Pregenerated sensors for CLDN11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037625Ensembl transcript IDs: ENSMUST00000046174.8
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACTTTGGCTTTAGTGCCTGGCAGGGAAGTGGGCTTCTCCCCACTGTaGCGAGCAAACCCAGGGCCCAGGCCCAGCATTTACAGCACCTCG | + |
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Preference number: 1 (lower is better) Translates to: TLALVPGREVGFSPL*RANPGPRPSIYSTS Trigger: CGAGGTGCTGTAAATGCTGGGCCTGGGCCCTGGGTTTGCTCGCCACAGTGGGGAGAAGCCCACTTCCCTGCCAGGCACTAAAGCCAAAGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| 3UTR TCA 90 bp | ACAAATGCACCGGACGGAGCTTGCAGTATCCAGAGTCTTAGACACTaGCAGACCATTGGTGTTTACACCCATGAAGCCAAACTTAACAGT | + |
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Preference number: 1 (lower is better) Translates to: TNAPDGACSIQSLRH*QTIGVYTHEAKLNS Trigger: ACTGTTAAGTTTGGCTTCATGGGTGTAAACACCAATGGTCTGTCAGTGTCTAAGACTCTGGATACTGCAAGCTCCGTCCGGTGCATTTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| 3UTR-3UTR CCA 90 bp | TTCCCGTGGAGGGAAAGCTCTGAGTTCCCCTCCCACCCGTGTTCCCAATCTATCGCAGCCAAGAAGTGGTaGGTGGGTGGGTGGGGTGTT | + |
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Preference number: 2 (lower is better) Translates to: FPWRESSEFPSHPCSQSIAAKKW*VGGWGV Trigger: AACACCCCACCCACCCACCCACCACTTCTTGGCTGC...GATAGATTGGGAACACGGGTGGGAGGGGAACTCAGAGCTTTCCCTCCACGGGAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| 3UTR-3UTR CCA 90 bp | ACACCCATGAAGCCAAACTTAACAGTACAACTTATGTTAAACAATACTGCTTCAGGCTTCTCCCCACTGTaGCGAGCAAACCCAGGGCCC | + |
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Preference number: 2 (lower is better) Translates to: TPMKPNLTVQLMLNNTASGFSPL*RANPGP Trigger: GGGCCCTGGGTTTGCTCGCCACAGTGGGGAGAAGCC...TGAAGCAGTATTGTTTAACATAAGTTGTACTGTTAAGTTTGGCTTCATGGGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| 3UTR-3UTR CCA 90 bp | GTTTACACCCATGAAGCCAAACTTAACAGTACAACTTATGTTAAACAATACTGCTGCCTGGCAGGGAAGTaGGCTTCTCCCCACTGTGGC | + |
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Preference number: 2 (lower is better) Translates to: VYTHEAKLNSTTYVKQYCCLAGK*ASPHCG Trigger: GCCACAGTGGGGAGAAGCCCACTTCCCTGCCAGGCA...GCAGTATTGTTTAACATAAGTTGTACTGTTAAGTTTGGCTTCATGGGTGTAAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| 3UTR-3UTR CCA 90 bp | TTTATTTCTTTCCCAATCCACACCCAAGTCAGCAATGTTCCCAAGACATTTGAACCAAGAAGTGGTGGGTaGGTGGGTGGGGTGTTACGA | + |
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Preference number: 2 (lower is better) Translates to: FISFPIHTQVSNVPKTFEPRSGG*VGGVLR Trigger: TCGTAACACCCCACCCACCCACCCACCACTTCTTGG...TTCAAATGTCTTGGGAACATTGCTGACTTGGGTGTGGATTGGGAAAGAAATAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| 3UTR CAA 90 bp | CGGACGGAGCTTGCAGTATCCAGAGTCTTAGACACTGACAGACCATaGGTGTTTACACCCATGAAGCCAAACTTAACAGTACAACTTATG | + |
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Preference number: 2 (lower is better) Translates to: RTELAVSRVLDTDRP*VFTPMKPNLTVQLM Trigger: CATAAGTTGTACTGTTAAGTTTGGCTTCATGGGTGTAAACACCAATGGTCTGTCAGTGTCTAAGACTCTGGATACTGCAAGCTCCGTCCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| 3UTR-3UTR CCA 90 bp | AAACAATACTGCTTCATGGTCTCTAACAGAATGGAGACAGAAATAGAAGGGGAGTTTGGCTTTAGTGCCTaGCAGGGAAGTGGGCTTCTC | + |
