RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CLDN3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000070473

Ensembl transcript IDs: ENSMUST00000094245.4

Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGGAAGGTGGGGTGGTCTCAGACGCGAGGCTGCACGCTGGACGGGTaGGGTTCATCGACTGCTGGTAGTGGTGACGGTACGGTCTGCGTG +
Preference number: 1 (lower is better)
Translates to: WKVGWSQTRGCTLDG*GSSTAGSGDGTVCV
Trigger: CACGCAGACCGTACCGTCACCACTACCAGCAGTCGATGAACCCCACCCGTCCAGCGTGCAGCCTCGCGTCTGAGACCACCCCACCTTCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
3UTR CCA 90 bp TCACCATCTGGAAGGTGGGGTGGTCTCAGACGCGAGGCTGCACGCTaGACGGGTGGGGTTCATCGACTGCTGGTAGTGGTGACGGTACGG +
Preference number: 1 (lower is better)
Translates to: SPSGRWGGLRREAAR*TGGVHRLLVVVTVR
Trigger: CCGTACCGTCACCACTACCAGCAGTCGATGAACCCCACCCGTCCAGCGTGCAGCCTCGCGTCTGAGACCACCCCACCTTCCAGATGGTGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
3UTR CCA 90 bp CAGCCTAGCAAGCAGACTGTGTGTCGTCTGTCACCATCTGGAAGGTaGGGTGGTCTCAGACGCGAGGCTGCACGCTGGACGGGTGGGGTT +
Preference number: 1 (lower is better)
Translates to: QPSKQTVCRLSPSGR*GGLRREAARWTGGV
Trigger: AACCCCACCCGTCCAGCGTGCAGCCTCGCGTCTGAGACCACCCCACCTTCCAGATGGTGACAGACGACACACAGTCTGCTTGCTAGGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
3UTR CCA 72 bp GGGTGGTCTCAGACGCGAGGCTGCACGCTGGACGGGTaGGGTTCATCGACTGCTGGTAGTGGTGACGGTACG +
Preference number: 3 (lower is better)
Translates to: GWSQTRGCTLDG*GSSTAGSGDGT
Trigger: CGTACCGTCACCACTACCAGCAGTCGATGAACCCCACCCGTCCAGCGTGCAGCCTCGCGTCTGAGACCACCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
3UTR CCA 72 bp GGAAGGTGGGGTGGTCTCAGACGCGAGGCTGCACGCTaGACGGGTGGGGTTCATCGACTGCTGGTAGTGGTG +
Preference number: 3 (lower is better)
Translates to: GRWGGLRREAAR*TGGVHRLLVVV
Trigger: CACCACTACCAGCAGTCGATGAACCCCACCCGTCCAGCGTGCAGCCTCGCGTCTGAGACCACCCCACCTTCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
3UTR GCA 72 bp ACCATCTGGAAGGTGGGGTGGTCTCAGACGCGAGGCTaGACGCTGGACGGGTGGGGTTCATCGACTGCTGGT +
Preference number: 3 (lower is better)
Translates to: TIWKVGWSQTRG*TLDGWGSSTAG
Trigger: ACCAGCAGTCGATGAACCCCACCCGTCCAGCGTGCAGCCTCGCGTCTGAGACCACCCCACCTTCCAGATGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
3UTR CCA 72 bp GACTGTGTGTCGTCTGTCACCATCTGGAAGGTGGGGTaGTCTCAGACGCGAGGCTGCACGCTGGACGGGTGG +
Preference number: 3 (lower is better)
Translates to: DCVSSVTIWKVG*SQTRGCTLDGW
Trigger: CCACCCGTCCAGCGTGCAGCCTCGCGTCTGAGACCACCCCACCTTCCAGATGGTGACAGACGACACACAGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
3UTR CCA 72 bp TTGCCTGTCTCTGCCCACTGTGAGCTTCTGCGGGGCTaGCAAGTAGCTGCAGTGGCCACCCCAGCCCAGTTC +
