Pregenerated sensors for CLDN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022512Ensembl transcript IDs: ENSMUST00000023154.3
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCTCAGAGGGAAGCAGCAGTTCACAGGCAAAAGCCTTCCCTCCTGTaGTCAGGGAAGATGGTAAGGTACAGCCAAGGCCTGCATAGCCAT | + |
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Preference number: 1 (lower is better) Translates to: SQREAAVHRQKPSLL*SGKMVRYSQGLHSH Trigger: ATGGCTATGCAGGCCTTGGCTGTACCTTACCATCTTCCCTGAGCACAGGAGGGAAGGCTTTTGCCTGTGAACTGCTGCTTCCCTCTGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| 3UTR CCA 90 bp | GCACTGGTCAAAACAAAACAGCACCAACAAGAGGCCATGCACAGCTaGATGGGAGGAAATCAACTCATGACAAAGAGAGATACAGAACAG | + |
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Preference number: 1 (lower is better) Translates to: ALVKTKQHQQEAMHS*MGGNQLMTKRDTEQ Trigger: CTGTTCTGTATCTCTCTTTGTCATGAGTTGATTTCCTCCCATCCAGCTGTGCATGGCCTCTTGTTGGTGCTGTTTTGTTTTGACCAGTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| 3UTR GCA 90 bp | ACTTCATTTGCTTTTAGAGTATACATAGACTTTCACCATTACATTTaGTTAGCAACAGAAGTTCCAGGCCAAACAACTGAAACTAGGGTG | + |
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Preference number: 1 (lower is better) Translates to: TSFAFRVYIDFHHYI*LATEVPGQTTETRV Trigger: CACCCTAGTTTCAGTTGTTTGGCCTGGAACTTCTGTTGCTAAGCAAATGTAATGGTGAAAGTCTATGTATACTCTAAAAGCAAATGAAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| 3UTR TCA 90 bp | ACTCACATTACCTCTACCAGCTGCTTAAGTATAATTATCTCAATTTaGCAGATGGGAAAACGAGGTATAAAGATTGTAAATTGTTCACGG | + |
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Preference number: 1 (lower is better) Translates to: THITSTSCLSIIISI*QMGKRGIKIVNCSR Trigger: CCGTGAACAATTTACAATCTTTATACCTCGTTTTCCCATCTGTCAAATTGAGATAATTATACTTAAGCAGCTGGTAGAGGTAATGTGAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| 3UTR-3UTR GCA 90 bp | GACCGTCCAGAAAGGTCATCGGGAAAACATCATCTGACTAGAATGTTGGTCACCAAGCCTTCCCTCCTGTaGTCAGGGAAGATGGTAAGG | + |
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Preference number: 2 (lower is better) Translates to: DRPERSSGKHHLTRMLVTKPSLL*SGKMVR Trigger: CCTTACCATCTTCCCTGAGCACAGGAGGGAAGGCTT...GGTGACCAACATTCTAGTCAGATGATGTTTTCCCGATGACCTTTCTGGACGGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| 3UTR-3UTR TCA 90 bp | ATGGCAACACCCTTTGTATTACAAAACCTTGCTCTGCTGAAGGGCCTTTCCTATCGGGAAAACATCATCTaGCTAGAATGTTGGTCACCA | + |
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Preference number: 2 (lower is better) Translates to: MATPFVLQNLALLKGLSYRENII*LECWSP Trigger: TGGTGACCAACATTCTAGTCAGATGATGTTTTCCCG...ATAGGAAAGGCCCTTCAGCAGAGCAAGGTTTTGTAATACAAAGGGTGTTGCCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| 3UTR-3UTR GCA 90 bp | AGTATACATAGACTTTCACCATTACATTTGCTTAGCAACAGAAGTTCCAGGCCACCCCCTCTTGACTCATaGAACATAGGCAGGACAAGA | + |