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Preference number: 2 (lower is better) Translates to: KQYCFMVSNRMETEIEGEFGFSA*QGSGLL Trigger: GAGAAGCCCACTTCCCTGCCAGGCACTAAAGCCAAA...CTCCCCTTCTATTTCTGTCTCCATTCTGTTAGAGACCATGAAGCAGTATTGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| 3UTR-3UTR CCA 90 bp | AAACAATACTGCTTCATGGTCTCTAACAGAATGGAGACAGAAATAGAAGGGGAGTGGTGGGTGGGTGGGTaGGGTGTTACGACTTCAAAA | + |
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Preference number: 2 (lower is better) Translates to: KQYCFMVSNRMETEIEGEWWVGG*GVTTSK Trigger: TTTTGAAGTCGTAACACCCCACCCACCCACCCACCA...CTCCCCTTCTATTTCTGTCTCCATTCTGTTAGAGACCATGAAGCAGTATTGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| 3UTR CAA 90 bp | GAAGAGAGCTGTCTCTATAAGGCTTCCACTGTCGTTGGTAACCCTTaGAAAAGCATCTTTTATTTCTTTCCCAATCCACACCCAAGTCAG | + |
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Preference number: 2 (lower is better) Translates to: EESCLYKASTVVGNP*KSIFYFFPNPHPSQ Trigger: CTGACTTGGGTGTGGATTGGGAAAGAAATAAAAGATGCTTTTCAAAGGGTTACCAACGACAGTGGAAGCCTTATAGAGACAGCTCTCTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| 3UTR-3UTR CCA 90 bp | TTTATTTCTTTCCCAATCCACACCCAAGTCAGCAATGTTCCCAAGACATTTGAACAGGAGAAAACTATGTaGGCATTAACTGAGCTAGAG | + |
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Preference number: 2 (lower is better) Translates to: FISFPIHTQVSNVPKTFEQEKTM*ALTELE Trigger: CTCTAGCTCAGTTAATGCCCACATAGTTTTCTCCTG...TTCAAATGTCTTGGGAACATTGCTGACTTGGGTGTGGATTGGGAAAGAAATAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| 3UTR-3UTR CCA 90 bp | TTTATTTCTTTCCCAATCCACACCCAAGTCAGCAATGTTCCCAAGACATTTGAATTTAATCAACAACAATaGAATGCCCGAGGAAAGAGC | + |
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Preference number: 2 (lower is better) Translates to: FISFPIHTQVSNVPKTFEFNQQQ*NARGKS Trigger: GCTCTTTCCTCGGGCATTCCATTGTTGTTGATTAAA...TTCAAATGTCTTGGGAACATTGCTGACTTGGGTGTGGATTGGGAAAGAAATAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| 3UTR-3UTR CCA 90 bp | ACACCCATGAAGCCAAACTTAACAGTACAACTTATGTTAAACAATACTGCTTCATATAGCATACAAACCTaGAAACCGTGGGCAGTCAGT | + |
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Preference number: 2 (lower is better) Translates to: TPMKPNLTVQLMLNNTASYSIQT*KPWAVS Trigger: ACTGACTGCCCACGGTTTCCAGGTTTGTATGCTATA...TGAAGCAGTATTGTTTAACATAAGTTGTACTGTTAAGTTTGGCTTCATGGGTGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| 3UTR-3UTR GCA 90 bp | GTTTACACCCATGAAGCCAAACTTAACAGTACAACTTATGTTAAACAATACTGCTTGCATATTAACGTCTaGTTGGTTCATTTCCTTCAT | + |
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Preference number: 2 (lower is better) Translates to: VYTHEAKLNSTTYVKQYCLHINV*LVHFLH Trigger: ATGAAGGAAATGAACCAAGCAGACGTTAATATGCAA...GCAGTATTGTTTAACATAAGTTGTACTGTTAAGTTTGGCTTCATGGGTGTAAAC 34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| 3UTR CCA 72 bp | TTAGTGCCTGGCAGGGAAGTGGGCTTCTCCCCACTGTaGCGAGCAAACCCAGGGCCCAGGCCCAGCATTTAC | + |
