Pregenerated sensors for CLDN13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000008843Ensembl transcript IDs: ENSMUST00000008987.5
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TATTGGGGTCCCTTAGATAGGAGACTCGGGCAGCTTCAGCACCAAGAAGCCCACTGGAGAGAGGCCTCTTaGGGAAGTTTTCCCCTCCAG | + |
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Preference number: 2 (lower is better) Translates to: YWGPLDRRLGQLQHQEAHWREAS*GSFPLQ Trigger: CTGGAGGGGAAAACTTCCTCAAGAGGCCTCTCTCCA...GTGGGCTTCTTGGTGCTGAAGCTGCCCGAGTCTCCTATCTAAGGGACCCCAATA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000008987.5 |
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| 3UTR-3UTR CAA 90 bp | TATTGGGGTCCCTTAGATAGGAGACTCGGGCAGCTTCAGCACCAAGAAGCCCACCTGGAGAGAGGCCTCTaGAGGAAGTTTTCCCCTCCA | + |
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Preference number: 3 (lower is better) Translates to: YWGPLDRRLGQLQHQEAHLERGL*RKFSPP Trigger: TGGAGGGGAAAACTTCCTCAAGAGGCCTCTCTCCAG...GTGGGCTTCTTGGTGCTGAAGCTGCCCGAGTCTCCTATCTAAGGGACCCCAATA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000008987.5 |
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| CDS-3UTR CCA 90 bp | GCTTCAGCACCAAGAAGCCCACCTCAGCATGGTGCTGACACAGCTAGCCGCATCGCACGCAGCTCACAATaGCACCCACCCAACCCAGTG | + |
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Preference number: 4 (lower is better) Translates to: ASAPRSPPQHGADTASRIARSSQ*HPPNPV Trigger: CACTGGGTTGGGTGGGTGCCATTGTGAGCTGCGTGC...GATGCGGCTAGCTGTGTCAGCACCATGCTGAGGTGGGCTTCTTGGTGCTGAAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008987.5 |
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| CDS-3UTR TCA 90 bp | TATTGGGGTCCCTTAGATAGGAGACTCGGGCAGCTTCAGCACCAAGAAGCCCACCCAGGCCAGGGAGAGTaGAGAGCCCATCTGTACTTT | + |
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Preference number: 4 (lower is better) Translates to: YWGPLDRRLGQLQHQEAHPGQGE*RAHLYF Trigger: AAAGTACAGATGGGCTCTTCACTCTCCCTGGCCTGG...GTGGGCTTCTTGGTGCTGAAGCTGCCCGAGTCTCCTATCTAAGGGACCCCAATA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008987.5 |
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| CDS-3UTR CCA 90 bp | GGGCAGCTTCAGCACCAAGAAGCCCACCTCAGCATGGTGCTGACACAGCTAGCCGTCTGTCTCATCATCTaGAAAGGTCACCCTCCAAAC | + |
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Preference number: 4 (lower is better) Translates to: GQLQHQEAHLSMVLTQLAVCLII*KGHPPN Trigger: GTTTGGAGGGTGACCTTTCCAGATGATGAGACAGAC...GGCTAGCTGTGTCAGCACCATGCTGAGGTGGGCTTCTTGGTGCTGAAGCTGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008987.5 |
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| CDS-3UTR TCA 90 bp | TATTGGGGTCCCTTAGATAGGAGACTCGGGCAGCTTCAGCACCAAGAAGCCCACACCCACCCAACCCAGTaGAGTCACAGAGAAGCTGAT | + |
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Preference number: 4 (lower is better) Translates to: YWGPLDRRLGQLQHQEAHTHPTQ*SHREAD Trigger: ATCAGCTTCTCTGTGACTTCACTGGGTTGGGTGGGT...GTGGGCTTCTTGGTGCTGAAGCTGCCCGAGTCTCCTATCTAAGGGACCCCAATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008987.5 |
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| CDS-3UTR CCA 90 bp | TATTGGGGTCCCTTAGATAGGAGACTCGGGCAGCTTCAGCACCAAGAAGCCCACCTGTTTTCCCGAACCTaGCATATGTGCCACAGACCC | + |