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Preference number: 2 (lower is better) Translates to: SIHRLSPLHLLSNRSSRPPPLDS*NIGRTR Trigger: TCTTGTCCTGCCTATGTTGCATGAGTCAAGAGGGGG...TGGCCTGGAACTTCTGTTGCTAAGCAAATGTAATGGTGAAAGTCTATGTATACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| 3UTR-3UTR GCA 90 bp | GGGAGAGGAGAAGCACAGTTTGCAGGATCTGGGATGGAAAATAAGTACCTAAAATGTCCATTTTGTATTTaGTCCAGGAAGATCTCTTCC | + |
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Preference number: 2 (lower is better) Translates to: GRGEAQFAGSGMENKYLKCPFCI*SRKISS Trigger: GGAAGAGATCTTCCTGGAGCAAATACAAAATGGACA...TTTTAGGTACTTATTTTCCATCCCAGATCCTGCAAACTGTGCTTCTCCTCTCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| 3UTR CAA 90 bp | CGAGGTATAAAGATTGTAAATTGTTCACGGCTACCTAGGGAATATTaGTCACTAGATTACCACTCTGGCAAGTCTAGCAGTTTGTGTAGA | + |
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Preference number: 2 (lower is better) Translates to: RGIKIVNCSRLPREY*SLDYHSGKSSSLCR Trigger: TCTACACAAACTGCTAGACTTGCCAGAGTGGTAATCTAGTGACAAATATTCCCTAGGTAGCCGTGAACAATTTACAATCTTTATACCTCG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| 3UTR-3UTR CCA 90 bp | ATGGCAACACCCTTTGTATTACAAAACCTTGCTCTGCTGAAGGGCCTTTCCTATTCATTTAAAGTGTGCTaGTACAGTATGAGGAGAATA | + |
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Preference number: 2 (lower is better) Translates to: MATPFVLQNLALLKGLSYSFKVC*YSMRRI Trigger: TATTCTCCTCATACTGTACCAGCACACTTTAAATGA...ATAGGAAAGGCCCTTCAGCAGAGCAAGGTTTTGTAATACAAAGGGTGTTGCCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| 3UTR TCA 72 bp | GGGCTCTTGGCCAGTTTGGACCATAGGCTGAAACACTaGCTCCCAACCAAAAGCCTTAAAGACTTAAGATCA | + |
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Preference number: 3 (lower is better) Translates to: GLLASLDHRLKH*LPTKSLKDLRS Trigger: TGATCTTAAGTCTTTAAGGCTTTTGGTTGGGAGTCAGTGTTTCAGCCTATGGTCCAAACTGGCCAAGAGCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| 3UTR-3UTR CAA 90 bp | AGAGCACTGGTCAAAACAAAACAGCACCAACAAGAGGCCATGCACAGCTGGATGATGTCCATTTTGTATTaGCTCCAGGAAGATCTCTTC | + |
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Preference number: 3 (lower is better) Translates to: RALVKTKQHQQEAMHSWMMSILY*LQEDLF Trigger: GAAGAGATCTTCCTGGAGCAAATACAAAATGGACAT...CATCCAGCTGTGCATGGCCTCTTGTTGGTGCTGTTTTGTTTTGACCAGTGCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| 3UTR CCA 72 bp | AATGTTGGTCACCACAGCTCAGAAACAGGAGGACTATaGGATTCTTACTGGTTTTACGCTTCAAAATGTGGG | + |
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Preference number: 3 (lower is better) Translates to: NVGHHSSETGGL*DSYWFYASKCG Trigger: CCCACATTTTGAAGCGTAAAACCAGTAAGAATCCCATAGTCCTCCTGTTTCTGAGCTGTGGTGACCAACATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| 3UTR CCA 72 bp | AGCACCAAGATGCAAATCCAGGTCTACCAATGTCAATaGCAACACCCTTTGTATTACAAAACCTTGCTCTGC | + |