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Preference number: 3 (lower is better) Translates to: LVPGREVGFSPL*RANPGPRPSIY Trigger: GTAAATGCTGGGCCTGGGCCCTGGGTTTGCTCGCCACAGTGGGGAGAAGCCCACTTCCCTGCCAGGCACTAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| 3UTR TCA 72 bp | CTTATAAAAGAGAAGCTTCCCGTGGAGGGAAAGCTCTaGGTTCCCCTCCCACCCGTGTTCCCAATCTATCCA | + |
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Preference number: 3 (lower is better) Translates to: LIKEKLPVEGKL*VPLPPVFPIYP Trigger: TGGATAGATTGGGAACACGGGTGGGAGGGGAACTCAGAGCTTTCCCTCCACGGGAAGCTTCTCTTTTATAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| 3UTR TCA 72 bp | CCGGACGGAGCTTGCAGTATCCAGAGTCTTAGACACTaGCAGACCATTGGTGTTTACACCCATGAAGCCAAA | + |
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Preference number: 3 (lower is better) Translates to: PDGACSIQSLRH*QTIGVYTHEAK Trigger: TTTGGCTTCATGGGTGTAAACACCAATGGTCTGTCAGTGTCTAAGACTCTGGATACTGCAAGCTCCGTCCGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| 3UTR-3UTR CAA 90 bp | AAACAATACTGCTTCATGGTCTCTAACAGAATGGAGACAGAAATAGAAGGGGAGCTTCATATTGGTGAATaGAGAATTTTCAGGAAACCC | + |
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Preference number: 3 (lower is better) Translates to: KQYCFMVSNRMETEIEGELHIGE*RIFRKP Trigger: GGGTTTCCTGAAAATTCTCAATTCACCAATATGAAG...CTCCCCTTCTATTTCTGTCTCCATTCTGTTAGAGACCATGAAGCAGTATTGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS-3UTR TCA 90 bp | GTGGCGAGCAAACCCAGGGCCCAGGCCCAGCATTTACAGCACCTCGGCGGGCAGCGGAGCAGCAGACGATaGCACAGCCACCCACCAGGC | + |
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Preference number: 4 (lower is better) Translates to: VASKPRAQAQHLQHLGGQRSSRR*HSHPPG Trigger: GCCTGGTGGGTGGCTGTGTCATCGTCTGCTGCTCCG...CTGCCCGCCGAGGTGCTGTAAATGCTGGGCCTGGGCCCTGGGTTTGCTCGCCAC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS-3UTR CCA 90 bp | GGAAGTGGGCTTCTCCCCACTGTGGCGAGCAAACCCAGGGCCCAGGCCCAGCATGCCACTCCAGGCTCGTaGCCCATTCGGATGCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: GSGLLPTVASKPRAQAQHATPGS*PIRMQG Trigger: CCCCTGCATCCGAATGGGCCACGAGCCTGGAGTGGC...ATGCTGGGCCTGGGCCCTGGGTTTGCTCGCCACAGTGGGGAGAAGCCCACTTCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS-3UTR TCA 90 bp | GGAAGTGGGCTTCTCCCCACTGTGGCGAGCAAACCCAGGGCCCAGGCCCAGCATCGGAGGCAGCAATCATaGGGGCTCTACAAGCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: GSGLLPTVASKPRAQAQHRRQQS*GLYKPA Trigger: TGCAGGCTTGTAGAGCCCTCATGATTGCTGCCTCCG...ATGCTGGGCCTGGGCCCTGGGTTTGCTCGCCACAGTGGGGAGAAGCCCACTTCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS-3UTR CCA 90 bp | GGAAGTGGGCTTCTCCCCACTGTGGCGAGCAAACCCAGGGCCCAGGCCCAGCATACTCTTGGCATGCGTTaGCGAGCTGGAACCAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: GSGLLPTVASKPRAQAQHTLGMR*RAGTRR Trigger: TCTTCTGGTTCCAGCTCGCCAACGCATGCCAAGAGT...ATGCTGGGCCTGGGCCCTGGGTTTGCTCGCCACAGTGGGGAGAAGCCCACTTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS-3UTR CCA 90 bp | GCTTCCCGTGGAGGGAAAGCTCTGAGTTCCCCTCCCACCCGTGTTCCCAATCTAAGACATGGGCACTCTTaGCATGCGTTGGCGAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: ASRGGKALSSPPTRVPNLRHGHS*HALASW Trigger: CCAGCTCGCCAACGCATGCCAAGAGTGCCCATGTCT...TAGATTGGGAACACGGGTGGGAGGGGAACTCAGAGCTTTCCCTCCACGGGAAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS-3UTR TCA 90 bp | GCTTCCCGTGGAGGGAAAGCTCTGAGTTCCCCTCCCACCCGTGTTCCCAATCTAAACCCACGAAGCTCGTaGCGAAACCCACCACCTGAA | + |