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Preference number: 4 (lower is better) Translates to: YWGPLDRRLGQLQHQEAHLFSRT*HMCHRP Trigger: GGGTCTGTGGCACATATGCCAGGTTCGGGAAAACAG...GTGGGCTTCTTGGTGCTGAAGCTGCCCGAGTCTCCTATCTAAGGGACCCCAATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008987.5 |
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| CDS-3UTR CCA 90 bp | GGGCAGCTTCAGCACCAAGAAGCCCACCTCAGCATGGTGCTGACACAGCTAGCCAAAGTCTCTGCATACTaGGATGTTGACACAGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: GQLQHQEAHLSMVLTQLAKVSAY*DVDTEQ Trigger: CTGCTCTGTGTCAACATCCCAGTATGCAGAGACTTT...GGCTAGCTGTGTCAGCACCATGCTGAGGTGGGCTTCTTGGTGCTGAAGCTGCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008987.5 |
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| CDS-3UTR CCA 90 bp | CAGCTTCAGCACCAAGAAGCCCACCTCAGCATGGTGCTGACACAGCTAGCCGCACGAGAAGCCAAGCAATaGGTTAAAGAAGCCATGGAT | + |
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Preference number: 4 (lower is better) Translates to: QLQHQEAHLSMVLTQLAAREAKQ*VKEAMD Trigger: ATCCATGGCTTCTTTAACCCATTGCTTGGCTTCTCG...TGCGGCTAGCTGTGTCAGCACCATGCTGAGGTGGGCTTCTTGGTGCTGAAGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008987.5 |
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| CDS-3UTR CCA 90 bp | CAGCTTCAGCACCAAGAAGCCCACCTCAGCATGGTGCTGACACAGCTAGCCGCAGGGTTAAAGAAGCCATaGATGATGTTGTGTGTTACC | + |
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Preference number: 4 (lower is better) Translates to: QLQHQEAHLSMVLTQLAAGLKKP*MMLCVT Trigger: GGTAACACACAACATCATCCATGGCTTCTTTAACCC...TGCGGCTAGCTGTGTCAGCACCATGCTGAGGTGGGCTTCTTGGTGCTGAAGCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008987.5 |
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| CDS CCA 90 bp | CCACAGACCCTCCCAAATGGTGGCATCTGGGTCTGTCTCATCATCTaGAAAGGTCACCCTCCAAACGGGCAGCACGCAGCTCACAATGGC | + |
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Preference number: 5 (lower is better) Translates to: PQTLPNGGIWVCLII*KGHPPNGQHAAHNG Trigger: GCCATTGTGAGCTGCGTGCTGCCCGTTTGGAGGGTGACCTTTCCAGATGATGAGACAGACCCAGATGCCACCATTTGGGAGGGTCTGTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008987.5 |
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| CDS TCA 90 bp | CCAAACGGGCAGCACGCAGCTCACAATGGCACCCACCCAACCCAGTaGAGTCACAGAGAAGCTGATGGCCTCTTGTTTGCTGACGACCAT | + |
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Preference number: 5 (lower is better) Translates to: PNGQHAAHNGTHPTQ*SHREADGLLFADDH Trigger: ATGGTCGTCAGCAAACAAGAGGCCATCAGCTTCTCTGTGACTTCACTGGGTTGGGTGGGTGCCATTGTGAGCTGCGTGCTGCCCGTTTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008987.5 |
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| CDS-3UTR CAA 90 bp | TTAGATAGGAGACTCGGGCAGCTTCAGCACCAAGAAGCCCACCTCAGCATGGTGCTGCATACTGGGATGTaGACACAGAGCAGGATGCCT | + |
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Preference number: 5 (lower is better) Translates to: LDRRLGQLQHQEAHLSMVLHTGM*TQSRMP Trigger: AGGCATCCTGCTCTGTGTCAACATCCCAGTATGCAG...CACCATGCTGAGGTGGGCTTCTTGGTGCTGAAGCTGCCCGAGTCTCCTATCTAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008987.5 |