Preference number: 3 (lower is better)
Translates to: LPVSAHCELLRG*QVAAVATPAQF
Trigger: GAACTGGGCTGGGGTGGCCACTGCAGCTACTTGCCAGCCCCGCAGAAGCTCACAGTGGGCAGAGACAGGCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
3UTR CCA 72 bp AAGCAGACTGTGTGTCGTCTGTCACCATCTGGAAGGTaGGGTGGTCTCAGACGCGAGGCTGCACGCTGGACG +
Preference number: 3 (lower is better)
Translates to: KQTVCRLSPSGR*GGLRREAARWT
Trigger: CGTCCAGCGTGCAGCCTCGCGTCTGAGACCACCCCACCTTCCAGATGGTGACAGACGACACACAGTCTGCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
3UTR CCA 72 bp ATTCGGCTTGGACAGTTCCTAGGCCCGGTAGTCAGGTaGCAGCCGGAGAAGGGGAGATGCCAGCCTGTCTGT +
Preference number: 3 (lower is better)
Translates to: IRLGQFLGPVVR*QPEKGRCQPVC
Trigger: ACAGACAGGCTGGCATCTCCCCTTCTCCGGCTGCCACCTGACTACCGGGCCTAGGAACTGTCCAAGCCGAAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
3UTR GCA 72 bp TTTATTGAAAAATATGAAATGGCCCGTTTCATGGTTTaGCTGTCTCTGCCCACTGTGAGCTTCTGCGGGGCT +
Preference number: 3 (lower is better)
Translates to: FIEKYEMARFMV*LSLPTVSFCGA
Trigger: AGCCCCGCAGAAGCTCACAGTGGGCAGAGACAGGCAAACCATGAAACGGGCCATTTCATATTTTTCAATAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
CDS-3UTR GCA 90 bp ACCATCTGGAAGGTGGGGTGGTCTCAGACGCGAGGCTGCACGCTGGACGGGTGGCGCAGCACACGATGGTaGACAGCCAGCCCAGCACGG +
Preference number: 4 (lower is better)
Translates to: TIWKVGWSQTRGCTLDGWRSTRW*TASPAR
Trigger: CCGTGCTGGGCTGGCTGTGCACCATCGTGTGCTGCG...CCACCCGTCCAGCGTGCAGCCTCGCGTCTGAGACCACCCCACCTTCCAGATGGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
CDS-3UTR CCA 90 bp ATCTGGAAGGTGGGGTGGTCTCAGACGCGAGGCTGCACGCTGGACGGGTGGGGTGGGCGCAGCACACGATaGTGCACAGCCAGCCCAGCA +
Preference number: 4 (lower is better)
Translates to: IWKVGWSQTRGCTLDGWGGRSTR*CTASPA
Trigger: TGCTGGGCTGGCTGTGCACCATCGTGTGCTGCGCCC...ACCCCACCCGTCCAGCGTGCAGCCTCGCGTCTGAGACCACCCCACCTTCCAGAT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
CDS-3UTR TCA 90 bp GAGCTTCTGCGGGGCTGGCAAGTAGCTGCAGTGGCCACCCCAGCCCAGTTCTTGCCAGCGACGTGCCGGTaGTCTCCAGGCCCATGGACA +
Preference number: 4 (lower is better)
Translates to: ELLRGWQVAAVATPAQFLPATCR*SPGPWT
Trigger: TGTCCATGGGCCTGGAGATCACCGGCACGTCGCTGG...CAAGAACTGGGCTGGGGTGGCCACTGCAGCTACTTGCCAGCCCCGCAGAAGCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
CDS-3UTR CCA 90 bp GAGCTTCTGCGGGGCTGGCAAGTAGCTGCAGTGGCCACCCCAGCCCAGTTCTTGACGCAGTTGGTACACTaGGCGCCCACGAGCGCCACG +
Preference number: 4 (lower is better)
Translates to: ELLRGWQVAAVATPAQFLTQLVH*APTSAT
Trigger: CGTGGCGCTCGTGGGCGCCCAGTGTACCAACTGCGT...CAAGAACTGGGCTGGGGTGGCCACTGCAGCTACTTGCCAGCCCCGCAGAAGCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
