Pregenerated sensors for CLDN34C4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000043569

Ensembl transcript IDs: ENSMUST00000052500.6

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CGAGGGCATCATGGTAGGAGTAGTGCTGGCAAACACTCTTGTGGCTaGAGTTGTCAACGTGGTTGCAGATACTGGCCCTCCACATACCTA	+
Preference number: 5 (lower is better) Translates to: RGHHGRSSAGKHSCG*SCQRGCRYWPSTYL Trigger: TAGGTATGTGGAGGGCCAGTATCTGCAACCACGTTGACAACTCCAGCCACAAGAGTGTTTGCCAGCACTACTCCTACCATGATGCCCTCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052500.6
CDS GCA 90 bp	AATTCGCCATTCTGGAAGGCCCATAGATGTGCTGCACATTATCCATaGAATGGTGGCCAAGGCGAAACCTCTTATTTGGTAATTGGCAGA	+
Preference number: 5 (lower is better) Translates to: NSPFWKAHRCAAHYP*NGGQGETSYLVIGR Trigger: TCTGCCAATTACCAAATAAGAGGTTTCGCCTTGGCCACCATTGCATGGATAATGTGCAGCACATCTATGGGCCTTCCAGAATGGCGAATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052500.6
CDS TCA 90 bp	AATAGTGCAGATATGCTTGCCACTCCCATGGCACTTCCTGCTCTTTaGGCATATGGAAAAACTGGCATTTGTAAAGAAAGCAGGAAACTT	+
Preference number: 5 (lower is better) Translates to: NSADMLATPMALPAL*AYGKTGICKESRKL Trigger: AAGTTTCCTGCTTTCTTTACAAATGCCAGTTTTTCCATATGCTCAAAGAGCAGGAAGTGCCATGGGAGTGGCAAGCATATCTGCACTATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052500.6
CDS CCA 72 bp	ATAAAAACAATAGTGCAGATATGCTTGCCACTCCCATaGCACTTCCTGCTCTTTGAGCATATGGAAAAACTG	+
Preference number: 6 (lower is better) Translates to: IKTIVQICLPLP*HFLLFEHMEKL Trigger: CAGTTTTTCCATATGCTCAAAGAGCAGGAAGTGCCATGGGAGTGGCAAGCATATCTGCACTATTGTTTTTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000052500.6
CDS GCA 72 bp	AACTTAATGCACTTAATAAAAACAATAGTGCAGATATaGTTGCCACTCCCATGGCACTTCCTGCTCTTTGAG	+
Preference number: 6 (lower is better) Translates to: NLMHLIKTIVQI*LPLPWHFLLFE Trigger: CTCAAAGAGCAGGAAGTGCCATGGGAGTGGCAAGCATATCTGCACTATTGTTTTTATTAAGTGCATTAAGTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052500.6
CDS CAA 72 bp	TTAATGCACTTAATAAAAACAATAGTGCAGATATGCTaGCCACTCCCATGGCACTTCCTGCTCTTTGAGCAT	+
Preference number: 6 (lower is better) Translates to: LMHLIKTIVQIC*PLPWHFLLFEH Trigger: ATGCTCAAAGAGCAGGAAGTGCCATGGGAGTGGCAAGCATATCTGCACTATTGTTTTTATTAAGTGCATTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052500.6
CDS CAA 72 bp	GAACAGCTGAAAGAAGAAATGGATTGTCGTCATTATTaGTCTCCAGTTTCTCTGTGTATAACTGCTGTAGAG	+
Preference number: 6 (lower is better) Translates to: EQLKEEMDCRHY*SPVSLCITAVE Trigger: CTCTACAGCAGTTATACACAGAGAAACTGGAGACAAATAATGACGACAATCCATTTCTTCTTTCAGCTGTTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052500.6
CDS CAA 72 bp	ATAACAGCAAGAAAAATAAAGGTGCTAGCAACAGCGTaGAGAACAGCTGAAAGAAGAAATGGATTGTCGTCA	+
Preference number: 6 (lower is better) Translates to: ITARKIKVLATA*RTAERRNGLSS Trigger: TGACGACAATCCATTTCTTCTTTCAGCTGTTCTCAACGCTGTTGCTAGCACCTTTATTTTTCTTGCTGTTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052500.6
CDS CAA 90 bp	AAATTACACATAACAGCAAGAAAAATAAAGGTGCTAGCAACAGCGTaGAGAACAGCTGAAAGAAGAAATGGATTGTCGTCATTATTTGTC	+
Preference number: 6 (lower is better) Translates to: KLHITARKIKVLATA*RTAERRNGLSSLFV Trigger: GACAAATAATGACGACAATCCATTTCTTCTTTCAGCTGTTCTCAACGCTGTTGCTAGCACCTTTATTTTTCTTGCTGTTATGTGTAATTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052500.6

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