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| CDS GCA 90 bp | TACAGTGTACACTGTATCCACCTGTTTTCCCGAACCTGGCATATGTaGCACAGACCCTCCCAAATGGTGGCATCTGGGTCTGTCTCATCA | + |
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Preference number: 5 (lower is better) Translates to: YSVHCIHLFSRTWHM*HRPSQMVASGSVSS Trigger: TGATGAGACAGACCCAGATGCCACCATTTGGGAGGGTCTGTGGCACATATGCCAGGTTCGGGAAAACAGGTGGATACAGTGTACACTGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008987.5 |
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| CDS CCA 90 bp | ATCTGTACTTTCTTCGAGAAGCCAAGCAATGGGTTAAAGAAGCCATaGATGATGTTGTGTGTTACCCAGGACAGGGGTACCAGCATCAGA | + |
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Preference number: 5 (lower is better) Translates to: ICTFFEKPSNGLKKP*MMLCVTQDRGTSIR Trigger: TCTGATGCTGGTACCCCTGTCCTGGGTAACACACAACATCATCCATGGCTTCTTTAACCCATTGCTTGGCTTCTCGAAGAAAGTACAGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008987.5 |
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| CDS CCA 72 bp | AGAGCAGGATGCCTCCCAGCAACAGCAGCAGGGAGCTaGTCCAGGCCAGGGAGAGTGAAGAGCCCATCTGTA | + |
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Preference number: 6 (lower is better) Translates to: RAGCLPATAAGS*SRPGRVKSPSV Trigger: TACAGATGGGCTCTTCACTCTCCCTGGCCTGGACCAGCTCCCTGCTGCTGTTGCTGGGAGGCATCCTGCTCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008987.5 |
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| CDS CCA 72 bp | AGGTCACCCTCCAAACGGGCAGCACGCAGCTCACAATaGCACCCACCCAACCCAGTGAAGTCACAGAGAAGC | + |
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Preference number: 6 (lower is better) Translates to: RSPSKRAARSSQ*HPPNPVKSQRS Trigger: GCTTCTCTGTGACTTCACTGGGTTGGGTGGGTGCCATTGTGAGCTGCGTGCTGCCCGTTTGGAGGGTGACCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008987.5 |
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| CDS CCA 72 bp | CTCCCAAATGGTGGCATCTGGGTCTGTCTCATCATCTaGAAAGGTCACCCTCCAAACGGGCAGCACGCAGCT | + |
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Preference number: 6 (lower is better) Translates to: LPNGGIWVCLII*KGHPPNGQHAA Trigger: AGCTGCGTGCTGCCCGTTTGGAGGGTGACCTTTCCAGATGATGAGACAGACCCAGATGCCACCATTTGGGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008987.5 |
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| CDS TCA 72 bp | CAGCACGCAGCTCACAATGGCACCCACCCAACCCAGTaGAGTCACAGAGAAGCTGATGGCCTCTTGTTTGCT | + |
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Preference number: 6 (lower is better) Translates to: QHAAHNGTHPTQ*SHREADGLLFA Trigger: AGCAAACAAGAGGCCATCAGCTTCTCTGTGACTTCACTGGGTTGGGTGGGTGCCATTGTGAGCTGCGTGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008987.5 |
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| CDS CCA 72 bp | AGGGGTCTCAATGCAACGGGGAAAGTCTCTGCATACTaGGATGTTGACACAGAGCAGGATGCCTCCCAGCAA | + |
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Preference number: 6 (lower is better) Translates to: RGLNATGKVSAY*DVDTEQDASQQ Trigger: TTGCTGGGAGGCATCCTGCTCTGTGTCAACATCCCAGTATGCAGAGACTTTCCCCGTTGCATTGAGACCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008987.5 |
