Pregenerated sensors for CLDN23 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055976Ensembl transcript IDs: ENSMUST00000060128.7, ENSMUST00000210370.2
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGAAGGCTTGCCCTCCAGTTAGAGGAAGGCGACCAGGGTTCTAGTTaGAGATGTACTGGCAGAAGTTCAAGTCACCCTCAGACTCCAGGC | + |
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Preference number: 1 (lower is better) Translates to: GRLALQLEEGDQGSS*RCTGRSSSHPQTPG Trigger: GCCTGGAGTCTGAGGGTGACTTGAACTTCTGCCAGTACATCTGCAACTAGAACCCTGGTCGCCTTCCTCTAACTGGAGGGCAAGCCTTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| 3UTR CAA 90 bp | TGTTCAGGGCGAGGTATCTCGGGAACAGGACAGTGTAGCATCGCCTaGGCTTTTGGAAGACAAGCTCAACCTCCTACACAGAAACAAGTG | + |
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Preference number: 2 (lower is better) Translates to: CSGRGISGTGQCSIA*AFGRQAQPPTQKQV Trigger: CACTTGTTTCTGTGTAGGAGGTTGAGCTTGTCTTCCAAAAGCCAAGGCGATGCTACACTGTCCTGTTCCCGAGATACCTCGCCCTGAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| 3UTR CCA 72 bp | GAGGTATCTCGGGAACAGGACAGTGTAGCATCGCCTTaGCTTTTGGAAGACAAGCTCAACCTCCTACACAGA | + |
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Preference number: 3 (lower is better) Translates to: EVSREQDSVASP*LLEDKLNLLHR Trigger: TCTGTGTAGGAGGTTGAGCTTGTCTTCCAAAAGCCAAGGCGATGCTACACTGTCCTGTTCCCGAGATACCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| 3UTR GCA 72 bp | ACAGTATGCAAAGAAAACACTACGCACTCTTGTCACTaGATAAGAAGACCTGGTCCCTCTGGAGAGAAAAGT | + |
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Preference number: 3 (lower is better) Translates to: TVCKENTTHSCH*IRRPGPSGEKS Trigger: ACTTTTCTCTCCAGAGGGACCAGGTCTTCTTATGCAGTGACAAGAGTGCGTAGTGTTTTCTTTGCATACTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS-3UTR CCA 90 bp | TTTGGCCCTAGAAAAGGAAGGCTTGCCCTCCAGTTAGAGGAAGGCGACCAGGGTCAGCACCACGTCCACTaGCTGGTCCAGAAAGCCCTT | + |
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Preference number: 4 (lower is better) Translates to: FGPRKGRLALQLEEGDQGQHHVH*LVQKAL Trigger: AAGGGCTTTCTGGACCAGCCAGTGGACGTGGTGCTG...ACCCTGGTCGCCTTCCTCTAACTGGAGGGCAAGCCTTCCTTTTCTAGGGCCAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS-3UTR GCA 90 bp | TGCTACTGCGATGAACAGTATGCAAAGAAAACACTACGCACTCTTGTCACTGCAAGTCCCCGGGCCACCTaGACAGGCTGGGTCTGGAAG | + |
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Preference number: 4 (lower is better) Translates to: CYCDEQYAKKTLRTLVTASPRAT*TGWVWK Trigger: CTTCCAGACCCAGCCTGTGCAGGTGGCCCGGGGACT...TGCAGTGACAAGAGTGCGTAGTGTTTTCTTTGCATACTGTTCATCGCAGTAGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS-3UTR GCA 90 bp | AGTATGCAAAGAAAACACTACGCACTCTTGTCACTGCATAAGAAGACCTGGTCCGGTGTCCCTGTGCTCTaGGGTGGGAGGAGGCCGATG | + |
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Preference number: 4 (lower is better) Translates to: SMQRKHYALLSLHKKTWSGVPVL*GGRRPM Trigger: CATCGGCCTCCTCCCACCGCAGAGCACAGGGACACC...GGACCAGGTCTTCTTATGCAGTGACAAGAGTGCGTAGTGTTTTCTTTGCATACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| 3UTR CAA 72 bp | CGAGGTATCTCGGGAACAGGACAGTGTAGCATCGCCTaGGCTTTTGGAAGACAAGCTCAACCTCCTACACAG | + |
