Pregenerated sensors for CLDN34C1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079450Ensembl transcript IDs: ENSMUST00000113343.8, ENSMUST00000113348.8, ENSMUST00000169445.3
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTGTATTTGCCAGGCACTAGCAGAGCCTCACAAGAGACAGCTATATaGGGCTCCTCTCAGCAGCCTCTTATTGGCATCTACCTAGTGACT | + |
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Preference number: 1 (lower is better) Translates to: LYLPGTSRASQETAI*GSSQQPLIGIYLVT Trigger: AGTCACTAGGTAGATGCCAATAAGAGGCTGCTGAGAGGAGCCTCATATAGCTGTCTCTTGTGAGGCTCTGCTAGTGCCTGGCAAATACAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR GCA 90 bp | ATGTGCTCTGTCCAATGGATAATTGTGAGCATCCACTTCTGTATTTaGCAGGCACTAGCAGAGCCTCACAAGAGACAGCTATATGAGGCT | + |
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Preference number: 1 (lower is better) Translates to: MCSVQWIIVSIHFCI*QALAEPHKRQLYEA Trigger: AGCCTCATATAGCTGTCTCTTGTGAGGCTCTGCTAGTGCCTGGCAAATACAGAAGTGGATGCTCACAATTATCCATTGGACAGAGCACAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR CCA 90 bp | AATGTCATGGGTAATAGGCAGATGGGGACACTACACAAATGTGTGTaGTGTGTGTTTGTGTTTGTGTGTATGATGTGTACAAGTGTGAAT | + |
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Preference number: 1 (lower is better) Translates to: NVMGNRQMGTLHKCV*CVFVFVCMMCTSVN Trigger: ATTCACACTTGTACACATCATACACACAAACACAAACACACACCACACACATTTGTGTAGTGTCCCCATCTGCCTATTACCCATGACATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR CCA 90 bp | GTTCAGCAAACCAAAATTATTAAAATGTCATGGGTAATAGGCAGATaGGGACACTACACAAATGTGTGTGGTGTGTGTTTGTGTTTGTGT | + |
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Preference number: 1 (lower is better) Translates to: VQQTKIIKMSWVIGR*GHYTNVCGVCLCLC Trigger: ACACAAACACAAACACACACCACACACATTTGTGTAGTGTCCCCATCTGCCTATTACCCATGACATTTTAATAATTTTGGTTTGCTGAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR CCA 90 bp | TATCCACTTATCAGTGAGTACATATCATGTGTTTCCTTTTGTGATTaGGTTACCTCATTTAGGATGATATCCTCCAAATCTATCCATTTG | + |
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Preference number: 1 (lower is better) Translates to: YPLISEYISCVSFCD*VTSFRMISSKSIHL Trigger: CAAATGGATAGATTTGGAGGATATCATCCTAAATGAGGTAACCCAATCACAAAAGGAAACACATGATATGTACTCACTGATAAGTGGATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR TCA 90 bp | GGCATTCCCCTGTACTGGGGCATAGAGCCTTCCCAAGACCAAGGGCCTCTCCTTACCCCTCCAGCTCAATaGGTATTTCTCTGGCTCCTT | + |
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Preference number: 2 (lower is better) Translates to: GIPLYWGIEPSQDQGPLLTPPAQ*VFLWLL Trigger: AAGGAGCCAGAGAAATACTCATTGAGCTGGAGGGGT...AAGGAGAGGCCCTTGGTCTTGGGAAGGCTCTATGCCCCAGTACAGGGGAATGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR TCA 90 bp | GGCATTCCCCTGTACTGGGGCATAGAGCCTTCCCAAGACCAAGGGCCTCTCCTTCTGATTAGTTCATATTaGTGTTCCACCTATAGGGCT | + |
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Preference number: 2 (lower is better) Translates to: GIPLYWGIEPSQDQGPLLLISSY*CSTYRA Trigger: AGCCCTATAGGTGGAACATCAATATGAACTAATCAG...AAGGAGAGGCCCTTGGTCTTGGGAAGGCTCTATGCCCCAGTACAGGGGAATGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR GCA 90 bp | GGCATTCCCCTGTACTGGGGCATAGAGCCTTCCCAAGACCAAGGGCCTCTCCTTGAGACTCATGTGTTTTaGAAATTGTGTCTTGTGTAT | + |
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Preference number: 2 (lower is better) Translates to: GIPLYWGIEPSQDQGPLLETHVF*KLCLVY Trigger: ATACACAAGACACAATTTGCAAAACACATGAGTCTC...AAGGAGAGGCCCTTGGTCTTGGGAAGGCTCTATGCCCCAGTACAGGGGAATGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR TCA 90 bp | ATTTGCCAGGCACTAGCAGAGCCTCACAAGAGACAGCTATATGAGGCTCCTCTCGCTCTTCCTTCTTCTTaGGACTCATGTGTTTTGCAA | + |