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| CDS CCA 72 bp | GAACCTGGCATATGTGCCACAGACCCTCCCAAATGGTaGCATCTGGGTCTGTCTCATCATCTGGAAAGGTCA | + |
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Preference number: 6 (lower is better) Translates to: EPGICATDPPKW*HLGLSHHLERS Trigger: TGACCTTTCCAGATGATGAGACAGACCCAGATGCCACCATTTGGGAGGGTCTGTGGCACATATGCCAGGTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008987.5 |
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| CDS CCA 72 bp | TACAGTGTACACTGTATCCACCTGTTTTCCCGAACCTaGCATATGTGCCACAGACCCTCCCAAATGGTGGCA | + |
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Preference number: 6 (lower is better) Translates to: YSVHCIHLFSRT*HMCHRPSQMVA Trigger: TGCCACCATTTGGGAGGGTCTGTGGCACATATGCCAGGTTCGGGAAAACAGGTGGATACAGTGTACACTGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008987.5 |
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| CDS CAA 90 bp | TTCTTCGAGAAGCCAAGCAATGGGTTAAAGAAGCCATGGATGATGTaGTGTGTTACCCAGGACAGGGGTACCAGCATCAGAAGGCCAACA | + |
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Preference number: 6 (lower is better) Translates to: FFEKPSNGLKKPWMM*CVTQDRGTSIRRPT Trigger: TGTTGGCCTTCTGATGCTGGTACCCCTGTCCTGGGTAACACACAACATCATCCATGGCTTCTTTAACCCATTGCTTGGCTTCTCGAAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008987.5 |
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| CDS CCA 72 bp | TTCTTCGAGAAGCCAAGCAATGGGTTAAAGAAGCCATaGATGATGTTGTGTGTTACCCAGGACAGGGGTACC | + |
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Preference number: 6 (lower is better) Translates to: FFEKPSNGLKKP*MMLCVTQDRGT Trigger: GGTACCCCTGTCCTGGGTAACACACAACATCATCCATGGCTTCTTTAACCCATTGCTTGGCTTCTCGAAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008987.5 |
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| CDS CAA 72 bp | AAGCCAAGCAATGGGTTAAAGAAGCCATGGATGATGTaGTGTGTTACCCAGGACAGGGGTACCAGCATCAGA | + |
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Preference number: 6 (lower is better) Translates to: KPSNGLKKPWMM*CVTQDRGTSIR Trigger: TCTGATGCTGGTACCCCTGTCCTGGGTAACACACAACATCATCCATGGCTTCTTTAACCCATTGCTTGGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008987.5 |
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| CDS CCA 72 bp | AGAGCCCATCTGTACTTTCTTCGAGAAGCCAAGCAATaGGTTAAAGAAGCCATGGATGATGTTGTGTGTTAC | + |
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Preference number: 6 (lower is better) Translates to: RAHLYFLREAKQ*VKEAMDDVVCY Trigger: GTAACACACAACATCATCCATGGCTTCTTTAACCCATTGCTTGGCTTCTCGAAGAAAGTACAGATGGGCTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008987.5 |
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| CDS CAA 72 bp | AAGAGGTTCTCTTCAATAGTAAAATTCATGAAACAATaGATGCGCCAATCCCCAAGCACACAGAGCAGCAAT | + |
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Preference number: 6 (lower is better) Translates to: KRFSSIVKFMKQ*MRQSPSTQSSN Trigger: ATTGCTGCTCTGTGTGCTTGGGGATTGGCGCATCAATTGTTTCATGAATTTTACTATTGAAGAGAACCTCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008987.5 |
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