Pregenerated sensors for CLDN2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047230Ensembl transcript IDs: ENSMUST00000054889.4, ENSMUST00000135224.2
Found 99 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCAGGAAGCTGGGTCAGACACCCCAGTGGGAGGCAGAGCTTTCAGTaGTCCGTGTTCACCTTGGCTTCTGGGCAATTCCTCTGTGGAGTC | + |
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Preference number: 1 (lower is better) Translates to: AGSWVRHPSGRQSFQ*SVFTLASGQFLCGV Trigger: GACTCCACAGAGGAATTGCCCAGAAGCCAAGGTGAACACGGACCACTGAAAGCTCTGCCTCCCACTGGGGTGTCTGACCCAGCTTCCTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR CCA 90 bp | CTCCAAGTCTTGTGGTTTAGCAGGAAGCTGGGTCAGACACCCCAGTaGGAGGCAGAGCTTTCAGTGGTCCGTGTTCACCTTGGCTTCTGG | + |
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Preference number: 1 (lower is better) Translates to: LQVLWFSRKLGQTPQ*EAELSVVRVHLGFW Trigger: CCAGAAGCCAAGGTGAACACGGACCACTGAAAGCTCTGCCTCCCACTGGGGTGTCTGACCCAGCTTCCTGCTAAACCACAAGACTTGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR GCA 90 bp | CCTCACATATGGGCCTCTCTTGCCGGTGCTGAAGTTTTGATGAGGTaGGCTGGGGATCTTCTGAAGCTGGTGATATTAAGCTGGTGGTGG | + |
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Preference number: 1 (lower is better) Translates to: PHIWASLAGAEVLMR*AGDLLKLVILSWWW Trigger: CCACCACCAGCTTAATATCACCAGCTTCAGAAGATCCCCAGCGCACCTCATCAAAACTTCAGCACCGGCAAGAGAGGCCCATATGTGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR TCA 90 bp | GAAAAGCTAGCTTGGCAAGCGTCCTTGGCAATGCCATCTACATGCTaGCACCCCTCTTCTCATCTCTGCCTTCACTCCATCCAATGGCCA | + |
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Preference number: 1 (lower is better) Translates to: EKLAWQASLAMPSTC*HPSSHLCLHSIQWP Trigger: TGGCCATTGGATGGAGTGAAGGCAGAGATGAGAAGAGGGGTGTCAGCATGTAGATGGCATTGCCAAGGACGCTTGCCAAGCTAGCTTTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR GCA 90 bp | CCGTTCTCCCACCTCAAGCACAATCCCAGGCAGAAGTTCACCAATTaGTCAGGTCATGAACACAACACCTTGGTCACAGATGTTCCACAC | + |
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Preference number: 1 (lower is better) Translates to: PFSHLKHNPRQKFTN*SGHEHNTLVTDVPH Trigger: GTGTGGAACATCTGTGACCAAGGTGTTGTGTTCATGACCTGAGCAATTGGTGAACTTCTGCCTGGGATTGTGCTTGAGGTGGGAGAACGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR CCA 90 bp | AAAGGGCAGAAGAGAGCCTCTGGGCATAGCCTAAAGTGGCAGAGATaGGATTTGGGCTTTTGGGTTGAGCATTCAAAGCACAGGAGGTAC | + |
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Preference number: 1 (lower is better) Translates to: KGQKRASGHSLKWQR*DLGFWVEHSKHRRY Trigger: GTACCTCCTGTGCTTTGAATGCTCAACCCAAAAGCCCAAATCCCATCTCTGCCACTTTAGGCTATGCCCAGAGGCTCTCTTCTGCCCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR TCA 90 bp | GTGCTGTGGTCTTTCAGAGGCTCTGTAGTGCTGAGACATAGACCCTaGTGGGTTGGTCTTCCATCAAGTCTAAAGTATCTGGTAGGGCTG | + |
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Preference number: 1 (lower is better) Translates to: VLWSFRGSVVLRHRP*WVGLPSSLKYLVGL Trigger: CAGCCCTACCAGATACTTTAGACTTGATGGAAGACCAACCCATCAGGGTCTATGTCTCAGCACTACAGAGCCTCTGAAAGACCACAGCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR TCA 90 bp | CCTCAAGCACAATCCCAGGCAGAAGTTCACCAATTGCTCAGGTCATaGACACAACACCTTGGTCACAGATGTTCCACACTGGAGACTTTG | + |
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Preference number: 1 (lower is better) Translates to: PQAQSQAEVHQLLRS*TQHLGHRCSTLETL Trigger: CAAAGTCTCCAGTGTGGAACATCTGTGACCAAGGTGTTGTGTTCATGACCTGAGCAATTGGTGAACTTCTGCCTGGGATTGTGCTTGAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR TCA 90 bp | GTAATTGAGTTAAGAGCCAACCTCAGCCAGAGGGAGAGGGTCTTTTaGTCACAGGTGATTAGTCAACAGGATATGATTGGTTTGGGGACA | + |
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Preference number: 1 (lower is better) Translates to: VIELRANLSQRERVF*SQVISQQDMIGLGT Trigger: TGTCCCCAAACCAATCATATCCTGTTGACTAATCACCTGTGATCAAAAGACCCTCTCCCTCTGGCTGAGGTTGGCTCTTAACTCAATTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR CCA 90 bp | GGATGCCATGAGATAGCTTTCCTTCAGTTCATTCACAATGCAGTCTaGACATACTGCATTCATAGCAAAACTGGAAGAGAAGCTTCAGGG | + |
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Preference number: 1 (lower is better) Translates to: GCHEIAFLQFIHNAV*TYCIHSKTGREASG Trigger: CCCTGAAGCTTCTCTTCCAGTTTTGCTATGAATGCAGTATGTCCAGACTGCATTGTGAATGAACTGAAGGAAAGCTATCTCATGGCATCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR CCA 90 bp | ATGAGCAAGTTCTCCAAGCATGGGGATGACTTAGTTAAAAGGAAATaGCTTCCAGGTCAGCATATCAGCTTGAACACAAGTAATATGGTG | + |
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Preference number: 1 (lower is better) Translates to: MSKFSKHGDDLVKRK*LPGQHISLNTSNMV Trigger: CACCATATTACTTGTGTTCAAGCTGATATGCTGACCTGGAAGCCATTTCCTTTTAACTAAGTCATCCCCATGCTTGGAGAACTTGCTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR-3UTR GCA 90 bp | CAGGAAGCTGGGTCAGACACCCCAGTGGGAGGCAGAGCTTTCAGTGGTCCGTGTGGTTGCCTCCCATCCTaGACCCAGCTGTATTCTGCT | + |
