RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CLDN17 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000055811

Ensembl transcript IDs: ENSMUST00000069549.3

Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp CACCCAGGGAATCACAATGTCCAAATAAGTCATTTATATTCCTACCTCAGGGGAGCAGCCCGCCTCCAATaGAGAGGACAGCAGCGGTTG +
Preference number: 4 (lower is better)
Translates to: HPGNHNVQISHLYSYLRGAARLQ*RGQQRL
Trigger: CAACCGCTGCTGTCCTCTTCATTGGAGGCGGGCTGC...TCCCCTGAGGTAGGAATATAAATGACTTATTTGGACATTGTGATTCCCTGGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS-3UTR GCA 90 bp CACCCAGGGAATCACAATGTCCAAATAAGTCATTTATATTCCTACCTCAGGGGATCTCGCTGGAGCCGGTaGACTGGAGCTGTTTCATGC +
Preference number: 4 (lower is better)
Translates to: HPGNHNVQISHLYSYLRGSRWSR*TGAVSC
Trigger: GCATGAAACAGCTCCAGTGCACCGGCTCCAGCGAGA...TCCCCTGAGGTAGGAATATAAATGACTTATTTGGACATTGTGATTCCCTGGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS-3UTR TCA 90 bp CAAATAACACCCAGGGAATCACAATGTCCAAATAAGTCATTTATATTCCTACCTCCACAGCCACACACATaGGGGCACGCGCTGCTTCCA +
Preference number: 4 (lower is better)
Translates to: QITPRESQCPNKSFIFLPPQPHT*GHALLP
Trigger: TGGAAGCAGCGCGTGCCCTCATGTGTGTGGCTGTGG...AGGTAGGAATATAAATGACTTATTTGGACATTGTGATTCCCTGGGTGTTATTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS-3UTR GCA 90 bp CAATTTATATCTCCTATAAAAGTAGTTCTGCCTGAAGTACTCACAGTTTCTGGGGAGGACAGCAGCGGTTaGCCAGCCAAGGAAGAGTGC +
Preference number: 4 (lower is better)
Translates to: QFISPIKVVLPEVLTVSGEDSSG*PAKEEC
Trigger: GCACTCTTCCTTGGCTGGGCAACCGCTGCTGTCCTC...CCCAGAAACTGTGAGTACTTCAGGCAGAACTACTTTTATAGGAGATATAAATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS-3UTR GCA 90 bp GGTGACTTTATAAAACACATGAGCATAAGCCAGGGACTGATGTTGGAAGTAAGCGGGACTGGGTATCTGTaGCACCGTTCCTTTCTGTTG +
Preference number: 4 (lower is better)
Translates to: GDFIKHMSISQGLMLEVSGTGYL*HRSFLL
Trigger: CAACAGAAAGGAACGGTGGCACAGATACCCAGTCCC...GCTTACTTCCAACATCAGTCCCTGGCTTATGCTCATGTGTTTTATAAAGTCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS-3UTR CCA 90 bp CACAGTTTCTGGGGTGACTTTATAAAACACATGAGCATAAGCCAGGGACTGATGAGCAGTCCAGGACACTaGAATCAGAACGAAGATACC +
Preference number: 4 (lower is better)
Translates to: HSFWGDFIKHMSISQGLMSSPGH*NQNEDT
Trigger: GGTATCTTCGTTCTGATTCCAGTGTCCTGGACTGCT...CATCAGTCCCTGGCTTATGCTCATGTGTTTTATAAAGTCACCCCAGAAACTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS-3UTR TCA 90 bp ATATTGAGTTCAACAAGAGTGAGCACAAATAACACCCAGGGAATCACAATGTCCAATAAAGAGCACCCCTaGGGTTCCAAGCAAGTAGGC +
Preference number: 4 (lower is better)
Translates to: ILSSTRVSTNNTQGITMSNKEHP*GSKQVG
Trigger: GCCTACTTGCTTGGAACCTCAGGGGTGCTCTTTATT...GGACATTGTGATTCCCTGGGTGTTATTTGTGCTCACTCTTGTTGAACTCAATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS-3UTR CCA 90 bp CACCCAGGGAATCACAATGTCCAAATAAGTCATTTATATTCCTACCTCAGGGGAGTGACCATAGCTTGCTaGATGCAGTTCATCCAAAGC +
