Pregenerated sensors for CLDN17 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055811Ensembl transcript IDs: ENSMUST00000069549.3
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | CACCCAGGGAATCACAATGTCCAAATAAGTCATTTATATTCCTACCTCAGGGGAGCAGCCCGCCTCCAATaGAGAGGACAGCAGCGGTTG | + |
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Preference number: 4 (lower is better) Translates to: HPGNHNVQISHLYSYLRGAARLQ*RGQQRL Trigger: CAACCGCTGCTGTCCTCTTCATTGGAGGCGGGCTGC...TCCCCTGAGGTAGGAATATAAATGACTTATTTGGACATTGTGATTCCCTGGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS-3UTR GCA 90 bp | CACCCAGGGAATCACAATGTCCAAATAAGTCATTTATATTCCTACCTCAGGGGATCTCGCTGGAGCCGGTaGACTGGAGCTGTTTCATGC | + |
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Preference number: 4 (lower is better) Translates to: HPGNHNVQISHLYSYLRGSRWSR*TGAVSC Trigger: GCATGAAACAGCTCCAGTGCACCGGCTCCAGCGAGA...TCCCCTGAGGTAGGAATATAAATGACTTATTTGGACATTGTGATTCCCTGGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS-3UTR TCA 90 bp | CAAATAACACCCAGGGAATCACAATGTCCAAATAAGTCATTTATATTCCTACCTCCACAGCCACACACATaGGGGCACGCGCTGCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: QITPRESQCPNKSFIFLPPQPHT*GHALLP Trigger: TGGAAGCAGCGCGTGCCCTCATGTGTGTGGCTGTGG...AGGTAGGAATATAAATGACTTATTTGGACATTGTGATTCCCTGGGTGTTATTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS-3UTR GCA 90 bp | CAATTTATATCTCCTATAAAAGTAGTTCTGCCTGAAGTACTCACAGTTTCTGGGGAGGACAGCAGCGGTTaGCCAGCCAAGGAAGAGTGC | + |
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Preference number: 4 (lower is better) Translates to: QFISPIKVVLPEVLTVSGEDSSG*PAKEEC Trigger: GCACTCTTCCTTGGCTGGGCAACCGCTGCTGTCCTC...CCCAGAAACTGTGAGTACTTCAGGCAGAACTACTTTTATAGGAGATATAAATTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS-3UTR GCA 90 bp | GGTGACTTTATAAAACACATGAGCATAAGCCAGGGACTGATGTTGGAAGTAAGCGGGACTGGGTATCTGTaGCACCGTTCCTTTCTGTTG | + |
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Preference number: 4 (lower is better) Translates to: GDFIKHMSISQGLMLEVSGTGYL*HRSFLL Trigger: CAACAGAAAGGAACGGTGGCACAGATACCCAGTCCC...GCTTACTTCCAACATCAGTCCCTGGCTTATGCTCATGTGTTTTATAAAGTCACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS-3UTR CCA 90 bp | CACAGTTTCTGGGGTGACTTTATAAAACACATGAGCATAAGCCAGGGACTGATGAGCAGTCCAGGACACTaGAATCAGAACGAAGATACC | + |
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Preference number: 4 (lower is better) Translates to: HSFWGDFIKHMSISQGLMSSPGH*NQNEDT Trigger: GGTATCTTCGTTCTGATTCCAGTGTCCTGGACTGCT...CATCAGTCCCTGGCTTATGCTCATGTGTTTTATAAAGTCACCCCAGAAACTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS-3UTR TCA 90 bp | ATATTGAGTTCAACAAGAGTGAGCACAAATAACACCCAGGGAATCACAATGTCCAATAAAGAGCACCCCTaGGGTTCCAAGCAAGTAGGC | + |
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Preference number: 4 (lower is better) Translates to: ILSSTRVSTNNTQGITMSNKEHP*GSKQVG Trigger: GCCTACTTGCTTGGAACCTCAGGGGTGCTCTTTATT...GGACATTGTGATTCCCTGGGTGTTATTTGTGCTCACTCTTGTTGAACTCAATAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS-3UTR CCA 90 bp | CACCCAGGGAATCACAATGTCCAAATAAGTCATTTATATTCCTACCTCAGGGGAGTGACCATAGCTTGCTaGATGCAGTTCATCCAAAGC | + |