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Preference number: 4 (lower is better) Translates to: RGISGTGQCSIA*AFGRQAQPPTQ Trigger: CTGTGTAGGAGGTTGAGCTTGTCTTCCAAAAGCCAAGGCGATGCTACACTGTCCTGTTCCCGAGATACCTCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS-3UTR TCA 90 bp | AACAGTTCATTTTGTACAAAATATATCTCTGTTCAGGGCGAGGTATCTCGGGAACCACGTAGACGGTGCTaGTGCTGCTGCGGCGCGGGC | + |
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Preference number: 4 (lower is better) Translates to: NSSFCTKYISVQGEVSREPRRRC*CCCGAG Trigger: GCCCGCGCCGCAGCAGCATCAGCACCGTCTACGTGG...TTCCCGAGATACCTCGCCCTGAACAGAGATATATTTTGTACAAAATGAACTGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS-3UTR CCA 90 bp | TCATTTTGTACAAAATATATCTCTGTTCAGGGCGAGGTATCTCGGGAACAGGACTTCCACTCGTCGGGCTaGCCGCACTCGCGTTCGCGA | + |
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Preference number: 4 (lower is better) Translates to: SFCTKYISVQGEVSREQDFHSSG*PHSRSR Trigger: TCGCGAACGCGAGTGCGGCCAGCCCGACGAGTGGAA...GTCCTGTTCCCGAGATACCTCGCCCTGAACAGAGATATATTTTGTACAAAATGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS-3UTR TCA 90 bp | AGGCAACTTAACAGTTCATTTTGTACAAAATATATCTCTGTTCAGGGCGAGGTAGCAACCCGCAGGGCGTaGGCACCATGCCCAGCGTCA | + |
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Preference number: 4 (lower is better) Translates to: RQLNSSFCTKYISVQGEVATRRA*APCPAS Trigger: TGACGCTGGGCATGGTGCTCACGCCCTGCGGGTTGC...TACCTCGCCCTGAACAGAGATATATTTTGTACAAAATGAACTGTTAAGTTGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS-3UTR GCA 90 bp | TGCAATTTTGTTGCTACTGCGATGAACAGTATGCAAAGAAAACACTACGCACTCGGCAGGGCCGAGTGCTaGGAGAGGAGGAACCACCTT | + |
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Preference number: 4 (lower is better) Translates to: CNFVATAMNSMQRKHYALGRAEC*ERRNHL Trigger: AAGGTGGTTCCTCCTCTCGCAGCACTCGGCCCTGCC...GAGTGCGTAGTGTTTTCTTTGCATACTGTTCATCGCAGTAGCAACAAAATTGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS-3UTR GCA 90 bp | AGTATGCAAAGAAAACACTACGCACTCTTGTCACTGCATAAGAAGACCTGGTCCACTCGCGTTCGCGACTaGTCTGCTCGCGACATATGT | + |
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Preference number: 4 (lower is better) Translates to: SMQRKHYALLSLHKKTWSTRVRD*SARDIC Trigger: ACATATGTCGCGAGCAGAGCAGTCGCGAACGCGAGT...GGACCAGGTCTTCTTATGCAGTGACAAGAGTGCGTAGTGTTTTCTTTGCATACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS-3UTR CCA 90 bp | TGCAATTTTGTTGCTACTGCGATGAACAGTATGCAAAGAAAACACTACGCACTCACCACGTCCACTGGCTaGTCCAGAAAGCCCTTCACC | + |
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Preference number: 4 (lower is better) Translates to: CNFVATAMNSMQRKHYALTTSTG*SRKPFT Trigger: GGTGAAGGGCTTTCTGGACCAGCCAGTGGACGTGGT...GAGTGCGTAGTGTTTTCTTTGCATACTGTTCATCGCAGTAGCAACAAAATTGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS-3UTR CCA 90 bp | AGTATGCAAAGAAAACACTACGCACTCTTGTCACTGCATAAGAAGACCTGGTCCGGATCTGACAAGAAGTaGTTATACCAGGAGACCGGG | + |