Preference number: 4 (lower is better)
Translates to: HPGNHNVQISHLYSYLRGVTIAC*MQFIQS
Trigger: GCTTTGGATGAACTGCATCCAGCAAGCTATGGTCAC...TCCCCTGAGGTAGGAATATAAATGACTTATTTGGACATTGTGATTCCCTGGGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS-3UTR TCA 90 bp CAAATAACACCCAGGGAATCACAATGTCCAAATAAGTCATTTATATTCCTACCTGCTGACACTCTCCATTaGGGCAGAAGTGTTGTCCCA +
Preference number: 4 (lower is better)
Translates to: QITPRESQCPNKSFIFLPADTLH*GRSVVP
Trigger: TGGGACAACACTTCTGCCTCAATGGAGAGTGTCAGC...AGGTAGGAATATAAATGACTTATTTGGACATTGTGATTCCCTGGGTGTTATTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS-3UTR GCA 90 bp GCACAAATAACACCCAGGGAATCACAATGTCCAAATAAGTCATTTATATTCCTACCAGCCAAGGAAGAGTaGTCCTCCAAGTTCTCGCTT +
Preference number: 4 (lower is better)
Translates to: AQITPRESQCPNKSFIFLPAKEE*SSKFSL
Trigger: AAGCGAGAACTTGGAGGAGCACTCTTCCTTGGCTGG...TAGGAATATAAATGACTTATTTGGACATTGTGATTCCCTGGGTGTTATTTGTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS-3UTR GCA 90 bp CAAATAACACCCAGGGAATCACAATGTCCAAATAAGTCATTTATATTCCTACCTACCGTTCCTTTCTGTTaGAGCAGCAATATCCGCAGA +
Preference number: 4 (lower is better)
Translates to: QITPRESQCPNKSFIFLPTVPFC*SSNIRR
Trigger: TCTGCGGATATTGCTGCTGCAACAGAAAGGAACGGT...AGGTAGGAATATAAATGACTTATTTGGACATTGTGATTCCCTGGGTGTTATTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS-3UTR CCA 90 bp GCACAAATAACACCCAGGGAATCACAATGTCCAAATAAGTCATTTATATTCCTAACAGTAACATTCCTTTaGTTATCCTTCTGTGGCACG +
Preference number: 4 (lower is better)
Translates to: AQITPRESQCPNKSFIFLTVTFL*LSFCGT
Trigger: CGTGCCACAGAAGGATAACCAAAGGAATGTTACTGT...TAGGAATATAAATGACTTATTTGGACATTGTGATTCCCTGGGTGTTATTTGTGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS GCA 90 bp ATATCCGCAGAGCAGCCCGCCTCCAATGAAGAGGACAGCAGCGGTTaGCCAGCCAAGGAAGAGTGCTCCTCCAAGTTCTCGCTTCTGCCC +
Preference number: 5 (lower is better)
Translates to: ISAEQPASNEEDSSG*PAKEECSSKFSLLP
Trigger: GGGCAGAAGCGAGAACTTGGAGGAGCACTCTTCCTTGGCTGGGCAACCGCTGCTGTCCTCTTCATTGGAGGCGGGCTGCTCTGCGGATAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS TCA 90 bp CCTTTCTGTTGCAGCAGCAATATCCGCAGAGCAGCCCGCCTCCAATaGAGAGGACAGCAGCGGTTGCCCAGCCAAGGAAGAGTGCTCCTC +
Preference number: 5 (lower is better)
Translates to: PFCCSSNIRRAARLQ*RGQQRLPSQGRVLL
Trigger: GAGGAGCACTCTTCCTTGGCTGGGCAACCGCTGCTGTCCTCTTCATTGGAGGCGGGCTGCTCTGCGGATATTGCTGCTGCAACAGAAAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS GCA 90 bp GCCTCCAATGAAGAGGACAGCAGCGGTTGCCCAGCCAAGGAAGAGTaGTCCTCCAAGTTCTCGCTTCTGCCCTGCATGAACGGTTGGGTC +
Preference number: 5 (lower is better)
Translates to: ASNEEDSSGCPAKEE*SSKFSLLPCMNGWV
Trigger: GACCCAACCGTTCATGCAGGGCAGAAGCGAGAACTTGGAGGAGCACTCTTCCTTGGCTGGGCAACCGCTGCTGTCCTCTTCATTGGAGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS GCA 90 bp TGGTTATCCTTCTGTGGCACGCGGTATGCAGGGACTGGGTATCTGTaGCACCGTTCCTTTCTGTTGCAGCAGCAATATCCGCAGAGCAGC +