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Preference number: 4 (lower is better) Translates to: HPGNHNVQISHLYSYLRGVTIAC*MQFIQS Trigger: GCTTTGGATGAACTGCATCCAGCAAGCTATGGTCAC...TCCCCTGAGGTAGGAATATAAATGACTTATTTGGACATTGTGATTCCCTGGGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS-3UTR TCA 90 bp | CAAATAACACCCAGGGAATCACAATGTCCAAATAAGTCATTTATATTCCTACCTGCTGACACTCTCCATTaGGGCAGAAGTGTTGTCCCA | + |
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Preference number: 4 (lower is better) Translates to: QITPRESQCPNKSFIFLPADTLH*GRSVVP Trigger: TGGGACAACACTTCTGCCTCAATGGAGAGTGTCAGC...AGGTAGGAATATAAATGACTTATTTGGACATTGTGATTCCCTGGGTGTTATTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS-3UTR GCA 90 bp | GCACAAATAACACCCAGGGAATCACAATGTCCAAATAAGTCATTTATATTCCTACCAGCCAAGGAAGAGTaGTCCTCCAAGTTCTCGCTT | + |
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Preference number: 4 (lower is better) Translates to: AQITPRESQCPNKSFIFLPAKEE*SSKFSL Trigger: AAGCGAGAACTTGGAGGAGCACTCTTCCTTGGCTGG...TAGGAATATAAATGACTTATTTGGACATTGTGATTCCCTGGGTGTTATTTGTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS-3UTR GCA 90 bp | CAAATAACACCCAGGGAATCACAATGTCCAAATAAGTCATTTATATTCCTACCTACCGTTCCTTTCTGTTaGAGCAGCAATATCCGCAGA | + |
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Preference number: 4 (lower is better) Translates to: QITPRESQCPNKSFIFLPTVPFC*SSNIRR Trigger: TCTGCGGATATTGCTGCTGCAACAGAAAGGAACGGT...AGGTAGGAATATAAATGACTTATTTGGACATTGTGATTCCCTGGGTGTTATTTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS-3UTR CCA 90 bp | GCACAAATAACACCCAGGGAATCACAATGTCCAAATAAGTCATTTATATTCCTAACAGTAACATTCCTTTaGTTATCCTTCTGTGGCACG | + |
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Preference number: 4 (lower is better) Translates to: AQITPRESQCPNKSFIFLTVTFL*LSFCGT Trigger: CGTGCCACAGAAGGATAACCAAAGGAATGTTACTGT...TAGGAATATAAATGACTTATTTGGACATTGTGATTCCCTGGGTGTTATTTGTGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS GCA 90 bp | ATATCCGCAGAGCAGCCCGCCTCCAATGAAGAGGACAGCAGCGGTTaGCCAGCCAAGGAAGAGTGCTCCTCCAAGTTCTCGCTTCTGCCC | + |
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Preference number: 5 (lower is better) Translates to: ISAEQPASNEEDSSG*PAKEECSSKFSLLP Trigger: GGGCAGAAGCGAGAACTTGGAGGAGCACTCTTCCTTGGCTGGGCAACCGCTGCTGTCCTCTTCATTGGAGGCGGGCTGCTCTGCGGATAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS TCA 90 bp | CCTTTCTGTTGCAGCAGCAATATCCGCAGAGCAGCCCGCCTCCAATaGAGAGGACAGCAGCGGTTGCCCAGCCAAGGAAGAGTGCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: PFCCSSNIRRAARLQ*RGQQRLPSQGRVLL Trigger: GAGGAGCACTCTTCCTTGGCTGGGCAACCGCTGCTGTCCTCTTCATTGGAGGCGGGCTGCTCTGCGGATATTGCTGCTGCAACAGAAAGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS GCA 90 bp | GCCTCCAATGAAGAGGACAGCAGCGGTTGCCCAGCCAAGGAAGAGTaGTCCTCCAAGTTCTCGCTTCTGCCCTGCATGAACGGTTGGGTC | + |
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Preference number: 5 (lower is better) Translates to: ASNEEDSSGCPAKEE*SSKFSLLPCMNGWV Trigger: GACCCAACCGTTCATGCAGGGCAGAAGCGAGAACTTGGAGGAGCACTCTTCCTTGGCTGGGCAACCGCTGCTGTCCTCTTCATTGGAGGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS GCA 90 bp | TGGTTATCCTTCTGTGGCACGCGGTATGCAGGGACTGGGTATCTGTaGCACCGTTCCTTTCTGTTGCAGCAGCAATATCCGCAGAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: WLSFCGTRYAGTGYL*HRSFLLQQQYPQSS Trigger: GCTGCTCTGCGGATATTGCTGCTGCAACAGAAAGGAACGGTGGCACAGATACCCAGTCCCTGCATACCGCGTGCCACAGAAGGATAACCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS GCA 90 bp | AGGCACAGTAACATTCCTTTGGTTATCCTTCTGTGGCACGCGGTATaGAGGGACTGGGTATCTGTGCCACCGTTCCTTTCTGTTGCAGCA | + |