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Preference number: 4 (lower is better) Translates to: SMQRKHYALLSLHKKTWSGSDKK*LYQETG Trigger: CCCGGTCTCCTGGTATAACCACTTCTTGTCAGATCC...GGACCAGGTCTTCTTATGCAGTGACAAGAGTGCGTAGTGTTTTCTTTGCATACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| 3UTR CAA 72 bp | GCGATGAACAGTATGCAAAGAAAACACTACGCACTCTaGTCACTGCATAAGAAGACCTGGTCCCTCTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: AMNSMQRKHYAL*SLHKKTWSLWR Trigger: TCTCCAGAGGGACCAGGTCTTCTTATGCAGTGACAAGAGTGCGTAGTGTTTTCTTTGCATACTGTTCATCGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS-3UTR CCA 90 bp | AGTATGCAAAGAAAACACTACGCACTCTTGTCACTGCATAAGAAGACCTGGTCCAACCACCTTGGGAGGTaGCTGTCTTCTTTTCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: SMQRKHYALLSLHKKTWSNHLGR*LSSFLL Trigger: GAGAAGAAAAGAAGACAGCCACCTCCCAAGGTGGTT...GGACCAGGTCTTCTTATGCAGTGACAAGAGTGCGTAGTGTTTTCTTTGCATACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS-3UTR TCA 90 bp | AGGCAACTTAACAGTTCATTTTGTACAAAATATATCTCTGTTCAGGGCGAGGTATCGGGAATCCAACCTTaGGCTTGCTGGTGTCCCTGT | + |
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Preference number: 4 (lower is better) Translates to: RQLNSSFCTKYISVQGEVSGIQP*ACWCPC Trigger: ACAGGGACACCAGCAAGCTCAAGGTTGGATTCCCGA...TACCTCGCCCTGAACAGAGATATATTTTGTACAAAATGAACTGTTAAGTTGCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS-3UTR CCA 90 bp | AACAGTTCATTTTGTACAAAATATATCTCTGTTCAGGGCGAGGTATCTCGGGAAGAGGAGGAACCACCTTaGGAGGTGGCTGTCTTCTTT | + |
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Preference number: 4 (lower is better) Translates to: NSSFCTKYISVQGEVSREEEEPP*EVAVFF Trigger: AAAGAAGACAGCCACCTCCCAAGGTGGTTCCTCCTC...TTCCCGAGATACCTCGCCCTGAACAGAGATATATTTTGTACAAAATGAACTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS-3UTR CCA 90 bp | GGCAACTTAACAGTTCATTTTGTACAAAATATATCTCTGTTCAGGGCGAGGTATAACCTCCTTGGGAGGTaGCTGTCTTCTTTTCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: GNLTVHFVQNISLFRARYNLLGR*LSSFLL Trigger: GAGAAGAAAAGAAGACAGCCACCTCCCAAGGAGGTT...ATACCTCGCCCTGAACAGAGATATATTTTGTACAAAATGAACTGTTAAGTTGCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000210370.2 |
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| CDS GCA 90 bp | CGGCCAGTCCACGTAGACGGTGCTGATGCTGCTGCGGCGCGGGCCTaGTGGGGGCGCCTTGCGACAGCGGCGACAACGCTCTTCACACCA | + |
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Preference number: 5 (lower is better) Translates to: RPVHVDGADAAAARA*WGRLATAATTLFTP Trigger: TGGTGTGAAGAGCGTTGTCGCCGCTGTCGCAAGGCGCCCCCAGCAGGCCCGCGCCGCAGCAGCATCAGCACCGTCTACGTGGACTGGCCG 70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS CCA 90 bp | CCAGTCCACGTAGACGGTGCTGATGCTGCTGCGGCGCGGGCCTGCTaGGGGCGCCTTGCGACAGCGGCGACAACGCTCTTCACACCAGGG | + |
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Preference number: 5 (lower is better) Translates to: PVHVDGADAAAARAC*GRLATAATTLFTPG Trigger: CCCTGGTGTGAAGAGCGTTGTCGCCGCTGTCGCAAGGCGCCCCCAGCAGGCCCGCGCCGCAGCAGCATCAGCACCGTCTACGTGGACTGG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS TCA 90 bp | CCTTGCGACAGCGGCGACAACGCTCTTCACACCAGGGCGCAAAGCTaGGCGCCAGAGAGAAGCCGCCCAGAAGCAGCAGGCAGCTGCCTA | + |