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Preference number: 2 (lower is better) Translates to: QEAGSDTPVGGRAFSGPCGCLPS*TQLYSA Trigger: AGCAGAATACAGCTGGGTGCAGGATGGGAGGCAACC...ACACGGACCACTGAAAGCTCTGCCTCCCACTGGGGTGTCTGACCCAGCTTCCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR-3UTR CCA 90 bp | CTGTTGGACAGGGAACCAGTCTCCGTTCTCCCACCTCAAGCACAATCCCAGGCAGGTCAGACACCCCAGTaGGAGGCAGAGCTTTCAGTG | + |
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Preference number: 2 (lower is better) Translates to: LLDREPVSVLPPQAQSQAGQTPQ*EAELSV Trigger: CACTGAAAGCTCTGCCTCCCACTGGGGTGTCTGACC...TGCCTGGGATTGTGCTTGAGGTGGGAGAACGGAGACTGGTTCCCTGTCCAACAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR-3UTR GCA 90 bp | CTGTTGGACAGGGAACCAGTCTCCGTTCTCCCACCTCAAGCACAATCCCAGGCACCCTCTTCTCATCTCTaGCTTCACTCCATCCAATGG | + |
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Preference number: 2 (lower is better) Translates to: LLDREPVSVLPPQAQSQAPSSHL*LHSIQW Trigger: CCATTGGATGGAGTGAAGGCAGAGATGAGAAGAGGG...TGCCTGGGATTGTGCTTGAGGTGGGAGAACGGAGACTGGTTCCCTGTCCAACAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR-3UTR GCA 90 bp | CCTCACATATGGGCCTCTCTTGCCGGTGCTGAAGTTTTGATGAGGTGCGCTGGGAAAGGACCTCTCTGGTaGTGTGGTCTTTCAGAGGCT | + |
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Preference number: 2 (lower is better) Translates to: PHIWASLAGAEVLMRCAGKGPLW*CGLSEA Trigger: AGCCTCTGAAAGACCACAGCACCAGAGAGGTCCTTT...CCCAGCGCACCTCATCAAAACTTCAGCACCGGCAAGAGAGGCCCATATGTGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR-3UTR TCA 90 bp | CCTCACATATGGGCCTCTCTTGCCGGTGCTGAAGTTTTGATGAGGTGCGCTGGGCTGTCCCTTAGTAATTaGGTTAAGAGCCAACCTCAG | + |
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Preference number: 2 (lower is better) Translates to: PHIWASLAGAEVLMRCAGLSLSN*VKSQPQ Trigger: CTGAGGTTGGCTCTTAACTCAATTACTAAGGGACAG...CCCAGCGCACCTCATCAAAACTTCAGCACCGGCAAGAGAGGCCCATATGTGAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR-3UTR TCA 90 bp | CCTCACATATGGGCCTCTCTTGCCGGTGCTGAAGTTTTGATGAGGTGCGCTGGGAATGTCTCTGGTTTATaGCCCCCATCTACCACAGAA | + |
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Preference number: 2 (lower is better) Translates to: PHIWASLAGAEVLMRCAGNVSGL*PPSTTE Trigger: TTCTGTGGTAGATGGGGGTCATAAACCAGAGACATT...CCCAGCGCACCTCATCAAAACTTCAGCACCGGCAAGAGAGGCCCATATGTGAGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR-3UTR CCA 90 bp | CTAGGGCTCCAAGTCTTGTGGTTTAGCAGGAAGCTGGGTCAGACACCCCAGTGGCTAAAGTGGCAGAGATaGGATTTGGGCTTTTGGGTT | + |
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Preference number: 2 (lower is better) Translates to: LGLQVLWFSRKLGQTPQWLKWQR*DLGFWV Trigger: AACCCAAAAGCCCAAATCCCATCTCTGCCACTTTAG...CCACTGGGGTGTCTGACCCAGCTTCCTGCTAAACCACAAGACTTGGAGCCCTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR CAA 90 bp | GGAGGTACTTTAGTGAGGTCAGGTGAGGGAAATAGAAAAGCTAGCTaGGCAAGCGTCCTTGGCAATGCCATCTACATGCTGACACCCCTC | + |
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Preference number: 2 (lower is better) Translates to: GGTLVRSGEGNRKAS*ASVLGNAIYMLTPL Trigger: GAGGGGTGTCAGCATGTAGATGGCATTGCCAAGGACGCTTGCCAAGCTAGCTTTTCTATTTCCCTCACCTGACCTCACTAAAGTACCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR-3UTR TCA 90 bp | CACCTCAAGCACAATCCCAGGCAGAAGTTCACCAATTGCTCAGGTCATGAACACCAGTGCTTCCATCCCTaGCCCACAAATGTACGGGAA | + |
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Preference number: 2 (lower is better) Translates to: HLKHNPRQKFTNCSGHEHQCFHP*PTNVRE Trigger: TTCCCGTACATTTGTGGGTCAGGGATGGAAGCACTG...GTGTTCATGACCTGAGCAATTGGTGAACTTCTGCCTGGGATTGTGCTTGAGGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR CAA 90 bp | CAGAAGAGAGCCTCTGGGCATAGCCTAAAGTGGCAGAGATGGGATTaGGGCTTTTGGGTTGAGCATTCAAAGCACAGGAGGTACTTTAGT | + |
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Preference number: 2 (lower is better) Translates to: QKRASGHSLKWQRWD*GFWVEHSKHRRYFS Trigger: ACTAAAGTACCTCCTGTGCTTTGAATGCTCAACCCAAAAGCCCAAATCCCATCTCTGCCACTTTAGGCTATGCCCAGAGGCTCTCTTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR CAA 90 bp | ATTATAGGAGATGGCCTGAGAAGGGATTCTGTCGGGTTTTGCTGTTaGTTTTGTTTCTTTAGATCCCAGGTTGCCTCCCATCCTGCACCC | + |
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Preference number: 2 (lower is better) Translates to: IIGDGLRRDSVGFCC*FCFFRSQVASHPAP Trigger: GGGTGCAGGATGGGAGGCAACCTGGGATCTAAAGAAACAAAACAAACAGCAAAACCCGACAGAATCCCTTCTCAGGCCATCTCCTATAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR-3UTR TCA 90 bp | GAAATGGAGCATTTTAAGACCGTGGAAATAAAACTGTTGGACAGGGAACCAGTCGCGATGACTCAAGTGTaGAAAGTGACAAAGGACCTC | + |
