Pregenerated sensors for CLCNKB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000006216Ensembl transcript IDs: ENSMUST00000006378.9, ENSMUST00000105788.2, ENSMUST00000135486.8
Found 130 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AATATGGAGCGTTCTTCTCTGCTGAGTGGAGATGTCTTGCCGGGCTaGGAGATCCCAGATCCATGGCAGCTGAGCAGCTGGGTGCCAGGC | + |
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Preference number: 1 (lower is better) Translates to: NMERSSLLSGDVLPG*EIPDPWQLSSWVPG Trigger: GCCTGGCACCCAGCTGCTCAGCTGCCATGGATCTGGGATCTCTCAGCCCGGCAAGACATCTCCACTCAGCAGAGAAGAACGCTCCATATT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 ENSMUST00000135486.8 |
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| 3UTR-3UTR CCA 90 bp | GAATATGGAGCGTTCTTCTCTGCTGAGTGGAGATGTCTTGCCGGGCTGAGAGATTGGCAGCTGAGCAGCTaGGTGCCAGGCTGCCGACCC | + |
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Preference number: 2 (lower is better) Translates to: EYGAFFSAEWRCLAGLRDWQLSS*VPGCRP Trigger: GGGTCGGCAGCCTGGCACCCAGCTGCTCAGCTGCCA...ATCTCTCAGCCCGGCAAGACATCTCCACTCAGCAGAGAAGAACGCTCCATATTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 ENSMUST00000135486.8 |
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| 3UTR-3UTR CCA 90 bp | CTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTGCTGAGTGGAGATGGCAGCTGAGCAGCTaGGTGCCAGGCTGCCGACCC | + |
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Preference number: 2 (lower is better) Translates to: LLQGSECEYGAFFSAEWRWQLSS*VPGCRP Trigger: GGGTCGGCAGCCTGGCACCCAGCTGCTCAGCTGCCA...TCTCCACTCAGCAGAGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 ENSMUST00000135486.8 |
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| 3UTR-3UTR CCA 90 bp | GGCTCCAGACATCAGTTTTATTTTTCTCAGAAGCTCCTGGTTAGCAGCAGGCAATGGCAGCTGAGCAGCTaGGTGCCAGGCTGCCGACCC | + |
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Preference number: 2 (lower is better) Translates to: GSRHQFYFSQKLLVSSRQWQLSS*VPGCRP Trigger: GGGTCGGCAGCCTGGCACCCAGCTGCTCAGCTGCCA...TTGCCTGCTGCTAACCAGGAGCTTCTGAGAAAAATAAAACTGATGTCTGGAGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 ENSMUST00000135486.8 |
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| 3UTR-3UTR CCA 90 bp | CTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTGCTGAGTGGAGAGAGATCCCAGATCCATaGCAGCTGAGCAGCTGGGTG | + |
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Preference number: 2 (lower is better) Translates to: LLQGSECEYGAFFSAEWREIPDP*QLSSWV Trigger: CACCCAGCTGCTCAGCTGCCATGGATCTGGGATCTC...TCTCCACTCAGCAGAGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 ENSMUST00000135486.8 |
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| 3UTR-3UTR GCA 90 bp | ACTCTCAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTGCTGCTGGAGGGAATTCGGTaGCCCCAACTCCTCAACGTT | + |
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Preference number: 2 (lower is better) Translates to: TLSSFRDRSVNMERSSLLLEGIR*PQLLNV Trigger: AACGTTGAGGAGTTGGGGGCACCGAATTCCCTCCAG...CAGCAGAGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAGCTGAGAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105788.2 |
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| 3UTR-3UTR CCA 90 bp | CAACCCCAGAAGTCACAAGGGTCACAATGTCTTCATTTACTCTCAGCTCCTTCAGAGATCCCAGATCCATaGCAGCTGAGCAGCTGGGTG | + |
