Pregenerated sensors for CLDN34A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000091863

Ensembl transcript IDs: ENSMUST00000164764.2, ENSMUST00000238455.2

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR CAA 90 bp	GAGGCATTTGGCCATTTTCTGTCACAGGCCATTTGGGCATTGTTGAGTCCTTGGACATCTCAAAAATCCTaGCTGAACCAACATGAAGTT	+
Preference number: 3 (lower is better) Translates to: EAFGHFLSQAIWALLSPWTSQKS*LNQHEV Trigger: AACTTCATGTTGGTTCAGCAAGGATTTTTGAGATGT...CCAAGGACTCAACAATGCCCAAATGGCCTGTGACAGAAAATGGCCAAATGCCTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000238455.2
CDS-3UTR GCA 90 bp	AAAGAGGCATTTGGCCATTTTCTGTCACAGGCCATTTGGGCATTGTTGAGTCCTAACAGCAGCTGCTTTTaGAACCAGCAAGAAAAGGCT	+
Preference number: 4 (lower is better) Translates to: KEAFGHFLSQAIWALLSPNSSCF*NQQEKA Trigger: AGCCTTTTCTTGCTGGTTGCAAAAGCAGCTGCTGTT...AGGACTCAACAATGCCCAAATGGCCTGTGACAGAAAATGGCCAAATGCCTCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000238455.2
CDS-3UTR CCA 90 bp	ATTTGGGCATTGTTGAGTCCTTGGTTTTCAGATAGACATCTCAAAAATCCTTGCGGGCATGTGGAAAGATaGTGGAAAAGCAATCCCCTC	+
Preference number: 4 (lower is better) Translates to: IWALLSPWFSDRHLKNPCGHVER*WKSNPL Trigger: GAGGGGATTGCTTTTCCACCATCTTTCCACATGCCC...GCAAGGATTTTTGAGATGTCTATCTGAAAACCAAGGACTCAACAATGCCCAAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000238455.2
CDS-3UTR TCA 90 bp	GATAATAAAGAGGCATTTGGCCATTTTCTGTCACAGGCCATTTGGGCATTGTTGCAAAGCTACTGCCAATaGTGTTCAGAACTGCTGAAA	+
Preference number: 4 (lower is better) Translates to: DNKEAFGHFLSQAIWALLQSYCQ*CSELLK Trigger: TTTCAGCAGTTCTGAACATCATTGGCAGTAGCTTTG...CAACAATGCCCAAATGGCCTGTGACAGAAAATGGCCAAATGCCTCTTTATTATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238455.2
CDS-3UTR CCA 90 bp	AATGAGACAGAAAAGATAATAAAGAGGCATTTGGCCATTTTCTGTCACAGGCCACATGTGGAAAGATGGTaGAAAAGCAATCCCCTCCTT	+
Preference number: 4 (lower is better) Translates to: NETEKIIKRHLAIFCHRPHVERW*KSNPLL Trigger: AAGGAGGGGATTGCTTTTCCACCATCTTTCCACATG...TGGCCTGTGACAGAAAATGGCCAAATGCCTCTTTATTATCTTTTCTGTCTCATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000238455.2
CDS-3UTR TCA 90 bp	AATGAGACAGAAAAGATAATAAAGAGGCATTTGGCCATTTTCTGTCACAGGCCAGAATATCCAAAGGAATaGAGGTGTCATGGTAGCTGT	+
Preference number: 4 (lower is better) Translates to: NETEKIIKRHLAIFCHRPEYPKE*RCHGSC Trigger: ACAGCTACCATGACACCTTCATTCCTTTGGATATTC...TGGCCTGTGACAGAAAATGGCCAAATGCCTCTTTATTATCTTTTCTGTCTCATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238455.2
CDS-3UTR GCA 90 bp	AATGAGACAGAAAAGATAATAAAGAGGCATTTGGCCATTTTCTGTCACAGGCCAAGCATAAACAGCAGCTaGTTTTGCAACCAGCAAGAA	+
Preference number: 4 (lower is better) Translates to: NETEKIIKRHLAIFCHRPSINSS*FCNQQE Trigger: TTCTTGCTGGTTGCAAAAGCAGCTGCTGTTTATGCT...TGGCCTGTGACAGAAAATGGCCAAATGCCTCTTTATTATCTTTTCTGTCTCATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000238455.2
CDS-3UTR CCA 90 bp	ATTTGGGCATTGTTGAGTCCTTGGTTTTCAGATAGACATCTCAAAAATCCTTGCTACACAAGAACAGGATaGCTGCTAGAAATGCCAGTA	+
Preference number: 4 (lower is better) Translates to: IWALLSPWFSDRHLKNPCYTRTG*LLEMPV Trigger: TACTGGCATTTCTAGCAGCCATCCTGTTCTTGTGTA...GCAAGGATTTTTGAGATGTCTATCTGAAAACCAAGGACTCAACAATGCCCAAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000238455.2
CDS-3UTR TCA 90 bp	ATTTGGGCATTGTTGAGTCCTTGGTTTTCAGATAGACATCTCAAAAATCCTTGCTCCCCTCCTTGTTTATaGTGGAGAAATAATTGCACA	+