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Preference number: 5 (lower is better) Translates to: RHSNIPLVILLWHAV*RDWVSVPPFLSVAA Trigger: TGCTGCAACAGAAAGGAACGGTGGCACAGATACCCAGTCCCTGCATACCGCGTGCCACAGAAGGATAACCAAAGGAATGTTACTGTGCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS CCA 90 bp | AACATTCCTTTGGTTATCCTTCTGTGGCACGCGGTATGCAGGGACTaGGTATCTGTGCCACCGTTCCTTTCTGTTGCAGCAGCAATATCC | + |
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Preference number: 5 (lower is better) Translates to: NIPLVILLWHAVCRD*VSVPPFLSVAAAIS Trigger: GGATATTGCTGCTGCAACAGAAAGGAACGGTGGCACAGATACCCAGTCCCTGCATACCGCGTGCCACAGAAGGATAACCAAAGGAATGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS-3UTR CAA 90 bp | ATATTGAGTTCAACAAGAGTGAGCACAAATAACACCCAGGGAATCACAATGTCCCAAGGTGACCATAGCTaGCTGGATGCAGTTCATCCA | + |
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Preference number: 5 (lower is better) Translates to: ILSSTRVSTNNTQGITMSQGDHS*LDAVHP Trigger: TGGATGAACTGCATCCAGCAAGCTATGGTCACCTTG...GGACATTGTGATTCCCTGGGTGTTATTTGTGCTCACTCTTGTTGAACTCAATAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS-3UTR CAA 90 bp | GCACAAATAACACCCAGGGAATCACAATGTCCAAATAAGTCATTTATATTCCTACACCGTTCCTTTCTGTaGCAGCAGCAATATCCGCAG | + |
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Preference number: 5 (lower is better) Translates to: AQITPRESQCPNKSFIFLHRSFL*QQQYPQ Trigger: CTGCGGATATTGCTGCTGCAACAGAAAGGAACGGTG...TAGGAATATAAATGACTTATTTGGACATTGTGATTCCCTGGGTGTTATTTGTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS-3UTR CAA 90 bp | GCACAAATAACACCCAGGGAATCACAATGTCCAAATAAGTCATTTATATTCCTACACAGTAACATTCCTTaGGTTATCCTTCTGTGGCAC | + |
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Preference number: 5 (lower is better) Translates to: AQITPRESQCPNKSFIFLHSNIP*VILLWH Trigger: GTGCCACAGAAGGATAACCAAAGGAATGTTACTGTG...TAGGAATATAAATGACTTATTTGGACATTGTGATTCCCTGGGTGTTATTTGTGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS GCA 72 bp | GAGCAGCCCGCCTCCAATGAAGAGGACAGCAGCGGTTaGCCAGCCAAGGAAGAGTGCTCCTCCAAGTTCTCG | + |
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Preference number: 6 (lower is better) Translates to: EQPASNEEDSSG*PAKEECSSKFS Trigger: CGAGAACTTGGAGGAGCACTCTTCCTTGGCTGGGCAACCGCTGCTGTCCTCTTCATTGGAGGCGGGCTGCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS TCA 72 bp | TGCAGCAGCAATATCCGCAGAGCAGCCCGCCTCCAATaGAGAGGACAGCAGCGGTTGCCCAGCCAAGGAAGA | + |
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Preference number: 6 (lower is better) Translates to: CSSNIRRAARLQ*RGQQRLPSQGR Trigger: TCTTCCTTGGCTGGGCAACCGCTGCTGTCCTCTTCATTGGAGGCGGGCTGCTCTGCGGATATTGCTGCTGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS GCA 72 bp | GGCAAGAGCCACAGCCACACACATGAGGGCACGCGCTaGTTCCAGTACCGGAGGGAGAGCCAATATGGAGTT | + |