CDS-3UTR CCA 90 bp CAGCCCAGTTCTTGGGAAGGGCGAGGTTTCTTTGTCCATTCGGCTTGGACAGTTCCCATCTCCCGCTTCTaGGCCTCGGGCACCAACGGG +
Preference number: 4 (lower is better)
Translates to: QPSSWEGRGFFVHSAWTVPISRF*ASGTNG
Trigger: CCCGTTGGTGCCCGAGGCCCAGAAGCGGGAGATGGG...AACTGTCCAAGCCGAATGGACAAAGAAACCTCGCCCTTCCCAAGAACTGGGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
CDS-3UTR CCA 90 bp AGTGGCCACCCCAGCCCAGTTCTTGGGAAGGGCGAGGTTTCTTTGTCCATTCGGCGTCTTGTACGCAGTTaGTACACTGGGCGCCCACGA +
Preference number: 4 (lower is better)
Translates to: SGHPSPVLGKGEVSLSIRRLVRS*YTGRPR
Trigger: TCGTGGGCGCCCAGTGTACCAACTGCGTACAAGACG...CCGAATGGACAAAGAAACCTCGCCCTTCCCAAGAACTGGGCTGGGGTGGCCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
CDS-3UTR CCA 90 bp ATCTGGAAGGTGGGGTGGTCTCAGACGCGAGGCTGCACGCTGGACGGGTGGGGTCAGAATAGAGGATCTTaGTGGGTGCATACTTGTCGC +
Preference number: 4 (lower is better)
Translates to: IWKVGWSQTRGCTLDGWGQNRGS*WVHTCR
Trigger: GCGACAAGTATGCACCCACCAAGATCCTCTATTCTG...ACCCCACCCGTCCAGCGTGCAGCCTCGCGTCTGAGACCACCCCACCTTCCAGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
3UTR CAA 72 bp CACCCCAGCCCAGTTCTTGGGAAGGGCGAGGTTTCTTaGTCCATTCGGCTTGGACAGTTCCTAGGCCCGGTA +
Preference number: 4 (lower is better)
Translates to: HPSPVLGKGEVS*SIRLGQFLGPV
Trigger: TACCGGGCCTAGGAACTGTCCAAGCCGAATGGACAAAGAAACCTCGCCCTTCCCAAGAACTGGGCTGGGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
CDS GCA 90 bp GCCAGGGCCGGTGGATCGCGGCGCAGAATAGAGGATCTTGGTGGGTaGATACTTGTCGCGCGGTGGGCAGGAGCAACACAGCAAGGCGCC +
Preference number: 5 (lower is better)
Translates to: ARAGGSRRRIEDLGG*ILVARWAGATQQGA
Trigger: GGCGCCTTGCTGTGTTGCTCCTGCCCACCGCGCGACAAGTATGCACCCACCAAGATCCTCTATTCTGCGCCGCGATCCACCGGCCCTGGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
CDS CCA 90 bp CGGTGCCAGGGCCGGTGGATCGCGGCGCAGAATAGAGGATCTTGGTaGGTGCATACTTGTCGCGCGGTGGGCAGGAGCAACACAGCAAGG +
Preference number: 5 (lower is better)
Translates to: RCQGRWIAAQNRGSW*VHTCRAVGRSNTAR
Trigger: CCTTGCTGTGTTGCTCCTGCCCACCGCGCGACAAGTATGCACCCACCAAGATCCTCTATTCTGCGCCGCGATCCACCGGCCCTGGCACCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
CDS CCA 90 bp TACCGGTGCCAGGGCCGGTGGATCGCGGCGCAGAATAGAGGATCTTaGTGGGTGCATACTTGTCGCGCGGTGGGCAGGAGCAACACAGCA +
Preference number: 5 (lower is better)
Translates to: YRCQGRWIAAQNRGS*WVHTCRAVGRSNTA
Trigger: TGCTGTGTTGCTCCTGCCCACCGCGCGACAAGTATGCACCCACCAAGATCCTCTATTCTGCGCCGCGATCCACCGGCCCTGGCACCGGTA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
CDS CCA 90 bp AGTCCTTGCGGTCGTAGGCGGTGCCGGTACCGGTGCCAGGGCCGGTaGATCGCGGCGCAGAATAGAGGATCTTGGTGGGTGCATACTTGT +
Preference number: 5 (lower is better)
