RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CLDN1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022512

Ensembl transcript IDs: ENSMUST00000023154.3

Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCTCAGAGGGAAGCAGCAGTTCACAGGCAAAAGCCTTCCCTCCTGTaGTCAGGGAAGATGGTAAGGTACAGCCAAGGCCTGCATAGCCAT +
Preference number: 1 (lower is better)
Translates to: SQREAAVHRQKPSLL*SGKMVRYSQGLHSH
Trigger: ATGGCTATGCAGGCCTTGGCTGTACCTTACCATCTTCCCTGAGCACAGGAGGGAAGGCTTTTGCCTGTGAACTGCTGCTTCCCTCTGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
3UTR CCA 90 bp GCACTGGTCAAAACAAAACAGCACCAACAAGAGGCCATGCACAGCTaGATGGGAGGAAATCAACTCATGACAAAGAGAGATACAGAACAG +
Preference number: 1 (lower is better)
Translates to: ALVKTKQHQQEAMHS*MGGNQLMTKRDTEQ
Trigger: CTGTTCTGTATCTCTCTTTGTCATGAGTTGATTTCCTCCCATCCAGCTGTGCATGGCCTCTTGTTGGTGCTGTTTTGTTTTGACCAGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
3UTR GCA 90 bp ACTTCATTTGCTTTTAGAGTATACATAGACTTTCACCATTACATTTaGTTAGCAACAGAAGTTCCAGGCCAAACAACTGAAACTAGGGTG +
Preference number: 1 (lower is better)
Translates to: TSFAFRVYIDFHHYI*LATEVPGQTTETRV
Trigger: CACCCTAGTTTCAGTTGTTTGGCCTGGAACTTCTGTTGCTAAGCAAATGTAATGGTGAAAGTCTATGTATACTCTAAAAGCAAATGAAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
3UTR TCA 90 bp ACTCACATTACCTCTACCAGCTGCTTAAGTATAATTATCTCAATTTaGCAGATGGGAAAACGAGGTATAAAGATTGTAAATTGTTCACGG +
Preference number: 1 (lower is better)
Translates to: THITSTSCLSIIISI*QMGKRGIKIVNCSR
Trigger: CCGTGAACAATTTACAATCTTTATACCTCGTTTTCCCATCTGTCAAATTGAGATAATTATACTTAAGCAGCTGGTAGAGGTAATGTGAGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
3UTR-3UTR GCA 90 bp GACCGTCCAGAAAGGTCATCGGGAAAACATCATCTGACTAGAATGTTGGTCACCAAGCCTTCCCTCCTGTaGTCAGGGAAGATGGTAAGG +
Preference number: 2 (lower is better)
Translates to: DRPERSSGKHHLTRMLVTKPSLL*SGKMVR
Trigger: CCTTACCATCTTCCCTGAGCACAGGAGGGAAGGCTT...GGTGACCAACATTCTAGTCAGATGATGTTTTCCCGATGACCTTTCTGGACGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
3UTR-3UTR TCA 90 bp ATGGCAACACCCTTTGTATTACAAAACCTTGCTCTGCTGAAGGGCCTTTCCTATCGGGAAAACATCATCTaGCTAGAATGTTGGTCACCA +
Preference number: 2 (lower is better)
Translates to: MATPFVLQNLALLKGLSYRENII*LECWSP
Trigger: TGGTGACCAACATTCTAGTCAGATGATGTTTTCCCG...ATAGGAAAGGCCCTTCAGCAGAGCAAGGTTTTGTAATACAAAGGGTGTTGCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
3UTR-3UTR GCA 90 bp AGTATACATAGACTTTCACCATTACATTTGCTTAGCAACAGAAGTTCCAGGCCACCCCCTCTTGACTCATaGAACATAGGCAGGACAAGA +