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Preference number: 2 (lower is better) Translates to: QPQKSQGSQCLHLLSAPSEIPDP*QLSSWV Trigger: CACCCAGCTGCTCAGCTGCCATGGATCTGGGATCTC...TGAAGGAGCTGAGAGTAAATGAAGACATTGTGACCCTTGTGACTTCTGGGGTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 ENSMUST00000135486.8 |
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| 3UTR TCA 72 bp | CGTTCTTCTCTGCTGAGTGGAGATGTCTTGCCGGGCTaGGAGATCCCAGATCCATGGCAGCTGAGCAGCTGG | + |
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Preference number: 3 (lower is better) Translates to: RSSLLSGDVLPG*EIPDPWQLSSW Trigger: CCAGCTGCTCAGCTGCCATGGATCTGGGATCTCTCAGCCCGGCAAGACATCTCCACTCAGCAGAGAAGAACG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 ENSMUST00000135486.8 |
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| 3UTR-3UTR CAA 90 bp | CAACCCCAGAAGTCACAAGGGTCACAATGTCTTCATTTACTCTCAGCTCCTTCACCCAGGCTGACTCACTaGGGGGCAGGAGGATTGGTC | + |
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Preference number: 3 (lower is better) Translates to: QPQKSQGSQCLHLLSAPSPRLTH*GAGGLV Trigger: GACCAATCCTCCTGCCCCCAAGTGAGTCAGCCTGGG...TGAAGGAGCTGAGAGTAAATGAAGACATTGTGACCCTTGTGACTTCTGGGGTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105788.2 |
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| CDS-3UTR GCA 90 bp | GGAGGCGAGGCTGGAGGGAATTCGGTGCCCCCAACTCCTCAACGTTGCCCAGCCGGCCCCCAGAGTTCTTaGAGTGGCACTGGCTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: GGEAGGNSVPPTPQRCPAGPQSS*SGTGFL Trigger: CAAGAAGCCAGTGCCACTGCAAGAACTCTGGGGGCC...GGCTGGGCAACGTTGAGGAGTTGGGGGCACCGAATTCCCTCCAGCCTCGCCTCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000105788.2 |
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| CDS-3UTR GCA 90 bp | GCGTTCTTCTCTGCTGAGTGGAGATGTCTTGCCGGGCTGAGAGATCCCAGATCCGGGATCAGGCTCCGCTaGCCAGGGTGGAGACGAGTT | + |
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Preference number: 4 (lower is better) Translates to: AFFSAEWRCLAGLRDPRSGIRLR*PGWRRV Trigger: AACTCGTCTCCACCCTGGGCAGCGGAGCCTGATCCC...GGATCTGGGATCTCTCAGCCCGGCAAGACATCTCCACTCAGCAGAGAAGAACGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR CCA 90 bp | GAGTGGAGATGTCTTGCCGGGCTGAGAGATCCCAGATCCATGGCAGCTGAGCAGCGGGAAGCCATGAAGTaGCCCACACCAGGGGGATAC | + |
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Preference number: 4 (lower is better) Translates to: EWRCLAGLRDPRSMAAEQREAMK*PTPGGY Trigger: GTATCCCCCTGGTGTGGGCCACTTCATGGCTTCCCG...CTGCTCAGCTGCCATGGATCTGGGATCTCTCAGCCCGGCAAGACATCTCCACTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR TCA 90 bp | CAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTGCTGAGTGGACAGCCGGGAAGCCATaGAGTGGCCCACACCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: QLLQGSECEYGAFFSAEWTAGKP*SGPHQG Trigger: CCCCTGGTGTGGGCCACTTCATGGCTTCCCGGCTGT...CCACTCAGCAGAGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR GCA 90 bp | GCCGGGCTGAGAGATCCCAGATCCATGGCAGCTGAGCAGCTGGGTGCCAGGCTGATCATCACGCTCAGGTaGACGAAGGGACCCAATTTT | + |
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Preference number: 4 (lower is better) Translates to: AGLRDPRSMAAEQLGARLIITLR*TKGPNF Trigger: AAAATTGGGTCCCTTCGTGCACCTGAGCGTGATGAT...CAGCCTGGCACCCAGCTGCTCAGCTGCCATGGATCTGGGATCTCTCAGCCCGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR GCA 90 bp | GGAGCGTTCTTCTCTGCTGAGTGGAGATGTCTTGCCGGGCTGAGAGATCCCAGACATCAGCACAGGCAGTaGGTGAACGAGCTGGCCCGT | + |
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Preference number: 4 (lower is better) Translates to: GAFFSAEWRCLAGLRDPRHQHRQ*VNELAR Trigger: ACGGGCCAGCTCGTTCACGCACTGCCTGTGCTGATG...TCTGGGATCTCTCAGCCCGGCAAGACATCTCCACTCAGCAGAGAAGAACGCTCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR GCA 90 bp | GGAGCGTTCTTCTCTGCTGAGTGGAGATGTCTTGCCGGGCTGAGAGATCCCAGAGTCTCCAGGGACAGCTaGAGTGTCACTGGCTGGGTG | + |