Translates to: SPCGRRRCRYRCQGR*IAAQNRGSWWVHTC
Trigger: ACAAGTATGCACCCACCAAGATCCTCTATTCTGCGCCGCGATCCACCGGCCCTGGCACCGGTACCGGCACCGCCTACGACCGCAAGGACT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
CDS-3UTR CAA 90 bp TGGACAGTTCCTAGGCCCGGTAGTCAGGTGGCAGCCGGAGAAGGGGAGATGCCATCGTCTTGTACGCAGTaGGTACACTGGGCGCCCACG +
Preference number: 5 (lower is better)
Translates to: WTVPRPGSQVAAGEGEMPSSCTQ*VHWAPT
Trigger: CGTGGGCGCCCAGTGTACCAACTGCGTACAAGACGA...TGGCATCTCCCCTTCTCCGGCTGCCACCTGACTACCGGGCCTAGGAACTGTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
CDS-3UTR CAA 90 bp GCTGCAGTGGCCACCCCAGCCCAGTTCTTGGGAAGGGCGAGGTTTCTTTGTCCACTTGGCCGTCTCGTCTaGTACGCAGTTGGTACACTG +
Preference number: 5 (lower is better)
Translates to: AAVATPAQFLGRARFLCPLGRLV*YAVGTL
Trigger: CAGTGTACCAACTGCGTACAAGACGAGACGGCCAAG...TGGACAAAGAAACCTCGCCCTTCCCAAGAACTGGGCTGGGGTGGCCACTGCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
CDS-3UTR CAA 90 bp ACTTTTATTGAAAAATATGAAATGGCCCGTTTCATGGTTTGCCTGTCTCTGCCCATGGTGATCTTGGCCTaGGCCGTCTCGTCTTGTACG +
Preference number: 5 (lower is better)
Translates to: TFIEKYEMARFMVCLSLPMVILA*AVSSCT
Trigger: CGTACAAGACGAGACGGCCAAGGCCAAGATCACCAT...GGGCAGAGACAGGCAAACCATGAAACGGGCCATTTCATATTTTTCAATAAAAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
CDS-3UTR CAA 90 bp AAGACTTTTATTGAAAAATATGAAATGGCCCGTTTCATGGTTTGCCTGTCTCTGGCCACGATGGTGATCTaGGCCTTGGCCGTCTCGTCT +
Preference number: 5 (lower is better)
Translates to: KTFIEKYEMARFMVCLSLATMVI*ALAVSS
Trigger: AGACGAGACGGCCAAGGCCAAGATCACCATCGTGGC...CAGAGACAGGCAAACCATGAAACGGGCCATTTCATATTTTTCAATAAAAGTCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
CDS GCA 72 bp CGTAGTCCTTGCGGTCGTAGGCGGTGCCGGTACCGGTaGCAGGGCCGGTGGATCGCGGCGCAGAATAGAGGA +
Preference number: 6 (lower is better)
Translates to: RSPCGRRRCRYR*QGRWIAAQNRG
Trigger: TCCTCTATTCTGCGCCGCGATCCACCGGCCCTGGCACCGGTACCGGCACCGCCTACGACCGCAAGGACTACG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
CDS CCA 72 bp GCCTTGGCCGTCTCGTCTTGTACGCAGTTGGTACACTaGGCGCCCACGAGCGCCACGAGGAGCCCGAAGGCG +
Preference number: 6 (lower is better)
Translates to: ALAVSSCTQLVH*APTSATRSPKA
Trigger: CGCCTTCGGGCTCCTCGTGGCGCTCGTGGGCGCCCAGTGTACCAACTGCGTACAAGACGAGACGGCCAAGGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4
CDS CCA 72 bp CAGGGCCGGTGGATCGCGGCGCAGAATAGAGGATCTTaGTGGGTGCATACTTGTCGCGCGGTGGGCAGGAGC +
Preference number: 6 (lower is better)
Translates to: QGRWIAAQNRGS*WVHTCRAVGRS
Trigger: GCTCCTGCCCACCGCGCGACAAGTATGCACCCACCAAGATCCTCTATTCTGCGCCGCGATCCACCGGCCCTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094245.4