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Preference number: 2 (lower is better) Translates to: EMEHFKTVEIKLLDREPVAMTQV*KVTKDL Trigger: GAGGTCCTTTGTCACTTTTCACACTTGAGTCATCGC...GACTGGTTCCCTGTCCAACAGTTTTATTTCCACGGTCTTAAAATGCTCCATTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR-3UTR CCA 90 bp | TCTGCTGGATGCCATGAGATAGCTTTCCTTCAGTTCATTCACAATGCAGTCTGGTTACACATGATTCAGTaGCAATGTCCTTTGCTTGTG | + |
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Preference number: 2 (lower is better) Translates to: SAGCHEIAFLQFIHNAVWLHMIQ*QCPLLV Trigger: CACAAGCAAAGGACATTGCCACTGAATCATGTGTAA...CCAGACTGCATTGTGAATGAACTGAAGGAAAGCTATCTCATGGCATCCAGCAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR-3UTR CCA 90 bp | CCATCTACCACAGAAGAAATGGAGCATTTTAAGACCGTGGAAATAAAACTGTTGCTTGGCAAGCGTCCTTaGCAATGCCATCTACATGCT | + |
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Preference number: 2 (lower is better) Translates to: PSTTEEMEHFKTVEIKLLLGKRP*QCHLHA Trigger: AGCATGTAGATGGCATTGCCAAGGACGCTTGCCAAG...CAACAGTTTTATTTCCACGGTCTTAAAATGCTCCATTTCTTCTGTGGTAGATGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR-3UTR CCA 90 bp | GAGCATTTTAAGACCGTGGAAATAAAACTGTTGGACAGGGAACCAGTCTCCGTTTCAACAGGATATGATTaGTTTGGGGACAGATCTCCA | + |
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Preference number: 2 (lower is better) Translates to: EHFKTVEIKLLDREPVSVSTGYD*FGDRSP Trigger: TGGAGATCTGTCCCCAAACCAATCATATCCTGTTGA...AACGGAGACTGGTTCCCTGTCCAACAGTTTTATTTCCACGGTCTTAAAATGCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR-3UTR TCA 90 bp | ATTCACAATGCAGTCTGGACATACTGCATTCATAGCAAAACTGGAAGAGAAGCTAGGGAGAGGGTCTTTTaGTCACAGGTGATTAGTCAA | + |
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Preference number: 2 (lower is better) Translates to: IHNAVWTYCIHSKTGREARERVF*SQVISQ Trigger: TTGACTAATCACCTGTGATCAAAAGACCCTCTCCCT...AGCTTCTCTTCCAGTTTTGCTATGAATGCAGTATGTCCAGACTGCATTGTGAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR-3UTR TCA 90 bp | ATGAGGATTAGGCAATTTATATATTGGGAGTTGGAGGAGGGAAAGGAAAGAACAGACTTTGCATACCTGTaGGAGTATCTTCTGATGGGC | + |
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Preference number: 2 (lower is better) Translates to: MRIRQFIYWELEEGKERTDFAYL*EYLLMG Trigger: GCCCATCAGAAGATACTCTCACAGGTATGCAAAGTC...TGTTCTTTCCTTTCCCTCCTCCAACTCCCAATATATAAATTGCCTAATCCTCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR-3UTR CCA 90 bp | CCATCTACCACAGAAGAAATGGAGCATTTTAAGACCGTGGAAATAAAACTGTTGGGCAGAGATGGGATTTaGGCTTTTGGGTTGAGCATT | + |
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Preference number: 2 (lower is better) Translates to: PSTTEEMEHFKTVEIKLLGRDGI*AFGLSI Trigger: AATGCTCAACCCAAAAGCCCAAATCCCATCTCTGCC...CAACAGTTTTATTTCCACGGTCTTAAAATGCTCCATTTCTTCTGTGGTAGATGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR-3UTR TCA 90 bp | CCATCTACCACAGAAGAAATGGAGCATTTTAAGACCGTGGAAATAAAACTGTTGTTCAGGGCCCATTACTaGCTAATCCATTTCTTTGGC | + |
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Preference number: 2 (lower is better) Translates to: PSTTEEMEHFKTVEIKLLFRAHY*LIHFFG Trigger: GCCAAAGAAATGGATTAGTCAGTAATGGGCCCTGAA...CAACAGTTTTATTTCCACGGTCTTAAAATGCTCCATTTCTTCTGTGGTAGATGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR CCA 72 bp | GTGGGAGGCAGAGCTTTCAGTGGTCCGTGTTCACCTTaGCTTCTGGGCAATTCCTCTGTGGAGTCAGAGGGC | + |
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Preference number: 3 (lower is better) Translates to: VGGRAFSGPCSP*LLGNSSVESEG Trigger: GCCCTCTGACTCCACAGAGGAATTGCCCAGAAGCCAAGGTGAACACGGACCACTGAAAGCTCTGCCTCCCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR CCA 72 bp | TGGGTCAGACACCCCAGTGGGAGGCAGAGCTTTCAGTaGTCCGTGTTCACCTTGGCTTCTGGGCAATTCCTC | + |
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Preference number: 3 (lower is better) Translates to: WVRHPSGRQSFQ*SVFTLASGQFL Trigger: GAGGAATTGCCCAGAAGCCAAGGTGAACACGGACCACTGAAAGCTCTGCCTCCCACTGGGGTGTCTGACCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR CCA 72 bp | GTCCGTGTTCACCTTGGCTTCTGGGCAATTCCTCTGTaGAGTCAGAGGGCAGCAGCCATGTGCTTTCCCTTG | + |
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Preference number: 3 (lower is better) Translates to: VRVHLGFWAIPL*SQRAAAMCFPL Trigger: CAAGGGAAAGCACATGGCTGCTGCCCTCTGACTCCACAGAGGAATTGCCCAGAAGCCAAGGTGAACACGGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR CCA 72 bp | TTGTGGTTTAGCAGGAAGCTGGGTCAGACACCCCAGTaGGAGGCAGAGCTTTCAGTGGTCCGTGTTCACCTT | + |
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Preference number: 3 (lower is better) Translates to: LWFSRKLGQTPQ*EAELSVVRVHL Trigger: AAGGTGAACACGGACCACTGAAAGCTCTGCCTCCCACTGGGGTGTCTGACCCAGCTTCCTGCTAAACCACAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR TCA 72 bp | AGGGAAACCTCACATATGGGCCTCTCTTGCCGGTGCTaGAGTTTTGATGAGGTGCGCTGGGGATCTTCTGAA | + |