|
Preference number: 4 (lower is better) Translates to: GAFFSAEWRCLAGLRDPRVSRDS*SVTGWV Trigger: CACCCAGCCAGTGACACTGCAGCTGTCCCTGGAGAC...TCTGGGATCTCTCAGCCCGGCAAGACATCTCCACTCAGCAGAGAAGAACGCTCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR TCA 90 bp | GCAGCAGGCAACCCCAGAAGTCACAAGGGTCACAATGTCTTCATTTACTCTCAGGTGGGTCACCGCCCCTaGGAAGGCAGCAGCACCTGC | + |
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Preference number: 4 (lower is better) Translates to: AAGNPRSHKGHNVFIYSQVGHRP*EGSSTC Trigger: GCAGGTGCTGCTGCCTTCTCAGGGGCGGTGACCCAC...CTGAGAGTAAATGAAGACATTGTGACCCTTGTGACTTCTGGGGTTGCCTGCTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR GCA 90 bp | CTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTGCTGAGTGGAGAGAAGGCAGCAGCACCTaGCAGAGCATAGGCCCCGGG | + |
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Preference number: 4 (lower is better) Translates to: LLQGSECEYGAFFSAEWREGSST*QSIGPG Trigger: CCCGGGGCCTATGCTCTGGCAGGTGCTGCTGCCTTC...TCTCCACTCAGCAGAGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR CCA 90 bp | GGAGCGTTCTTCTCTGCTGAGTGGAGATGTCTTGCCGGGCTGAGAGATCCCAGATTCTTGCAGTGGCACTaGCTTCTTGGAGGCGCCCTC | + |
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Preference number: 4 (lower is better) Translates to: GAFFSAEWRCLAGLRDPRFLQWH*LLGGAL Trigger: GAGGGCGCCTCCAAGAAGCCAGTGCCACTGCAAGAA...TCTGGGATCTCTCAGCCCGGCAAGACATCTCCACTCAGCAGAGAAGAACGCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR GCA 90 bp | GCGTTCTTCTCTGCTGAGTGGAGATGTCTTGCCGGGCTGAGAGATCCCAGATCCACCCACTGCTGCTCCTaGGGCCAACAGTTCCATTTC | + |
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Preference number: 4 (lower is better) Translates to: AFFSAEWRCLAGLRDPRSTHCCS*GQQFHF Trigger: GAAATGGAACTGTTGGCCGCAGGAGCAGCAGTGGGT...GGATCTGGGATCTCTCAGCCCGGCAAGACATCTCCACTCAGCAGAGAAGAACGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR GCA 90 bp | TTCTTCTCTGCTGAGTGGAGATGTCTTGCCGGGCTGAGAGATCCCAGATCCATGCATCAGCACAGGCAGTaGGTGAACGAGCTGGCCCGT | + |
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Preference number: 4 (lower is better) Translates to: FFSAEWRCLAGLRDPRSMHQHRQ*VNELAR Trigger: ACGGGCCAGCTCGTTCACGCACTGCCTGTGCTGATG...CATGGATCTGGGATCTCTCAGCCCGGCAAGACATCTCCACTCAGCAGAGAAGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR GCA 90 bp | CTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTGCTGAGTGGAGATCCTGGAGACAGGGCTaGTGGCCTGGAGCCCAGGAA | + |
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Preference number: 4 (lower is better) Translates to: LLQGSECEYGAFFSAEWRSWRQG*WPGAQE Trigger: TTCCTGGGCTCCAGGCCAGCAGCCCTGTCTCCAGGA...TCTCCACTCAGCAGAGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR TCA 90 bp | GAGTGGAGATGTCTTGCCGGGCTGAGAGATCCCAGATCCATGGCAGCTGAGCAGTCTCCTGTTCATTGTTaGAGACTGCCAGGAGGTGGA | + |
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Preference number: 4 (lower is better) Translates to: EWRCLAGLRDPRSMAAEQSPVHC*RLPGGG Trigger: TCCACCTCCTGGCAGTCTTCAACAATGAACAGGAGA...CTGCTCAGCTGCCATGGATCTGGGATCTCTCAGCCCGGCAAGACATCTCCACTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR TCA 90 bp | CTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTGCTGAGTGGAGACACCAGGGGGATACGTaGTGGAAGCCAGGACCACAG | + |
