Pregenerated sensors for CLDN34B4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000073085

Ensembl transcript IDs: ENSMUST00000101419.2, ENSMUST00000178974.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GTAGACTTAAAGACCACAGGGTCTTGGAAGTGCCACACACGCCACTaGGGTAAGCCTATGGAGATACAGCAAATTAGCCAAGCCACAGTT	+
Preference number: 5 (lower is better) Translates to: VDLKTTGSWKCHTRH*GKPMEIQQISQATV Trigger: AACTGTGGCTTGGCTAATTTGCTGTATCTCCATAGGCTTACCTCAGTGGCGTGTGTGGCACTTCCAAGACCCTGTGGTCTTTAAGTCTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101419.2 ENSMUST00000178974.2
CDS GCA 90 bp	GTCCTCATCATACTGGAGAGTACAGACTCTCCACATGCCAACAAATaGTGTGGTAGACTTAAAGACCACAGGGTCTTGGAAGTGCCACAC	+
Preference number: 5 (lower is better) Translates to: VLIILESTDSPHANK*CGRLKDHRVLEVPH Trigger: GTGTGGCACTTCCAAGACCCTGTGGTCTTTAAGTCTACCACAGCATTTGTTGGCATGTGGAGAGTCTGTACTCTCCAGTATGATGAGGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101419.2 ENSMUST00000178974.2
CDS CCA 90 bp	AGCTATAAATGCCAAGGCCATGGCACTTCCAATTTCCTGAGTGTCTaGCTGGGAAGGTATATTGAAAGATGGTGGAAATATTATACCCTC	+
Preference number: 5 (lower is better) Translates to: SYKCQGHGTSNFLSV*LGRYIERWWKYYTL Trigger: GAGGGTATAATATTTCCACCATCTTTCAATATACCTTCCCAGCCAGACACTCAGGAAATTGGAAGTGCCATGGCCTTGGCATTTATAGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101419.2 ENSMUST00000178974.2
CDS CCA 90 bp	ACTTCCAATTTCCTGAGTGTCTGGCTGGGAAGGTATATTGAAAGATaGTGGAAATATTATACCCTCCTGGAATATGATAGATACATAATT	+
Preference number: 5 (lower is better) Translates to: TSNFLSVWLGRYIER*WKYYTLLEYDRYII Trigger: AATTATGTATCTATCATATTCCAGGAGGGTATAATATTTCCACCATCTTTCAATATACCTTCCCAGCCAGACACTCAGGAAATTGGAAGT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101419.2 ENSMUST00000178974.2
CDS GCA 72 bp	ATACTGGAGAGTACAGACTCTCCACATGCCAACAAATaGTGTGGTAGACTTAAAGACCACAGGGTCTTGGAA	+
Preference number: 6 (lower is better) Translates to: ILESTDSPHANK*CGRLKDHRVLE Trigger: TTCCAAGACCCTGTGGTCTTTAAGTCTACCACAGCATTTGTTGGCATGTGGAGAGTCTGTACTCTCCAGTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101419.2 ENSMUST00000178974.2
CDS CCA 72 bp	TGCCAAGGCCATGGCACTTCCAATTTCCTGAGTGTCTaGCTGGGAAGGTATATTGAAAGATGGTGGAAATAT	+
Preference number: 6 (lower is better) Translates to: CQGHGTSNFLSV*LGRYIERWWKY Trigger: ATATTTCCACCATCTTTCAATATACCTTCCCAGCCAGACACTCAGGAAATTGGAAGTGCCATGGCCTTGGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101419.2 ENSMUST00000178974.2
CDS CAA 72 bp	AGCCTATGGAGATACAGCAAATTAGCCAAGCCACAGTaGTCAAAGCAAAGCCTCCCATTTGGCTATTGCAAC	+
Preference number: 6 (lower is better) Translates to: SLWRYSKLAKPQ*SKQSLPFGYCN Trigger: GTTGCAATAGCCAAATGGGAGGCTTTGCTTTGACAACTGTGGCTTGGCTAATTTGCTGTATCTCCATAGGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101419.2 ENSMUST00000178974.2
CDS TCA 72 bp	TTCCAATTTCCTGAGTGTCTGGCTGGGAAGGTATATTaGAAGATGGTGGAAATATTATACCCTCCTGGAATA	+
Preference number: 6 (lower is better) Translates to: FQFPECLAGKVY*KMVEILYPPGI Trigger: TATTCCAGGAGGGTATAATATTTCCACCATCTTTCAATATACCTTCCCAGCCAGACACTCAGGAAATTGGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101419.2 ENSMUST00000178974.2
CDS CAA 72 bp	GATATTCAATGGAAGGAAGGTATCATGGTAGTTGTATaGGTGACATATTCTCATATTCCTAAAGTCCTCATC	+
Preference number: 6 (lower is better) Translates to: DIQWKEGIMVVV*VTYSHIPKVLI Trigger: GATGAGGACTTTAGGAATATGAGAATATGTCACCAATACAACTACCATGATACCTTCCTTCCATTGAATATC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101419.2 ENSMUST00000178974.2

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