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Preference number: 3 (lower is better) Translates to: RETSHMGLSCRC*SFDEVRWGSSE Trigger: TTCAGAAGATCCCCAGCGCACCTCATCAAAACTTCAGCACCGGCAAGAGAGGCCCATATGTGAGGTTTCCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR GCA 72 bp | TGGGCCTCTCTTGCCGGTGCTGAAGTTTTGATGAGGTaGGCTGGGGATCTTCTGAAGCTGGTGATATTAAGC | + |
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Preference number: 3 (lower is better) Translates to: WASLAGAEVLMR*AGDLLKLVILS Trigger: GCTTAATATCACCAGCTTCAGAAGATCCCCAGCGCACCTCATCAAAACTTCAGCACCGGCAAGAGAGGCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR-3UTR CAA 90 bp | CCTCACATATGGGCCTCTCTTGCCGGTGCTGAAGTTTTGATGAGGTGCGCTGGGTCTTTGGCTGGAGATTaGAGAAGGGAGCTAGAAATG | + |
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Preference number: 3 (lower is better) Translates to: PHIWASLAGAEVLMRCAGSLAGD*RRELEM Trigger: CATTTCTAGCTCCCTTCTCAAATCTCCAGCCAAAGA...CCCAGCGCACCTCATCAAAACTTCAGCACCGGCAAGAGAGGCCCATATGTGAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR-3UTR CAA 90 bp | TCTGCTGGATGCCATGAGATAGCTTTCCTTCAGTTCATTCACAATGCAGTCTGGGCTTGGCAAGCGTCCTaGGCAATGCCATCTACATGC | + |
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Preference number: 3 (lower is better) Translates to: SAGCHEIAFLQFIHNAVWAWQAS*AMPSTC Trigger: GCATGTAGATGGCATTGCCAAGGACGCTTGCCAAGC...CCAGACTGCATTGTGAATGAACTGAAGGAAAGCTATCTCATGGCATCCAGCAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR-3UTR CAA 90 bp | GGGAATTATAGGAGATGGCCTGAGAAGGGATTCTGTCGGGTTTTGCTGTTTGTTTCTTTAGATCCCAGGTaGCCTCCCATCCTGCACCCA | + |
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Preference number: 3 (lower is better) Translates to: GNYRRWPEKGFCRVLLFVSLDPR*PPILHP Trigger: TGGGTGCAGGATGGGAGGCAACCTGGGATCTAAAGA...AACAAACAGCAAAACCCGACAGAATCCCTTCTCAGGCCATCTCCTATAATTCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR-3UTR CAA 90 bp | CACCTCAAGCACAATCCCAGGCAGAAGTTCACCAATTGCTCAGGTCATGAACACGCCATGTGCTTTCCCTaGGCTTCTTGTGCTTTCCTT | + |
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Preference number: 3 (lower is better) Translates to: HLKHNPRQKFTNCSGHEHAMCFP*ASCAFL Trigger: AAGGAAAGCACAAGAAGCCAAGGGAAAGCACATGGC...GTGTTCATGACCTGAGCAATTGGTGAACTTCTGCCTGGGATTGTGCTTGAGGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR-3UTR CAA 90 bp | CTGTTGGACAGGGAACCAGTCTCCGTTCTCCCACCTCAAGCACAATCCCAGGCAAGAAAAACTGGTTTATaGTCCTTAAGGAAACCCTTG | + |
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Preference number: 3 (lower is better) Translates to: LLDREPVSVLPPQAQSQARKTGL*SLRKPL Trigger: CAAGGGTTTCCTTAAGGACAATAAACCAGTTTTTCT...TGCCTGGGATTGTGCTTGAGGTGGGAGAACGGAGACTGGTTCCCTGTCCAACAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR TCA 72 bp | CCCATCCTGCACCCAGCTGTATTCTGCTGGATGCCATaGGATAGCTTTCCTTCAGTTCATTCACAATGCAGT | + |
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Preference number: 3 (lower is better) Translates to: PILHPAVFCWMP*DSFPSVHSQCS Trigger: ACTGCATTGTGAATGAACTGAAGGAAAGCTATCTCATGGCATCCAGCAGAATACAGCTGGGTGCAGGATGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR TCA 72 bp | CAATCCCAGGCAGAAGTTCACCAATTGCTCAGGTCATaGACACAACACCTTGGTCACAGATGTTCCACACTG | + |
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Preference number: 3 (lower is better) Translates to: QSQAEVHQLLRS*TQHLGHRCSTL Trigger: CAGTGTGGAACATCTGTGACCAAGGTGTTGTGTTCATGACCTGAGCAATTGGTGAACTTCTGCCTGGGATTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR GCA 72 bp | CACCTCAAGCACAATCCCAGGCAGAAGTTCACCAATTaGTCAGGTCATGAACACAACACCTTGGTCACAGAT | + |
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Preference number: 3 (lower is better) Translates to: HLKHNPRQKFTN*SGHEHNTLVTD Trigger: ATCTGTGACCAAGGTGTTGTGTTCATGACCTGAGCAATTGGTGAACTTCTGCCTGGGATTGTGCTTGAGGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR-3UTR CAA 90 bp | GAGCATTTTAAGACCGTGGAAATAAAACTGTTGGACAGGGAACCAGTCTCCGTTTGGCAGAGATGGGATTaGGGCTTTTGGGTTGAGCAT | + |
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Preference number: 3 (lower is better) Translates to: EHFKTVEIKLLDREPVSVWQRWD*GFWVEH Trigger: ATGCTCAACCCAAAAGCCCAAATCCCATCTCTGCCA...AACGGAGACTGGTTCCCTGTCCAACAGTTTTATTTCCACGGTCTTAAAATGCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR TCA 72 bp | TCTTTCAGAGGCTCTGTAGTGCTGAGACATAGACCCTaGTGGGTTGGTCTTCCATCAAGTCTAAAGTATCTG | + |
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Preference number: 3 (lower is better) Translates to: SFRGSVVLRHRP*WVGLPSSLKYL Trigger: CAGATACTTTAGACTTGATGGAAGACCAACCCATCAGGGTCTATGTCTCAGCACTACAGAGCCTCTGAAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR TCA 72 bp | TTAAGCTGGTGGTGGTGGGGAAATGTCTCTGGTTTATaGCCCCCATCTACCACAGAAGAAATGGAGCATTTT | + |
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Preference number: 3 (lower is better) Translates to: LSWWWWGNVSGL*PPSTTEEMEHF Trigger: AAAATGCTCCATTTCTTCTGTGGTAGATGGGGGTCATAAACCAGAGACATTTCCCCACCACCACCAGCTTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| 3UTR CCA 72 bp | CATAGCCTAAAGTGGCAGAGATGGGATTTGGGCTTTTaGGTTGAGCATTCAAAGCACAGGAGGTACTTTAGT | + |