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Preference number: 4 (lower is better) Translates to: LLQGSECEYGAFFSAEWRHQGDT*WKPGPQ Trigger: CTGTGGTCCTGGCTTCCATCACGTATCCCCCTGGTG...TCTCCACTCAGCAGAGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR TCA 90 bp | ATTTACTCTCAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTGTGGGTCACCGCCCCTaGGAAGGCAGCAGCACCTGC | + |
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Preference number: 4 (lower is better) Translates to: IYSQLLQGSECEYGAFFSVGHRP*EGSSTC Trigger: GCAGGTGCTGCTGCCTTCTCAGGGGCGGTGACCCAC...AGAGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAGCTGAGAGTAAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR GCA 90 bp | GCAGCAGGCAACCCCAGAAGTCACAAGGGTCACAATGTCTTCATTTACTCTCAGGGGATCAGGCTCCGCTaGCCAGGGTGGAGACGAGTT | + |
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Preference number: 4 (lower is better) Translates to: AAGNPRSHKGHNVFIYSQGIRLR*PGWRRV Trigger: AACTCGTCTCCACCCTGGGCAGCGGAGCCTGATCCC...CTGAGAGTAAATGAAGACATTGTGACCCTTGTGACTTCTGGGGTTGCCTGCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR GCA 90 bp | GGATCGGAGTGTGAATATGGAGCGTTCTTCTCTGCTGAGTGGAGATGTCTTGCCGTCTCCAGGGACAGCTaGAGTGTCACTGGCTGGGTG | + |
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Preference number: 4 (lower is better) Translates to: GSECEYGAFFSAEWRCLAVSRDS*SVTGWV Trigger: CACCCAGCCAGTGACACTGCAGCTGTCCCTGGAGAC...GGCAAGACATCTCCACTCAGCAGAGAAGAACGCTCCATATTCACACTCCGATCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR CCA 90 bp | GCAGCAGGCAACCCCAGAAGTCACAAGGGTCACAATGTCTTCATTTACTCTCAGGAGCTGCGAAGACCGTaGCCACACCCACTGCTGCTC | + |
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Preference number: 4 (lower is better) Translates to: AAGNPRSHKGHNVFIYSQELRRP*PHPLLL Trigger: GAGCAGCAGTGGGTGTGGCCACGGTCTTCGCAGCTC...CTGAGAGTAAATGAAGACATTGTGACCCTTGTGACTTCTGGGGTTGCCTGCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR CCA 90 bp | TACTCTCAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTGCTGAGCTGCGAAGACCGTaGCCACACCCACTGCTGCTC | + |
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Preference number: 4 (lower is better) Translates to: YSQLLQGSECEYGAFFSAELRRP*PHPLLL Trigger: GAGCAGCAGTGGGTGTGGCCACGGTCTTCGCAGCTC...AGCAGAGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAGCTGAGAGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR CCA 90 bp | GCGTTCTTCTCTGCTGAGTGGAGATGTCTTGCCGGGCTGAGAGATCCCAGATCCCAGCAGGGATGGGGATaGTGGTTGCCAAAATCAGCA | + |
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Preference number: 4 (lower is better) Translates to: AFFSAEWRCLAGLRDPRSQQGWG*WLPKSA Trigger: TGCTGATTTTGGCAACCACCATCCCCATCCCTGCTG...GGATCTGGGATCTCTCAGCCCGGCAAGACATCTCCACTCAGCAGAGAAGAACGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR CCA 90 bp | GTCTTCATTTACTCTCAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCACAGGGCTGCTGGCCTaGAGCCCAGGAAGCTGGCTC | + |
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Preference number: 4 (lower is better) Translates to: VFIYSQLLQGSECEYGAFTGLLA*SPGSWL Trigger: GAGCCAGCTTCCTGGGCTCCAGGCCAGCAGCCCTGT...GAACGCTCCATATTCACACTCCGATCCCTGAAGGAGCTGAGAGTAAATGAAGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR TCA 90 bp | GAATATGGAGCGTTCTTCTCTGCTGAGTGGAGATGTCTTGCCGGGCTGAGAGATCACAGCAGCCAGGGCTaGGTACAAGGGTTTGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: EYGAFFSAEWRCLAGLRDHSSQG*VQGFAG Trigger: ACCAGCAAACCCTTGTACTCAGCCCTGGCTGCTGTG...ATCTCTCAGCCCGGCAAGACATCTCCACTCAGCAGAGAAGAACGCTCCATATTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR TCA 90 bp | TCCAGACATCAGTTTTATTTTTCTCAGAAGCTCCTGGTTAGCAGCAGGCAACCCACAGCCGGGAAGCCATaGAGTGGCCCACACCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: SRHQFYFSQKLLVSSRQPTAGKP*SGPHQG Trigger: CCCCTGGTGTGGGCCACTTCATGGCTTCCCGGCTGT...GGGTTGCCTGCTGCTAACCAGGAGCTTCTGAGAAAAATAAAACTGATGTCTGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR TCA 90 bp | GCGTTCTTCTCTGCTGAGTGGAGATGTCTTGCCGGGCTGAGAGATCCCAGATCCGTCACGAACAGCGTCTaGAGGTTCAGCAGCTCAAAA | + |