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Preference number: 5 (lower is better) Translates to: PCDSGDNALHTRAQS*APERSRPEAAGSCL Trigger: TAGGCAGCTGCCTGCTGCTTCTGGGCGGCTTCTCTCTGGCGCTCAGCTTTGCGCCCTGGTGTGAAGAGCGTTGTCGCCGCTGTCGCAAGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS CCA 90 bp | ACCGGCGAGCTCGGGGCGGCCAGGACGTCGGGATCTGACAAGAAGTaGTTATACCAGGAGACCGGGATGAGGCTGAAGAGGCCAGCGACG | + |
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Preference number: 5 (lower is better) Translates to: TGELGAARTSGSDKK*LYQETGMRLKRPAT Trigger: CGTCGCTGGCCTCTTCAGCCTCATCCCGGTCTCCTGGTATAACCACTTCTTGTCAGATCCCGACGTCCTGGCCGCCCCGAGCTCGCCGGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS TCA 90 bp | CTGCACCGTGACCGGCGAGCTCGGGGCGGCCAGGACGTCGGGATCTaGCAAGAAGTGGTTATACCAGGAGACCGGGATGAGGCTGAAGAG | + |
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Preference number: 5 (lower is better) Translates to: LHRDRRARGGQDVGI*QEVVIPGDRDEAEE Trigger: CTCTTCAGCCTCATCCCGGTCTCCTGGTATAACCACTTCTTGTCAGATCCCGACGTCCTGGCCGCCCCGAGCTCGCCGGTCACGGTGCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS GCA 90 bp | GGAAGTAGTTCCACTCGTCGGGCTGGCCGCACTCGCGTTCGCGACTaGTCTGCTCGCGACATATGTCCCACAGCCCCTGGTACAGCACCA | + |
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Preference number: 5 (lower is better) Translates to: GSSSTRRAGRTRVRD*SARDICPTAPGTAP Trigger: TGGTGCTGTACCAGGGGCTGTGGGACATATGTCGCGAGCAGAGCAGTCGCGAACGCGAGTGCGGCCAGCCCGACGAGTGGAACTACTTCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS CCA 90 bp | CCGATGCTGTCCGTCGCTGTAGTACTTGATGGCAGGTGTGAGCGCTaGTTCCGGCCAGTCCACGTAGACGGTGCTGATGCTGCTGCGGCG | + |
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Preference number: 5 (lower is better) Translates to: PMLSVAVVLDGRCER*FRPVHVDGADAAAA Trigger: CGCCGCAGCAGCATCAGCACCGTCTACGTGGACTGGCCGGAACCAGCGCTCACACCTGCCATCAAGTACTACAGCGACGGACAGCATCGG 63% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS TCA 90 bp | TGGTGTAGGACTTGGGTGGCGGTCGTGGCATCGGGAATCCAACCTTaGGCTTGCTGGTGTCCCTGTGCTCTGCGGTGGGAGGAGGCCGAT | + |
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Preference number: 5 (lower is better) Translates to: WCRTWVAVVASGIQP*ACWCPCALRWEEAD Trigger: ATCGGCCTCCTCCCACCGCAGAGCACAGGGACACCAGCAAGCTCAAGGTTGGATTCCCGATGCCACGACCGCCACCCAAGTCCTACACCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS CCA 90 bp | CTCAAGCACATCCATCGGGTTGGTGTAGGACTTGGGTGGCGGTCGTaGCATCGGGAATCCAACCTTGAGCTTGCTGGTGTCCCTGTGCTC | + |
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Preference number: 5 (lower is better) Translates to: LKHIHRVGVGLGWRS*HRESNLELAGVPVL Trigger: GAGCACAGGGACACCAGCAAGCTCAAGGTTGGATTCCCGATGCCACGACCGCCACCCAAGTCCTACACCAACCCGATGGATGTGCTTGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS GCA 90 bp | ACAGGTCGGAGTCACAGGGCAGCGAATTTTGGCAGGGCCGAGTGCTaGGAGAGGAGGAACCACCTTGGGAGGTGGCTGTCTTCTTTTCTT | + |
