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Pregenerated sensors for CLDN34A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000091863

Ensembl transcript IDs: ENSMUST00000164764.2, ENSMUST00000238455.2

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CAA 90 bp GAGGCATTTGGCCATTTTCTGTCACAGGCCATTTGGGCATTGTTGAGTCCTTGGACATCTCAAAAATCCTaGCTGAACCAACATGAAGTT +
Preference number: 3 (lower is better)
Translates to: EAFGHFLSQAIWALLSPWTSQKS*LNQHEV
Trigger: AACTTCATGTTGGTTCAGCAAGGATTTTTGAGATGT...CCAAGGACTCAACAATGCCCAAATGGCCTGTGACAGAAAATGGCCAAATGCCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238455.2
CDS-3UTR GCA 90 bp AAAGAGGCATTTGGCCATTTTCTGTCACAGGCCATTTGGGCATTGTTGAGTCCTAACAGCAGCTGCTTTTaGAACCAGCAAGAAAAGGCT +
Preference number: 4 (lower is better)
Translates to: KEAFGHFLSQAIWALLSPNSSCF*NQQEKA
Trigger: AGCCTTTTCTTGCTGGTTGCAAAAGCAGCTGCTGTT...AGGACTCAACAATGCCCAAATGGCCTGTGACAGAAAATGGCCAAATGCCTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000238455.2
CDS-3UTR CCA 90 bp ATTTGGGCATTGTTGAGTCCTTGGTTTTCAGATAGACATCTCAAAAATCCTTGCGGGCATGTGGAAAGATaGTGGAAAAGCAATCCCCTC +
Preference number: 4 (lower is better)
Translates to: IWALLSPWFSDRHLKNPCGHVER*WKSNPL
Trigger: GAGGGGATTGCTTTTCCACCATCTTTCCACATGCCC...GCAAGGATTTTTGAGATGTCTATCTGAAAACCAAGGACTCAACAATGCCCAAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000238455.2
CDS-3UTR TCA 90 bp GATAATAAAGAGGCATTTGGCCATTTTCTGTCACAGGCCATTTGGGCATTGTTGCAAAGCTACTGCCAATaGTGTTCAGAACTGCTGAAA +
Preference number: 4 (lower is better)
Translates to: DNKEAFGHFLSQAIWALLQSYCQ*CSELLK
Trigger: TTTCAGCAGTTCTGAACATCATTGGCAGTAGCTTTG...CAACAATGCCCAAATGGCCTGTGACAGAAAATGGCCAAATGCCTCTTTATTATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238455.2
CDS-3UTR CCA 90 bp AATGAGACAGAAAAGATAATAAAGAGGCATTTGGCCATTTTCTGTCACAGGCCACATGTGGAAAGATGGTaGAAAAGCAATCCCCTCCTT +
Preference number: 4 (lower is better)
Translates to: NETEKIIKRHLAIFCHRPHVERW*KSNPLL
Trigger: AAGGAGGGGATTGCTTTTCCACCATCTTTCCACATG...TGGCCTGTGACAGAAAATGGCCAAATGCCTCTTTATTATCTTTTCTGTCTCATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000238455.2
CDS-3UTR TCA 90 bp AATGAGACAGAAAAGATAATAAAGAGGCATTTGGCCATTTTCTGTCACAGGCCAGAATATCCAAAGGAATaGAGGTGTCATGGTAGCTGT +
Preference number: 4 (lower is better)
Translates to: NETEKIIKRHLAIFCHRPEYPKE*RCHGSC
Trigger: ACAGCTACCATGACACCTTCATTCCTTTGGATATTC...TGGCCTGTGACAGAAAATGGCCAAATGCCTCTTTATTATCTTTTCTGTCTCATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238455.2
CDS-3UTR GCA 90 bp AATGAGACAGAAAAGATAATAAAGAGGCATTTGGCCATTTTCTGTCACAGGCCAAGCATAAACAGCAGCTaGTTTTGCAACCAGCAAGAA +
Preference number: 4 (lower is better)
Translates to: NETEKIIKRHLAIFCHRPSINSS*FCNQQE
Trigger: TTCTTGCTGGTTGCAAAAGCAGCTGCTGTTTATGCT...TGGCCTGTGACAGAAAATGGCCAAATGCCTCTTTATTATCTTTTCTGTCTCATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000238455.2
CDS-3UTR CCA 90 bp ATTTGGGCATTGTTGAGTCCTTGGTTTTCAGATAGACATCTCAAAAATCCTTGCTACACAAGAACAGGATaGCTGCTAGAAATGCCAGTA +
Preference number: 4 (lower is better)
Translates to: IWALLSPWFSDRHLKNPCYTRTG*LLEMPV
Trigger: TACTGGCATTTCTAGCAGCCATCCTGTTCTTGTGTA...GCAAGGATTTTTGAGATGTCTATCTGAAAACCAAGGACTCAACAATGCCCAAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238455.2
CDS-3UTR TCA 90 bp ATTTGGGCATTGTTGAGTCCTTGGTTTTCAGATAGACATCTCAAAAATCCTTGCTCCCCTCCTTGTTTATaGTGGAGAAATAATTGCACA +
Preference number: 4 (lower is better)