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Preference number: 3 (lower is better) Translates to: STKMQIQVYQCQ*QHPLYYKTLLC Trigger: GCAGAGCAAGGTTTTGTAATACAAAGGGTGTTGCCATTGACATTGGTAGACCTGGATTTGCATCTTGGTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| 3UTR-3UTR CAA 90 bp | CTCTACCAGCTGCTTAAGTATAATTATCTCAATTTGACAGATGGGAAAACGAGGGAGGAGAAGCACAGTTaGCAGGATCTGGGATGGAAA | + |
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Preference number: 3 (lower is better) Translates to: LYQLLKYNYLNLTDGKTREEKHS*QDLGWK Trigger: TTTCCATCCCAGATCCTGCAAACTGTGCTTCTCCTC...CCTCGTTTTCCCATCTGTCAAATTGAGATAATTATACTTAAGCAGCTGGTAGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| 3UTR CCA 72 bp | CACAGCTCAGAAACAGGAGGACTATGGGATTCTTACTaGTTTTACGCTTCAAAATGTGGGCTCCAAATTCAT | + |
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Preference number: 3 (lower is better) Translates to: HSSETGGLWDSY*FYASKCGLQIH Trigger: ATGAATTTGGAGCCCACATTTTGAAGCGTAAAACCAGTAAGAATCCCATAGTCCTCCTGTTTCTGAGCTGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| 3UTR GCA 72 bp | GCTTTTAGAGTATACATAGACTTTCACCATTACATTTaGTTAGCAACAGAAGTTCCAGGCCAAACAACTGAA | + |
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Preference number: 3 (lower is better) Translates to: AFRVYIDFHHYI*LATEVPGQTTE Trigger: TTCAGTTGTTTGGCCTGGAACTTCTGTTGCTAAGCAAATGTAATGGTGAAAGTCTATGTATACTCTAAAAGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| CDS-3UTR TCA 90 bp | ATGAACCCGTTGTCTAGATGTAGCAATACATGTAGGGCAACCAAGTGCCTTTGCGGGGCAGGGCAGTGCTaGCGATGGAGCCGATCCATC | + |
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Preference number: 4 (lower is better) Translates to: MNPLSRCSNTCRATKCLCGAGQC*RWSRSI Trigger: GATGGATCGGCTCCATCGTCAGCACTGCCCTGCCCC...GCAAAGGCACTTGGTTGCCCTACATGTATTGCTACATCTAGACAACGGGTTCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| CDS-3UTR GCA 90 bp | TGCTCAGGGAAGATGGTAAGGTACAGCCAAGGCCTGCATAGCCATGGGGATGTAACTGTATCTGCCCGGTaGTTTGCGAAACGCAGGACA | + |
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Preference number: 4 (lower is better) Translates to: CSGKMVRYSQGLHSHGDVTVSAR*FAKRRT Trigger: TGTCCTGCGTTTCGCAAAGCACCGGGCAGATACAGT...TACATCCCCATGGCTATGCAGGCCTTGGCTGTACCTTACCATCTTCCCTGAGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| CDS-3UTR GCA 90 bp | TGCTCAGGGAAGATGGTAAGGTACAGCCAAGGCCTGCATAGCCATGGGGATGTAAGGAGTCGAAGACTTTaGACTGTATCTGCCCGGTGC | + |
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Preference number: 4 (lower is better) Translates to: CSGKMVRYSQGLHSHGDVRSRRL*TVSARC Trigger: GCACCGGGCAGATACAGTGCAAAGTCTTCGACTCCT...TACATCCCCATGGCTATGCAGGCCTTGGCTGTACCTTACCATCTTCCCTGAGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| CDS-3UTR TCA 90 bp | GGGAGAGGAGAAGCACAGTTTGCAGGATCTGGGATGGAAAATAAGTACCTAAAACCAGAGAAGCCAGGATaGAACCCAGCAGCTGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: GRGEAQFAGSGMENKYLKPEKPG*NPAAAA Trigger: GGCTGCAGCTGCTGGGTTTCATCCTGGCTTCTCTGG...TTTTAGGTACTTATTTTCCATCCCAGATCCTGCAAACTGTGCTTCTCCTCTCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| CDS-3UTR CCA 90 bp | GCACTGGTCAAAACAAAACAGCACCAACAAGAGGCCATGCACAGCTGGATGGGACTTGGGATAAGGCCGTaGTGTTGGGTAAGAGGTTGT | + |