Preference number: 2 (lower is better)
Translates to: SIHRLSPLHLLSNRSSRPPPLDS*NIGRTR
Trigger: TCTTGTCCTGCCTATGTTGCATGAGTCAAGAGGGGG...TGGCCTGGAACTTCTGTTGCTAAGCAAATGTAATGGTGAAAGTCTATGTATACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
3UTR-3UTR GCA 90 bp GGGAGAGGAGAAGCACAGTTTGCAGGATCTGGGATGGAAAATAAGTACCTAAAATGTCCATTTTGTATTTaGTCCAGGAAGATCTCTTCC +
Preference number: 2 (lower is better)
Translates to: GRGEAQFAGSGMENKYLKCPFCI*SRKISS
Trigger: GGAAGAGATCTTCCTGGAGCAAATACAAAATGGACA...TTTTAGGTACTTATTTTCCATCCCAGATCCTGCAAACTGTGCTTCTCCTCTCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
3UTR CAA 90 bp CGAGGTATAAAGATTGTAAATTGTTCACGGCTACCTAGGGAATATTaGTCACTAGATTACCACTCTGGCAAGTCTAGCAGTTTGTGTAGA +
Preference number: 2 (lower is better)
Translates to: RGIKIVNCSRLPREY*SLDYHSGKSSSLCR
Trigger: TCTACACAAACTGCTAGACTTGCCAGAGTGGTAATCTAGTGACAAATATTCCCTAGGTAGCCGTGAACAATTTACAATCTTTATACCTCG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
3UTR-3UTR CCA 90 bp ATGGCAACACCCTTTGTATTACAAAACCTTGCTCTGCTGAAGGGCCTTTCCTATTCATTTAAAGTGTGCTaGTACAGTATGAGGAGAATA +
Preference number: 2 (lower is better)
Translates to: MATPFVLQNLALLKGLSYSFKVC*YSMRRI
Trigger: TATTCTCCTCATACTGTACCAGCACACTTTAAATGA...ATAGGAAAGGCCCTTCAGCAGAGCAAGGTTTTGTAATACAAAGGGTGTTGCCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
3UTR TCA 72 bp GGGCTCTTGGCCAGTTTGGACCATAGGCTGAAACACTaGCTCCCAACCAAAAGCCTTAAAGACTTAAGATCA +
Preference number: 3 (lower is better)
Translates to: GLLASLDHRLKH*LPTKSLKDLRS
Trigger: TGATCTTAAGTCTTTAAGGCTTTTGGTTGGGAGTCAGTGTTTCAGCCTATGGTCCAAACTGGCCAAGAGCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
3UTR-3UTR CAA 90 bp AGAGCACTGGTCAAAACAAAACAGCACCAACAAGAGGCCATGCACAGCTGGATGATGTCCATTTTGTATTaGCTCCAGGAAGATCTCTTC +
Preference number: 3 (lower is better)
Translates to: RALVKTKQHQQEAMHSWMMSILY*LQEDLF
Trigger: GAAGAGATCTTCCTGGAGCAAATACAAAATGGACAT...CATCCAGCTGTGCATGGCCTCTTGTTGGTGCTGTTTTGTTTTGACCAGTGCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
3UTR CCA 72 bp AATGTTGGTCACCACAGCTCAGAAACAGGAGGACTATaGGATTCTTACTGGTTTTACGCTTCAAAATGTGGG +
Preference number: 3 (lower is better)
Translates to: NVGHHSSETGGL*DSYWFYASKCG
Trigger: CCCACATTTTGAAGCGTAAAACCAGTAAGAATCCCATAGTCCTCCTGTTTCTGAGCTGTGGTGACCAACATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
3UTR CCA 72 bp AGCACCAAGATGCAAATCCAGGTCTACCAATGTCAATaGCAACACCCTTTGTATTACAAAACCTTGCTCTGC +
Preference number: 3 (lower is better)