Preference number: 4 (lower is better) Translates to: IWALLSPWFSDRHLKNPCSPPCL*WRNNCT Trigger: TGTGCAATTATTTCTCCATCATAAACAAGGAGGGGA...GCAAGGATTTTTGAGATGTCTATCTGAAAACCAAGGACTCAACAATGCCCAAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000238455.2
CDS CCA 90 bp	AGGATAAGAGATCAGAGGTTCCTTTGCATACCACACTCGCCACTGTaGGAGGCCCATGGAGGTGATGCAAATAATCCATCCTATGGTGGA	+
Preference number: 5 (lower is better) Translates to: RIRDQRFLCIPHSPL*EAHGGDANNPSYGG Trigger: TCCACCATAGGATGGATTATTTGCATCACCTCCATGGGCCTCCCACAGTGGCGAGTGTGGTATGCAAAGGAACCTCTGATCTCTTATCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000164764.2 ENSMUST00000238455.2
CDS-3UTR CAA 90 bp	GGCCATTTTCTGTCACAGGCCATTTGGGCATTGTTGAGTCCTTGGTTTTCAGATAAACAGCAGCTGCTTTaGCAACCAGCAAGAAAAGGC	+
Preference number: 5 (lower is better) Translates to: GHFLSQAIWALLSPWFSDKQQLL*QPARKG Trigger: GCCTTTTCTTGCTGGTTGCAAAAGCAGCTGCTGTTT...ATCTGAAAACCAAGGACTCAACAATGCCCAAATGGCCTGTGACAGAAAATGGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000238455.2
CDS TCA 90 bp	AGGGCATGTGGAAAGATGGTGGAAAAGCAATCCCCTCCTTGTTTATaGTGGAGAAATAATTGCACAAGACAGCAAGGAAGACAAAGCTAC	+
Preference number: 5 (lower is better) Translates to: RACGKMVEKQSPPCL*WRNNCTRQQGRQSY Trigger: GTAGCTTTGTCTTCCTTGCTGTCTTGTGCAATTATTTCTCCATCATAAACAAGGAGGGGATTGCTTTTCCACCATCTTTCCACATGCCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000164764.2 ENSMUST00000238455.2
CDS CCA 72 bp	TGCCAGTATCATAGCAATGCCAACCTGCTGAGTATGTaGGTAAAAGGGCATGTGGAAAGATGGTGGAAAAGC	+
Preference number: 6 (lower is better) Translates to: CQYHSNANLLSM*VKGHVERWWKS Trigger: GCTTTTCCACCATCTTTCCACATGCCCTTTTACCCACATACTCAGCAGGTTGGCATTGCTATGATACTGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000164764.2 ENSMUST00000238455.2
CDS TCA 72 bp	TGCACAAGACAGCAAGGAAGACAAAGCTACTGCCAATaGTGTTCAGAACTGCTGAAAGGCCAAAGGCATTGT	+
Preference number: 6 (lower is better) Translates to: CTRQQGRQSYCQ*CSELLKGQRHC Trigger: ACAATGCCTTTGGCCTTTCAGCAGTTCTGAACATCATTGGCAGTAGCTTTGTCTTCCTTGCTGTCTTGTGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000164764.2 ENSMUST00000238455.2
CDS TCA 72 bp	ACCAGCAAGAAAAGGCTGGTAGTCAACATCAGGTGCTaGGAAACACGAATATCCAAAGGAATGAAGGTGTCA	+
Preference number: 6 (lower is better) Translates to: TSKKRLVVNIRC*ETRISKGMKVS Trigger: TGACACCTTCATTCCTTTGGATATTCGTGTTTCTCAGCACCTGATGTTGACTACCAGCCTTTTCTTGCTGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000164764.2 ENSMUST00000238455.2
CDS GCA 72 bp	GTACACATTTCTAAGAGCATAAACAGCAGCTGCTTTTaGAACCAGCAAGAAAAGGCTGGTAGTCAACATCAG	+
Preference number: 6 (lower is better) Translates to: VHISKSINSSCF*NQQEKAGSQHQ Trigger: CTGATGTTGACTACCAGCCTTTTCTTGCTGGTTGCAAAAGCAGCTGCTGTTTATGCTCTTAGAAATGTGTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000164764.2 ENSMUST00000238455.2
CDS TCA 72 bp	GGAAAGATGGTGGAAAAGCAATCCCCTCCTTGTTTATaGTGGAGAAATAATTGCACAAGACAGCAAGGAAGA	+
Preference number: 6 (lower is better) Translates to: GKMVEKQSPPCL*WRNNCTRQQGR Trigger: TCTTCCTTGCTGTCTTGTGCAATTATTTCTCCATCATAAACAAGGAGGGGATTGCTTTTCCACCATCTTTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000164764.2 ENSMUST00000238455.2
CDS TCA 72 bp	GAAGGACTTGTATGTTTAAGGGAAAGGAGTAAGAGATaGAAATCACACCACTACACAAGAACAGGATGGCTG	+
Preference number: 6 (lower is better) Translates to: EGLVCLRERSKR*KSHHYTRTGWL Trigger: CAGCCATCCTGTTCTTGTGTAGTGGTGTGATTTTCATCTCTTACTCCTTTCCCTTAAACATACAAGTCCTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000164764.2 ENSMUST00000238455.2