Pregenerated sensors for CLDN22 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038064Ensembl transcript IDs: ENSMUST00000038693.8
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AAAGAACTTGTGTCTGAGGCGGATAACAGCCACAGGAGGGAAGTATaGATTTCAGAAAGTCAGAAGCAGGCAGTAGGGGTGATTAAAGTG | + |
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Preference number: 1 (lower is better) Translates to: KELVSEADNSHRREV*ISESQKQAVGVIKV Trigger: CACTTTAATCACCCCTACTGCCTGCTTCTGACTTTCTGAAATGCATACTTCCCTCCTGTGGCTGTTATCCGCCTCAGACACAAGTTCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038693.8 |
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| 3UTR CCA 72 bp | GTAAAGACAGATTCCATCAATAGGTCCTCACCCACTTaGCCTCCATATAGAAAGCAAAAGTGCTTTACTCAG | + |
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Preference number: 3 (lower is better) Translates to: VKTDSINRSSPT*PPYRKQKCFTQ Trigger: CTGAGTAAAGCACTTTTGCTTTCTATATGGAGGCCAAGTGGGTGAGGACCTATTGATGGAATCTGTCTTTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038693.8 |
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| CDS-3UTR GCA 90 bp | CAGCCACAGGAGGGAAGTATGCATTTCAGAAAGTCAGAAGCAGGCAGTAGGGGTGCAGCCCCAGCCCGTTaGACAGGGACATCAAGACCC | + |
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Preference number: 4 (lower is better) Translates to: QPQEGSMHFRKSEAGSRGAAPAR*TGTSRP Trigger: GGGTCTTGATGTCCCTGTGCAACGGGCTGGGGCTGC...ACCCCTACTGCCTGCTTCTGACTTTCTGAAATGCATACTTCCCTCCTGTGGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038693.8 |
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| CDS-3UTR CCA 90 bp | AGCCACAGGAGGGAAGTATGCATTTCAGAAAGTCAGAAGCAGGCAGTAGGGGTGTCCCGCACCGTCTTGTaGGCCACCCAGGAGACAGGA | + |
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Preference number: 4 (lower is better) Translates to: SHRREVCISESQKQAVGVSRTVL*ATQETG Trigger: TCCTGTCTCCTGGGTGGCCCACAAGACGGTGCGGGA...CACCCCTACTGCCTGCTTCTGACTTTCTGAAATGCATACTTCCCTCCTGTGGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038693.8 |
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| CDS-3UTR GCA 90 bp | AGCCACAGGAGGGAAGTATGCATTTCAGAAAGTCAGAAGCAGGCAGTAGGGGTGATAGTGACTCGAGGCTaGAGGAGCCGGGCTCCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: SHRREVCISESQKQAVGVIVTRG*RSRAPA Trigger: TGCTGGAGCCCGGCTCCTGCAGCCTCGAGTCACTAT...CACCCCTACTGCCTGCTTCTGACTTTCTGAAATGCATACTTCCCTCCTGTGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038693.8 |
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| CDS-3UTR CCA 90 bp | AACAGCCACAGGAGGGAAGTATGCATTTCAGAAAGTCAGAAGCAGGCAGTAGGGATTTCCAGAGCCCCATaGTCCAGTTCTCCATCTCGT | + |
|
Preference number: 4 (lower is better) Translates to: NSHRREVCISESQKQAVGISRAP*SSSPSR Trigger: ACGAGATGGAGAACTGGACCATGGGGCTCTGGAAAT...CCCTACTGCCTGCTTCTGACTTTCTGAAATGCATACTTCCCTCCTGTGGCTGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038693.8 |
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| CDS-3UTR CCA 90 bp | AGGGAAGTATGCATTTCAGAAAGTCAGAAGCAGGCAGTAGGGGTGATTAAAGTGCCCCAAACTCCCACCTaGGCACAATCTCAGGCATGG | + |
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Preference number: 4 (lower is better) Translates to: REVCISESQKQAVGVIKVPQTPT*AQSQAW Trigger: CCATGCCTGAGATTGTGCCCAGGTGGGAGTTTGGGG...CACTTTAATCACCCCTACTGCCTGCTTCTGACTTTCTGAAATGCATACTTCCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038693.8 |
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| CDS-3UTR GCA 90 bp | AGGGAAGTATGCATTTCAGAAAGTCAGAAGCAGGCAGTAGGGGTGATTAAAGTGTGCTTCAGCTCCAGATaGTGCTGGTGGTCTCGAGGT | + |
|
Preference number: 4 (lower is better) Translates to: REVCISESQKQAVGVIKVCFSSR*CWWSRG Trigger: ACCTCGAGACCACCAGCAGCATCTGGAGCTGAAGCA...CACTTTAATCACCCCTACTGCCTGCTTCTGACTTTCTGAAATGCATACTTCCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038693.8 |
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| CDS-3UTR CCA 90 bp | AGGGAAGTATGCATTTCAGAAAGTCAGAAGCAGGCAGTAGGGGTGATTAAAGTGGGGACATCAAGACCCTaGAGACCTGCAGTTCAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: REVCISESQKQAVGVIKVGTSRP*RPAVQL Trigger: CAGCTGAACTGCAGGTCTCCAGGGTCTTGATGTCCC...CACTTTAATCACCCCTACTGCCTGCTTCTGACTTTCTGAAATGCATACTTCCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038693.8 |
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| CDS GCA 90 bp | TTGCTTCAGCTCCAGATGCTGCTGGTGGTCTCGAGGTCCCGCCACTaGATAGTGACTCGAGGCTGCAGGAGCCGGGCTCCAGCAGGCTGC | + |
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Preference number: 5 (lower is better) Translates to: LLQLQMLLVVSRSRH*IVTRGCRSRAPAGC Trigger: GCAGCCTGCTGGAGCCCGGCTCCTGCAGCCTCGAGTCACTATGCAGTGGCGGGACCTCGAGACCACCAGCAGCATCTGGAGCTGAAGCAA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038693.8 |
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| CDS-3UTR CAA 90 bp | AGCCACAGGAGGGAAGTATGCATTTCAGAAAGTCAGAAGCAGGCAGTAGGGGTGAGCAGCCCCAGCCCGTaGCACAGGGACATCAAGACC | + |
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Preference number: 5 (lower is better) Translates to: SHRREVCISESQKQAVGVSSPSP*HRDIKT Trigger: GGTCTTGATGTCCCTGTGCAACGGGCTGGGGCTGCT...CACCCCTACTGCCTGCTTCTGACTTTCTGAAATGCATACTTCCCTCCTGTGGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038693.8 |
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| CDS-3UTR CAA 90 bp | CACAGGAGGGAAGTATGCATTTCAGAAAGTCAGAAGCAGGCAGTAGGGGTGATTGATTTCTGGATTGGCTaGCTTCAGCTCCAGATGCTG | + |
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Preference number: 5 (lower is better) Translates to: HRREVCISESQKQAVGVIDFWIG*LQLQML Trigger: CAGCATCTGGAGCTGAAGCAAGCCAATCCAGAAATC...AATCACCCCTACTGCCTGCTTCTGACTTTCTGAAATGCATACTTCCCTCCTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038693.8 |
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