Translates to: STKMQIQVYQCQ*QHPLYYKTLLC
Trigger: GCAGAGCAAGGTTTTGTAATACAAAGGGTGTTGCCATTGACATTGGTAGACCTGGATTTGCATCTTGGTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
3UTR-3UTR CAA 90 bp CTCTACCAGCTGCTTAAGTATAATTATCTCAATTTGACAGATGGGAAAACGAGGGAGGAGAAGCACAGTTaGCAGGATCTGGGATGGAAA +
Preference number: 3 (lower is better)
Translates to: LYQLLKYNYLNLTDGKTREEKHS*QDLGWK
Trigger: TTTCCATCCCAGATCCTGCAAACTGTGCTTCTCCTC...CCTCGTTTTCCCATCTGTCAAATTGAGATAATTATACTTAAGCAGCTGGTAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
3UTR CCA 72 bp CACAGCTCAGAAACAGGAGGACTATGGGATTCTTACTaGTTTTACGCTTCAAAATGTGGGCTCCAAATTCAT +
Preference number: 3 (lower is better)
Translates to: HSSETGGLWDSY*FYASKCGLQIH
Trigger: ATGAATTTGGAGCCCACATTTTGAAGCGTAAAACCAGTAAGAATCCCATAGTCCTCCTGTTTCTGAGCTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
3UTR GCA 72 bp GCTTTTAGAGTATACATAGACTTTCACCATTACATTTaGTTAGCAACAGAAGTTCCAGGCCAAACAACTGAA +
Preference number: 3 (lower is better)
Translates to: AFRVYIDFHHYI*LATEVPGQTTE
Trigger: TTCAGTTGTTTGGCCTGGAACTTCTGTTGCTAAGCAAATGTAATGGTGAAAGTCTATGTATACTCTAAAAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
CDS-3UTR TCA 90 bp ATGAACCCGTTGTCTAGATGTAGCAATACATGTAGGGCAACCAAGTGCCTTTGCGGGGCAGGGCAGTGCTaGCGATGGAGCCGATCCATC +
Preference number: 4 (lower is better)
Translates to: MNPLSRCSNTCRATKCLCGAGQC*RWSRSI
Trigger: GATGGATCGGCTCCATCGTCAGCACTGCCCTGCCCC...GCAAAGGCACTTGGTTGCCCTACATGTATTGCTACATCTAGACAACGGGTTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
CDS-3UTR GCA 90 bp TGCTCAGGGAAGATGGTAAGGTACAGCCAAGGCCTGCATAGCCATGGGGATGTAACTGTATCTGCCCGGTaGTTTGCGAAACGCAGGACA +
Preference number: 4 (lower is better)
Translates to: CSGKMVRYSQGLHSHGDVTVSAR*FAKRRT
Trigger: TGTCCTGCGTTTCGCAAAGCACCGGGCAGATACAGT...TACATCCCCATGGCTATGCAGGCCTTGGCTGTACCTTACCATCTTCCCTGAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
CDS-3UTR GCA 90 bp TGCTCAGGGAAGATGGTAAGGTACAGCCAAGGCCTGCATAGCCATGGGGATGTAAGGAGTCGAAGACTTTaGACTGTATCTGCCCGGTGC +
Preference number: 4 (lower is better)
Translates to: CSGKMVRYSQGLHSHGDVRSRRL*TVSARC
Trigger: GCACCGGGCAGATACAGTGCAAAGTCTTCGACTCCT...TACATCCCCATGGCTATGCAGGCCTTGGCTGTACCTTACCATCTTCCCTGAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
CDS-3UTR TCA 90 bp GGGAGAGGAGAAGCACAGTTTGCAGGATCTGGGATGGAAAATAAGTACCTAAAACCAGAGAAGCCAGGATaGAACCCAGCAGCTGCAGCC +
Preference number: 4 (lower is better)
Translates to: GRGEAQFAGSGMENKYLKPEKPG*NPAAAA