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Preference number: 5 (lower is better) Translates to: TGRSHRAANFGRAEC*ERRNHLGRWLSSFL Trigger: AAGAAAAGAAGACAGCCACCTCCCAAGGTGGTTCCTCCTCTCGCAGCACTCGGCCCTGCCAAAATTCGCTGCCCTGTGACTCCGACCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS CCA 90 bp | TTCTTCTCCCTCAAGCACATCCATCGGGTTGGTGTAGGACTTGGGTaGCGGTCGTGGCATCGGGAATCCAACCTTGAGCTTGCTGGTGTC | + |
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Preference number: 5 (lower is better) Translates to: FFSLKHIHRVGVGLG*RSWHRESNLELAGV Trigger: GACACCAGCAAGCTCAAGGTTGGATTCCCGATGCCACGACCGCCACCCAAGTCCTACACCAACCCGATGGATGTGCTTGAGGGAGAAGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS CCA 90 bp | AGGTGGCTGTCTTCTTTTCTTCTCCCTCAAGCACATCCATCGGGTTaGTGTAGGACTTGGGTGGCGGTCGTGGCATCGGGAATCCAACCT | + |
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Preference number: 5 (lower is better) Translates to: RWLSSFLLPQAHPSG*CRTWVAVVASGIQP Trigger: AGGTTGGATTCCCGATGCCACGACCGCCACCCAAGTCCTACACCAACCCGATGGATGTGCTTGAGGGAGAAGAAAAGAAGACAGCCACCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS CCA 90 bp | AGCGAATTTTGGCAGGGCCGAGTGCTGCGAGAGGAGGAACCACCTTaGGAGGTGGCTGTCTTCTTTTCTTCTCCCTCAAGCACATCCATC | + |
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Preference number: 5 (lower is better) Translates to: SEFWQGRVLREEEPP*EVAVFFSSPSSTSI Trigger: GATGGATGTGCTTGAGGGAGAAGAAAAGAAGACAGCCACCTCCCAAGGTGGTTCCTCCTCTCGCAGCACTCGGCCCTGCCAAAATTCGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS-3UTR CAA 90 bp | TTAACAGTTCATTTTGTACAAAATATATCTCTGTTCAGGGCGAGGTATCTCGGGGTAGTGGGGCTCATCTaGCCAACAGCGCACACCGAG | + |
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Preference number: 5 (lower is better) Translates to: LTVHFVQNISLFRARYLGVVGLI*PTAHTE Trigger: CTCGGTGTGCGCTGTTGGCAAGATGAGCCCCACTAC...CCCGAGATACCTCGCCCTGAACAGAGATATATTTTGTACAAAATGAACTGTTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS-3UTR CAA 90 bp | CAATTTTGTTGCTACTGCGATGAACAGTATGCAAAGAAAACACTACGCACTCTTAATCCAACCTTGAGCTaGCTGGTGTCCCTGTGCTCT | + |
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Preference number: 5 (lower is better) Translates to: QFCCYCDEQYAKKTLRTLNPTLS*LVSLCS Trigger: AGAGCACAGGGACACCAGCAAGCTCAAGGTTGGATT...AAGAGTGCGTAGTGTTTTCTTTGCATACTGTTCATCGCAGTAGCAACAAAATTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS-3UTR CAA 90 bp | GGCAACTTAACAGTTCATTTTGTACAAAATATATCTCTGTTCAGGGCGAGGTATAGAGGAGGAACCACCTaGGGAGGTGGCTGTCTTCTT | + |
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Preference number: 5 (lower is better) Translates to: GNLTVHFVQNISLFRARYRGGTT*GGGCLL Trigger: AAGAAGACAGCCACCTCCCAAGGTGGTTCCTCCTCT...ATACCTCGCCCTGAACAGAGATATATTTTGTACAAAATGAACTGTTAAGTTGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS CCA 72 bp | GTAGACGGTGCTGATGCTGCTGCGGCGCGGGCCTGCTaGGGGCGCCTTGCGACAGCGGCGACAACGCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: VDGADAAAARAC*GRLATAATTLF Trigger: GAAGAGCGTTGTCGCCGCTGTCGCAAGGCGCCCCCAGCAGGCCCGCGCCGCAGCAGCATCAGCACCGTCTAC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS GCA 72 bp | TCGTCGGGCTGGCCGCACTCGCGTTCGCGACTGCTCTaGTCGCGACATATGTCCCACAGCCCCTGGTACAGC | + |