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Preference number: 4 (lower is better) Translates to: ASRGGKALSSPPTRVPNLNPRSS*RNPPPE Trigger: TTCAGGTGGTGGGTTTCGTCACGAGCTTCGTGGGTT...TAGATTGGGAACACGGGTGGGAGGGGAACTCAGAGCTTTCCCTCCACGGGAAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS-3UTR GCA 90 bp | GCTTCCCGTGGAGGGAAAGCTCTGAGTTCCCCTCCCACCCGTGTTCCCAATCTATGGGGATGGTGTAGCTaGAGGTCACCACCCAGTCAT | + |
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Preference number: 4 (lower is better) Translates to: ASRGGKALSSPPTRVPNLWGWCS*RSPPSH Trigger: ATGACTGGGTGGTGACCTGCAGCTACACCATCCCCA...TAGATTGGGAACACGGGTGGGAGGGGAACTCAGAGCTTTCCCTCCACGGGAAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS-3UTR CCA 90 bp | AGCTCTGAGTTCCCCTCCCACCCGTGTTCCCAATCTATCCATTTCTATCTCTTAGGGCTCGCCTGTACTTaGCCACTCCAGGCTCGTGGC | + |
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Preference number: 4 (lower is better) Translates to: SSEFPSHPCSQSIHFYLLGLACT*PLQARG Trigger: GCCACGAGCCTGGAGTGGCCAAGTACAGGCGAGCCC...TAAGAGATAGAAATGGATAGATTGGGAACACGGGTGGGAGGGGAACTCAGAGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS-3UTR CCA 90 bp | GCCCGAGGAAAGAGCAAACAGCCACAGCCCGCAACTCCAGGAGAAAACTATGTGAGATGGTGGCGACAATaGCGCAGAGAGCCAGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: ARGKSKQPQPATPGENYVRWWRQ*RREPAE Trigger: TTCTGCTGGCTCTCTGCGCCATTGTCGCCACCATCT...CACATAGTTTTCTCCTGGAGTTGCGGGCTGTGGCTGTTTGCTCTTTCCTCGGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS-3UTR CCA 90 bp | GGTGTTACGACTTCAAAATGCCGGGGCAGGATACTTTCTAGAACTTTGGCTTTAAGCACCCCAGCCAGCTaGGCTCGCCTGTACTTGGCC | + |
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Preference number: 4 (lower is better) Translates to: GVTTSKCRGRILSRTLALSTPAS*ARLYLA Trigger: GGCCAAGTACAGGCGAGCCCAGCTGGCTGGGGTGCT...TAAAGCCAAAGTTCTAGAAAGTATCCTGCCCCGGCATTTTGAAGTCGTAACACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS-3UTR GCA 90 bp | AAGAGCAAACAGCCACAGCCCGCAACTCCAGGAGAAAACTATGTGGGCATTAACTGTCCACCAGGGGTTTaGAGTGGTAGAGACCAGTGG | + |
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Preference number: 4 (lower is better) Translates to: KSKQPQPATPGENYVGINCPPGV*SGRDQW Trigger: CCACTGGTCTCTACCACTGCAAACCCCTGGTGGACA...GTTAATGCCCACATAGTTTTCTCCTGGAGTTGCGGGCTGTGGCTGTTTGCTCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS-3UTR CCA 90 bp | AAGAGCAAACAGCCACAGCCCGCAACTCCAGGAGAAAACTATGTGGGCATTAACCCATTTTTCGGCAGGTaGGGATGGTGTAGCTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: KSKQPQPATPGENYVGINPFFGR*GWCSCR Trigger: CCTGCAGCTACACCATCCCCACCTGCCGAAAAATGG...GTTAATGCCCACATAGTTTTCTCCTGGAGTTGCGGGCTGTGGCTGTTTGCTCTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS-3UTR CCA 90 bp | AAGAGCAAACAGCCACAGCCCGCAACTCCAGGAGAAAACTATGTGGGCATTAACAGCCTGCACGTAGCCTaGAAGGATGAGGATGTCCAC | + |
