Pregenerated sensors for CLDN34B3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071738Ensembl transcript IDs: ENSMUST00000096389.5
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | GGCCACAATTGGCATCCTTTCAAGTTCTTTGTAAATTCGTGTAGACATGTGAAGTGCCACACTTGCCACTaGGGGAGGCCTGTGGATATG | + |
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Preference number: 4 (lower is better) Translates to: GHNWHPFKFFVNSCRHVKCHTCH*GRPVDM Trigger: CATATCCACAGGCCTCCCTCAGTGGCAAGTGTGGCA...CTTCACATGTCTACACGAATTTACAAAGAACTTGAAAGGATGCCAATTGTGGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS-3UTR GCA 90 bp | GGCCACAATTGGCATCCTTTCAAGTTCTTTGTAAATTCGTGTAGACATGTGAAGTGTCTGTGTGGAAAATaGAGGCTCTCCACATGCCCA | + |
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Preference number: 4 (lower is better) Translates to: GHNWHPFKFFVNSCRHVKCLCGK*RLSTCP Trigger: TGGGCATGTGGAGAGCCTGCATTTTCCACACAGACA...CTTCACATGTCTACACGAATTTACAAAGAACTTGAAAGGATGCCAATTGTGGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS-3UTR GCA 90 bp | GGCCACAATTGGCATCCTTTCAAGTTCTTTGTAAATTCGTGTAGACATGTGAAGTGGTGTTGCTGGAGTTaGTGTCTGTGTGGAAAATGC | + |
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Preference number: 4 (lower is better) Translates to: GHNWHPFKFFVNSCRHVKWCCWS*CLCGKC Trigger: GCATTTTCCACACAGACAGCAACTCCAGCAACACCA...CTTCACATGTCTACACGAATTTACAAAGAACTTGAAAGGATGCCAATTGTGGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS-3UTR CCA 90 bp | GTCATAGGCCACAATTGGCATCCTTTCAAGTTCTTTGTAAATTCGTGTAGACATGAGTTGCTGTCTGTGTaGAAAATGCAGGCTCTCCAC | + |
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Preference number: 4 (lower is better) Translates to: VIGHNWHPFKFFVNSCRHELLSV*KMQALH Trigger: GTGGAGAGCCTGCATTTTCCACACAGACAGCAACTC...ATGTCTACACGAATTTACAAAGAACTTGAAAGGATGCCAATTGTGGCCTATGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS-3UTR TCA 90 bp | GTCATAGGCCACAATTGGCATCCTTTCAAGTTCTTTGTAAATTCGTGTAGACATGCTGGAAAGGCAAATTaGAAGATGGTGGGAAGGCAA | + |
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Preference number: 4 (lower is better) Translates to: VIGHNWHPFKFFVNSCRHAGKAN*KMVGRQ Trigger: TTGCCTTCCCACCATCTTTCAATTTGCCTTTCCAGC...ATGTCTACACGAATTTACAAAGAACTTGAAAGGATGCCAATTGTGGCCTATGAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS-3UTR CCA 90 bp | GTCATAGGCCACAATTGGCATCCTTTCAAGTTCTTTGTAAATTCGTGTAGACATATACTCTGGTGTTGCTaGAGTTGCTGTCTGTGTGGA | + |
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Preference number: 4 (lower is better) Translates to: VIGHNWHPFKFFVNSCRHILWCC*SCCLCG Trigger: TCCACACAGACAGCAACTCCAGCAACACCAGAGTAT...ATGTCTACACGAATTTACAAAGAACTTGAAAGGATGCCAATTGTGGCCTATGAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS-3UTR GCA 90 bp | GTCATAGGCCACAATTGGCATCCTTTCAAGTTCTTTGTAAATTCGTGTAGACATAACATACTCTGGTGTTaGTGGAGTTGCTGTCTGTGT | + |
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Preference number: 4 (lower is better) Translates to: VIGHNWHPFKFFVNSCRHNILWC*WSCCLC Trigger: ACACAGACAGCAACTCCAGCAACACCAGAGTATGTT...ATGTCTACACGAATTTACAAAGAACTTGAAAGGATGCCAATTGTGGCCTATGAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS-3UTR GCA 90 bp | GTCATAGGCCACAATTGGCATCCTTTCAAGTTCTTTGTAAATTCGTGTAGACATTGGAATGGGGCACCTTaGCTATGGCTAAATTTGAAG | + |
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Preference number: 4 (lower is better) Translates to: VIGHNWHPFKFFVNSCRHWNGAP*LWLNLK Trigger: CTTCAAATTTAGCCATAGGCAAGGTGCCCCATTCCA...ATGTCTACACGAATTTACAAAGAACTTGAAAGGATGCCAATTGTGGCCTATGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS-3UTR CCA 90 bp | GTCATAGGCCACAATTGGCATCCTTTCAAGTTCTTTGTAAATTCGTGTAGACATGCAAAACCTCCCATTTaGCGATGGCACTTTTTCAAT | + |