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Preference number: 4 (lower is better) Translates to: AFFSAEWRCLAGLRDPRSVTNSV*RFSSSK Trigger: TTTTGAGCTGCTGAACCTTCAGACGCTGTTCGTGAC...GGATCTGGGATCTCTCAGCCCGGCAAGACATCTCCACTCAGCAGAGAAGAACGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 ENSMUST00000135486.8 |
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| CDS-3UTR GCA 90 bp | GTCTTCATTTACTCTCAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCCCCCCTGGATGTTTCTaGGGATGCGTGGGCATGGCC | + |
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Preference number: 4 (lower is better) Translates to: VFIYSQLLQGSECEYGAFPPGCF*GCVGMA Trigger: GGCCATGCCCACGCATCCGCAGAAACATCCAGGGGG...GAACGCTCCATATTCACACTCCGATCCCTGAAGGAGCTGAGAGTAAATGAAGAC 54% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR GCA 90 bp | GGCTCCAGACATCAGTTTTATTTTTCTCAGAAGCTCCTGGTTAGCAGCAGGCAAGAAGGCAGCAGCACCTaGCAGAGCATAGGCCCCGGG | + |
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Preference number: 4 (lower is better) Translates to: GSRHQFYFSQKLLVSSRQEGSST*QSIGPG Trigger: CCCGGGGCCTATGCTCTGGCAGGTGCTGCTGCCTTC...TTGCCTGCTGCTAACCAGGAGCTTCTGAGAAAAATAAAACTGATGTCTGGAGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR GCA 90 bp | GGAGCGTTCTTCTCTGCTGAGTGGAGATGTCTTGCCGGGCTGAGAGATCCCAGATCAGTCTGGAGGGCTTaGACCAAGTGGGTCCTTTTT | + |
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Preference number: 4 (lower is better) Translates to: GAFFSAEWRCLAGLRDPRSVWRA*TKWVLF Trigger: AAAAAGGACCCACTTGGTGCAAGCCCTCCAGACTGA...TCTGGGATCTCTCAGCCCGGCAAGACATCTCCACTCAGCAGAGAAGAACGCTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 ENSMUST00000135486.8 |
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| CDS-3UTR CCA 90 bp | TACTCTCAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTGCTCGGGAAGCCATGAAGTaGCCCACACCAGGGGGATAC | + |
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Preference number: 4 (lower is better) Translates to: YSQLLQGSECEYGAFFSAREAMK*PTPGGY Trigger: GTATCCCCCTGGTGTGGGCCACTTCATGGCTTCCCG...AGCAGAGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAGCTGAGAGTA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR CCA 90 bp | AGGCAACCCCAGAAGTCACAAGGGTCACAATGTCTTCATTTACTCTCAGCTCCTGTGTGTCTGCTGGCCTaGAGCCCAGGAAGCTGGCTC | + |
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Preference number: 4 (lower is better) Translates to: RQPQKSQGSQCLHLLSAPVCLLA*SPGSWL Trigger: GAGCCAGCTTCCTGGGCTCCAGGCCAGCAGACACAC...AGGAGCTGAGAGTAAATGAAGACATTGTGACCCTTGTGACTTCTGGGGTTGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135486.8 |
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| CDS-3UTR GCA 90 bp | CAGCAGGCAACCCCAGAAGTCACAAGGGTCACAATGTCTTCATTTACTCTCAGCGGCCCCCAGAGTTCTTaGAGTGGCACTGGCTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: QQATPEVTRVTMSSFTLSGPQSS*SGTGFL Trigger: CAAGAAGCCAGTGCCACTGCAAGAACTCTGGGGGCC...GCTGAGAGTAAATGAAGACATTGTGACCCTTGTGACTTCTGGGGTTGCCTGCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR GCA 90 bp | TCATTTACTCTCAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCCCCCTGGATGTTTCTaGGGATGCGTGGGCATGGCC | + |