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Preference number: 2 (lower is better) Translates to: ICQALAEPHKRQLYEAPLALPSS*DSCVLQ Trigger: TTGCAAAACACATGAGTCTCAAGAAGAAGGAAGAGC...GAGAGGAGCCTCATATAGCTGTCTCTTGTGAGGCTCTGCTAGTGCCTGGCAAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR GCA 90 bp | ATTTGCCAGGCACTAGCAGAGCCTCACAAGAGACAGCTATATGAGGCTCCTCTCAAGGAAATCTCCCTTTaGAATCTGAAGAGAGAGAGA | + |
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Preference number: 2 (lower is better) Translates to: ICQALAEPHKRQLYEAPLKEISL*NLKRER Trigger: TCTCTCTCTCTTCAGATTGCAAAGGGAGATTTCCTT...GAGAGGAGCCTCATATAGCTGTCTCTTGTGAGGCTCTGCTAGTGCCTGGCAAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR GCA 90 bp | TGTGAGCATCCACTTCTGTATTTGCCAGGCACTAGCAGAGCCTCACAAGAGACAAAGGAAATCTCCCTTTaGAATCTGAAGAGAGAGAGA | + |
|
Preference number: 2 (lower is better) Translates to: CEHPLLYLPGTSRASQETKEISL*NLKRER Trigger: TCTCTCTCTCTTCAGATTGCAAAGGGAGATTTCCTT...TGTCTCTTGTGAGGCTCTGCTAGTGCCTGGCAAATACAGAAGTGGATGCTCACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR CCA 90 bp | AATGAGTATTTCTCTGGCTCCTTCATTGGGACCCATGTGCTCTGTCCAATGGATTCAGCAGCCTCTTATTaGCATCTACCTAGTGACTGT | + |
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Preference number: 2 (lower is better) Translates to: NEYFSGSFIGTHVLCPMDSAASY*HLPSDC Trigger: ACAGTCACTAGGTAGATGCCAATAAGAGGCTGCTGA...ATCCATTGGACAGAGCACATGGGTCCCAATGAAGGAGCCAGAGAAATACTCATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR CCA 90 bp | TTCTGTATTTGCCAGGCACTAGCAGAGCCTCACAAGAGACAGCTATATGAGGCTGTTTCCTTTTGTGATTaGGTTACCTCATTTAGGATG | + |
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Preference number: 2 (lower is better) Translates to: FCICQALAEPHKRQLYEAVSFCD*VTSFRM Trigger: CATCCTAAATGAGGTAACCCAATCACAAAAGGAAAC...AGCCTCATATAGCTGTCTCTTGTGAGGCTCTGCTAGTGCCTGGCAAATACAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR CCA 90 bp | CATTCAGTACAAAGAACATGGCATCACCCAGAAAGTACATTTTCTAAAGAGCTCAGGGCAGTCTCTGGATaGTTGTTCCTTCAGGATCTG | + |
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Preference number: 2 (lower is better) Translates to: HSVQRTWHHPESTFSKELRAVSG*LFLQDL Trigger: CAGATCCTGAAGGAACAACCATCCAGAGACTGCCCT...GAGCTCTTTAGAAAATGTACTTTCTGGGTGATGCCATGTTCTTTGTACTGAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR GCA 90 bp | TTCTGTATTTGCCAGGCACTAGCAGAGCCTCACAAGAGACAGCTATATGAGGCTGAGACTCATGTGTTTTaGAAATTGTGTCTTGTGTAT | + |
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Preference number: 2 (lower is better) Translates to: FCICQALAEPHKRQLYEAETHVF*KLCLVY Trigger: ATACACAAGACACAATTTGCAAAACACATGAGTCTC...AGCCTCATATAGCTGTCTCTTGTGAGGCTCTGCTAGTGCCTGGCAAATACAGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR GCA 90 bp | AAAGAACATGGCATCACCCAGAAAGTACATTTTCTAAAGAGCTCAACCAGAGTTATCCACTTCTGTATTTaGCAGGCACTAGCAGAGCCT | + |
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Preference number: 2 (lower is better) Translates to: KEHGITQKVHFLKSSTRVIHFCI*QALAEP Trigger: AGGCTCTGCTAGTGCCTGGCAAATACAGAAGTGGAT...AACTCTGGTTGAGCTCTTTAGAAAATGTACTTTCTGGGTGATGCCATGTTCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR TCA 90 bp | AAAGAACATGGCATCACCCAGAAAGTACATTTTCTAAAGAGCTCAACCAGAGTTTATCCATTCCTTTCTTaGGGGACATCTGGGTTCGTT | + |