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Preference number: 4 (lower is better) Translates to: VIGHNWHPFKFFVNSCRHAKPPI*RWHFFN Trigger: ATTGAAAAAGTGCCATCGCCAAATGGGAGGTTTTGC...ATGTCTACACGAATTTACAAAGAACTTGAAAGGATGCCAATTGTGGCCTATGAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS-3UTR CCA 90 bp | GGCCACAATTGGCATCCTTTCAAGTTCTTTGTAAATTCGTGTAGACATGTGAAGTTCCGAATGTCTGGCTaGAAAGGCAAATTGAAAGAT | + |
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Preference number: 4 (lower is better) Translates to: GHNWHPFKFFVNSCRHVKFRMSG*KGKLKD Trigger: ATCTTTCAATTTGCCTTTCCAGCCAGACATTCGGAA...CTTCACATGTCTACACGAATTTACAAAGAACTTGAAAGGATGCCAATTGTGGCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS-3UTR CCA 90 bp | GTCATAGGCCACAATTGGCATCCTTTCAAGTTCTTTGTAAATTCGTGTAGACATCATCTTCCGAATGTCTaGCTGGAAAGGCAAATTGAA | + |
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Preference number: 4 (lower is better) Translates to: VIGHNWHPFKFFVNSCRHHLPNV*LERQIE Trigger: TTCAATTTGCCTTTCCAGCCAGACATTCGGAAGATG...ATGTCTACACGAATTTACAAAGAACTTGAAAGGATGCCAATTGTGGCCTATGAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS-3UTR TCA 90 bp | GTCATAGGCCACAATTGGCATCCTTTCAAGTTCTTTGTAAATTCGTGTAGACATGATGTTCAGTATGCCTaGAAGTCTAAATGGATTGCA | + |
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Preference number: 4 (lower is better) Translates to: VIGHNWHPFKFFVNSCRHDVQYA*KSKWIA Trigger: TGCAATCCATTTAGACTTTCAGGCATACTGAACATC...ATGTCTACACGAATTTACAAAGAACTTGAAAGGATGCCAATTGTGGCCTATGAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS CCA 90 bp | TCACAGGATCTTCATAGTGCCACACTTGCCACTGAGGGAGGCCTGTaGATATGCAGCAGAGTAGCCAGGCCACAGTGGTCAAAGCAAAAC | + |
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Preference number: 5 (lower is better) Translates to: SQDLHSATLATEGGL*ICSRVARPQWSKQN Trigger: GTTTTGCTTTGACCACTGTGGCCTGGCTACTCTGCTGCATATCCACAGGCCTCCCTCAGTGGCAAGTGTGGCACTATGAAGATCCTGTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS CCA 90 bp | ACTGAGGGAGGCCTGTGGATATGCAGCAGAGTAGCCAGGCCACAGTaGTCAAAGCAAAACCTCCCATTTGGCGATGGCACTTTTTCAATG | + |
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Preference number: 5 (lower is better) Translates to: TEGGLWICSRVARPQ*SKQNLPFGDGTFSM Trigger: CATTGAAAAAGTGCCATCGCCAAATGGGAGGTTTTGCTTTGACCACTGTGGCCTGGCTACTCTGCTGCATATCCACAGGCCTCCCTCAGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS CCA 90 bp | GAATGGAGCCATCGTATTTGTATTGGTAACATACTCTGGTGTTGCTaGAGTTGCTGTCTGTGTGGAAAATGCAGGCTCTCCACATGCCCA | + |
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Preference number: 5 (lower is better) Translates to: EWSHRICIGNILWCC*SCCLCGKCRLSTCP Trigger: TGGGCATGTGGAGAGCCTGCATTTTCCACACAGACAGCAACTCCAGCAACACCAGAGTATGTTACCAATACAAATACGATGGCTCCATTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS GCA 90 bp | AATGAATGGAGCCATCGTATTTGTATTGGTAACATACTCTGGTGTTaGTGGAGTTGCTGTCTGTGTGGAAAATGCAGGCTCTCCACATGC | + |
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Preference number: 5 (lower is better) Translates to: NEWSHRICIGNILWC*WSCCLCGKCRLSTC Trigger: GCATGTGGAGAGCCTGCATTTTCCACACAGACAGCAACTCCAGCAACACCAGAGTATGTTACCAATACAAATACGATGGCTCCATTCATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS-3UTR CAA 90 bp | GTCATAGGCCACAATTGGCATCCTTTCAAGTTCTTTGTAAATTCGTGTAGACATTTCATAGTGCCACACTaGCCACTGAGGGAGGCCTGT | + |
