Pregenerated sensors for CLDN34B2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000057402Ensembl transcript IDs: ENSMUST00000076671.4
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CAA 90 bp | TTTCCCGCAGGCCACAATCGGCATCCTTTCAAGTTCTTTGAAAATTaGTGTAGACATGTAAAGAATACTCATTATCTTTGCTGGCATTTC | + |
Preference number: 2 (lower is better) Translates to: FPAGHNRHPFKFFEN*CRHVKNTHYLCWHF Trigger: GAAATGCCAGCAAAGATAATGAGTATTCTTTACATGTCTACACAAATTTTCAAAGAACTTGAAAGGATGCCGATTGTGGCCTGCGGGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076671.4 |
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3UTR CAA 72 bp | GGCCACAATCGGCATCCTTTCAAGTTCTTTGAAAATTaGTGTAGACATGTAAAGAATACTCATTATCTTTGC | + |
Preference number: 4 (lower is better) Translates to: GHNRHPFKFFEN*CRHVKNTHYLC Trigger: GCAAAGATAATGAGTATTCTTTACATGTCTACACAAATTTTCAAAGAACTTGAAAGGATGCCGATTGTGGCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076671.4 |
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CDS CCA 90 bp | CCACAGGATCTTCATAGTGCCACACTTGCCACTGAGGGAGGCCTGTaGATATGCAGCAGAGTAGCCAGGCCACAGTGGTCAAAGCAAAAC | + |
Preference number: 5 (lower is better) Translates to: PQDLHSATLATEGGL*ICSRVARPQWSKQN Trigger: GTTTTGCTTTGACCACTGTGGCCTGGCTACTCTGCTGCATATCCACAGGCCTCCCTCAGTGGCAAGTGTGGCACTATGAAGATCCTGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076671.4 |
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CDS CCA 90 bp | ACTGAGGGAGGCCTGTGGATATGCAGCAGAGTAGCCAGGCCACAGTaGTCAAAGCAAAACCTCCCATTTGGCCATGGCACTTTTTCAACG | + |
Preference number: 5 (lower is better) Translates to: TEGGLWICSRVARPQ*SKQNLPFGHGTFST Trigger: CGTTGAAAAAGTGCCATGGCCAAATGGGAGGTTTTGCTTTGACCACTGTGGCCTGGCTACTCTGCTGCATATCCACAGGCCTCCCTCAGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076671.4 |
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CDS CCA 90 bp | GAATGGAGCCATCGTAGTTGTATTGGTAACATACTCTGGTGTTGCTaGAGTTTCTGTCGGTGTGGAAAACGCAGGCTCTCCACATGCCCA | + |
Preference number: 5 (lower is better) Translates to: EWSHRSCIGNILWCC*SFCRCGKRRLSTCP Trigger: TGGGCATGTGGAGAGCCTGCGTTTTCCACACCGACAGAAACTCCAGCAACACCAGAGTATGTTACCAATACAACTACGATGGCTCCATTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076671.4 |
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CDS GCA 72 bp | AGTGCCACACTTGCCACTGAGGGAGGCCTGTGGATATaGAGCAGAGTAGCCAGGCCACAGTGGTCAAAGCAA | + |
Preference number: 6 (lower is better) Translates to: SATLATEGGLWI*SRVARPQWSKQ Trigger: TTGCTTTGACCACTGTGGCCTGGCTACTCTGCTGCATATCCACAGGCCTCCCTCAGTGGCAAGTGTGGCACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076671.4 |
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CDS CCA 72 bp | CTTCATAGTGCCACACTTGCCACTGAGGGAGGCCTGTaGATATGCAGCAGAGTAGCCAGGCCACAGTGGTCA | + |
Preference number: 6 (lower is better) Translates to: LHSATLATEGGL*ICSRVARPQWS Trigger: TGACCACTGTGGCCTGGCTACTCTGCTGCATATCCACAGGCCTCCCTCAGTGGCAAGTGTGGCACTATGAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076671.4 |
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CDS CCA 72 bp | GGCCTGTGGATATGCAGCAGAGTAGCCAGGCCACAGTaGTCAAAGCAAAACCTCCCATTTGGCCATGGCACT | + |
Preference number: 6 (lower is better) Translates to: GLWICSRVARPQ*SKQNLPFGHGT Trigger: AGTGCCATGGCCAAATGGGAGGTTTTGCTTTGACCACTGTGGCCTGGCTACTCTGCTGCATATCCACAGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076671.4 |
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CDS TCA 72 bp | TTCCCATCTTCCGAGTGTCTGGCTGGAAAGGCAAATTaGAAGATGGTGGGAAGGCAATCCCCCATTTGCTCA | + |
Preference number: 6 (lower is better) Translates to: FPSSECLAGKAN*KMVGRQSPICS Trigger: TGAGCAAATGGGGGATTGCCTTCCCACCATCTTTCAATTTGCCTTTCCAGCCAGACACTCGGAAGATGGGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076671.4 |
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CDS CAA 90 bp | AAGCTGCTAGCAATGATGTTCAGTATGCCTGAAAGTCTGAAAGGATaGCAGGTGGCATTCCTCCGTACTCTTCCCATATGCACATTCGAA | + |
Preference number: 6 (lower is better) Translates to: KLLAMMFSMPESLKG*QVAFLRTLPICTFE Trigger: TTCGAATGTGCATATGGGAAGAGTACGGAGGAATGCCACCTGCAATCCTTTCAGACTTTCAGGCATACTGAACATCATTGCTAGCAGCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076671.4 |
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CDS GCA 72 bp | CCAAAAAGCCCAAGAAAGCTAGAAACCAGCAGCAAGTaGTGGTTTCCTCGAATATACAAAGGAATGGAGCCA | + |
Preference number: 6 (lower is better) Translates to: PKSPRKLETSSK*WFPRIYKGMEP Trigger: TGGCTCCATTCCTTTGTATATTCGAGGAAACCAGCACTTGCTGCTGGTTTCTAGCTTTCTTGGGCTTTTTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076671.4 |
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CDS CCA 72 bp | AAAAGCCCAAGAAAGCTAGAAACCAGCAGCAAGTGCTaGTTTCCTCGAATATACAAAGGAATGGAGCCATCG | + |
Preference number: 6 (lower is better) Translates to: KSPRKLETSSKC*FPRIYKGMEPS Trigger: CGATGGCTCCATTCCTTTGTATATTCGAGGAAACCAGCACTTGCTGCTGGTTTCTAGCTTTCTTGGGCTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076671.4 |