|
Preference number: 3 (lower is better) Translates to: HSLKWQRWDLGF*VEHSKHRRYFS Trigger: ACTAAAGTACCTCCTGTGCTTTGAATGCTCAACCCAAAAGCCCAAATCCCATCTCTGCCACTTTAGGCTATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| 3UTR CCA 72 bp | CATGAACACAACACCTTGGTCACAGATGTTCCACACTaGAGACTTTGCATACCTGTGAGAGTATCTTCTGAT | + |
|
Preference number: 3 (lower is better) Translates to: HEHNTLVTDVPH*RLCIPVRVSSD Trigger: ATCAGAAGATACTCTCACAGGTATGCAAAGTCTCCAGTGTGGAACATCTGTGACCAAGGTGTTGTGTTCATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| 3UTR-3UTR CAA 90 bp | CGCATGTCAAAGGGCAGTTCTAGAAAAACTGGTTTATTGTCCTTAAGGAAACCCAATAGAAAAGCTAGCTaGGCAAGCGTCCTTGGCAAT | + |
|
Preference number: 3 (lower is better) Translates to: RMSKGSSRKTGLLSLRKPNRKAS*ASVLGN Trigger: ATTGCCAAGGACGCTTGCCAAGCTAGCTTTTCTATT...GGGTTTCCTTAAGGACAATAAACCAGTTTTTCTAGAACTGCCCTTTGACATGCG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| 3UTR-3UTR CAA 90 bp | GGGGAAATGTCTCTGGTTTATGACCCCCATCTACCACAGAAGAAATGGAGCATTGTCGGGTTTTGCTGTTaGTTTTGTTTCTTTAGATCC | + |
|
Preference number: 3 (lower is better) Translates to: GEMSLVYDPHLPQKKWSIVGFCC*FCFFRS Trigger: GGATCTAAAGAAACAAAACAAACAGCAAAACCCGAC...AATGCTCCATTTCTTCTGTGGTAGATGGGGGTCATAAACCAGAGACATTTCCCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| 3UTR TCA 72 bp | ATAGCAATTGCCCTCCAAGTACTTACAGTGAACTTTTaGGATCACACAGACAGACAGACGGATAGAGTCACA | + |
|
Preference number: 3 (lower is better) Translates to: IAIALQVLTVNF*DHTDRQTDRVT Trigger: TGTGACTCTATCCGTCTGTCTGTCTGTGTGATCTCAAAAGTTCACTGTAAGTACTTGGAGGGCAATTGCTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| 3UTR GCA 72 bp | TTCCTTCAGTTCATTCACAATGCAGTCTGGACATACTaGATTCATAGCAAAACTGGAAGAGAAGCTTCAGGG | + |
|
Preference number: 3 (lower is better) Translates to: FLQFIHNAVWTY*IHSKTGREASG Trigger: CCCTGAAGCTTCTCTTCCAGTTTTGCTATGAATGCAGTATGTCCAGACTGCATTGTGAATGAACTGAAGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| 3UTR CCA 72 bp | TTCTCCAAGCATGGGGATGACTTAGTTAAAAGGAAATaGCTTCCAGGTCAGCATATCAGCTTGAACACAAGT | + |
|
Preference number: 3 (lower is better) Translates to: FSKHGDDLVKRK*LPGQHISLNTS Trigger: ACTTGTGTTCAAGCTGATATGCTGACCTGGAAGCCATTTCCTTTTAACTAAGTCATCCCCATGCTTGGAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| 3UTR-3UTR CAA 90 bp | GAGCATTTTAAGACCGTGGAAATAAAACTGTTGGACAGGGAACCAGTCTCCGTTGGATTCTGTCGGGTTTaGCTGTTTGTTTTGTTTCTT | + |
|
Preference number: 3 (lower is better) Translates to: EHFKTVEIKLLDREPVSVGFCRV*LFVLFL Trigger: AAGAAACAAAACAAACAGCAAAACCCGACAGAATCC...AACGGAGACTGGTTCCCTGTCCAACAGTTTTATTTCCACGGTCTTAAAATGCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| CDS-3UTR CCA 90 bp | CCTCACATATGGGCCTCTCTTGCCGGTGCTGAAGTTTTGATGAGGTGCGCTGGGTGGACGTCACCATCATaGCCTGGGCAGCCTGGATGT | + |
|
Preference number: 4 (lower is better) Translates to: PHIWASLAGAEVLMRCAGWTSPS*PGQPGC Trigger: ACATCCAGGCTGCCCAGGCCATGATGGTGACGTCCA...CCCAGCGCACCTCATCAAAACTTCAGCACCGGCAAGAGAGGCCCATATGTGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| CDS-3UTR TCA 90 bp | CTGTTGGACAGGGAACCAGTCTCCGTTCTCCCACCTCAAGCACAATCCCAGGCAAGATATCGCACTGGGTaGTGCCTGTGCTGTGTGTCG | + |
|
Preference number: 4 (lower is better) Translates to: LLDREPVSVLPPQAQSQARYRTG*CLCCVS Trigger: CGACACACAGCACAGGCATCACCCAGTGCGATATCT...TGCCTGGGATTGTGCTTGAGGTGGGAGAACGGAGACTGGTTCCCTGTCCAACAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| CDS-3UTR TCA 90 bp | CCTCACATATGGGCCTCTCTTGCCGGTGCTGAAGTTTTGATGAGGTGCGCTGGGCCCAGTCAGGCTGTATaGGTTGAACTCACTCTTGGC | + |
|
Preference number: 4 (lower is better) Translates to: PHIWASLAGAEVLMRCAGPSQAV*VELTLG Trigger: GCCAAGAGTGAGTTCAACTCATACAGCCTGACTGGG...CCCAGCGCACCTCATCAAAACTTCAGCACCGGCAAGAGAGGCCCATATGTGAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| 3UTR CAA 72 bp | CCTCACATATGGGCCTCTCTTGCCGGTGCTGAAGTTTaGATGAGGTGCGCTGGGGATCTTCTGAAGCTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: PHIWASLAGAEV*MRCAGDLLKLV Trigger: CACCAGCTTCAGAAGATCCCCAGCGCACCTCATCAAAACTTCAGCACCGGCAAGAGAGGCCCATATGTGAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| CDS-3UTR GCA 90 bp | CAGGAAGCTGGGTCAGACACCCCAGTGGGAGGCAGAGCTTTCAGTGGTCCGTGTAGAAGTCCCGAAGGATaGCATGAAGATTCCAAGCAA | + |
|
Preference number: 4 (lower is better) Translates to: QEAGSDTPVGGRAFSGPCRSPEG*HEDSKQ Trigger: TTGCTTGGAATCTTCATGGCATCCTTCGGGACTTCT...ACACGGACCACTGAAAGCTCTGCCTCCCACTGGGGTGTCTGACCCAGCTTCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| CDS-3UTR TCA 90 bp | TCAGTGGTCCGTGTTCACCTTGGCTTCTGGGCAATTCCTCTGTGGAGTCAGAGGGGATGCCACCAAGGATaGAAAAGACTCCACCCACTA | + |
|