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Preference number: 5 (lower is better) Translates to: VIGHNWHPFKFFVNSCRHFIVPH*PLREAC Trigger: ACAGGCCTCCCTCAGTGGCAAGTGTGGCACTATGAA...ATGTCTACACGAATTTACAAAGAACTTGAAAGGATGCCAATTGTGGCCTATGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS-3UTR CAA 90 bp | GGCCACAATTGGCATCCTTTCAAGTTCTTTGTAAATTCGTGTAGACATGTGAAGAAAGCCACTGTAGGCTaGAGGATCACAGGATCTTCA | + |
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Preference number: 5 (lower is better) Translates to: GHNWHPFKFFVNSCRHVKKATVG*RITGSS Trigger: TGAAGATCCTGTGATCCTCAAGCCTACAGTGGCTTT...CTTCACATGTCTACACGAATTTACAAAGAACTTGAAAGGATGCCAATTGTGGCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS-3UTR CAA 90 bp | GTCATAGGCCACAATTGGCATCCTTTCAAGTTCTTTGTAAATTCGTGTAGACATCTGGTGTTGCTGGAGTaGCTGTCTGTGTGGAAAATG | + |
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Preference number: 5 (lower is better) Translates to: VIGHNWHPFKFFVNSCRHLVLLE*LSVWKM Trigger: CATTTTCCACACAGACAGCAACTCCAGCAACACCAG...ATGTCTACACGAATTTACAAAGAACTTGAAAGGATGCCAATTGTGGCCTATGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS CCA 90 bp | TATATAAATGAATGGAGCCATCGTATTTGTATTGGTAACATACTCTaGTGTTGCTGGAGTTGCTGTCTGTGTGGAAAATGCAGGCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: YINEWSHRICIGNIL*CCWSCCLCGKCRLS Trigger: GGAGAGCCTGCATTTTCCACACAGACAGCAACTCCAGCAACACCAGAGTATGTTACCAATACAAATACGATGGCTCCATTCATTTATATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS-3UTR CAA 90 bp | GGCCACAATTGGCATCCTTTCAAGTTCTTTGTAAATTCGTGTAGACATGTGAAGGCCATCGTATTTGTATaGGTAACATACTCTGGTGTT | + |
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Preference number: 5 (lower is better) Translates to: GHNWHPFKFFVNSCRHVKAIVFV*VTYSGV Trigger: AACACCAGAGTATGTTACCAATACAAATACGATGGC...CTTCACATGTCTACACGAATTTACAAAGAACTTGAAAGGATGCCAATTGTGGCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS-3UTR CAA 90 bp | GGCCACAATTGGCATCCTTTCAAGTTCTTTGTAAATTCGTGTAGACATGTGAAGTGCCTATGGCTAAATTaGAAGAAAGGCAAATTGTGC | + |
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Preference number: 5 (lower is better) Translates to: GHNWHPFKFFVNSCRHVKCLWLN*KKGKLC Trigger: GCACAATTTGCCTTTCTTCAAATTTAGCCATAGGCA...CTTCACATGTCTACACGAATTTACAAAGAACTTGAAAGGATGCCAATTGTGGCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS-3UTR CAA 90 bp | GGCCACAATTGGCATCCTTTCAAGTTCTTTGTAAATTCGTGTAGACATGTGAAGTTGAAGAAAGGCAAATaGTGCCACTTAGTAGAAAGA | + |
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Preference number: 5 (lower is better) Translates to: GHNWHPFKFFVNSCRHVKLKKGK*CHLVER Trigger: TCTTTCTACTAAGTGGCACAATTTGCCTTTCTTCAA...CTTCACATGTCTACACGAATTTACAAAGAACTTGAAAGGATGCCAATTGTGGCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS CCA 72 bp | GGCCTGTGGATATGCAGCAGAGTAGCCAGGCCACAGTaGTCAAAGCAAAACCTCCCATTTGGCGATGGCACT | + |
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Preference number: 6 (lower is better) Translates to: GLWICSRVARPQ*SKQNLPFGDGT Trigger: AGTGCCATCGCCAAATGGGAGGTTTTGCTTTGACCACTGTGGCCTGGCTACTCTGCTGCATATCCACAGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS CCA 72 bp | TGCCAAAGCCGTGGCACTTCCCATCTTCCGAATGTCTaGCTGGAAAGGCAAATTGAAAGATGGTGGGAAGGC | + |
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Preference number: 6 (lower is better) Translates to: CQSRGTSHLPNV*LERQIERWWEG Trigger: GCCTTCCCACCATCTTTCAATTTGCCTTTCCAGCCAGACATTCGGAAGATGGGAAGTGCCACGGCTTTGGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS CCA 72 bp | CTTCCGAATGTCTGGCTGGAAAGGCAAATTGAAAGATaGTGGGAAGGCAATCCCCCATTTGCTCATGATGGC | + |