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Preference number: 6 (lower is better) Translates to: GKSHSHTHEGTR*FQYRRESQYGV Trigger: AACTCCATATTGGCTCTCCCTCCGGTACTGGAAGCAGCGCGTGCCCTCATGTGTGTGGCTGTGGCTCTTGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS CAA 72 bp | GCAGGGACTGGGTATCTGTGCCACCGTTCCTTTCTGTaGCAGCAGCAATATCCGCAGAGCAGCCCGCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: AGTGYLCHRSFL*QQQYPQSSPPP Trigger: TGGAGGCGGGCTGCTCTGCGGATATTGCTGCTGCAACAGAAAGGAACGGTGGCACAGATACCCAGTCCCTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS CAA 90 bp | ACGCGGTATGCAGGGACTGGGTATCTGTGCCACCGTTCCTTTCTGTaGCAGCAGCAATATCCGCAGAGCAGCCCGCCTCCAATGAAGAGG | + |
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Preference number: 6 (lower is better) Translates to: TRYAGTGYLCHRSFL*QQQYPQSSPPPMKR Trigger: CCTCTTCATTGGAGGCGGGCTGCTCTGCGGATATTGCTGCTGCAACAGAAAGGAACGGTGGCACAGATACCCAGTCCCTGCATACCGCGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS GCA 72 bp | GAAGAGGACAGCAGCGGTTGCCCAGCCAAGGAAGAGTaGTCCTCCAAGTTCTCGCTTCTGCCCTGCATGAAC | + |
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Preference number: 6 (lower is better) Translates to: EEDSSGCPAKEE*SSKFSLLPCMN Trigger: GTTCATGCAGGGCAGAAGCGAGAACTTGGAGGAGCACTCTTCCTTGGCTGGGCAACCGCTGCTGTCCTCTTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS GCA 72 bp | CAGGGACTGGGTATCTGTGCCACCGTTCCTTTCTGTTaGAGCAGCAATATCCGCAGAGCAGCCCGCCTCCAA | + |
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Preference number: 6 (lower is better) Translates to: QGLGICATVPFC*SSNIRRAARLQ Trigger: TTGGAGGCGGGCTGCTCTGCGGATATTGCTGCTGCAACAGAAAGGAACGGTGGCACAGATACCCAGTCCCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS CCA 72 bp | TCTAGGCACAGTAACATTCCTTTGGTTATCCTTCTGTaGCACGCGGTATGCAGGGACTGGGTATCTGTGCCA | + |
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Preference number: 6 (lower is better) Translates to: SRHSNIPLVILL*HAVCRDWVSVP Trigger: TGGCACAGATACCCAGTCCCTGCATACCGCGTGCCACAGAAGGATAACCAAAGGAATGTTACTGTGCCTAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS CAA 72 bp | GCTGGTGGAAGATTTTCTAGGCACAGTAACATTCCTTaGGTTATCCTTCTGTGGCACGCGGTATGCAGGGAC | + |
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Preference number: 6 (lower is better) Translates to: AGGRFSRHSNIP*VILLWHAVCRD Trigger: GTCCCTGCATACCGCGTGCCACAGAAGGATAACCAAAGGAATGTTACTGTGCCTAGAAAATCTTCCACCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS TCA 72 bp | CCTCTCAAAGATAATAATGTTGCTGCCGATGAAAGCTaGCACTCTCCATTGAGGCAGAAGTGTTGTCCCAAT | + |
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Preference number: 6 (lower is better) Translates to: PLKDNNVAADES*HSPLRQKCCPN Trigger: ATTGGGACAACACTTCTGCCTCAATGGAGAGTGTCAGCTTTCATCGGCAGCAACATTATTATCTTTGAGAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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| CDS CCA 72 bp | GAAATCTCTGATGATGATATTAGCAGTCCAGGACACTaGAATCAGAACGAAGATACCAGTCAGAATAAAGAG | + |
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Preference number: 6 (lower is better) Translates to: EISDDDISSPGH*NQNEDTSQNKE Trigger: CTCTTTATTCTGACTGGTATCTTCGTTCTGATTCCAGTGTCCTGGACTGCTAATATCATCATCAGAGATTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069549.3 |
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