Preference number: 4 (lower is better) Translates to: SVVRVHLGFWAIPLWSQRGCHQG*KRLHPL Trigger: TAGTGGGTGGAGTCTTTTTCATCCTTGGTGGCATCC...CCTCTGACTCCACAGAGGAATTGCCCAGAAGCCAAGGTGAACACGGACCACTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| CDS-3UTR GCA 90 bp | CTAGGGCTCCAAGTCTTGTGGTTTAGCAGGAAGCTGGGTCAGACACCCCAGTGGCAATCTCAAATTTCATaGTGTCAGGAACCAGCGGCG | + |
|
Preference number: 4 (lower is better) Translates to: LGLQVLWFSRKLGQTPQWQSQIS*CQEPAA Trigger: CGCCGCTGGTTCCTGACAGCATGAAATTTGAGATTG...CCACTGGGGTGTCTGACCCAGCTTCCTGCTAAACCACAAGACTTGGAGCCCTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| CDS-3UTR CCA 90 bp | CACCTCAAGCACAATCCCAGGCAGAAGTTCACCAATTGCTCAGGTCATGAACACGTCACCATCATGGCCTaGGCAGCCTGGATGTCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: HLKHNPRQKFTNCSGHEHVTIMA*AAWMSA Trigger: TGCTGACATCCAGGCTGCCCAGGCCATGATGGTGAC...GTGTTCATGACCTGAGCAATTGGTGAACTTCTGCCTGGGATTGTGCTTGAGGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| 3UTR CAA 72 bp | GCCTCTGGGCATAGCCTAAAGTGGCAGAGATGGGATTaGGGCTTTTGGGTTGAGCATTCAAAGCACAGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: ASGHSLKWQRWD*GFWVEHSKHRR Trigger: CCTCCTGTGCTTTGAATGCTCAACCCAAAAGCCCAAATCCCATCTCTGCCACTTTAGGCTATGCCCAGAGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| CDS-3UTR TCA 90 bp | CACCTCAAGCACAATCCCAGGCAGAAGTTCACCAATTGCTCAGGTCATGAACACTTGGCTTTGGGCTGTTaGGCAGATCTTGGAGAGCTC | + |
|
Preference number: 4 (lower is better) Translates to: HLKHNPRQKFTNCSGHEHLALGC*ADLGEL Trigger: GAGCTCTCCAAGATCTGCTCAACAGCCCAAAGCCAA...GTGTTCATGACCTGAGCAATTGGTGAACTTCTGCCTGGGATTGTGCTTGAGGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| CDS-3UTR GCA 90 bp | GGGGAAATGTCTCTGGTTTATGACCCCCATCTACCACAGAAGAAATGGAGCATTCCTGGCAGAACACGGTaGATCTCATGCCCACCACAG | + |
|
Preference number: 4 (lower is better) Translates to: GEMSLVYDPHLPQKKWSIPGRTR*ISCPPQ Trigger: CTGTGGTGGGCATGAGATGCACCGTGTTCTGCCAGG...AATGCTCCATTTCTTCTGTGGTAGATGGGGGTCATAAACCAGAGACATTTCCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| CDS-3UTR TCA 90 bp | CTCTGCCTTCACTCCATCCAATGGCCAAAGTCATTCTACCCTCAGCAGCACCTTTCAGGCTGTATGAGTTaGACTCACTCTTGGCTTTGG | + |
|
Preference number: 4 (lower is better) Translates to: LCLHSIQWPKSFYPQQHLSGCMS*THSWLW Trigger: CCAAAGCCAAGAGTGAGTTCAACTCATACAGCCTGA...AAGGTGCTGCTGAGGGTAGAATGACTTTGGCCATTGGATGGAGTGAAGGCAGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| CDS-3UTR CCA 90 bp | CAACAGGATATGATTGGTTTGGGGACAGATCTCCAAGTAAACCAAAGGGCAGAACCGCCGTCACAATGCTaGCACCAACATAGGAACTCG | + |
|
Preference number: 4 (lower is better) Translates to: QQDMIGLGTDLQVNQRAEPPSQC*HQHRNS Trigger: CGAGTTCCTATGTTGGTGCCAGCATTGTGACGGCGG...TTCTGCCCTTTGGTTTACTTGGAGATCTGTCCCCAAACCAATCATATCCTGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| CDS-3UTR CCA 90 bp | GAAATGGAGCATTTTAAGACCGTGGAAATAAAACTGTTGGACAGGGAACCAGTCCCATCCAGAGGCCCTTaGAAAAGCCAACCGCCGTCA | + |
|
Preference number: 4 (lower is better) Translates to: EMEHFKTVEIKLLDREPVPSRGP*KSQPPS Trigger: TGACGGCGGTTGGCTTTTCCAAGGGCCTCTGGATGG...GACTGGTTCCCTGTCCAACAGTTTTATTTCCACGGTCTTAAAATGCTCCATTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| CDS-3UTR CCA 90 bp | AATTATAGGAGATGGCCTGAGAAGGGATTCTGTCGGGTTTTGCTGTTTGTTTTGATGGCCTGGGCAGCCTaGATGTCAGCAGGAAGTCCT | + |
|
Preference number: 4 (lower is better) Translates to: NYRRWPEKGFCRVLLFVLMAWAA*MSAGSP Trigger: AGGACTTCCTGCTGACATCCAGGCTGCCCAGGCCAT...CAAAACAAACAGCAAAACCCGACAGAATCCCTTCTCAGGCCATCTCCTATAATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| 3UTR CAA 72 bp | TTAGTGAGGTCAGGTGAGGGAAATAGAAAAGCTAGCTaGGCAAGCGTCCTTGGCAATGCCATCTACATGCTG | + |
|
Preference number: 4 (lower is better) Translates to: LVRSGEGNRKAS*ASVLGNAIYML Trigger: CAGCATGTAGATGGCATTGCCAAGGACGCTTGCCAAGCTAGCTTTTCTATTTCCCTCACCTGACCTCACTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| CDS-3UTR GCA 90 bp | CAACAGGATATGATTGGTTTGGGGACAGATCTCCAAGTAAACCAAAGGGCAGAAAGCCAGCGAGGACATTaGACTGGACGTCACCATCAT | + |
|
Preference number: 4 (lower is better) Translates to: QQDMIGLGTDLQVNQRAESQRGH*TGRHHH Trigger: ATGATGGTGACGTCCAGTGCAATGTCCTCGCTGGCT...TTCTGCCCTTTGGTTTACTTGGAGATCTGTCCCCAAACCAATCATATCCTGTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| CDS-3UTR CCA 90 bp | CGCATGTCAAAGGGCAGTTCTAGAAAAACTGGTTTATTGTCCTTAAGGAAACCCGCGAGGACATTGCACTaGACGTCACCATCATGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: RMSKGSSRKTGLLSLRKPARTLH*TSPSWP Trigger: AGGCCATGATGGTGACGTCCAGTGCAATGTCCTCGC...GGGTTTCCTTAAGGACAATAAACCAGTTTTTCTAGAACTGCCCTTTGACATGCG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| CDS-3UTR CCA 90 bp | CGCATGTCAAAGGGCAGTTCTAGAAAAACTGGTTTATTGTCCTTAAGGAAACCCAACTCGTTCGCCAGTTaGGAAGCAGCATGGCAATGG | + |
|
Preference number: 4 (lower is better) Translates to: RMSKGSSRKTGLLSLRKPNSFAS*EAAWQW Trigger: CCATTGCCATGCTGCTTCCCAACTGGCGAACGAGTT...GGGTTTCCTTAAGGACAATAAACCAGTTTTTCTAGAACTGCCCTTTGACATGCG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| CDS-3UTR CCA 90 bp | AATTATAGGAGATGGCCTGAGAAGGGATTCTGTCGGGTTTTGCTGTTTGTTTTGTTGGTACGATTGCCCTaGGGCGAGCAGGAAAAGCAA | + |
