTCAATGGCGAGTATGGTTCTTTCAAGATCCCATGGATTCCAAGCATGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114054.2
CDS GCA 72 bp CATAGAGACAATACAAAGGAACCATGCTATGGCGCCTaGAGCAAAACCTCCTATCTGCCATTTGGCATGCTT +
Preference number: 6 (lower is better)
Translates to: HRDNTKEPCYGA*SKTSYLPFGML
Trigger: AAGCATGCCAAATGGCAGATAGGAGGTTTTGCTGCAGGCGCCATAGCATGGTTCCTTTGTATTGTCTCTATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114054.2
CDS CCA 72 bp ACATGCCTACTAAGGTCATGCCATGCTTGGAATCCATaGGATCTTGAAAGAACCATACTCGCCATTGAGGGA +
Preference number: 6 (lower is better)
Translates to: TCLLRSCHAWNP*DLERTILAIEG
Trigger: TCCCTCAATGGCGAGTATGGTTCTTTCAAGATCCCATGGATTCCAAGCATGGCATGACCTTAGTAGGCATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114054.2
CDS CCA 72 bp AGGTTTTCCACATGCCTACTAAGGTCATGCCATGCTTaGAATCCATGGGATCTTGAAAGAACCATACTCGCC +
Preference number: 6 (lower is better)
Translates to: RFSTCLLRSCHA*NPWDLERTILA
Trigger: GGCGAGTATGGTTCTTTCAAGATCCCATGGATTCCAAGCATGGCATGACCTTAGTAGGCATGTGGAAAACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114054.2
CDS CAA 72 bp GGAATCCATGGGATCTTGAAAGAACCATACTCGCCATaGAGGGAGGCCCATAGAGACAATACAAAGGAACCA +
Preference number: 6 (lower is better)
Translates to: GIHGILKEPYSP*REAHRDNTKEP
Trigger: TGGTTCCTTTGTATTGTCTCTATGGGCCTCCCTCAATGGCGAGTATGGTTCTTTCAAGATCCCATGGATTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114054.2
CDS CAA 72 bp GCAATGATGTTCAGAATTCCTGGAAGACGGAATGGATaGAAGGTAGCTTTCTTCCGGAGTCTCCCTGAGTTC +
Preference number: 6 (lower is better)
Translates to: AMMFRIPGRRNG*KVAFFRSLPEF
Trigger: GAACTCAGGGAGACTCCGGAAGAAAGCTACCTTCAATCCATTCCGTCTTCCAGGAATTCTGAACATCATTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114054.2
CDS GCA 72 bp GGTAAATGCAGGTTTTCCACATGCCTACTAAGGTCATaGCATGCTTGGAATCCATGGGATCTTGAAAGAACC +
Preference number: 6 (lower is better)
Translates to: GKCRFSTCLLRS*HAWNPWDLERT
Trigger: GGTTCTTTCAAGATCCCATGGATTCCAAGCATGGCATGACCTTAGTAGGCATGTGGAAAACCTGCATTTACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114054.2
CDS GCA 72 bp AATTGCTTTCCTGGTGGTAAATGCAGGTTTTCCACATaGCTACTAAGGTCATGCCATGCTTGGAATCCATGG +
Preference number: 6 (lower is better)
Translates to: NCFPGGKCRFST*LLRSCHAWNPW
Trigger: CCATGGATTCCAAGCATGGCATGACCTTAGTAGGCATGTGGAAAACCTGCATTTACCACCAGGAAAGCAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114054.2
CDS TCA 72 bp GAATGGATTGAAGGTAGCTTTCTTCCGGAGTCTCCCTaGGTTCAATTTCCAAAGAGCAATGATGACAGAGAT +
Preference number: 6 (lower is better)
Translates to: EWIEGSFLPESP*VQFPKSNDDRD
Trigger: ATCTCTGTCATCATTGCTCTTTGGAAATTGAACTCAGGGAGACTCCGGAAGAAAGCTACCTTCAATCCATTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114054.2