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Preference number: 6 (lower is better) Translates to: LPNVWLERQIER*WEGNPPFAHDG Trigger: GCCATCATGAGCAAATGGGGGATTGCCTTCCCACCATCTTTCAATTTGCCTTTCCAGCCAGACATTCGGAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS CCA 72 bp | AAAGCCGTGGCACTTCCCATCTTCCGAATGTCTGGCTaGAAAGGCAAATTGAAAGATGGTGGGAAGGCAATC | + |
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Preference number: 6 (lower is better) Translates to: KAVALPIFRMSG*KGKLKDGGKAI Trigger: GATTGCCTTCCCACCATCTTTCAATTTGCCTTTCCAGCCAGACATTCGGAAGATGGGAAGTGCCACGGCTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS TCA 72 bp | TTCCCATCTTCCGAATGTCTGGCTGGAAAGGCAAATTaGAAGATGGTGGGAAGGCAATCCCCCATTTGCTCA | + |
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Preference number: 6 (lower is better) Translates to: FPSSECLAGKAN*KMVGRQSPICS Trigger: TGAGCAAATGGGGGATTGCCTTCCCACCATCTTTCAATTTGCCTTTCCAGCCAGACATTCGGAAGATGGGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS CCA 72 bp | CCGAATGTCTGGCTGGAAAGGCAAATTGAAAGATGGTaGGAAGGCAATCCCCCATTTGCTCATGATGGCTAT | + |
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Preference number: 6 (lower is better) Translates to: PNVWLERQIERW*EGNPPFAHDGY Trigger: ATAGCCATCATGAGCAAATGGGGGATTGCCTTCCCACCATCTTTCAATTTGCCTTTCCAGCCAGACATTCGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS GCA 72 bp | AGCCATCGTATTTGTATTGGTAACATACTCTGGTGTTaGTGGAGTTGCTGTCTGTGTGGAAAATGCAGGCTC | + |
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Preference number: 6 (lower is better) Translates to: SHRICIGNILWC*WSCCLCGKCRL Trigger: GAGCCTGCATTTTCCACACAGACAGCAACTCCAGCAACACCAGAGTATGTTACCAATACAAATACGATGGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS CCA 72 bp | CATCGTATTTGTATTGGTAACATACTCTGGTGTTGCTaGAGTTGCTGTCTGTGTGGAAAATGCAGGCTCTCC | + |
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Preference number: 6 (lower is better) Translates to: HRICIGNILWCC*SCCLCGKCRLS Trigger: GGAGAGCCTGCATTTTCCACACAGACAGCAACTCCAGCAACACCAGAGTATGTTACCAATACAAATACGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS TCA 72 bp | GTAAAGAAAGCTGCTAGCAATGATGTTCAGTATGCCTaGAAGTCTAAATGGATTGCAGGTGGCATTCCTCCG | + |
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Preference number: 6 (lower is better) Translates to: VKKAASNDVQYA*KSKWIAGGIPP Trigger: CGGAGGAATGCCACCTGCAATCCATTTAGACTTTCAGGCATACTGAACATCATTGCTAGCAGCTTTCTTTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS CCA 72 bp | GAATGGAGCCATCGTATTTGTATTGGTAACATACTCTaGTGTTGCTGGAGTTGCTGTCTGTGTGGAAAATGC | + |
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Preference number: 6 (lower is better) Translates to: EWSHRICIGNIL*CCWSCCLCGKC Trigger: GCATTTTCCACACAGACAGCAACTCCAGCAACACCAGAGTATGTTACCAATACAAATACGATGGCTCCATTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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| CDS CAA 72 bp | ACATTTTGGAATGGGGCACCTTGCCTATGGCTAAATTaGAAGAAAGGCAAATTGTGCCACTTAGTAGAAAGA | + |
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Preference number: 6 (lower is better) Translates to: TFWNGAPCLWLN*KKGKLCHLVER Trigger: TCTTTCTACTAAGTGGCACAATTTGCCTTTCTTCAAATTTAGCCATAGGCAAGGTGCCCCATTCCAAAATGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096389.5 |
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