|
Preference number: 4 (lower is better) Translates to: NYRRWPEKGFCRVLLFVLLVRLP*GEQEKQ Trigger: TTGCTTTTCCTGCTCGCCCCAGGGCAATCGTACCAA...CAAAACAAACAGCAAAACCCGACAGAATCCCTTCTCAGGCCATCTCCTATAATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| 3UTR CAA 72 bp | GATGGCCTGAGAAGGGATTCTGTCGGGTTTTGCTGTTaGTTTTGTTTCTTTAGATCCCAGGTTGCCTCCCAT | + |
|
Preference number: 4 (lower is better) Translates to: DGLRRDSVGFCC*FCFFRSQVASH Trigger: ATGGGAGGCAACCTGGGATCTAAAGAAACAAAACAAACAGCAAAACCCGACAGAATCCCTTCTCAGGCCATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| CDS GCA 90 bp | CACACTCCATCCAGAGGCCCTTGGAAAAGCCAACCGCCGTCACAATaGTGGCACCAACATAGGAACTCGTTCGCCAGTTGGGAAGCAGCA | + |
|
Preference number: 5 (lower is better) Translates to: HTPSRGPWKSQPPSQ*WHQHRNSFASWEAA Trigger: TGCTGCTTCCCAACTGGCGAACGAGTTCCTATGTTGGTGCCAGCATTGTGACGGCGGTTGGCTTTTCCAAGGGCCTCTGGATGGAGTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054889.4 ENSMUST00000135224.2 |
||
| CDS GCA 90 bp | GCATCTCATGCCCACCACAGAGATAATACAAGCCAGCGAGGACATTaGACTGGACGTCACCATCATGGCCTGGGCAGCCTGGATGTCAGC | + |
|
Preference number: 5 (lower is better) Translates to: ASHAHHRDNTSQRGH*TGRHHHGLGSLDVS Trigger: GCTGACATCCAGGCTGCCCAGGCCATGATGGTGACGTCCAGTGCAATGTCCTCGCTGGCTTGTATTATCTCTGTGGTGGGCATGAGATGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054889.4 ENSMUST00000135224.2 |
||
| CDS CCA 90 bp | CCGCCGTCACAATGCTGGCACCAACATAGGAACTCGTTCGCCAGTTaGGAAGCAGCATGGCAATGGATGTGCCTAACAGCCCCAAAAGGC | + |
|
Preference number: 5 (lower is better) Translates to: PPSQCWHQHRNSFAS*EAAWQWMCLTAPKG Trigger: GCCTTTTGGGGCTGTTAGGCACATCCATTGCCATGCTGCTTCCCAACTGGCGAACGAGTTCCTATGTTGGTGCCAGCATTGTGACGGCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054889.4 ENSMUST00000135224.2 |
||
| CDS CCA 90 bp | ACTCCATCCAGAGGCCCTTGGAAAAGCCAACCGCCGTCACAATGCTaGCACCAACATAGGAACTCGTTCGCCAGTTGGGAAGCAGCATGG | + |
|
Preference number: 5 (lower is better) Translates to: TPSRGPWKSQPPSQC*HQHRNSFASWEAAW Trigger: CCATGCTGCTTCCCAACTGGCGAACGAGTTCCTATGTTGGTGCCAGCATTGTGACGGCGGTTGGCTTTTCCAAGGGCCTCTGGATGGAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054889.4 ENSMUST00000135224.2 |
||
| CDS TCA 90 bp | CCAGTCAGGCTGTATGAGTTGAACTCACTCTTGGCTTTGGGCTGTTaGGCAGATCTTGGAGAGCTCCTAGTGGCAAGAGGCTGGGCCTGG | + |
|
Preference number: 5 (lower is better) Translates to: PVRLYELNSLLALGC*ADLGELLVARGWAW Trigger: CCAGGCCCAGCCTCTTGCCACTAGGAGCTCTCCAAGATCTGCTCAACAGCCCAAAGCCAAGAGTGAGTTCAACTCATACAGCCTGACTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| CDS CCA 90 bp | CACCAACATAGGAACTCGTTCGCCAGTTGGGAAGCAGCATGGCAATaGATGTGCCTAACAGCCCCAAAAGGCCTAGGATGTAGCCCACCA | + |
|
Preference number: 5 (lower is better) Translates to: HQHRNSFASWEAAWQ*MCLTAPKGLGCSPP Trigger: TGGTGGGCTACATCCTAGGCCTTTTGGGGCTGTTAGGCACATCCATTGCCATGCTGCTTCCCAACTGGCGAACGAGTTCCTATGTTGGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054889.4 ENSMUST00000135224.2 |
||
| CDS CCA 90 bp | CGGCGAGTAGAAGTCCCGAAGGATGCCATGAAGATTCCAAGCAACTaGGATAAAGCCCAGGATGCCACCAAGGATGAAAAAGACTCCACC | + |
|
Preference number: 5 (lower is better) Translates to: RRVEVPKDAMKIPSN*DKAQDATKDEKDST Trigger: GGTGGAGTCTTTTTCATCCTTGGTGGCATCCTGGGCTTTATCCCAGTTGCTTGGAATCTTCATGGCATCCTTCGGGACTTCTACTCGCCG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| CDS CCA 90 bp | AAGACTCCACCCACTACAGCCACTCTGTCCTTAGCTCGAGAATCCTaGCAGAACACGGTGCATCTCATGCCCACCACAGAGATAATACAA | + |
|
Preference number: 5 (lower is better) Translates to: KTPPTTATLSLARES*QNTVHLMPTTEIIQ Trigger: TTGTATTATCTCTGTGGTGGGCATGAGATGCACCGTGTTCTGCCAGGATTCTCGAGCTAAGGACAGAGTGGCTGTAGTGGGTGGAGTCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054889.4 ENSMUST00000135224.2 |
||
| CDS-3UTR CAA 90 bp | CGCATGTCAAAGGGCAGTTCTAGAAAAACTGGTTTATTGTCCTTAAGGAAACCCGATGTAGCCCACCAGTaGGACGCCAAGGGAGGCCAT | + |
|
Preference number: 5 (lower is better) Translates to: RMSKGSSRKTGLLSLRKPDVAHQ*DAKGGH Trigger: ATGGCCTCCCTTGGCGTCCAACTGGTGGGCTACATC...GGGTTTCCTTAAGGACAATAAACCAGTTTTTCTAGAACTGCCCTTTGACATGCG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| CDS-3UTR CAA 90 bp | CGCATGTCAAAGGGCAGTTCTAGAAAAACTGGTTTATTGTCCTTAAGGAAACCCTCCATCCAGAGGCCCTaGGAAAAGCCAACCGCCGTC | + |
|
Preference number: 5 (lower is better) Translates to: RMSKGSSRKTGLLSLRKPSIQRP*EKPTAV Trigger: GACGGCGGTTGGCTTTTCCAAGGGCCTCTGGATGGA...GGGTTTCCTTAAGGACAATAAACCAGTTTTTCTAGAACTGCCCTTTGACATGCG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| CDS-3UTR CAA 90 bp | GAAATGGAGCATTTTAAGACCGTGGAAATAAAACTGTTGGACAGGGAACCAGTCGAACTCGTTCGCCAGTaGGGAAGCAGCATGGCAATG | + |
|