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Preference number: 4 (lower is better) Translates to: KSKQPQPATPGENYVGINSLHVA*KDEDVH Trigger: GTGGACATCCTCATCCTTCCAGGCTACGTGCAGGCT...GTTAATGCCCACATAGTTTTCTCCTGGAGTTGCGGGCTGTGGCTGTTTGCTCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| 3UTR CAA 72 bp | ACTTCAAAATGCCGGGGCAGGATACTTTCTAGAACTTaGGCTTTAGTGCCTGGCAGGGAAGTGGGCTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: TSKCRGRILSRT*ALVPGREVGFS Trigger: GGAGAAGCCCACTTCCCTGCCAGGCACTAAAGCCAAAGTTCTAGAAAGTATCCTGCCCCGGCATTTTGAAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS-3UTR TCA 90 bp | TTTATTTCTTTCCCAATCCACACCCAAGTCAGCAATGTTCCCAAGACATTTGAACAAAGCTCACGATGGTaGTCTCGCGGTGGGCACATA | + |
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Preference number: 4 (lower is better) Translates to: FISFPIHTQVSNVPKTFEQSSRW*SRGGHI Trigger: TATGTGCCCACCGCGAGATCACCATCGTGAGCTTTG...TTCAAATGTCTTGGGAACATTGCTGACTTGGGTGTGGATTGGGAAAGAAATAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS-3UTR CCA 90 bp | AGACCATTGGTGTTTACACCCATGAAGCCAAACTTAACAGTACAACTTATGTTACAGCCCACAGGCCCTTaGAGCCCAGTTCGTCCATTT | + |
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Preference number: 4 (lower is better) Translates to: RPLVFTPMKPNLTVQLMLQPTGP*SPVRPF Trigger: AAATGGACGAACTGGGCTCCAAGGGCCTGTGGGCTG...TAACATAAGTTGTACTGTTAAGTTTGGCTTCATGGGTGTAAACACCAATGGTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS-3UTR TCA 90 bp | GTTTACACCCATGAAGCCAAACTTAACAGTACAACTTATGTTAAACAATACTGCCGTAGCCTGGAAGGATaGGGATGTCCACCAGGGGTT | + |
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Preference number: 4 (lower is better) Translates to: VYTHEAKLNSTTYVKQYCRSLEG*GCPPGV Trigger: AACCCCTGGTGGACATCCTCATCCTTCCAGGCTACG...GCAGTATTGTTTAACATAAGTTGTACTGTTAAGTTTGGCTTCATGGGTGTAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS-3UTR CCA 90 bp | GTTTACACCCATGAAGCCAAACTTAACAGTACAACTTATGTTAAACAATACTGCCAGGAAACCAGATGGTaGCGACAATGGCGCAGAGAG | + |
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Preference number: 4 (lower is better) Translates to: VYTHEAKLNSTTYVKQYCQETRW*RQWRRE Trigger: CTCTCTGCGCCATTGTCGCCACCATCTGGTTTCCTG...GCAGTATTGTTTAACATAAGTTGTACTGTTAAGTTTGGCTTCATGGGTGTAAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| 3UTR CAA 72 bp | CTTGCAGTATCCAGAGTCTTAGACACTGACAGACCATaGGTGTTTACACCCATGAAGCCAAACTTAACAGTA | + |
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Preference number: 4 (lower is better) Translates to: LAVSRVLDTDRP*VFTPMKPNLTV Trigger: TACTGTTAAGTTTGGCTTCATGGGTGTAAACACCAATGGTCTGTCAGTGTCTAAGACTCTGGATACTGCAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| 3UTR CAA 72 bp | AACGTCTGCTTGGTTCATTTCCTTCATATTGGTGAATaGAGAATTTTCAGGAAACCCGTGGTTATAAAAATG | + |
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Preference number: 4 (lower is better) Translates to: NVCLVHFLHIGE*RIFRKPVVIKM Trigger: CATTTTTATAACCACGGGTTTCCTGAAAATTCTCAATTCACCAATATGAAGGAAATGAACCAAGCAGACGTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS GCA 90 bp | GGGCTCGCCTGTACTTGGCCACTCCAGGCTCGTGGCCCATTCGGATaGAGGGGAGAACTGTCAACAGCAGCAAGATGGCGGGCAGGCCCA | + |
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Preference number: 5 (lower is better) Translates to: GLACTWPLQARGPFG*RGELSTAARWRAGP Trigger: TGGGCCTGCCCGCCATCTTGCTGCTGTTGACAGTTCTCCCCTGCATCCGAATGGGCCACGAGCCTGGAGTGGCCAAGTACAGGCGAGCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS CCA 90 bp | ACAATGGCGCAGAGAGCCAGCAGAATAAGGAGCACCCCAGCCAGCTaGGCTCGCCTGTACTTGGCCACTCCAGGCTCGTGGCCCATTCGG | + |