Trigger: GGCTGCAGCTGCTGGGTTTCATCCTGGCTTCTCTGG...TTTTAGGTACTTATTTTCCATCCCAGATCCTGCAAACTGTGCTTCTCCTCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
CDS-3UTR CCA 90 bp GCACTGGTCAAAACAAAACAGCACCAACAAGAGGCCATGCACAGCTGGATGGGACTTGGGATAAGGCCGTaGTGTTGGGTAAGAGGTTGT +
Preference number: 4 (lower is better)
Translates to: ALVKTKQHQQEAMHSWMGLGIRP*CWVRGC
Trigger: ACAACCTCTTACCCAACACCACGGCCTTATCCCAAG...TCCCATCCAGCTGTGCATGGCCTCTTGTTGGTGCTGTTTTGTTTTGACCAGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
CDS-3UTR CCA 90 bp ATGAACCCGTTGTCTAGATGTAGCAATACATGTAGGGCAACCAAGTGCCTTTGCCCCACTAGAAGGTGTTaGCTTGGGATAAGGCCGTGG +
Preference number: 4 (lower is better)
Translates to: MNPLSRCSNTCRATKCLCPTRRC*LGIRPW
Trigger: CCACGGCCTTATCCCAAGCCAACACCTTCTAGTGGG...GCAAAGGCACTTGGTTGCCCTACATGTATTGCTACATCTAGACAACGGGTTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
CDS-3UTR GCA 90 bp ATGAACCCGTTGTCTAGATGTAGCAATACATGTAGGGCAACCAAGTGCCTTTGCACTTTGCACTGTATCTaGCCGGTGCTTTGCGAAACG +
Preference number: 4 (lower is better)
Translates to: MNPLSRCSNTCRATKCLCTLHCI*PVLCET
Trigger: CGTTTCGCAAAGCACCGGGCAGATACAGTGCAAAGT...GCAAAGGCACTTGGTTGCCCTACATGTATTGCTACATCTAGACAACGGGTTCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
CDS-3UTR GCA 90 bp GACCGTCCAGAAAGGTCATCGGGAAAACATCATCTGACTAGAATGTTGGTCACCAAGGCTCGGGTTGCCTaGAAAGTACTGTTCAGATTC +
Preference number: 4 (lower is better)
Translates to: DRPERSSGKHHLTRMLVTKARVA*KVLFRF
Trigger: GAATCTGAACAGTACTTTGCAGGCAACCCGAGCCTT...GGTGACCAACATTCTAGTCAGATGATGTTTTCCCGATGACCTTTCTGGACGGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
CDS-3UTR GCA 90 bp ATGGCAACACCCTTTGTATTACAAAACCTTGCTCTGCTGAAGGGCCTTTCCTATTCAGCCCCAGCAGGATaGCAATTACCATCAAGGCTC +
Preference number: 4 (lower is better)
Translates to: MATPFVLQNLALLKGLSYSAPAG*QLPSRL
Trigger: GAGCCTTGATGGTAATTGGCATCCTGCTGGGGCTGA...ATAGGAAAGGCCCTTCAGCAGAGCAAGGTTTTGTAATACAAAGGGTGTTGCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
CDS-3UTR GCA 90 bp ATGGCAACACCCTTTGTATTACAAAACCTTGCTCTGCTGAAGGGCCTTTCCTATGCCATCCACATCTTCTaGACCTCATCATCTTCCAGG +
Preference number: 4 (lower is better)
Translates to: MATPFVLQNLALLKGLSYAIHIF*TSSSSR
Trigger: CCTGGAAGATGATGAGGTGCAGAAGATGTGGATGGC...ATAGGAAAGGCCCTTCAGCAGAGCAAGGTTTTGTAATACAAAGGGTGTTGCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
CDS-3UTR CCA 90 bp ATGAACCCGTTGTCTAGATGTAGCAATACATGTAGGGCAACCAAGTGCCTTTGCATAAGGCCGTGGTGTTaGGTAAGAGGTTGTTTTCCG +
Preference number: 4 (lower is better)