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Preference number: 2 (lower is better) Translates to: KEHGITQKVHFLKSSTRVYPFLS*GTSGFV Trigger: AACGAACCCAGATGTCCCTCAAGAAAGGAATGGATA...AACTCTGGTTGAGCTCTTTAGAAAATGTACTTTCTGGGTGATGCCATGTTCTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR CAA 90 bp | GGATCTGTTCCGAACTTTGCCTTTGTAACTCCTTCCATTGGTATTTaGTTCCCCATTTTAAGAAGAAAGGATGTATCCACACTTTGCTCT | + |
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Preference number: 2 (lower is better) Translates to: GSVPNFAFVTPSIGI*FPILRRKDVSTLCS Trigger: AGAGCAAAGTGTGGATACATCCTTTCTTCTTAAAATGGGGAACAAAATACCAATGGAAGGAGTTACAAAGGCAAAGTTCGGAACAGATCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR CCA 90 bp | ATTATTAAAATGTCATGGGTAATAGGCAGATGGGGACACTACACAAATGTGTGTTCAGCAGCCTCTTATTaGCATCTACCTAGTGACTGT | + |
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Preference number: 2 (lower is better) Translates to: IIKMSWVIGRWGHYTNVCSAASY*HLPSDC Trigger: ACAGTCACTAGGTAGATGCCAATAAGAGGCTGCTGA...ACACACATTTGTGTAGTGTCCCCATCTGCCTATTACCCATGACATTTTAATAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR TCA 90 bp | ATTATTAAAATGTCATGGGTAATAGGCAGATGGGGACACTACACAAATGTGTGTGCTCTTCCTTCTTCTTaGGACTCATGTGTTTTGCAA | + |
|
Preference number: 2 (lower is better) Translates to: IIKMSWVIGRWGHYTNVCALPSS*DSCVLQ Trigger: TTGCAAAACACATGAGTCTCAAGAAGAAGGAAGAGC...ACACACATTTGTGTAGTGTCCCCATCTGCCTATTACCCATGACATTTTAATAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR CAA 90 bp | TGCTCTTCCTTCTTCTTGAGACTCATGTGTTTTGCAAATTGTGTCTaGTGTATTCTAAGTTTCTGGGCTAATATCCACTTATCAGTGAGT | + |
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Preference number: 2 (lower is better) Translates to: CSSFFLRLMCFANCV*CILSFWANIHLSVS Trigger: ACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGAATACACAAGACACAATTTGCAAAACACATGAGTCTCAAGAAGAAGGAAGAGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR CCA 90 bp | GTTCCCCATTTTAAGAAGAAAGGATGTATCCACACTTTGCTCTTCCTTCTTCTTGTTTCCTTTTGTGATTaGGTTACCTCATTTAGGATG | + |
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Preference number: 2 (lower is better) Translates to: VPHFKKKGCIHTLLFLLLVSFCD*VTSFRM Trigger: CATCCTAAATGAGGTAACCCAATCACAAAAGGAAAC...AAGAAGAAGGAAGAGCAAAGTGTGGATACATCCTTTCTTCTTAAAATGGGGAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR CCA 90 bp | GCTAATATCCACTTATCAGTGAGTACATATCATGTGTTTCCTTTTGTGATTGGGGTTGTATGTGAGAGATaGATTCTATATGTTCTGTCC | + |
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Preference number: 2 (lower is better) Translates to: ANIHLSVSTYHVFPFVIGVVCER*ILYVLS Trigger: GGACAGAACATATAGAATCCATCTCTCACATACAAC...CCCAATCACAAAAGGAAACACATGATATGTACTCACTGATAAGTGGATATTAGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR CCA 90 bp | ATTATTAAAATGTCATGGGTAATAGGCAGATGGGGACACTACACAAATGTGTGTGTTGTATGTGAGAGATaGATTCTATATGTTCTGTCC | + |
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Preference number: 2 (lower is better) Translates to: IIKMSWVIGRWGHYTNVCVVCER*ILYVLS Trigger: GGACAGAACATATAGAATCCATCTCTCACATACAAC...ACACACATTTGTGTAGTGTCCCCATCTGCCTATTACCCATGACATTTTAATAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR CAA 90 bp | GGCATTCCCCTGTACTGGGGCATAGAGCCTTCCCAAGACCAAGGGCCTCTCCTTTCTCTGGCTCCTTCATaGGGACCCATGTGCTCTGTC | + |
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Preference number: 3 (lower is better) Translates to: GIPLYWGIEPSQDQGPLLSLAPS*GPMCSV Trigger: GACAGAGCACATGGGTCCCAATGAAGGAGCCAGAGA...AAGGAGAGGCCCTTGGTCTTGGGAAGGCTCTATGCCCCAGTACAGGGGAATGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR CAA 90 bp | GGCATTCCCCTGTACTGGGGCATAGAGCCTTCCCAAGACCAAGGGCCTCTCCTTCATCCACTTCTGTATTaGCCAGGCACTAGCAGAGCC | + |