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Preference number: 4 (lower is better) Translates to: SFTLSSFRDRSVNMERSSPPGCF*GCVGMA Trigger: GGCCATGCCCACGCATCCGCAGAAACATCCAGGGGG...AGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAGCTGAGAGTAAATGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR GCA 90 bp | CAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTGCTGAGTGGCCATTTCTTTGGTCTTaGTCTCAGGTTCCCCGACGG | + |
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Preference number: 4 (lower is better) Translates to: QLLQGSECEYGAFFSAEWPFLWS*SQVPRR Trigger: CCGTCGGGGAACCTGAGAGCAAGACCAAAGAAATGG...CCACTCAGCAGAGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR GCA 90 bp | CAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTGCTGAGTGGAACAGTGTCTCCAAATaGTCCGACATGGACAGCCGG | + |
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Preference number: 4 (lower is better) Translates to: QLLQGSECEYGAFFSAEWNSVSK*SDMDSR Trigger: CCGGCTGTCCATGTCGGAGCATTTGGAGACACTGTT...CCACTCAGCAGAGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR GCA 90 bp | TTTACTCTCAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTGTGCCTCCAGCCACAATaGCCTCTGGGAAGGCGACAG | + |
|
Preference number: 4 (lower is better) Translates to: FTLSSFRDRSVNMERSSLCLQPQ*PLGRRQ Trigger: CTGTCGCCTTCCCAGAGGGCATTGTGGCTGGAGGCA...CAGAGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAGCTGAGAGTAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR GCA 90 bp | TCATTTACTCTCAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTTCCTGGAGACAGGGCTaGTGGCCTGGAGCCCAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: SFTLSSFRDRSVNMERSSSWRQG*WPGAQE Trigger: TTCCTGGGCTCCAGGCCAGCAGCCCTGTCTCCAGGA...AGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAGCTGAGAGTAAATGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CCA 90 bp | GAATATGGAGCGTTCTTCTCTGCTGAGTGGAGATGTCTTGCCGGGCTGAGAGATCCAGAGTTCTTGCAGTaGCACTGGCTTCTTGGAGGC | + |
|
Preference number: 4 (lower is better) Translates to: EYGAFFSAEWRCLAGLRDPEFLQ*HWLLGG Trigger: GCCTCCAAGAAGCCAGTGCCACTGCAAGAACTCTGG...ATCTCTCAGCCCGGCAAGACATCTCCACTCAGCAGAGAAGAACGCTCCATATTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CCA 90 bp | GGAGCGTTCTTCTCTGCTGAGTGGAGATGTCTTGCCGGGCTGAGAGATCCCAGAAAAGACAGTCAACTGTaGGTGACACCACTCCAACCA | + |
|
Preference number: 4 (lower is better) Translates to: GAFFSAEWRCLAGLRDPRKDSQL*VTPLQP Trigger: TGGTTGGAGTGGTGTCACCCACAGTTGACTGTCTTT...TCTGGGATCTCTCAGCCCGGCAAGACATCTCCACTCAGCAGAGAAGAACGCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CCA 90 bp | CCCCAGAAGTCACAAGGGTCACAATGTCTTCATTTACTCTCAGCTCCTTCAGGGAGGTTGTGTGTCTGCTaGCCTGGAGCCCAGGAAGCT | + |
|
Preference number: 4 (lower is better) Translates to: PQKSQGSQCLHLLSAPSGRLCVC*PGAQEA Trigger: AGCTTCCTGGGCTCCAGGCCAGCAGACACACAACCT...CCCTGAAGGAGCTGAGAGTAAATGAAGACATTGTGACCCTTGTGACTTCTGGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135486.8 |
||
| CDS-3UTR TCA 90 bp | CAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTGCTGAGTGGGTCACGAACAGCGTCTaGAGGTTCAGCAGCTCAAAA | + |
|
Preference number: 4 (lower is better) Translates to: QLLQGSECEYGAFFSAEWVTNSV*RFSSSK Trigger: TTTTGAGCTGCTGAACCTTCAGACGCTGTTCGTGAC...CCACTCAGCAGAGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 ENSMUST00000135486.8 |
||