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Preference number: 5 (lower is better) Translates to: TMAQRASRIRSTPAS*ARLYLATPGSWPIR Trigger: CCGAATGGGCCACGAGCCTGGAGTGGCCAAGTACAGGCGAGCCCAGCTGGCTGGGGTGCTCCTTATTCTGCTGGCTCTCTGCGCCATTGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS CCA 90 bp | CAGCCCACAGGCCCTTGGAGCCCAGTTCGTCCATTTTTCGGCAGGTaGGGATGGTGTAGCTGCAGGTCACCACCCAGTCATTGGTGGACG | + |
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Preference number: 5 (lower is better) Translates to: QPTGPWSPVRPFFGR*GWCSCRSPPSHWWT Trigger: CGTCCACCAATGACTGGGTGGTGACCTGCAGCTACACCATCCCCACCTGCCGAAAAATGGACGAACTGGGCTCCAAGGGCCTGTGGGCTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS-3UTR CAA 90 bp | GCCCGAGGAAAGAGCAAACAGCCACAGCCCGCAACTCCAGGAGAAAACTATGTGTGGGCTCGCCTGTACTaGGCCACTCCAGGCTCGTGG | + |
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Preference number: 5 (lower is better) Translates to: ARGKSKQPQPATPGENYVWARLY*ATPGSW Trigger: CCACGAGCCTGGAGTGGCCAAGTACAGGCGAGCCCA...CACATAGTTTTCTCCTGGAGTTGCGGGCTGTGGCTGTTTGCTCTTTCCTCGGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS TCA 90 bp | CACCGATCCAACCTGCGTACAGCGAGTAGCCAAAGCTCACGATGGTaGTCTCGCGGTGGGCACATACAGGAAACCAGATGGTGGCGACAA | + |
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Preference number: 5 (lower is better) Translates to: HRSNLRTASSQSSRW*SRGGHIQETRWWRQ Trigger: TTGTCGCCACCATCTGGTTTCCTGTATGTGCCCACCGCGAGATCACCATCGTGAGCTTTGGCTACTCGCTGTACGCAGGTTGGATCGGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS TCA 90 bp | AACGGTTTTCTCCAAATGACTGTGCATCCCCGGAGCAGCAGACGATaGCACAGCCACCCACCAGGCACATCACAGCACCGATCCAACCTG | + |
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Preference number: 5 (lower is better) Translates to: NGFLQMTVHPRSSRR*HSHPPGTSQHRSNL Trigger: CAGGTTGGATCGGTGCTGTGATGTGCCTGGTGGGTGGCTGTGTCATCGTCTGCTGCTCCGGGGATGCACAGTCATTTGGAGAAAACCGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS-3UTR CAA 90 bp | AAGAGCAAACAGCCACAGCCCGCAACTCCAGGAGAAAACTATGTGGGCATTAACTCAGCCCACAGGCCCTaGGAGCCCAGTTCGTCCATT | + |
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Preference number: 5 (lower is better) Translates to: KSKQPQPATPGENYVGINSAHRP*EPSSSI Trigger: AATGGACGAACTGGGCTCCAAGGGCCTGTGGGCTGA...GTTAATGCCCACATAGTTTTCTCCTGGAGTTGCGGGCTGTGGCTGTTTGCTCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS-3UTR CAA 90 bp | GTTTACACCCATGAAGCCAAACTTAACAGTACAACTTATGTTAAACAATACTGCGTCACCACCCAGTCATaGGTGGACGTTGTGACGATG | + |
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Preference number: 5 (lower is better) Translates to: VYTHEAKLNSTTYVKQYCVTTQS*VDVVTM Trigger: CATCGTCACAACGTCCACCAATGACTGGGTGGTGAC...GCAGTATTGTTTAACATAAGTTGTACTGTTAAGTTTGGCTTCATGGGTGTAAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS TCA 72 bp | CCACCAGGGGTTTGCAGTGGTAGAGACCAGTGGCCATaGCGCAGTCAGCCCACAGGCCCTTGGAGCCCAGTT | + |