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Preference number: 4 (lower is better) Translates to: ALVKTKQHQQEAMHSWMGLGIRP*CWVRGC Trigger: ACAACCTCTTACCCAACACCACGGCCTTATCCCAAG...TCCCATCCAGCTGTGCATGGCCTCTTGTTGGTGCTGTTTTGTTTTGACCAGTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| CDS-3UTR CCA 90 bp | ATGAACCCGTTGTCTAGATGTAGCAATACATGTAGGGCAACCAAGTGCCTTTGCCCCACTAGAAGGTGTTaGCTTGGGATAAGGCCGTGG | + |
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Preference number: 4 (lower is better) Translates to: MNPLSRCSNTCRATKCLCPTRRC*LGIRPW Trigger: CCACGGCCTTATCCCAAGCCAACACCTTCTAGTGGG...GCAAAGGCACTTGGTTGCCCTACATGTATTGCTACATCTAGACAACGGGTTCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| CDS-3UTR GCA 90 bp | ATGAACCCGTTGTCTAGATGTAGCAATACATGTAGGGCAACCAAGTGCCTTTGCACTTTGCACTGTATCTaGCCGGTGCTTTGCGAAACG | + |
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Preference number: 4 (lower is better) Translates to: MNPLSRCSNTCRATKCLCTLHCI*PVLCET Trigger: CGTTTCGCAAAGCACCGGGCAGATACAGTGCAAAGT...GCAAAGGCACTTGGTTGCCCTACATGTATTGCTACATCTAGACAACGGGTTCAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| CDS-3UTR GCA 90 bp | GACCGTCCAGAAAGGTCATCGGGAAAACATCATCTGACTAGAATGTTGGTCACCAAGGCTCGGGTTGCCTaGAAAGTACTGTTCAGATTC | + |
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Preference number: 4 (lower is better) Translates to: DRPERSSGKHHLTRMLVTKARVA*KVLFRF Trigger: GAATCTGAACAGTACTTTGCAGGCAACCCGAGCCTT...GGTGACCAACATTCTAGTCAGATGATGTTTTCCCGATGACCTTTCTGGACGGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| CDS-3UTR GCA 90 bp | ATGGCAACACCCTTTGTATTACAAAACCTTGCTCTGCTGAAGGGCCTTTCCTATTCAGCCCCAGCAGGATaGCAATTACCATCAAGGCTC | + |
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Preference number: 4 (lower is better) Translates to: MATPFVLQNLALLKGLSYSAPAG*QLPSRL Trigger: GAGCCTTGATGGTAATTGGCATCCTGCTGGGGCTGA...ATAGGAAAGGCCCTTCAGCAGAGCAAGGTTTTGTAATACAAAGGGTGTTGCCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| CDS-3UTR GCA 90 bp | ATGGCAACACCCTTTGTATTACAAAACCTTGCTCTGCTGAAGGGCCTTTCCTATGCCATCCACATCTTCTaGACCTCATCATCTTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: MATPFVLQNLALLKGLSYAIHIF*TSSSSR Trigger: CCTGGAAGATGATGAGGTGCAGAAGATGTGGATGGC...ATAGGAAAGGCCCTTCAGCAGAGCAAGGTTTTGTAATACAAAGGGTGTTGCCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| CDS-3UTR CCA 90 bp | ATGAACCCGTTGTCTAGATGTAGCAATACATGTAGGGCAACCAAGTGCCTTTGCATAAGGCCGTGGTGTTaGGTAAGAGGTTGTTTTCCG | + |
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Preference number: 4 (lower is better) Translates to: MNPLSRCSNTCRATKCLCIRPWC*VRGCFP Trigger: CGGAAAACAACCTCTTACCCAACACCACGGCCTTAT...GCAAAGGCACTTGGTTGCCCTACATGTATTGCTACATCTAGACAACGGGTTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| 3UTR CAA 72 bp | GAAAGGTCATCGGGAAAACATCATCTGACTAGAATGTaGGTCACCACAGCTCAGAAACAGGAGGACTATGGG | + |