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Preference number: 3 (lower is better) Translates to: GIPLYWGIEPSQDQGPLLHPLLY*PGTSRA Trigger: GGCTCTGCTAGTGCCTGGCAAATACAGAAGTGGATG...AAGGAGAGGCCCTTGGTCTTGGGAAGGCTCTATGCCCCAGTACAGGGGAATGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR CAA 90 bp | GGCATTCCCCTGTACTGGGGCATAGAGCCTTCCCAAGACCAAGGGCCTCTCCTTATGGTTCCAAGGAGCTaGGGGGTACTGATTAGTTCA | + |
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Preference number: 3 (lower is better) Translates to: GIPLYWGIEPSQDQGPLLMVPRS*GVLISS Trigger: TGAACTAATCAGTACCCCCAAGCTCCTTGGAACCAT...AAGGAGAGGCCCTTGGTCTTGGGAAGGCTCTATGCCCCAGTACAGGGGAATGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR TCA 72 bp | CCAGGCACTAGCAGAGCCTCACAAGAGACAGCTATATaGGGCTCCTCTCAGCAGCCTCTTATTGGCATCTAC | + |
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Preference number: 3 (lower is better) Translates to: PGTSRASQETAI*GSSQQPLIGIY Trigger: GTAGATGCCAATAAGAGGCTGCTGAGAGGAGCCTCATATAGCTGTCTCTTGTGAGGCTCTGCTAGTGCCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR CAA 90 bp | GGCATTCCCCTGTACTGGGGCATAGAGCCTTCCCAAGACCAAGGGCCTCTCCTTTGCTCTTCCTTCTTCTaGAGACTCATGTGTTTTGCA | + |
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Preference number: 3 (lower is better) Translates to: GIPLYWGIEPSQDQGPLLCSSFF*RLMCFA Trigger: TGCAAAACACATGAGTCTCAAGAAGAAGGAAGAGCA...AAGGAGAGGCCCTTGGTCTTGGGAAGGCTCTATGCCCCAGTACAGGGGAATGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR TCA 72 bp | GTTCCACCTATAGGGCTTCAGACCCCTCCAGCTCAATaGGTATTTCTCTGGCTCCTTCATTGGGACCCATGT | + |
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Preference number: 3 (lower is better) Translates to: VPPIGLQTPPAQ*VFLWLLHWDPC Trigger: ACATGGGTCCCAATGAAGGAGCCAGAGAAATACTCATTGAGCTGGAGGGGTCTGAAGCCCTATAGGTGGAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR CCA 72 bp | GGCATCTACCTAGTGACTGTGTTTGGTAGTTGTTTATaGGGTGTATCCCCAGGTAGGGCAGTCTCTGGATGG | + |
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Preference number: 3 (lower is better) Translates to: GIYLVTVFGSCL*GVSPGRAVSGW Trigger: CCATCCAGAGACTGCCCTACCTGGGGATACACCCCATAAACAACTACCAAACACAGTCACTAGGTAGATGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR CCA 72 bp | CTGGCTCCTTCATTGGGACCCATGTGCTCTGTCCAATaGATAATTGTGAGCATCCACTTCTGTATTTGCCAG | + |
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Preference number: 3 (lower is better) Translates to: LAPSLGPMCSVQ*IIVSIHFCICQ Trigger: CTGGCAAATACAGAAGTGGATGCTCACAATTATCCATTGGACAGAGCACATGGGTCCCAATGAAGGAGCCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR CAA 90 bp | TTCTGTATTTGCCAGGCACTAGCAGAGCCTCACAAGAGACAGCTATATGAGGCTGGATGTATCCACACTTaGCTCTTCCTTCTTCTTGAG | + |
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Preference number: 3 (lower is better) Translates to: FCICQALAEPHKRQLYEAGCIHT*LFLLLE Trigger: CTCAAGAAGAAGGAAGAGCAAAGTGTGGATACATCC...AGCCTCATATAGCTGTCTCTTGTGAGGCTCTGCTAGTGCCTGGCAAATACAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR GCA 72 bp | GTCCAATGGATAATTGTGAGCATCCACTTCTGTATTTaGCAGGCACTAGCAGAGCCTCACAAGAGACAGCTA | + |
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Preference number: 3 (lower is better) Translates to: VQWIIVSIHFCI*QALAEPHKRQL Trigger: TAGCTGTCTCTTGTGAGGCTCTGCTAGTGCCTGGCAAATACAGAAGTGGATGCTCACAATTATCCATTGGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR CAA 90 bp | ATTTGCCAGGCACTAGCAGAGCCTCACAAGAGACAGCTATATGAGGCTCCTCTCAGAGAGAGAATAAAGTaGTATGTGAGAGATGGATTC | + |