Preference number: 5 (lower is better) Translates to: EMEHFKTVEIKLLDREPVELVRQ*GSSMAM Trigger: CATTGCCATGCTGCTTCCCAACTGGCGAACGAGTTC...GACTGGTTCCCTGTCCAACAGTTTTATTTCCACGGTCTTAAAATGCTCCATTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| CDS-3UTR CAA 90 bp | AATTATAGGAGATGGCCTGAGAAGGGATTCTGTCGGGTTTTGCTGTTTGTTTTGCTTGGCTTTGGGCTGTaGAGCAGATCTTGGAGAGCT | + |
|
Preference number: 5 (lower is better) Translates to: NYRRWPEKGFCRVLLFVLLGFGL*SRSWRA Trigger: AGCTCTCCAAGATCTGCTCAACAGCCCAAAGCCAAG...CAAAACAAACAGCAAAACCCGACAGAATCCCTTCTCAGGCCATCTCCTATAATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| CDS-3UTR CAA 90 bp | CAACAGGATATGATTGGTTTGGGGACAGATCTCCAAGTAAACCAAAGGGCAGAAGTCAGGCTGTATGAGTaGAACTCACTCTTGGCTTTG | + |
|
Preference number: 5 (lower is better) Translates to: QQDMIGLGTDLQVNQRAEVRLYE*NSLLAL Trigger: CAAAGCCAAGAGTGAGTTCAACTCATACAGCCTGAC...TTCTGCCCTTTGGTTTACTTGGAGATCTGTCCCCAAACCAATCATATCCTGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| CDS GCA 72 bp | TCCAGAGGCCCTTGGAAAAGCCAACCGCCGTCACAATaGTGGCACCAACATAGGAACTCGTTCGCCAGTTGG | + |
|
Preference number: 6 (lower is better) Translates to: SRGPWKSQPPSQ*WHQHRNSFASW Trigger: CCAACTGGCGAACGAGTTCCTATGTTGGTGCCAGCATTGTGACGGCGGTTGGCTTTTCCAAGGGCCTCTGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054889.4 ENSMUST00000135224.2 |
||
| CDS CCA 72 bp | AGCGAGGACATTGCACTGGACGTCACCATCATGGCCTaGGCAGCCTGGATGTCAGCAGGAAGTCCTAAAAGG | + |
|
Preference number: 6 (lower is better) Translates to: SEDIALDVTIMA*AAWMSAGSPKR Trigger: CCTTTTAGGACTTCCTGCTGACATCCAGGCTGCCCAGGCCATGATGGTGACGTCCAGTGCAATGTCCTCGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054889.4 ENSMUST00000135224.2 |
||
| CDS CCA 72 bp | CCCACTACAGCCACTCTGTCCTTAGCTCGAGAATCCTaGCAGAACACGGTGCATCTCATGCCCACCACAGAG | + |
|
Preference number: 6 (lower is better) Translates to: PTTATLSLARES*QNTVHLMPTTE Trigger: CTCTGTGGTGGGCATGAGATGCACCGTGTTCTGCCAGGATTCTCGAGCTAAGGACAGAGTGGCTGTAGTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054889.4 ENSMUST00000135224.2 |
||
| CDS CCA 72 bp | AGAGGCCCTTGGAAAAGCCAACCGCCGTCACAATGCTaGCACCAACATAGGAACTCGTTCGCCAGTTGGGAA | + |
|
Preference number: 6 (lower is better) Translates to: RGPWKSQPPSQC*HQHRNSFASWE Trigger: TTCCCAACTGGCGAACGAGTTCCTATGTTGGTGCCAGCATTGTGACGGCGGTTGGCTTTTCCAAGGGCCTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054889.4 ENSMUST00000135224.2 |
||
| CDS CCA 72 bp | TGGCAAGAGGCTGGGCCTGGTAGCCATCATAGTAGTTaGTACGATTGCCCTGGGGCGAGCAGGAAAAGCAAA | + |
|
Preference number: 6 (lower is better) Translates to: WQEAGPGSHHSS*YDCPGASRKSK Trigger: TTTGCTTTTCCTGCTCGCCCCAGGGCAATCGTACCAACTACTATGATGGCTACCAGGCCCAGCCTCTTGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
||
| CDS CCA 72 bp | GAACTCACTCTTGGCTTTGGGCTGTTGAGCAGATCTTaGAGAGCTCCTAGTGGCAAGAGGCTGGGCCTGGTA | + |
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Preference number: 6 (lower is better) Translates to: ELTLGFGLLSRS*RAPSGKRLGLV Trigger: TACCAGGCCCAGCCTCTTGCCACTAGGAGCTCTCCAAGATCTGCTCAACAGCCCAAAGCCAAGAGTGAGTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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| CDS CCA 72 bp | AGGAACTCGTTCGCCAGTTGGGAAGCAGCATGGCAATaGATGTGCCTAACAGCCCCAAAAGGCCTAGGATGT | + |
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Preference number: 6 (lower is better) Translates to: RNSFASWEAAWQ*MCLTAPKGLGC Trigger: ACATCCTAGGCCTTTTGGGGCTGTTAGGCACATCCATTGCCATGCTGCTTCCCAACTGGCGAACGAGTTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054889.4 ENSMUST00000135224.2 |
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| CDS CCA 72 bp | CAATGCTGGCACCAACATAGGAACTCGTTCGCCAGTTaGGAAGCAGCATGGCAATGGATGTGCCTAACAGCC | + |
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Preference number: 6 (lower is better) Translates to: QCWHQHRNSFAS*EAAWQWMCLTA Trigger: GGCTGTTAGGCACATCCATTGCCATGCTGCTTCCCAACTGGCGAACGAGTTCCTATGTTGGTGCCAGCATTG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054889.4 ENSMUST00000135224.2 |
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| CDS CCA 72 bp | CAACATAGGAACTCGTTCGCCAGTTGGGAAGCAGCATaGCAATGGATGTGCCTAACAGCCCCAAAAGGCCTA | + |
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Preference number: 6 (lower is better) Translates to: QHRNSFASWEAA*QWMCLTAPKGL Trigger: TAGGCCTTTTGGGGCTGTTAGGCACATCCATTGCCATGCTGCTTCCCAACTGGCGAACGAGTTCCTATGTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054889.4 ENSMUST00000135224.2 |
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| CDS TCA 72 bp | CTGTATGAGTTGAACTCACTCTTGGCTTTGGGCTGTTaGGCAGATCTTGGAGAGCTCCTAGTGGCAAGAGGC | + |
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Preference number: 6 (lower is better) Translates to: LYELNSLLALGC*ADLGELLVARG Trigger: GCCTCTTGCCACTAGGAGCTCTCCAAGATCTGCTCAACAGCCCAAAGCCAAGAGTGAGTTCAACTCATACAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054889.4 |
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