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Pregenerated sensors for CLDN34B2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000057402

Ensembl transcript IDs: ENSMUST00000076671.4

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp TTTCCCGCAGGCCACAATCGGCATCCTTTCAAGTTCTTTGAAAATTaGTGTAGACATGTAAAGAATACTCATTATCTTTGCTGGCATTTC +
Preference number: 2 (lower is better)
Translates to: FPAGHNRHPFKFFEN*CRHVKNTHYLCWHF
Trigger: GAAATGCCAGCAAAGATAATGAGTATTCTTTACATGTCTACACAAATTTTCAAAGAACTTGAAAGGATGCCGATTGTGGCCTGCGGGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076671.4
3UTR CAA 72 bp GGCCACAATCGGCATCCTTTCAAGTTCTTTGAAAATTaGTGTAGACATGTAAAGAATACTCATTATCTTTGC +
Preference number: 4 (lower is better)
Translates to: GHNRHPFKFFEN*CRHVKNTHYLC
Trigger: GCAAAGATAATGAGTATTCTTTACATGTCTACACAAATTTTCAAAGAACTTGAAAGGATGCCGATTGTGGCC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076671.4
CDS CCA 90 bp CCACAGGATCTTCATAGTGCCACACTTGCCACTGAGGGAGGCCTGTaGATATGCAGCAGAGTAGCCAGGCCACAGTGGTCAAAGCAAAAC +
Preference number: 5 (lower is better)
Translates to: PQDLHSATLATEGGL*ICSRVARPQWSKQN
Trigger: GTTTTGCTTTGACCACTGTGGCCTGGCTACTCTGCTGCATATCCACAGGCCTCCCTCAGTGGCAAGTGTGGCACTATGAAGATCCTGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076671.4
CDS CCA 90 bp ACTGAGGGAGGCCTGTGGATATGCAGCAGAGTAGCCAGGCCACAGTaGTCAAAGCAAAACCTCCCATTTGGCCATGGCACTTTTTCAACG +
Preference number: 5 (lower is better)
Translates to: TEGGLWICSRVARPQ*SKQNLPFGHGTFST
Trigger: CGTTGAAAAAGTGCCATGGCCAAATGGGAGGTTTTGCTTTGACCACTGTGGCCTGGCTACTCTGCTGCATATCCACAGGCCTCCCTCAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076671.4
CDS CCA 90 bp GAATGGAGCCATCGTAGTTGTATTGGTAACATACTCTGGTGTTGCTaGAGTTTCTGTCGGTGTGGAAAACGCAGGCTCTCCACATGCCCA +
Preference number: 5 (lower is better)
Translates to: EWSHRSCIGNILWCC*SFCRCGKRRLSTCP
Trigger: TGGGCATGTGGAGAGCCTGCGTTTTCCACACCGACAGAAACTCCAGCAACACCAGAGTATGTTACCAATACAACTACGATGGCTCCATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076671.4
CDS GCA 72 bp AGTGCCACACTTGCCACTGAGGGAGGCCTGTGGATATaGAGCAGAGTAGCCAGGCCACAGTGGTCAAAGCAA +
Preference number: 6 (lower is better)
Translates to: SATLATEGGLWI*SRVARPQWSKQ
Trigger: TTGCTTTGACCACTGTGGCCTGGCTACTCTGCTGCATATCCACAGGCCTCCCTCAGTGGCAAGTGTGGCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076671.4
CDS CCA 72 bp CTTCATAGTGCCACACTTGCCACTGAGGGAGGCCTGTaGATATGCAGCAGAGTAGCCAGGCCACAGTGGTCA +
Preference number: 6 (lower is better)
Translates to: LHSATLATEGGL*ICSRVARPQWS
Trigger: TGACCACTGTGGCCTGGCTACTCTGCTGCATATCCACAGGCCTCCCTCAGTGGCAAGTGTGGCACTATGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076671.4
CDS CCA 72 bp GGCCTGTGGATATGCAGCAGAGTAGCCAGGCCACAGTaGTCAAAGCAAAACCTCCCATTTGGCCATGGCACT +
Preference number: 6 (lower is better)
Translates to: GLWICSRVARPQ*SKQNLPFGHGT
Trigger: AGTGCCATGGCCAAATGGGAGGTTTTGCTTTGACCACTGTGGCCTGGCTACTCTGCTGCATATCCACAGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076671.4
CDS TCA 72 bp TTCCCATCTTCCGAGTGTCTGGCTGGAAAGGCAAATTaGAAGATGGTGGGAAGGCAATCCCCCATTTGCTCA +
Preference number: 6 (lower is better)
Translates to: FPSSECLAGKAN*KMVGRQSPICS
Trigger: TGAGCAAATGGGGGATTGCCTTCCCACCATCTTTCAATTTGCCTTTCCAGCCAGACACTCGGAAGATGGGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076671.4
CDS CAA 90 bp AAGCTGCTAGCAATGATGTTCAGTATGCCTGAAAGTCTGAAAGGATaGCAGGTGGCATTCCTCCGTACTCTTCCCATATGCACATTCGAA +
Preference number: 6 (lower is better)
Translates to: KLLAMMFSMPESLKG*QVAFLRTLPICTFE
Trigger: TTCGAATGTGCATATGGGAAGAGTACGGAGGAATGCCACCTGCAATCCTTTCAGACTTTCAGGCATACTGAACATCATTGCTAGCAGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076671.4
CDS GCA 72 bp CCAAAAAGCCCAAGAAAGCTAGAAACCAGCAGCAAGTaGTGGTTTCCTCGAATATACAAAGGAATGGAGCCA +
Preference number: 6 (lower is better)
Translates to: PKSPRKLETSSK*WFPRIYKGMEP
Trigger: TGGCTCCATTCCTTTGTATATTCGAGGAAACCAGCACTTGCTGCTGGTTTCTAGCTTTCTTGGGCTTTTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076671.4
CDS CCA 72 bp AAAAGCCCAAGAAAGCTAGAAACCAGCAGCAAGTGCTaGTTTCCTCGAATATACAAAGGAATGGAGCCATCG +
Preference number: 6 (lower is better)
Translates to: KSPRKLETSSKC*FPRIYKGMEPS
Trigger: CGATGGCTCCATTCCTTTGTATATTCGAGGAAACCAGCACTTGCTGCTGGTTTCTAGCTTTCTTGGGCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076671.4