Pregenerated sensors for CLDN16 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038148

Ensembl transcript IDs: ENSMUST00000115302.2, ENSMUST00000161053.8

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	TGTCCGAGGGGCCTTGTAGGACTTGGCCATGGACACACCTGCAGTTaGATAGGGCTTCCTCATGGCATAAGGGTAGTTCCTCTCAGGCCC	+
Preference number: 5 (lower is better) Translates to: CPRGLVGLGHGHTCS*IGLPHGIRVVPLRP Trigger: GGGCCTGAGAGGAACTACCCTTATGCCATGAGGAAGCCCTATTCAACTGCAGGTGTGTCCATGGCCAAGTCCTACAAGGCCCCTCGGACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115302.2 ENSMUST00000161053.8
CDS CCA 90 bp	CCTCCAGGGAGTCATCAGCGTTCACCATCCAACAGTCTGTCCAGGTaGCCACGATCAAAAACCCAGTGGAGAATATGGCCAAGAAGCAGG	+
Preference number: 5 (lower is better) Translates to: PPGSHQRSPSNSLSR*PRSKTQWRIWPRSR Trigger: CCTGCTTCTTGGCCATATTCTCCACTGGGTTTTTGATCGTGGCCACCTGGACAGACTGTTGGATGGTGAACGCTGATGACTCCCTGGAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000115302.2 ENSMUST00000161053.8
CDS CCA 90 bp	ACATTTTGGCTGTCTCTGTCCGAGGGGCCTTGTAGGACTTGGCCATaGACACACCTGCAGTTGAATAGGGCTTCCTCATGGCATAAGGGT	+
Preference number: 5 (lower is better) Translates to: TFWLSLSEGPCRTWP*THLQLNRASSWHKG Trigger: ACCCTTATGCCATGAGGAAGCCCTATTCAACTGCAGGTGTGTCCATGGCCAAGTCCTACAAGGCCCCTCGGACAGAGACAGCCAAAATGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115302.2 ENSMUST00000161053.8
CDS CCA 90 bp	CAGCATACATTTTGGCTGTCTCTGTCCGAGGGGCCTTGTAGGACTTaGCCATGGACACACCTGCAGTTGAATAGGGCTTCCTCATGGCAT	+
Preference number: 5 (lower is better) Translates to: QHTFWLSLSEGPCRT*PWTHLQLNRASSWH Trigger: ATGCCATGAGGAAGCCCTATTCAACTGCAGGTGTGTCCATGGCCAAGTCCTACAAGGCCCCTCGGACAGAGACAGCCAAAATGTATGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115302.2 ENSMUST00000161053.8
CDS CCA 90 bp	TCACCATCCAACAGTCTGTCCAGGTGGCCACGATCAAAAACCCAGTaGAGAATATGGCCAAGAAGCAGGCAGCGTACTGAAGAAGATCCT	+
Preference number: 5 (lower is better) Translates to: SPSNSLSRWPRSKTQ*RIWPRSRQRTEEDP Trigger: AGGATCTTCTTCAGTACGCTGCCTGCTTCTTGGCCATATTCTCCACTGGGTTTTTGATCGTGGCCACCTGGACAGACTGTTGGATGGTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000115302.2 ENSMUST00000161053.8
CDS CCA 90 bp	TCAGTGCTCGAGTTACCACCAGCTTCAAGGGATGTTCTGCATATATaGAGTCGTACTCATCGCAGGTTCGAATCCCATCAAAAGCGTTTG	+
Preference number: 5 (lower is better) Translates to: SVLELPPASRDVLHI*SRTHRRFESHQKRL Trigger: CAAACGCTTTTGATGGGATTCGAACCTGCGATGAGTACGACTCCATATATGCAGAACATCCCTTGAAGCTGGTGGTAACTCGAGCACTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115302.2 ENSMUST00000161053.8
CDS CAA 90 bp	CTGTCCGAGGGGCCTTGTAGGACTTGGCCATGGACACACCTGCAGTaGAATAGGGCTTCCTCATGGCATAAGGGTAGTTCCTCTCAGGCC	+
Preference number: 6 (lower is better) Translates to: LSEGPCRTWPWTHLQ*NRASSWHKGSSSQA Trigger: GGCCTGAGAGGAACTACCCTTATGCCATGAGGAAGCCCTATTCAACTGCAGGTGTGTCCATGGCCAAGTCCTACAAGGCCCCTCGGACAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115302.2 ENSMUST00000161053.8
CDS CCA 72 bp	CTGTCTCTGTCCGAGGGGCCTTGTAGGACTTGGCCATaGACACACCTGCAGTTGAATAGGGCTTCCTCATGG	+
Preference number: 6 (lower is better) Translates to: LSLSEGPCRTWP*THLQLNRASSW Trigger: CCATGAGGAAGCCCTATTCAACTGCAGGTGTGTCCATGGCCAAGTCCTACAAGGCCCCTCGGACAGAGACAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115302.2 ENSMUST00000161053.8
CDS TCA 72 bp	GGCCTTGTAGGACTTGGCCATGGACACACCTGCAGTTaGATAGGGCTTCCTCATGGCATAAGGGTAGTTCCT	+
Preference number: 6 (lower is better) Translates to: GLVGLGHGHTCS*IGLPHGIRVVP Trigger: AGGAACTACCCTTATGCCATGAGGAAGCCCTATTCAACTGCAGGTGTGTCCATGGCCAAGTCCTACAAGGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115302.2 ENSMUST00000161053.8
CDS CCA 72 bp	TCCAGGTGGCCACGATCAAAAACCCAGTGGAGAATATaGCCAAGAAGCAGGCAGCGTACTGAAGAAGATCCT	+
Preference number: 6 (lower is better) Translates to: SRWPRSKTQWRI*PRSRQRTEEDP Trigger: AGGATCTTCTTCAGTACGCTGCCTGCTTCTTGGCCATATTCTCCACTGGGTTTTTGATCGTGGCCACCTGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000115302.2 ENSMUST00000161053.8
CDS CCA 72 bp	AGTCATCAGCGTTCACCATCCAACAGTCTGTCCAGGTaGCCACGATCAAAAACCCAGTGGAGAATATGGCCA	+
Preference number: 6 (lower is better) Translates to: SHQRSPSNSLSR*PRSKTQWRIWP Trigger: TGGCCATATTCTCCACTGGGTTTTTGATCGTGGCCACCTGGACAGACTGTTGGATGGTGAACGCTGATGACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000115302.2 ENSMUST00000161053.8
CDS GCA 72 bp	CAGTGCTCGAGTTACCACCAGCTTCAAGGGATGTTCTaGATATATGGAGTCGTACTCATCGCAGGTTCGAAT	+
Preference number: 6 (lower is better) Translates to: QCSSYHQLQGMF*IYGVVLIAGSN Trigger: ATTCGAACCTGCGATGAGTACGACTCCATATATGCAGAACATCCCTTGAAGCTGGTGGTAACTCGAGCACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115302.2 ENSMUST00000161053.8
CDS CCA 72 bp	GAGTTACCACCAGCTTCAAGGGATGTTCTGCATATATaGAGTCGTACTCATCGCAGGTTCGAATCCCATCAA	+
Preference number: 6 (lower is better) Translates to: ELPPASRDVLHI*SRTHRRFESHQ Trigger: TTGATGGGATTCGAACCTGCGATGAGTACGACTCCATATATGCAGAACATCCCTTGAAGCTGGTGGTAACTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115302.2 ENSMUST00000161053.8

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