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Preference number: 4 (lower is better) Translates to: ERSSGKHHLTRM*VTTAQKQEDYG Trigger: CCCATAGTCCTCCTGTTTCTGAGCTGTGGTGACCAACATTCTAGTCAGATGATGTTTTCCCGATGACCTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| CDS-3UTR GCA 90 bp | AGTATACATAGACTTTCACCATTACATTTGCTTAGCAACAGAAGTTCCAGGCCAGGTGGACACAAAGATTaGGATCAGCCCCAGCAGGAT | + |
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Preference number: 4 (lower is better) Translates to: SIHRLSPLHLLSNRSSRPGGHKD*DQPQQD Trigger: ATCCTGCTGGGGCTGATCGCAATCTTTGTGTCCACC...TGGCCTGGAACTTCTGTTGCTAAGCAAATGTAATGGTGAAAGTCTATGTATACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| CDS-3UTR CCA 90 bp | AGTATACATAGACTTTCACCATTACATTTGCTTAGCAACAGAAGTTCCAGGCCATTCCATACCATGCTGTaGCCACTAATGTCGCCAGAC | + |
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Preference number: 4 (lower is better) Translates to: SIHRLSPLHLLSNRSSRPFHTML*PLMSPD Trigger: GTCTGGCGACATTAGTGGCCACAGCATGGTATGGAA...TGGCCTGGAACTTCTGTTGCTAAGCAAATGTAATGGTGAAAGTCTATGTATACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| 3UTR CAA 72 bp | CGCTTCAAAATGTGGGCTCCAAATTCATTATTAGATTaGGGAGTTAGAATCAAACCTCAGAGTAACAGTCTG | + |
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Preference number: 4 (lower is better) Translates to: RFKMWAPNSLLD*GVRIKPQSNSL Trigger: CAGACTGTTACTCTGAGGTTTGATTCTAACTCCCAAATCTAATAATGAATTTGGAGCCCACATTTTGAAGCG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| CDS GCA 90 bp | ACATCTTCTGCACCTCATCATCTTCCAGGCACCTCATGCACTTCATaGCAATGGTGGACACAAAGATTGCGATCAGCCCCAGCAGGATGC | + |
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Preference number: 5 (lower is better) Translates to: TSSAPHHLPGTSCTS*QWWTQRLRSAPAGC Trigger: GCATCCTGCTGGGGCTGATCGCAATCTTTGTGTCCACCATTGGCATGAAGTGCATGAGGTGCCTGGAAGATGATGAGGTGCAGAAGATGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| CDS CCA 90 bp | CACATAGTCTTTCCCACTAGAAGGTGTTGGCTTGGGATAAGGCCGTaGTGTTGGGTAAGAGGTTGTTTTCCGGGGACAGGAGCAGGAAAG | + |
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Preference number: 5 (lower is better) Translates to: HIVFPTRRCWLGIRP*CWVRGCFPGTGAGK Trigger: CTTTCCTGCTCCTGTCCCCGGAAAACAACCTCTTACCCAACACCACGGCCTTATCCCAAGCCAACACCTTCTAGTGGGAAAGACTATGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| CDS-3UTR CAA 90 bp | GGGAGAGGAGAAGCACAGTTTGCAGGATCTGGGATGGAAAATAAGTACCTAAAAGTGTTGGGTAAGAGGTaGTTTTCCGGGGACAGGAGC | + |
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Preference number: 5 (lower is better) Translates to: GRGEAQFAGSGMENKYLKVLGKR*FSGDRS Trigger: GCTCCTGTCCCCGGAAAACAACCTCTTACCCAACAC...TTTTAGGTACTTATTTTCCATCCCAGATCCTGCAAACTGTGCTTCTCCTCTCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| CDS-3UTR CAA 90 bp | ATGAACCCGTTGTCTAGATGTAGCAATACATGTAGGGCAACCAAGTGCCTTTGCAATTCATACCTGGCATaGATGGGGGTCAAGGGGTCA | + |