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Preference number: 6 (lower is better) Translates to: SSGWPHSRSRLL*SRHMSHSPWYS Trigger: GCTGTACCAGGGGCTGTGGGACATATGTCGCGAGCAGAGCAGTCGCGAACGCGAGTGCGGCCAGCCCGACGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS GCA 72 bp | TCCACTCGTCGGGCTGGCCGCACTCGCGTTCGCGACTaGTCTGCTCGCGACATATGTCCCACAGCCCCTGGT | + |
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Preference number: 6 (lower is better) Translates to: STRRAGRTRVRD*SARDICPTAPG Trigger: ACCAGGGGCTGTGGGACATATGTCGCGAGCAGAGCAGTCGCGAACGCGAGTGCGGCCAGCCCGACGAGTGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS TCA 72 bp | AGCGGCGACAACGCTCTTCACACCAGGGCGCAAAGCTaGGCGCCAGAGAGAAGCCGCCCAGAAGCAGCAGGC | + |
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Preference number: 6 (lower is better) Translates to: SGDNALHTRAQS*APERSRPEAAG Trigger: GCCTGCTGCTTCTGGGCGGCTTCTCTCTGGCGCTCAGCTTTGCGCCCTGGTGTGAAGAGCGTTGTCGCCGCT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS TCA 72 bp | GACCGGCGAGCTCGGGGCGGCCAGGACGTCGGGATCTaGCAAGAAGTGGTTATACCAGGAGACCGGGATGAG | + |
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Preference number: 6 (lower is better) Translates to: DRRARGGQDVGI*QEVVIPGDRDE Trigger: CTCATCCCGGTCTCCTGGTATAACCACTTCTTGTCAGATCCCGACGTCCTGGCCGCCCCGAGCTCGCCGGTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS GCA 72 bp | CGGAGTCACAGGGCAGCGAATTTTGGCAGGGCCGAGTaGTGCGAGAGGAGGAACCACCTTGGGAGGTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: RSHRAANFGRAE*CERRNHLGRWL Trigger: CAGCCACCTCCCAAGGTGGTTCCTCCTCTCGCAGCACTCGGCCCTGCCAAAATTCGCTGCCCTGTGACTCCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS TCA 72 bp | ACTTGGGTGGCGGTCGTGGCATCGGGAATCCAACCTTaGGCTTGCTGGTGTCCCTGTGCTCTGCGGTGGGAG | + |
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Preference number: 6 (lower is better) Translates to: TWVAVVASGIQP*ACWCPCALRWE Trigger: CTCCCACCGCAGAGCACAGGGACACCAGCAAGCTCAAGGTTGGATTCCCGATGCCACGACCGCCACCCAAGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS GCA 72 bp | ATCGGGAATCCAACCTTGAGCTTGCTGGTGTCCCTGTaGTCTGCGGTGGGAGGAGGCCGATGCTGTCCGTCG | + |
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Preference number: 6 (lower is better) Translates to: IGNPTLSLLVSL*SAVGGGRCCPS Trigger: CGACGGACAGCATCGGCCTCCTCCCACCGCAGAGCACAGGGACACCAGCAAGCTCAAGGTTGGATTCCCGAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS GCA 72 bp | GAATCCAACCTTGAGCTTGCTGGTGTCCCTGTGCTCTaGGGTGGGAGGAGGCCGATGCTGTCCGTCGCTGTA | + |
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Preference number: 6 (lower is better) Translates to: ESNLELAGVPVL*GGRRPMLSVAV Trigger: TACAGCGACGGACAGCATCGGCCTCCTCCCACCGCAGAGCACAGGGACACCAGCAAGCTCAAGGTTGGATTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS GCA 72 bp | AGTCACAGGGCAGCGAATTTTGGCAGGGCCGAGTGCTaGGAGAGGAGGAACCACCTTGGGAGGTGGCTGTCT | + |