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Preference number: 3 (lower is better) Translates to: ICQALAEPHKRQLYEAPLRERIK*YVRDGF Trigger: GAATCCATCTCTCACATACAACTTTATTCTCTCTCT...GAGAGGAGCCTCATATAGCTGTCTCTTGTGAGGCTCTGCTAGTGCCTGGCAAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR CAA 90 bp | ATTTGCCAGGCACTAGCAGAGCCTCACAAGAGACAGCTATATGAGGCTCCTCTCCCTTCCATTGGTATTTaGTTCCCCATTTTAAGAAGA | + |
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Preference number: 3 (lower is better) Translates to: ICQALAEPHKRQLYEAPLPSIGI*FPILRR Trigger: TCTTCTTAAAATGGGGAACAAAATACCAATGGAAGG...GAGAGGAGCCTCATATAGCTGTCTCTTGTGAGGCTCTGCTAGTGCCTGGCAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR GCA 72 bp | ATGAGTATTTCTCTGGCTCCTTCATTGGGACCCATGTaGTCTGTCCAATGGATAATTGTGAGCATCCACTTC | + |
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Preference number: 3 (lower is better) Translates to: MSISLAPSLGPM*SVQWIIVSIHF Trigger: GAAGTGGATGCTCACAATTATCCATTGGACAGAGCACATGGGTCCCAATGAAGGAGCCAGAGAAATACTCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR CAA 90 bp | AAAGAACATGGCATCACCCAGAAAGTACATTTTCTAAAGAGCTCAACCAGAGTTCATCCACTTCTGTATTaGCCAGGCACTAGCAGAGCC | + |
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Preference number: 3 (lower is better) Translates to: KEHGITQKVHFLKSSTRVHPLLY*PGTSRA Trigger: GGCTCTGCTAGTGCCTGGCAAATACAGAAGTGGATG...AACTCTGGTTGAGCTCTTTAGAAAATGTACTTTCTGGGTGATGCCATGTTCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR GCA 72 bp | CTGGATGGTTGTTCCTTCAGGATCTGTTCCGAACTTTaGCTTTGTAACTCCTTCCATTGGTATTTTGTTCCC | + |
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Preference number: 3 (lower is better) Translates to: LDGCSFRICSEL*LCNSFHWYFVP Trigger: GGGAACAAAATACCAATGGAAGGAGTTACAAAGGCAAAGTTCGGAACAGATCCTGAAGGAACAACCATCCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR TCA 72 bp | ATAGCTAGAGCCACAAGTTCAACCATATGTTTTCTTTaGTTGTTGGTATGGTTCCAAGGAGCTTGGGGGTAC | + |
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Preference number: 3 (lower is better) Translates to: IARATSSTICFL*LLVWFQGAWGY Trigger: GTACCCCCAAGCTCCTTGGAACCATACCAACAATCAAAGAAAACATATGGTTGAACTTGTGGCTCTAGCTAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR CAA 90 bp | GTTCCCCATTTTAAGAAGAAAGGATGTATCCACACTTTGCTCTTCCTTCTTCTTGTATCCATTCCTTTCTaGAGGGACATCTGGGTTCGT | + |
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Preference number: 3 (lower is better) Translates to: VPHFKKKGCIHTLLFLLLVSIPF*RDIWVR Trigger: ACGAACCCAGATGTCCCTCAAGAAAGGAATGGATAC...AAGAAGAAGGAAGAGCAAAGTGTGGATACATCCTTTCTTCTTAAAATGGGGAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR CAA 90 bp | GCTAATATCCACTTATCAGTGAGTACATATCATGTGTTTCCTTTTGTGATTGGGGTATCCATTCCTTTCTaGAGGGACATCTGGGTTCGT | + |
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Preference number: 3 (lower is better) Translates to: ANIHLSVSTYHVFPFVIGVSIPF*RDIWVR Trigger: ACGAACCCAGATGTCCCTCAAGAAAGGAATGGATAC...CCCAATCACAAAAGGAAACACATGATATGTACTCACTGATAAGTGGATATTAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR CAA 90 bp | CATTCAGTACAAAGAACATGGCATCACCCAGAAAGTACATTTTCTAAAGAGCTCGGATGTATCCACACTTaGCTCTTCCTTCTTCTTGAG | + |