Translates to: IWALLSPWFSDRHLKNPCSPPCL*WRNNCT
Trigger: TGTGCAATTATTTCTCCATCATAAACAAGGAGGGGA...GCAAGGATTTTTGAGATGTCTATCTGAAAACCAAGGACTCAACAATGCCCAAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000238455.2
CDS CCA 90 bp AGGATAAGAGATCAGAGGTTCCTTTGCATACCACACTCGCCACTGTaGGAGGCCCATGGAGGTGATGCAAATAATCCATCCTATGGTGGA +
Preference number: 5 (lower is better)
Translates to: RIRDQRFLCIPHSPL*EAHGGDANNPSYGG
Trigger: TCCACCATAGGATGGATTATTTGCATCACCTCCATGGGCCTCCCACAGTGGCGAGTGTGGTATGCAAAGGAACCTCTGATCTCTTATCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164764.2
ENSMUST00000238455.2
CDS-3UTR CAA 90 bp GGCCATTTTCTGTCACAGGCCATTTGGGCATTGTTGAGTCCTTGGTTTTCAGATAAACAGCAGCTGCTTTaGCAACCAGCAAGAAAAGGC +
Preference number: 5 (lower is better)
Translates to: GHFLSQAIWALLSPWFSDKQQLL*QPARKG
Trigger: GCCTTTTCTTGCTGGTTGCAAAAGCAGCTGCTGTTT...ATCTGAAAACCAAGGACTCAACAATGCCCAAATGGCCTGTGACAGAAAATGGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000238455.2
CDS TCA 90 bp AGGGCATGTGGAAAGATGGTGGAAAAGCAATCCCCTCCTTGTTTATaGTGGAGAAATAATTGCACAAGACAGCAAGGAAGACAAAGCTAC +
Preference number: 5 (lower is better)
Translates to: RACGKMVEKQSPPCL*WRNNCTRQQGRQSY
Trigger: GTAGCTTTGTCTTCCTTGCTGTCTTGTGCAATTATTTCTCCATCATAAACAAGGAGGGGATTGCTTTTCCACCATCTTTCCACATGCCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164764.2
ENSMUST00000238455.2
CDS CCA 72 bp TGCCAGTATCATAGCAATGCCAACCTGCTGAGTATGTaGGTAAAAGGGCATGTGGAAAGATGGTGGAAAAGC +
Preference number: 6 (lower is better)
Translates to: CQYHSNANLLSM*VKGHVERWWKS
Trigger: GCTTTTCCACCATCTTTCCACATGCCCTTTTACCCACATACTCAGCAGGTTGGCATTGCTATGATACTGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164764.2
ENSMUST00000238455.2
CDS TCA 72 bp TGCACAAGACAGCAAGGAAGACAAAGCTACTGCCAATaGTGTTCAGAACTGCTGAAAGGCCAAAGGCATTGT +
Preference number: 6 (lower is better)
Translates to: CTRQQGRQSYCQ*CSELLKGQRHC
Trigger: ACAATGCCTTTGGCCTTTCAGCAGTTCTGAACATCATTGGCAGTAGCTTTGTCTTCCTTGCTGTCTTGTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164764.2
ENSMUST00000238455.2
CDS TCA 72 bp ACCAGCAAGAAAAGGCTGGTAGTCAACATCAGGTGCTaGGAAACACGAATATCCAAAGGAATGAAGGTGTCA +
Preference number: 6 (lower is better)
Translates to: TSKKRLVVNIRC*ETRISKGMKVS
Trigger: TGACACCTTCATTCCTTTGGATATTCGTGTTTCTCAGCACCTGATGTTGACTACCAGCCTTTTCTTGCTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164764.2
ENSMUST00000238455.2
CDS GCA 72 bp GTACACATTTCTAAGAGCATAAACAGCAGCTGCTTTTaGAACCAGCAAGAAAAGGCTGGTAGTCAACATCAG +
Preference number: 6 (lower is better)
Translates to: VHISKSINSSCF*NQQEKAGSQHQ
Trigger: CTGATGTTGACTACCAGCCTTTTCTTGCTGGTTGCAAAAGCAGCTGCTGTTTATGCTCTTAGAAATGTGTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164764.2
ENSMUST00000238455.2
CDS TCA 72 bp GGAAAGATGGTGGAAAAGCAATCCCCTCCTTGTTTATaGTGGAGAAATAATTGCACAAGACAGCAAGGAAGA +
Preference number: 6 (lower is better)
Translates to: GKMVEKQSPPCL*WRNNCTRQQGR
Trigger: TCTTCCTTGCTGTCTTGTGCAATTATTTCTCCATCATAAACAAGGAGGGGATTGCTTTTCCACCATCTTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164764.2
ENSMUST00000238455.2
CDS TCA 72 bp GAAGGACTTGTATGTTTAAGGGAAAGGAGTAAGAGATaGAAATCACACCACTACACAAGAACAGGATGGCTG +
Preference number: 6 (lower is better)
Translates to: EGLVCLRERSKR*KSHHYTRTGWL
Trigger: CAGCCATCCTGTTCTTGTGTAGTGGTGTGATTTTCATCTCTTACTCCTTTCCCTTAAACATACAAGTCCTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000164764.2
ENSMUST00000238455.2