Translates to: MNPLSRCSNTCRATKCLCIRPWC*VRGCFP
Trigger: CGGAAAACAACCTCTTACCCAACACCACGGCCTTAT...GCAAAGGCACTTGGTTGCCCTACATGTATTGCTACATCTAGACAACGGGTTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
3UTR CAA 72 bp GAAAGGTCATCGGGAAAACATCATCTGACTAGAATGTaGGTCACCACAGCTCAGAAACAGGAGGACTATGGG +
Preference number: 4 (lower is better)
Translates to: ERSSGKHHLTRM*VTTAQKQEDYG
Trigger: CCCATAGTCCTCCTGTTTCTGAGCTGTGGTGACCAACATTCTAGTCAGATGATGTTTTCCCGATGACCTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
CDS-3UTR GCA 90 bp AGTATACATAGACTTTCACCATTACATTTGCTTAGCAACAGAAGTTCCAGGCCAGGTGGACACAAAGATTaGGATCAGCCCCAGCAGGAT +
Preference number: 4 (lower is better)
Translates to: SIHRLSPLHLLSNRSSRPGGHKD*DQPQQD
Trigger: ATCCTGCTGGGGCTGATCGCAATCTTTGTGTCCACC...TGGCCTGGAACTTCTGTTGCTAAGCAAATGTAATGGTGAAAGTCTATGTATACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
CDS-3UTR CCA 90 bp AGTATACATAGACTTTCACCATTACATTTGCTTAGCAACAGAAGTTCCAGGCCATTCCATACCATGCTGTaGCCACTAATGTCGCCAGAC +
Preference number: 4 (lower is better)
Translates to: SIHRLSPLHLLSNRSSRPFHTML*PLMSPD
Trigger: GTCTGGCGACATTAGTGGCCACAGCATGGTATGGAA...TGGCCTGGAACTTCTGTTGCTAAGCAAATGTAATGGTGAAAGTCTATGTATACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
3UTR CAA 72 bp CGCTTCAAAATGTGGGCTCCAAATTCATTATTAGATTaGGGAGTTAGAATCAAACCTCAGAGTAACAGTCTG +
Preference number: 4 (lower is better)
Translates to: RFKMWAPNSLLD*GVRIKPQSNSL
Trigger: CAGACTGTTACTCTGAGGTTTGATTCTAACTCCCAAATCTAATAATGAATTTGGAGCCCACATTTTGAAGCG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
CDS GCA 90 bp ACATCTTCTGCACCTCATCATCTTCCAGGCACCTCATGCACTTCATaGCAATGGTGGACACAAAGATTGCGATCAGCCCCAGCAGGATGC +
Preference number: 5 (lower is better)
Translates to: TSSAPHHLPGTSCTS*QWWTQRLRSAPAGC
Trigger: GCATCCTGCTGGGGCTGATCGCAATCTTTGTGTCCACCATTGGCATGAAGTGCATGAGGTGCCTGGAAGATGATGAGGTGCAGAAGATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
CDS CCA 90 bp CACATAGTCTTTCCCACTAGAAGGTGTTGGCTTGGGATAAGGCCGTaGTGTTGGGTAAGAGGTTGTTTTCCGGGGACAGGAGCAGGAAAG +
Preference number: 5 (lower is better)
Translates to: HIVFPTRRCWLGIRP*CWVRGCFPGTGAGK
Trigger: CTTTCCTGCTCCTGTCCCCGGAAAACAACCTCTTACCCAACACCACGGCCTTATCCCAAGCCAACACCTTCTAGTGGGAAAGACTATGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
CDS-3UTR CAA 90 bp GGGAGAGGAGAAGCACAGTTTGCAGGATCTGGGATGGAAAATAAGTACCTAAAAGTGTTGGGTAAGAGGTaGTTTTCCGGGGACAGGAGC +
Preference number: 5 (lower is better)
Translates to: GRGEAQFAGSGMENKYLKVLGKR*FSGDRS