| CDS-3UTR TCA 90 bp | TTCTTCTCTGCTGAGTGGAGATGTCTTGCCGGGCTGAGAGATCCCAGATCCATGGTCACGAACAGCGTCTaGAGGTTCAGCAGCTCAAAA | + |
|
Preference number: 4 (lower is better) Translates to: FFSAEWRCLAGLRDPRSMVTNSV*RFSSSK Trigger: TTTTGAGCTGCTGAACCTTCAGACGCTGTTCGTGAC...CATGGATCTGGGATCTCTCAGCCCGGCAAGACATCTCCACTCAGCAGAGAAGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 ENSMUST00000135486.8 |
||
| CDS-3UTR GCA 90 bp | TCCAGACATCAGTTTTATTTTTCTCAGAAGCTCCTGGTTAGCAGCAGGCAACCCCCAGGAAGATGGTACTaGCTGTGGCCAGGGTGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: SRHQFYFSQKLLVSSRQPPGRWY*LWPGCR Trigger: CCTGCACCCTGGCCACAGGCAGTACCATCTTCCTGG...GGGTTGCCTGCTGCTAACCAGGAGCTTCTGAGAAAAATAAAACTGATGTCTGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR GCA 90 bp | CTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTGCTGAGTGGAGAAACAGTGTCTCCAAATaGTCCGACATGGACAGCCGG | + |
|
Preference number: 4 (lower is better) Translates to: LLQGSECEYGAFFSAEWRNSVSK*SDMDSR Trigger: CCGGCTGTCCATGTCGGAGCATTTGGAGACACTGTT...TCTCCACTCAGCAGAGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR GCA 90 bp | TTTATTTTTCTCAGAAGCTCCTGGTTAGCAGCAGGCAACCCCAGAAGTCACAAGTGCCTCCAGCCACAATaGCCTCTGGGAAGGCGACAG | + |
|
Preference number: 4 (lower is better) Translates to: FIFLRSSWLAAGNPRSHKCLQPQ*PLGRRQ Trigger: CTGTCGCCTTCCCAGAGGGCATTGTGGCTGGAGGCA...CTTGTGACTTCTGGGGTTGCCTGCTGCTAACCAGGAGCTTCTGAGAAAAATAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CCA 90 bp | TACTCTCAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTGCTCCAGAGTTCTTGCAGTaGCACTGGCTTCTTGGAGGC | + |
|
Preference number: 4 (lower is better) Translates to: YSQLLQGSECEYGAFFSAPEFLQ*HWLLGG Trigger: GCCTCCAAGAAGCCAGTGCCACTGCAAGAACTCTGG...AGCAGAGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAGCTGAGAGTA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CCA 90 bp | CACAATGTCTTCATTTACTCTCAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCGGATGCGTGGGCATaGCCCCCAGAGTTCTTGCAG | + |
|
Preference number: 4 (lower is better) Translates to: HNVFIYSQLLQGSECEYGADAWA*PPEFLQ Trigger: CTGCAAGAACTCTGGGGGCCATGCCCACGCATCCGC...TCCATATTCACACTCCGATCCCTGAAGGAGCTGAGAGTAAATGAAGACATTGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CCA 90 bp | CTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTGCTGAGTGGAGAATTTTCCCAGGAAGATaGTACTGCCTGTGGCCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: LLQGSECEYGAFFSAEWRIFPGR*YCLWPG Trigger: CCCTGGCCACAGGCAGTACCATCTTCCTGGGAAAAT...TCTCCACTCAGCAGAGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CCA 90 bp | TACTCTCAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTGCTTCAGGATGCCACAGATaGCCCCCAGGGCCACAAAAA | + |
|
Preference number: 4 (lower is better) Translates to: YSQLLQGSECEYGAFFSASGCHR*PPGPQK Trigger: TTTTTGTGGCCCTGGGGGCCATCTGTGGCATCCTGA...AGCAGAGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAGCTGAGAGTA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR TCA 90 bp | ACTCTCAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTGCTGTCTCCTGTTCATTGTTaGAGACTGCCAGGAGGTGGA | + |
|
Preference number: 4 (lower is better) Translates to: TLSSFRDRSVNMERSSLLSPVHC*RLPGGG Trigger: TCCACCTCCTGGCAGTCTTCAACAATGAACAGGAGA...CAGCAGAGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAGCTGAGAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR TCA 90 bp | GCAGGCAACCCCAGAAGTCACAAGGGTCACAATGTCTTCATTTACTCTCAGCTCGCGCAGTTCATGAAGTaGCCCACAGTTACAGAGTGG | + |
|
