Pregenerated sensors for CLDN34C2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095474

Ensembl transcript IDs: ENSMUST00000178457.2, ENSMUST00000238499.2

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	AACCTCTTATTTGGTGATTGGCAGACTTGTTTAGCAGGACCATGCTaGCATCAAATATGTGGAAACCAGCAAGGGTCCTATTTCTTGCAG	+
Preference number: 5 (lower is better) Translates to: NLLFGDWQTCLAGPC*HQICGNQQGSYFLQ Trigger: CTGCAAGAAATAGGACCCTTGCTGGTTTCCACATATTTGATGCCAGCATGGTCCTGCTAAACAAGTCTGCCAATCACCAAATAAGAGGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178457.2 ENSMUST00000238499.2
CDS CCA 90 bp	TGGGTAGGAAAGCATGGAGTTGTTCAAGTAGCAAATTCGCCATTCTaGAAGGGCCATAGAGGTATTGCACATTATGCATGCTATTGTAGC	+
Preference number: 5 (lower is better) Translates to: WVGKHGVVQVANSPF*KGHRGIAHYACYCS Trigger: GCTACAATAGCATGCATAATGTGCAATACCTCTATGGCCCTTCCAGAATGGCGAATTTGCTACTTGAACAACTCCATGCTTTCCTACCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178457.2 ENSMUST00000238499.2
CDS TCA 90 bp	AAAGATTGCAGGAAAGATACCTCTTCCTTGCTGGGCACGGAGAGGTaGTTACACATAACAGCAAGAAAAATAAAGGTGCTAGCAATAGCA	+
Preference number: 5 (lower is better) Translates to: KDCRKDTSSLLGTER*LHITARKIKVLAIA Trigger: TGCTATTGCTAGCACCTTTATTTTTCTTGCTGTTATGTGTAATCACCTCTCCGTGCCCAGCAAGGAAGAGGTATCTTTCCTGCAATCTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000178457.2 ENSMUST00000238499.2
CDS CAA 90 bp	CAAGGTTGTTATGGCAGGTGTAGTAATGGCAATCTCTCAGGTGGCTaGAGTTGTGGTTGTGGTGGCAGATGTAGGCCTCCCAAATATTCA	+
Preference number: 6 (lower is better) Translates to: QGCYGRCSNGNLSGG*SCGCGGRCRPPKYS Trigger: TGAATATTTGGGAGGCCTACATCTGCCACCACAACCACAACTCAAGCCACCTGAGAGATTGCCATTACTACACCTGCCATAACAACCTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178457.2 ENSMUST00000238499.2
CDS GCA 72 bp	GACAGAACAAACTGTCCCAACCAGACCAACAACATTTaGAACCAGGAGCAGAATTTGAGATACCCGGATATC	+
Preference number: 6 (lower is better) Translates to: DRTNCPNQTNNI*NQEQNLRYPDI Trigger: GATATCCGGGTATCTCAAATTCTGCTCCTGGTTGCAAATGTTGTTGGTCTGGTTGGGACAGTTTGTTCTGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178457.2 ENSMUST00000238499.2
CDS CCA 72 bp	TTTGGTGATTGGCAGACTTGTTTAGCAGGACCATGCTaGCATCAAATATGTGGAAACCAGCAAGGGTCCTAT	+
Preference number: 6 (lower is better) Translates to: FGDWQTCLAGPC*HQICGNQQGSY Trigger: ATAGGACCCTTGCTGGTTTCCACATATTTGATGCCAGCATGGTCCTGCTAAACAAGTCTGCCAATCACCAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178457.2 ENSMUST00000238499.2
CDS CAA 90 bp	GTAGAGCAAAGACAGAACAAACTGTCCCAACCAGACCAACAACATTaGCAACCAGGAGCAGAATTTGAGATACCCGGATATCCAAAGGAA	+
Preference number: 6 (lower is better) Translates to: VEQRQNKLSQPDQQH*QPGAEFEIPGYPKE Trigger: TTCCTTTGGATATCCGGGTATCTCAAATTCTGCTCCTGGTTGCAAATGTTGTTGGTCTGGTTGGGACAGTTTGTTCTGTCTTTGCTCTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178457.2 ENSMUST00000238499.2
CDS CCA 72 bp	AAGCATGGAGTTGTTCAAGTAGCAAATTCGCCATTCTaGAAGGGCCATAGAGGTATTGCACATTATGCATGC	+
Preference number: 6 (lower is better) Translates to: KHGVVQVANSPF*KGHRGIAHYAC Trigger: GCATGCATAATGTGCAATACCTCTATGGCCCTTCCAGAATGGCGAATTTGCTACTTGAACAACTCCATGCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178457.2 ENSMUST00000238499.2
CDS CAA 72 bp	AGACAGAACAAACTGTCCCAACCAGACCAACAACATTaGCAACCAGGAGCAGAATTTGAGATACCCGGATAT	+
Preference number: 6 (lower is better) Translates to: RQNKLSQPDQQH*QPGAEFEIPGY Trigger: ATATCCGGGTATCTCAAATTCTGCTCCTGGTTGCAAATGTTGTTGGTCTGGTTGGGACAGTTTGTTCTGTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178457.2 ENSMUST00000238499.2
CDS CAA 72 bp	AACCAGACCAACAACATTTGCAACCAGGAGCAGAATTaGAGATACCCGGATATCCAAAGGAACAAGGTTGTT	+
Preference number: 6 (lower is better) Translates to: NQTNNICNQEQN*RYPDIQRNKVV Trigger: AACAACCTTGTTCCTTTGGATATCCGGGTATCTCAAATTCTGCTCCTGGTTGCAAATGTTGTTGGTCTGGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178457.2 ENSMUST00000238499.2
CDS CCA 72 bp	AAATATTCACAAAAGCCAGACTTGGGTAGGAAAGCATaGAGTTGTTCAAGTAGCAAATTCGCCATTCTGGAA	+
Preference number: 6 (lower is better) Translates to: KYSQKPDLGRKA*SCSSSKFAILE Trigger: TTCCAGAATGGCGAATTTGCTACTTGAACAACTCCATGCTTTCCTACCCAAGTCTGGCTTTTGTGAATATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178457.2 ENSMUST00000238499.2

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