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Preference number: 6 (lower is better) Translates to: PPGVCSGRDQWP*RSQPTGPWSPV Trigger: AACTGGGCTCCAAGGGCCTGTGGGCTGACTGCGTCATGGCCACTGGTCTCTACCACTGCAAACCCCTGGTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS CCA 72 bp | AGCTGGGCTCGCCTGTACTTGGCCACTCCAGGCTCGTaGCCCATTCGGATGCAGGGGAGAACTGTCAACAGC | + |
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Preference number: 6 (lower is better) Translates to: SWARLYLATPGS*PIRMQGRTVNS Trigger: GCTGTTGACAGTTCTCCCCTGCATCCGAATGGGCCACGAGCCTGGAGTGGCCAAGTACAGGCGAGCCCAGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS CAA 72 bp | AGACCAGTGGCCATGACGCAGTCAGCCCACAGGCCCTaGGAGCCCAGTTCGTCCATTTTTCGGCAGGTGGGG | + |
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Preference number: 6 (lower is better) Translates to: RPVAMTQSAHRP*EPSSSIFRQVG Trigger: CCCCACCTGCCGAAAAATGGACGAACTGGGCTCCAAGGGCCTGTGGGCTGACTGCGTCATGGCCACTGGTCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS TCA 72 bp | AGATGGCGGGCAGGCCCAGAACGGAGGCAGCAATCATaGGGGCTCTACAAGCCTGCACGTAGCCTGGAAGGA | + |
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Preference number: 6 (lower is better) Translates to: RWRAGPERRQQS*GLYKPARSLEG Trigger: TCCTTCCAGGCTACGTGCAGGCTTGTAGAGCCCTCATGATTGCTGCCTCCGTTCTGGGCCTGCCCGCCATCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS TCA 72 bp | CTCCAAATGACTGTGCATCCCCGGAGCAGCAGACGATaGCACAGCCACCCACCAGGCACATCACAGCACCGA | + |
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Preference number: 6 (lower is better) Translates to: LQMTVHPRSSRR*HSHPPGTSQHR Trigger: TCGGTGCTGTGATGTGCCTGGTGGGTGGCTGTGTCATCGTCTGCTGCTCCGGGGATGCACAGTCATTTGGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS GCA 72 bp | TGTACTTGGCCACTCCAGGCTCGTGGCCCATTCGGATaGAGGGGAGAACTGTCAACAGCAGCAAGATGGCGG | + |
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Preference number: 6 (lower is better) Translates to: CTWPLQARGPFG*RGELSTAARWR Trigger: CCGCCATCTTGCTGCTGTTGACAGTTCTCCCCTGCATCCGAATGGGCCACGAGCCTGGAGTGGCCAAGTACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS CCA 72 bp | GGCCCTTGGAGCCCAGTTCGTCCATTTTTCGGCAGGTaGGGATGGTGTAGCTGCAGGTCACCACCCAGTCAT | + |
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Preference number: 6 (lower is better) Translates to: GPWSPVRPFFGR*GWCSCRSPPSH Trigger: ATGACTGGGTGGTGACCTGCAGCTACACCATCCCCACCTGCCGAAAAATGGACGAACTGGGCTCCAAGGGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS TCA 72 bp | AACCTGCGTACAGCGAGTAGCCAAAGCTCACGATGGTaGTCTCGCGGTGGGCACATACAGGAAACCAGATGG | + |
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Preference number: 6 (lower is better) Translates to: NLRTASSQSSRW*SRGGHIQETRW Trigger: CCATCTGGTTTCCTGTATGTGCCCACCGCGAGATCACCATCGTGAGCTTTGGCTACTCGCTGTACGCAGGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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| CDS TCA 72 bp | GGAACCAGAAGAGTAATAGAAACGGTTTTCTCCAAATaGCTGTGCATCCCCGGAGCAGCAGACGATGACACA | + |
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Preference number: 6 (lower is better) Translates to: GTRRVIETVFSK*LCIPGAADDDT Trigger: TGTGTCATCGTCTGCTGCTCCGGGGATGCACAGTCATTTGGAGAAAACCGTTTCTATTACTCTTCTGGTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046174.8 |
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