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Preference number: 5 (lower is better) Translates to: MNPLSRCSNTCRATKCLCNSYLA*MGVKGS Trigger: TGACCCCTTGACCCCCATCAATGCCAGGTATGAATT...GCAAAGGCACTTGGTTGCCCTACATGTATTGCTACATCTAGACAACGGGTTCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| CDS-3UTR CAA 90 bp | AGCTCAGAAACAGGAGGACTATGGGATTCTTACTGGTTTTACGCTTCAAAATGTAAGGAGTCGAAGACTTaGCACTGTATCTGCCCGGTG | + |
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Preference number: 5 (lower is better) Translates to: SSETGGLWDSYWFYASKCKESKT*HCICPV Trigger: CACCGGGCAGATACAGTGCAAAGTCTTCGACTCCTT...ACATTTTGAAGCGTAAAACCAGTAAGAATCCCATAGTCCTCCTGTTTCTGAGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| CDS CCA 72 bp | ACTAGAAGGTGTTGGCTTGGGATAAGGCCGTGGTGTTaGGTAAGAGGTTGTTTTCCGGGGACAGGAGCAGGA | + |
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Preference number: 6 (lower is better) Translates to: TRRCWLGIRPWC*VRGCFPGTGAG Trigger: TCCTGCTCCTGTCCCCGGAAAACAACCTCTTACCCAACACCACGGCCTTATCCCAAGCCAACACCTTCTAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| CDS CAA 72 bp | TTGGCTTGGGATAAGGCCGTGGTGTTGGGTAAGAGGTaGTTTTCCGGGGACAGGAGCAGGAAAGTAGGACAC | + |
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Preference number: 6 (lower is better) Translates to: LAWDKAVVLGKR*FSGDRSRKVGH Trigger: GTGTCCTACTTTCCTGCTCCTGTCCCCGGAAAACAACCTCTTACCCAACACCACGGCCTTATCCCAAGCCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| CDS GCA 72 bp | GCACCTCATCATCTTCCAGGCACCTCATGCACTTCATaGCAATGGTGGACACAAAGATTGCGATCAGCCCCA | + |
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Preference number: 6 (lower is better) Translates to: APHHLPGTSCTS*QWWTQRLRSAP Trigger: TGGGGCTGATCGCAATCTTTGTGTCCACCATTGGCATGAAGTGCATGAGGTGCCTGGAAGATGATGAGGTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| CDS CCA 72 bp | TTTCCCACTAGAAGGTGTTGGCTTGGGATAAGGCCGTaGTGTTGGGTAAGAGGTTGTTTTCCGGGGACAGGA | + |
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Preference number: 6 (lower is better) Translates to: FPTRRCWLGIRP*CWVRGCFPGTG Trigger: TCCTGTCCCCGGAAAACAACCTCTTACCCAACACCACGGCCTTATCCCAAGCCAACACCTTCTAGTGGGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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| CDS CCA 72 bp | AGAATTCTTGAACAATTCTGTTTCCATACCATGCTGTaGCCACTAATGTCGCCAGACCTGAAATTAAAAATA | + |
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Preference number: 6 (lower is better) Translates to: RILEQFCFHTML*PLMSPDLKLKI Trigger: TATTTTTAATTTCAGGTCTGGCGACATTAGTGGCCACAGCATGGTATGGAAACAGAATTGTTCAAGAATTCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023154.3 |
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