Trigger: GCTCCTGTCCCCGGAAAACAACCTCTTACCCAACAC...TTTTAGGTACTTATTTTCCATCCCAGATCCTGCAAACTGTGCTTCTCCTCTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
CDS-3UTR CAA 90 bp ATGAACCCGTTGTCTAGATGTAGCAATACATGTAGGGCAACCAAGTGCCTTTGCAATTCATACCTGGCATaGATGGGGGTCAAGGGGTCA +
Preference number: 5 (lower is better)
Translates to: MNPLSRCSNTCRATKCLCNSYLA*MGVKGS
Trigger: TGACCCCTTGACCCCCATCAATGCCAGGTATGAATT...GCAAAGGCACTTGGTTGCCCTACATGTATTGCTACATCTAGACAACGGGTTCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
CDS-3UTR CAA 90 bp AGCTCAGAAACAGGAGGACTATGGGATTCTTACTGGTTTTACGCTTCAAAATGTAAGGAGTCGAAGACTTaGCACTGTATCTGCCCGGTG +
Preference number: 5 (lower is better)
Translates to: SSETGGLWDSYWFYASKCKESKT*HCICPV
Trigger: CACCGGGCAGATACAGTGCAAAGTCTTCGACTCCTT...ACATTTTGAAGCGTAAAACCAGTAAGAATCCCATAGTCCTCCTGTTTCTGAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
CDS CCA 72 bp ACTAGAAGGTGTTGGCTTGGGATAAGGCCGTGGTGTTaGGTAAGAGGTTGTTTTCCGGGGACAGGAGCAGGA +
Preference number: 6 (lower is better)
Translates to: TRRCWLGIRPWC*VRGCFPGTGAG
Trigger: TCCTGCTCCTGTCCCCGGAAAACAACCTCTTACCCAACACCACGGCCTTATCCCAAGCCAACACCTTCTAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
CDS CAA 72 bp TTGGCTTGGGATAAGGCCGTGGTGTTGGGTAAGAGGTaGTTTTCCGGGGACAGGAGCAGGAAAGTAGGACAC +
Preference number: 6 (lower is better)
Translates to: LAWDKAVVLGKR*FSGDRSRKVGH
Trigger: GTGTCCTACTTTCCTGCTCCTGTCCCCGGAAAACAACCTCTTACCCAACACCACGGCCTTATCCCAAGCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
CDS GCA 72 bp GCACCTCATCATCTTCCAGGCACCTCATGCACTTCATaGCAATGGTGGACACAAAGATTGCGATCAGCCCCA +
Preference number: 6 (lower is better)
Translates to: APHHLPGTSCTS*QWWTQRLRSAP
Trigger: TGGGGCTGATCGCAATCTTTGTGTCCACCATTGGCATGAAGTGCATGAGGTGCCTGGAAGATGATGAGGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
CDS CCA 72 bp TTTCCCACTAGAAGGTGTTGGCTTGGGATAAGGCCGTaGTGTTGGGTAAGAGGTTGTTTTCCGGGGACAGGA +
Preference number: 6 (lower is better)
Translates to: FPTRRCWLGIRP*CWVRGCFPGTG
Trigger: TCCTGTCCCCGGAAAACAACCTCTTACCCAACACCACGGCCTTATCCCAAGCCAACACCTTCTAGTGGGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3
CDS CCA 72 bp AGAATTCTTGAACAATTCTGTTTCCATACCATGCTGTaGCCACTAATGTCGCCAGACCTGAAATTAAAAATA +
Preference number: 6 (lower is better)
Translates to: RILEQFCFHTML*PLMSPDLKLKI
Trigger: TATTTTTAATTTCAGGTCTGGCGACATTAGTGGCCACAGCATGGTATGGAAACAGAATTGTTCAAGAATTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023154.3