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Preference number: 3 (lower is better) Translates to: HSVQRTWHHPESTFSKELGCIHT*LFLLLE Trigger: CTCAAGAAGAAGGAAGAGCAAAGTGTGGATACATCC...GAGCTCTTTAGAAAATGTACTTTCTGGGTGATGCCATGTTCTTTGTACTGAATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR CAA 90 bp | ATTATTAAAATGTCATGGGTAATAGGCAGATGGGGACACTACACAAATGTGTGTATGGTTCCAAGGAGCTaGGGGGTACTGATTAGTTCA | + |
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Preference number: 3 (lower is better) Translates to: IIKMSWVIGRWGHYTNVCMVPRS*GVLISS Trigger: TGAACTAATCAGTACCCCCAAGCTCCTTGGAACCAT...ACACACATTTGTGTAGTGTCCCCATCTGCCTATTACCCATGACATTTTAATAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR CAA 90 bp | GCTAATATCCACTTATCAGTGAGTACATATCATGTGTTTCCTTTTGTGATTGGGCAAGGAAATCTCCCTTaGCAATCTGAAGAGAGAGAG | + |
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Preference number: 3 (lower is better) Translates to: ANIHLSVSTYHVFPFVIGQGNLP*QSEERE Trigger: CTCTCTCTCTTCAGATTGCAAAGGGAGATTTCCTTG...CCCAATCACAAAAGGAAACACATGATATGTACTCACTGATAAGTGGATATTAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR CAA 90 bp | ATTATTAAAATGTCATGGGTAATAGGCAGATGGGGACACTACACAAATGTGTGTTGCTCTTCCTTCTTCTaGAGACTCATGTGTTTTGCA | + |
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Preference number: 3 (lower is better) Translates to: IIKMSWVIGRWGHYTNVCCSSFF*RLMCFA Trigger: TGCAAAACACATGAGTCTCAAGAAGAAGGAAGAGCA...ACACACATTTGTGTAGTGTCCCCATCTGCCTATTACCCATGACATTTTAATAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR CAA 90 bp | CATTCAGTACAAAGAACATGGCATCACCCAGAAAGTACATTTTCTAAAGAGCTCAGAGAGAGAATAAAGTaGTATGTGAGAGATGGATTC | + |
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Preference number: 3 (lower is better) Translates to: HSVQRTWHHPESTFSKELRERIK*YVRDGF Trigger: GAATCCATCTCTCACATACAACTTTATTCTCTCTCT...GAGCTCTTTAGAAAATGTACTTTCTGGGTGATGCCATGTTCTTTGTACTGAATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR CAA 90 bp | GAGAGAGAGAGAATAAAGTTGTATGTGAGAGATGGATTCTATATGTTCTGTCCTATGCTTGATGTCATTTaGCCATTTTCTGTCATAGGA | + |
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Preference number: 3 (lower is better) Translates to: ERERIKLYVRDGFYMFCPMLDVI*PFSVIG Trigger: TCCTATGACAGAAAATGGCAAAATGACATCAAGCAT...AGGACAGAACATATAGAATCCATCTCTCACATACAACTTTATTCTCTCTCTCTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR-3UTR CAA 90 bp | ATCCACTTATCAGTGAGTACATATCATGTGTTTCCTTTTGTGATTGGGTTACCTATGCTTGATGTCATTTaGCCATTTTCTGTCATAGGA | + |
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Preference number: 3 (lower is better) Translates to: IHLSVSTYHVFPFVIGLPMLDVI*PFSVIG Trigger: TCCTATGACAGAAAATGGCAAAATGACATCAAGCAT...AGGTAACCCAATCACAAAAGGAAACACATGATATGTACTCACTGATAAGTGGAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR TCA 72 bp | GTGTTTCCTTTTGTGATTGGGTTACCTCATTTAGGATaGTATCCTCCAAATCTATCCATTTGCCTAAGAATT | + |
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Preference number: 3 (lower is better) Translates to: VFPFVIGLPHLG*YPPNLSICLRI Trigger: AATTCTTAGGCAAATGGATAGATTTGGAGGATATCATCCTAAATGAGGTAACCCAATCACAAAAGGAAACAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| CDS-3UTR GCA 90 bp | ATTTGCCAGGCACTAGCAGAGCCTCACAAGAGACAGCTATATGAGGCTCCTCTCGGCATTTGGAAAGATTaGAGGAAAGATACCTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: ICQALAEPHKRQLYEAPLGIWKD*RKDTSS Trigger: GGAAGAGGTATCTTTCCTGCAATCTTTCCAAATGCC...GAGAGGAGCCTCATATAGCTGTCTCTTGTGAGGCTCTGCTAGTGCCTGGCAAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| CDS-3UTR GCA 90 bp | ATTTGCCAGGCACTAGCAGAGCCTCACAAGAGACAGCTATATGAGGCTCCTCTCTCCTCTGTGTATAACTaGTGTAGAGCAAAGACAGAA | + |