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Preference number: 6 (lower is better) Translates to: SHRAANFGRAEC*ERRNHLGRWLS Trigger: AGACAGCCACCTCCCAAGGTGGTTCCTCCTCTCGCAGCACTCGGCCCTGCCAAAATTCGCTGCCCTGTGACT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS CCA 72 bp | CTCGGGGCGGCCAGGACGTCGGGATCTGACAAGAAGTaGTTATACCAGGAGACCGGGATGAGGCTGAAGAGG | + |
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Preference number: 6 (lower is better) Translates to: LGAARTSGSDKK*LYQETGMRLKR Trigger: CCTCTTCAGCCTCATCCCGGTCTCCTGGTATAACCACTTCTTGTCAGATCCCGACGTCCTGGCCGCCCCGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS CCA 72 bp | TCCGTCGCTGTAGTACTTGATGGCAGGTGTGAGCGCTaGTTCCGGCCAGTCCACGTAGACGGTGCTGATGCT | + |
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Preference number: 6 (lower is better) Translates to: SVAVVLDGRCER*FRPVHVDGADA Trigger: AGCATCAGCACCGTCTACGTGGACTGGCCGGAACCAGCGCTCACACCTGCCATCAAGTACTACAGCGACGGA 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS CCA 72 bp | TGGCAGGGCCGAGTGCTGCGAGAGGAGGAACCACCTTaGGAGGTGGCTGTCTTCTTTTCTTCTCCCTCAAGC | + |
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Preference number: 6 (lower is better) Translates to: WQGRVLREEEPP*EVAVFFSSPSS Trigger: GCTTGAGGGAGAAGAAAAGAAGACAGCCACCTCCCAAGGTGGTTCCTCCTCTCGCAGCACTCGGCCCTGCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS CCA 72 bp | ATCCATCGGGTTGGTGTAGGACTTGGGTGGCGGTCGTaGCATCGGGAATCCAACCTTGAGCTTGCTGGTGTC | + |
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Preference number: 6 (lower is better) Translates to: IHRVGVGLGWRS*HRESNLELAGV Trigger: GACACCAGCAAGCTCAAGGTTGGATTCCCGATGCCACGACCGCCACCCAAGTCCTACACCAACCCGATGGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS CCA 72 bp | CTCAAGCACATCCATCGGGTTGGTGTAGGACTTGGGTaGCGGTCGTGGCATCGGGAATCCAACCTTGAGCTT | + |
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Preference number: 6 (lower is better) Translates to: LKHIHRVGVGLG*RSWHRESNLEL Trigger: AAGCTCAAGGTTGGATTCCCGATGCCACGACCGCCACCCAAGTCCTACACCAACCCGATGGATGTGCTTGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS CAA 90 bp | CAGCGAATTTTGGCAGGGCCGAGTGCTGCGAGAGGAGGAACCACCTaGGGAGGTGGCTGTCTTCTTTTCTTCTCCCTCAAGCACATCCAT | + |
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Preference number: 6 (lower is better) Translates to: QRILAGPSAARGGTT*GGGCLLFFSLKHIH Trigger: ATGGATGTGCTTGAGGGAGAAGAAAAGAAGACAGCCACCTCCCAAGGTGGTTCCTCCTCTCGCAGCACTCGGCCCTGCCAAAATTCGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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| CDS CCA 72 bp | TCTTCTTTTCTTCTCCCTCAAGCACATCCATCGGGTTaGTGTAGGACTTGGGTGGCGGTCGTGGCATCGGGA | + |
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Preference number: 6 (lower is better) Translates to: SSFLLPQAHPSG*CRTWVAVVASG Trigger: TCCCGATGCCACGACCGCCACCCAAGTCCTACACCAACCCGATGGATGTGCTTGAGGGAGAAGAAAAGAAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060128.7 |
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