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Pregenerated sensors for CLDN34B1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000072100

Ensembl transcript IDs: ENSMUST00000096852.5

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp TTCCCCGCAGGCCACAATTGGCATCCTTTCAAGTTCTTTGAAAATTaGTGTAGACATGTGAAGAATACTCATTATCTTTGCTGGCATTTC +
Preference number: 2 (lower is better)
Translates to: FPAGHNWHPFKFFEN*CRHVKNTHYLCWHF
Trigger: GAAATGCCAGCAAAGATAATGAGTATTCTTCACATGTCTACACAAATTTTCAAAGAACTTGAAAGGATGCCAATTGTGGCCTGCGGGGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096852.5
CDS CCA 90 bp ACTGAGGAAGGCCTGTGGATATGCAGCAAAGTAGCCAGGCCACAGTaGTCAAAGCAAAACCTCCCATTTGGCCATGGCACTTTTTCAACG +
Preference number: 5 (lower is better)
Translates to: TEEGLWICSKVARPQ*SKQNLPFGHGTFST
Trigger: CGTTGAAAAAGTGCCATGGCCAAATGGGAGGTTTTGCTTTGACCACTGTGGCCTGGCTACTTTGCTGCATATCCACAGGCCTTCCTCAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096852.5
CDS GCA 72 bp AGTGCCACACTTGCCACTGAGGAAGGCCTGTGGATATaGAGCAAAGTAGCCAGGCCACAGTGGTCAAAGCAA +
Preference number: 6 (lower is better)
Translates to: SATLATEEGLWI*SKVARPQWSKQ
Trigger: TTGCTTTGACCACTGTGGCCTGGCTACTTTGCTGCATATCCACAGGCCTTCCTCAGTGGCAAGTGTGGCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096852.5
CDS CCA 72 bp GGCCTGTGGATATGCAGCAAAGTAGCCAGGCCACAGTaGTCAAAGCAAAACCTCCCATTTGGCCATGGCACT +
Preference number: 6 (lower is better)
Translates to: GLWICSKVARPQ*SKQNLPFGHGT
Trigger: AGTGCCATGGCCAAATGGGAGGTTTTGCTTTGACCACTGTGGCCTGGCTACTTTGCTGCATATCCACAGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096852.5
CDS CCA 72 bp CTTCATAGTGCCACACTTGCCACTGAGGAAGGCCTGTaGATATGCAGCAAAGTAGCCAGGCCACAGTGGTCA +
Preference number: 6 (lower is better)
Translates to: LHSATLATEEGL*ICSKVARPQWS
Trigger: TGACCACTGTGGCCTGGCTACTTTGCTGCATATCCACAGGCCTTCCTCAGTGGCAAGTGTGGCACTATGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096852.5
CDS CCA 72 bp TGCCAAAGCCATGGCACTTCCCATCTTCCGAGTGTCTaGCTGGAAAGGCAAATTGAAAGATGGTGGGAAGGC +
Preference number: 6 (lower is better)
Translates to: CQSHGTSHLPSV*LERQIERWWEG
Trigger: GCCTTCCCACCATCTTTCAATTTGCCTTTCCAGCCAGACACTCGGAAGATGGGAAGTGCCATGGCTTTGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096852.5
CDS CAA 72 bp AGGCTTGAGGACCACAGGATCTTCATAGTGCCACACTaGCCACTGAGGAAGGCCTGTGGATATGCAGCAAAG +
Preference number: 6 (lower is better)
Translates to: RLEDHRIFIVPH*PLRKACGYAAK
Trigger: CTTTGCTGCATATCCACAGGCCTTCCTCAGTGGCAAGTGTGGCACTATGAAGATCCTGTGGTCCTCAAGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096852.5
CDS CCA 72 bp CTTCCGAGTGTCTGGCTGGAAAGGCAAATTGAAAGATaGTGGGAAGGCAATCCCCCATTTGCTCATGATGGC +
Preference number: 6 (lower is better)
Translates to: LPSVWLERQIER*WEGNPPFAHDG
Trigger: GCCATCATGAGCAAATGGGGGATTGCCTTCCCACCATCTTTCAATTTGCCTTTCCAGCCAGACACTCGGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096852.5
CDS CAA 72 bp CTTCCCATCTTCCGAGTGTCTGGCTGGAAAGGCAAATaGAAAGATGGTGGGAAGGCAATCCCCCATTTGCTC +
Preference number: 6 (lower is better)
Translates to: LPIFRVSGWKGK*KDGGKAIPHLL
Trigger: GAGCAAATGGGGGATTGCCTTCCCACCATCTTTCAATTTGCCTTTCCAGCCAGACACTCGGAAGATGGGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096852.5
CDS CCA 72 bp CCGAGTGTCTGGCTGGAAAGGCAAATTGAAAGATGGTaGGAAGGCAATCCCCCATTTGCTCATGATGGCTAT +
Preference number: 6 (lower is better)
Translates to: PSVWLERQIERW*EGNPPFAHDGY
Trigger: ATAGCCATCATGAGCAAATGGGGGATTGCCTTCCCACCATCTTTCAATTTGCCTTTCCAGCCAGACACTCGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096852.5
CDS CCA 72 bp AAAGCCATGGCACTTCCCATCTTCCGAGTGTCTGGCTaGAAAGGCAAATTGAAAGATGGTGGGAAGGCAATC +
Preference number: 6 (lower is better)
Translates to: KAMALPIFRVSG*KGKLKDGGKAI
Trigger: GATTGCCTTCCCACCATCTTTCAATTTGCCTTTCCAGCCAGACACTCGGAAGATGGGAAGTGCCATGGCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096852.5
CDS CCA 72 bp CATCGTAGTTGTATTGGTAACATACTCTGGTGTTGCTaGAGTTTCTGTCGGTGTGGAAAACGCAGGCTCTCC +
Preference number: 6 (lower is better)
Translates to: HRSCIGNILWCC*SFCRCGKRRLS
Trigger: GGAGAGCCTGCGTTTTCCACACCGACAGAAACTCCAGCAACACCAGAGTATGTTACCAATACAACTACGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096852.5
CDS GCA 72 bp CCAAAAAGCCCAAGAAAGCTAGAAACCAGCAGCAAGTaGTGGTTTCCCCGAATATACAAAGGAATGGAGCCA +
Preference number: 6 (lower is better)
Translates to: PKSPRKLETSSK*WFPRIYKGMEP
Trigger: TGGCTCCATTCCTTTGTATATTCGGGGAAACCAGCACTTGCTGCTGGTTTCTAGCTTTCTTGGGCTTTTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096852.5
CDS CCA 72 bp AAAAGCCCAAGAAAGCTAGAAACCAGCAGCAAGTGCTaGTTTCCCCGAATATACAAAGGAATGGAGCCATCG +
Preference number: 6 (lower is better)
Translates to: KSPRKLETSSKC*FPRIYKGMEPS
Trigger: CGATGGCTCCATTCCTTTGTATATTCGGGGAAACCAGCACTTGCTGCTGGTTTCTAGCTTTCTTGGGCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096852.5
CDS CAA 72 bp GCAATGATGTTCAGTATGCCTGAAAGTCTGAAAGGATaGCAGGTGGCATTCCTCCGTACTCTTCCCATATGC +
Preference number: 6 (lower is better)
Translates to: AMMFSMPESLKG*QVAFLRTLPIC
Trigger: GCATATGGGAAGAGTACGGAGGAATGCCACCTGCAATCCTTTCAGACTTTCAGGCATACTGAACATCATTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096852.5