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Preference number: 4 (lower is better) Translates to: ICQALAEPHKRQLYEAPLSSVYN*CRAKTE Trigger: TTCTGTCTTTGCTCTACAGCAGTTATACACAGAGGA...GAGAGGAGCCTCATATAGCTGTCTCTTGTGAGGCTCTGCTAGTGCCTGGCAAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| CDS-3UTR GCA 90 bp | TTCTGTATTTGCCAGGCACTAGCAGAGCCTCACAAGAGACAGCTATATGAGGCTCAGACCAACAACATTTaGAACCTGGAGCAGAATTTG | + |
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Preference number: 4 (lower is better) Translates to: FCICQALAEPHKRQLYEAQTNNI*NLEQNL Trigger: CAAATTCTGCTCCAGGTTGCAAATGTTGTTGGTCTG...AGCCTCATATAGCTGTCTCTTGTGAGGCTCTGCTAGTGCCTGGCAAATACAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| CDS-3UTR GCA 90 bp | TTCTGTATTTGCCAGGCACTAGCAGAGCCTCACAAGAGACAGCTATATGAGGCTGGCATTTGGAAAGATTaGAGGAAAGATACCTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: FCICQALAEPHKRQLYEAGIWKD*RKDTSS Trigger: GGAAGAGGTATCTTTCCTGCAATCTTTCCAAATGCC...AGCCTCATATAGCTGTCTCTTGTGAGGCTCTGCTAGTGCCTGGCAAATACAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| CDS-3UTR GCA 90 bp | TTCTGTATTTGCCAGGCACTAGCAGAGCCTCACAAGAGACAGCTATATGAGGCTAAGGGTCCTATTTCTTaGAGCTCTCTTGCTGATAAA | + |
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Preference number: 4 (lower is better) Translates to: FCICQALAEPHKRQLYEAKGPIS*SSLADK Trigger: TTTATCAGCAAGAGAGCTGCAAGAAATAGGACCCTT...AGCCTCATATAGCTGTCTCTTGTGAGGCTCTGCTAGTGCCTGGCAAATACAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113348.8 |
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| CDS-3UTR GCA 90 bp | AAAGAACATGGCATCACCCAGAAAGTACATTTTCTAAAGAGCTCAACCAGAGTTAAGATACCTCTTCCTTaGTGGGCACGGAGAGGTGAT | + |
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Preference number: 4 (lower is better) Translates to: KEHGITQKVHFLKSSTRVKIPLP*WARRGD Trigger: ATCACCTCTCCGTGCCCAGCAAGGAAGAGGTATCTT...AACTCTGGTTGAGCTCTTTAGAAAATGTACTTTCTGGGTGATGCCATGTTCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| CDS-3UTR GCA 90 bp | CATTCAGTACAAAGAACATGGCATCACCCAGAAAGTACATTTTCTAAAGAGCTCTGTTTAGCAGGACCATaGTGGCATCAAATATGTGGA | + |
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Preference number: 4 (lower is better) Translates to: HSVQRTWHHPESTFSKELCLAGP*WHQICG Trigger: TCCACATATTTGATGCCAGCATGGTCCTGCTAAACA...GAGCTCTTTAGAAAATGTACTTTCTGGGTGATGCCATGTTCTTTGTACTGAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113348.8 |
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| CDS-3UTR GCA 90 bp | AAAGAACATGGCATCACCCAGAAAGTACATTTTCTAAAGAGCTCAACCAGAGTTCAGACCAACAACATTTaGAACCTGGAGCAGAATTTG | + |
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Preference number: 4 (lower is better) Translates to: KEHGITQKVHFLKSSTRVQTNNI*NLEQNL Trigger: CAAATTCTGCTCCAGGTTGCAAATGTTGTTGGTCTG...AACTCTGGTTGAGCTCTTTAGAAAATGTACTTTCTGGGTGATGCCATGTTCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| 3UTR CAA 72 bp | AAAAGAAATAATGTAGCCAGACAAGGAAATCTCCCTTaGCAATCTGAAGAGAGAGAGAGAGAGAGAGAGAGA | + |
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Preference number: 4 (lower is better) Translates to: KRNNVARQGNLP*QSEERERERER Trigger: TCTCTCTCTCTCTCTCTCTCTCTCTTCAGATTGCAAAGGGAGATTTCCTTGTCTGGCTACATTATTTCTTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| CDS-3UTR CAA 90 bp | TGTGAGCATCCACTTCTGTATTTGCCAGGCACTAGCAGAGCCTCACAAGAGACAAACCTGGAGCAGAATTaGAGATACCCGGATATCCAA | + |