Preference number: 5 (lower is better)
Translates to: WLSFCGTRYAGTGYL*HRSFLLQQQYPQSS
Trigger: GCTGCTCTGCGGATATTGCTGCTGCAACAGAAAGGAACGGTGGCACAGATACCCAGTCCCTGCATACCGCGTGCCACAGAAGGATAACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS GCA 90 bp AGGCACAGTAACATTCCTTTGGTTATCCTTCTGTGGCACGCGGTATaGAGGGACTGGGTATCTGTGCCACCGTTCCTTTCTGTTGCAGCA +
Preference number: 5 (lower is better)
Translates to: RHSNIPLVILLWHAV*RDWVSVPPFLSVAA
Trigger: TGCTGCAACAGAAAGGAACGGTGGCACAGATACCCAGTCCCTGCATACCGCGTGCCACAGAAGGATAACCAAAGGAATGTTACTGTGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS CCA 90 bp AACATTCCTTTGGTTATCCTTCTGTGGCACGCGGTATGCAGGGACTaGGTATCTGTGCCACCGTTCCTTTCTGTTGCAGCAGCAATATCC +
Preference number: 5 (lower is better)
Translates to: NIPLVILLWHAVCRD*VSVPPFLSVAAAIS
Trigger: GGATATTGCTGCTGCAACAGAAAGGAACGGTGGCACAGATACCCAGTCCCTGCATACCGCGTGCCACAGAAGGATAACCAAAGGAATGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS-3UTR CAA 90 bp ATATTGAGTTCAACAAGAGTGAGCACAAATAACACCCAGGGAATCACAATGTCCCAAGGTGACCATAGCTaGCTGGATGCAGTTCATCCA +
Preference number: 5 (lower is better)
Translates to: ILSSTRVSTNNTQGITMSQGDHS*LDAVHP
Trigger: TGGATGAACTGCATCCAGCAAGCTATGGTCACCTTG...GGACATTGTGATTCCCTGGGTGTTATTTGTGCTCACTCTTGTTGAACTCAATAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS-3UTR CAA 90 bp GCACAAATAACACCCAGGGAATCACAATGTCCAAATAAGTCATTTATATTCCTACACCGTTCCTTTCTGTaGCAGCAGCAATATCCGCAG +
Preference number: 5 (lower is better)
Translates to: AQITPRESQCPNKSFIFLHRSFL*QQQYPQ
Trigger: CTGCGGATATTGCTGCTGCAACAGAAAGGAACGGTG...TAGGAATATAAATGACTTATTTGGACATTGTGATTCCCTGGGTGTTATTTGTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS-3UTR CAA 90 bp GCACAAATAACACCCAGGGAATCACAATGTCCAAATAAGTCATTTATATTCCTACACAGTAACATTCCTTaGGTTATCCTTCTGTGGCAC +
Preference number: 5 (lower is better)
Translates to: AQITPRESQCPNKSFIFLHSNIP*VILLWH
Trigger: GTGCCACAGAAGGATAACCAAAGGAATGTTACTGTG...TAGGAATATAAATGACTTATTTGGACATTGTGATTCCCTGGGTGTTATTTGTGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS GCA 72 bp GAGCAGCCCGCCTCCAATGAAGAGGACAGCAGCGGTTaGCCAGCCAAGGAAGAGTGCTCCTCCAAGTTCTCG +
Preference number: 6 (lower is better)
Translates to: EQPASNEEDSSG*PAKEECSSKFS
Trigger: CGAGAACTTGGAGGAGCACTCTTCCTTGGCTGGGCAACCGCTGCTGTCCTCTTCATTGGAGGCGGGCTGCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS TCA 72 bp TGCAGCAGCAATATCCGCAGAGCAGCCCGCCTCCAATaGAGAGGACAGCAGCGGTTGCCCAGCCAAGGAAGA +
Preference number: 6 (lower is better)
Translates to: CSSNIRRAARLQ*RGQQRLPSQGR
Trigger: TCTTCCTTGGCTGGGCAACCGCTGCTGTCCTCTTCATTGGAGGCGGGCTGCTCTGCGGATATTGCTGCTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS GCA 72 bp GGCAAGAGCCACAGCCACACACATGAGGGCACGCGCTaGTTCCAGTACCGGAGGGAGAGCCAATATGGAGTT +