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Preference number: 5 (lower is better) Translates to: CEHPLLYLPGTSRASQETNLEQN*RYPDIQ Trigger: TTGGATATCCGGGTATCTCAAATTCTGCTCCAGGTT...TGTCTCTTGTGAGGCTCTGCTAGTGCCTGGCAAATACAGAAGTGGATGCTCACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| CDS-3UTR CAA 90 bp | TTCTGTATTTGCCAGGCACTAGCAGAGCCTCACAAGAGACAGCTATATGAGGCTAACCTGGAGCAGAATTaGAGATACCCGGATATCCAA | + |
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Preference number: 5 (lower is better) Translates to: FCICQALAEPHKRQLYEANLEQN*RYPDIQ Trigger: TTGGATATCCGGGTATCTCAAATTCTGCTCCAGGTT...AGCCTCATATAGCTGTCTCTTGTGAGGCTCTGCTAGTGCCTGGCAAATACAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 |
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| CDS TCA 72 bp | ATGGCAGGTGTAGTAATGGCAATCTCTCAGGTGGCTTaGGTTGTGGTTGTGGTGGCAGATGTAGGCCTCCCA | + |
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Preference number: 6 (lower is better) Translates to: MAGVVMAISQVA*VVVVVADVGLP Trigger: TGGGAGGCCTACATCTGCCACCACAACCACAACTCAAGCCACCTGAGAGATTGCCATTACTACACCTGCCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 ENSMUST00000169445.3 |
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| CDS CAA 72 bp | TATGGCAGGTGTAGTAATGGCAATCTCTCAGGTGGCTaGAGTTGTGGTTGTGGTGGCAGATGTAGGCCTCCC | + |
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Preference number: 6 (lower is better) Translates to: YGRCSNGNLSGG*SCGCGGRCRPP Trigger: GGGAGGCCTACATCTGCCACCACAACCACAACTCAAGCCACCTGAGAGATTGCCATTACTACACCTGCCATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 ENSMUST00000169445.3 |
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| CDS GCA 72 bp | TTATTTGGTGATTGGCAGACTTGTTTAGCAGGACCATaGTGGCATCAAATATGTGGAAACCAGCAAGGGTCC | + |
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Preference number: 6 (lower is better) Translates to: LFGDWQTCLAGP*WHQICGNQQGS Trigger: GGACCCTTGCTGGTTTCCACATATTTGATGCCAGCATGGTCCTGCTAAACAAGTCTGCCAATCACCAAATAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113348.8 ENSMUST00000169445.3 |
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| CDS GCA 72 bp | GACAGAACAAACTGTCCCAACCAGACCAACAACATTTaGAACCTGGAGCAGAATTTGAGATACCCGGATATC | + |
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Preference number: 6 (lower is better) Translates to: DRTNCPNQTNNI*NLEQNLRYPDI Trigger: GATATCCGGGTATCTCAAATTCTGCTCCAGGTTGCAAATGTTGTTGGTCTGGTTGGGACAGTTTGTTCTGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 ENSMUST00000169445.3 |
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| CDS CAA 72 bp | AGACAGAACAAACTGTCCCAACCAGACCAACAACATTaGCAACCTGGAGCAGAATTTGAGATACCCGGATAT | + |
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Preference number: 6 (lower is better) Translates to: RQNKLSQPDQQH*QPGAEFEIPGY Trigger: ATATCCGGGTATCTCAAATTCTGCTCCAGGTTGCAAATGTTGTTGGTCTGGTTGGGACAGTTTGTTCTGTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 ENSMUST00000169445.3 |
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| CDS CAA 72 bp | AACCAGACCAACAACATTTGCAACCTGGAGCAGAATTaGAGATACCCGGATATCCAAAGGAACAAGGTTGTT | + |
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Preference number: 6 (lower is better) Translates to: NQTNNICNLEQN*RYPDIQRNKVV Trigger: AACAACCTTGTTCCTTTGGATATCCGGGTATCTCAAATTCTGCTCCAGGTTGCAAATGTTGTTGGTCTGGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000113343.8 ENSMUST00000113348.8 ENSMUST00000169445.3 |
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