Preference number: 6 (lower is better)
Translates to: GKSHSHTHEGTR*FQYRRESQYGV
Trigger: AACTCCATATTGGCTCTCCCTCCGGTACTGGAAGCAGCGCGTGCCCTCATGTGTGTGGCTGTGGCTCTTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS CAA 72 bp GCAGGGACTGGGTATCTGTGCCACCGTTCCTTTCTGTaGCAGCAGCAATATCCGCAGAGCAGCCCGCCTCCA +
Preference number: 6 (lower is better)
Translates to: AGTGYLCHRSFL*QQQYPQSSPPP
Trigger: TGGAGGCGGGCTGCTCTGCGGATATTGCTGCTGCAACAGAAAGGAACGGTGGCACAGATACCCAGTCCCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS CAA 90 bp ACGCGGTATGCAGGGACTGGGTATCTGTGCCACCGTTCCTTTCTGTaGCAGCAGCAATATCCGCAGAGCAGCCCGCCTCCAATGAAGAGG +
Preference number: 6 (lower is better)
Translates to: TRYAGTGYLCHRSFL*QQQYPQSSPPPMKR
Trigger: CCTCTTCATTGGAGGCGGGCTGCTCTGCGGATATTGCTGCTGCAACAGAAAGGAACGGTGGCACAGATACCCAGTCCCTGCATACCGCGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS GCA 72 bp GAAGAGGACAGCAGCGGTTGCCCAGCCAAGGAAGAGTaGTCCTCCAAGTTCTCGCTTCTGCCCTGCATGAAC +
Preference number: 6 (lower is better)
Translates to: EEDSSGCPAKEE*SSKFSLLPCMN
Trigger: GTTCATGCAGGGCAGAAGCGAGAACTTGGAGGAGCACTCTTCCTTGGCTGGGCAACCGCTGCTGTCCTCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS GCA 72 bp CAGGGACTGGGTATCTGTGCCACCGTTCCTTTCTGTTaGAGCAGCAATATCCGCAGAGCAGCCCGCCTCCAA +
Preference number: 6 (lower is better)
Translates to: QGLGICATVPFC*SSNIRRAARLQ
Trigger: TTGGAGGCGGGCTGCTCTGCGGATATTGCTGCTGCAACAGAAAGGAACGGTGGCACAGATACCCAGTCCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS CCA 72 bp TCTAGGCACAGTAACATTCCTTTGGTTATCCTTCTGTaGCACGCGGTATGCAGGGACTGGGTATCTGTGCCA +
Preference number: 6 (lower is better)
Translates to: SRHSNIPLVILL*HAVCRDWVSVP
Trigger: TGGCACAGATACCCAGTCCCTGCATACCGCGTGCCACAGAAGGATAACCAAAGGAATGTTACTGTGCCTAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS CAA 72 bp GCTGGTGGAAGATTTTCTAGGCACAGTAACATTCCTTaGGTTATCCTTCTGTGGCACGCGGTATGCAGGGAC +
Preference number: 6 (lower is better)
Translates to: AGGRFSRHSNIP*VILLWHAVCRD
Trigger: GTCCCTGCATACCGCGTGCCACAGAAGGATAACCAAAGGAATGTTACTGTGCCTAGAAAATCTTCCACCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS TCA 72 bp CCTCTCAAAGATAATAATGTTGCTGCCGATGAAAGCTaGCACTCTCCATTGAGGCAGAAGTGTTGTCCCAAT +
Preference number: 6 (lower is better)
Translates to: PLKDNNVAADES*HSPLRQKCCPN
Trigger: ATTGGGACAACACTTCTGCCTCAATGGAGAGTGTCAGCTTTCATCGGCAGCAACATTATTATCTTTGAGAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3
CDS CCA 72 bp GAAATCTCTGATGATGATATTAGCAGTCCAGGACACTaGAATCAGAACGAAGATACCAGTCAGAATAAAGAG +
Preference number: 6 (lower is better)
Translates to: EISDDDISSPGH*NQNEDTSQNKE
Trigger: CTCTTTATTCTGACTGGTATCTTCGTTCTGATTCCAGTGTCCTGGACTGCTAATATCATCATCAGAGATTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069549.3