Preference number: 4 (lower is better) Translates to: AGNPRSHKGHNVFIYSQLAQFMK*PTVTEW Trigger: CCACTCTGTAACTGTGGGTCACTTCATGAACTGCGC...GAGCTGAGAGTAAATGAAGACATTGTGACCCTTGTGACTTCTGGGGTTGCCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR GCA 90 bp | GCAGCAGGCAACCCCAGAAGTCACAAGGGTCACAATGTCTTCATTTACTCTCAGAGGTTGTGTGTCTCATaGAAGGAGGTCTCCAGGGAC | + |
|
Preference number: 4 (lower is better) Translates to: AAGNPRSHKGHNVFIYSQRLCVS*KEVSRD Trigger: GTCCCTGGAGACCTCCTTGCATGAGACACACAACCT...CTGAGAGTAAATGAAGACATTGTGACCCTTGTGACTTCTGGGGTTGCCTGCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR GCA 90 bp | GCAGGCAACCCCAGAAGTCACAAGGGTCACAATGTCTTCATTTACTCTCAGCTCAGGTTGTGTGTCTCATaGAAGGAGGTCTCCAGGGAC | + |
|
Preference number: 4 (lower is better) Translates to: AGNPRSHKGHNVFIYSQLRLCVS*KEVSRD Trigger: GTCCCTGGAGACCTCCTTGCATGAGACACACAACCT...GAGCTGAGAGTAAATGAAGACATTGTGACCCTTGTGACTTCTGGGGTTGCCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CCA 90 bp | ATTTACTCTCAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTTTCTTGCAGTGGCACTaGCTTCTTGGAGGCGCCCTC | + |
|
Preference number: 4 (lower is better) Translates to: IYSQLLQGSECEYGAFFSFLQWH*LLGGAL Trigger: GAGGGCGCCTCCAAGAAGCCAGTGCCACTGCAAGAA...AGAGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAGCTGAGAGTAAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CCA 90 bp | CAGGCAACCCCAGAAGTCACAAGGGTCACAATGTCTTCATTTACTCTCAGCTCCCCACTCCGGTCAAGATaGTCTTCACCTCAGGGATTC | + |
|
Preference number: 4 (lower is better) Translates to: QATPEVTRVTMSSFTLSSPLRSR*SSPQGF Trigger: GAATCCCTGAGGTGAAGACCATCTTGACCGGAGTGG...GGAGCTGAGAGTAAATGAAGACATTGTGACCCTTGTGACTTCTGGGGTTGCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CCA 90 bp | CAGCAGGCAACCCCAGAAGTCACAAGGGTCACAATGTCTTCATTTACTCTCAGCAAGACTGCCAGGAGGTaGAACATAAAGGCCCCACAG | + |
|
Preference number: 4 (lower is better) Translates to: QQATPEVTRVTMSSFTLSKTARR*NIKAPQ Trigger: CTGTGGGGCCTTTATGTTCCACCTCCTGGCAGTCTT...GCTGAGAGTAAATGAAGACATTGTGACCCTTGTGACTTCTGGGGTTGCCTGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CCA 90 bp | TACTCTCAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTGCTAAGACTGCCAGGAGGTaGAACATAAAGGCCCCACAG | + |
|
Preference number: 4 (lower is better) Translates to: YSQLLQGSECEYGAFFSAKTARR*NIKAPQ Trigger: CTGTGGGGCCTTTATGTTCCACCTCCTGGCAGTCTT...AGCAGAGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAGCTGAGAGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CCA 90 bp | GCAGGCAACCCCAGAAGTCACAAGGGTCACAATGTCTTCATTTACTCTCAGCTCTTAGCCAAGATATCCTaGAGACAGGGCTGCTGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: AGNPRSHKGHNVFIYSQLLAKIS*RQGCWP Trigger: AGGCCAGCAGCCCTGTCTCCAGGATATCTTGGCTAA...GAGCTGAGAGTAAATGAAGACATTGTGACCCTTGTGACTTCTGGGGTTGCCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR TCA 90 bp | ACAATGTCTTCATTTACTCTCAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCACAGCAGCCAGGGCTaGGTACAAGGGTTTGCTGGT | + |
|
Preference number: 4 (lower is better) Translates to: TMSSFTLSSFRDRSVNMEHSSQG*VQGFAG Trigger: ACCAGCAAACCCTTGTACTCAGCCCTGGCTGCTGTG...CTCCATATTCACACTCCGATCCCTGAAGGAGCTGAGAGTAAATGAAGACATTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR GCA 90 bp | TCATTTACTCTCAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTACCCACTGCTGCTCCTaGGGCCAACAGTTCCATTTC | + |
|
Preference number: 4 (lower is better) Translates to: SFTLSSFRDRSVNMERSSTHCCS*GQQFHF Trigger: GAAATGGAACTGTTGGCCGCAGGAGCAGCAGTGGGT...AGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAGCTGAGAGTAAATGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR GCA 90 bp | GCAGCAGGCAACCCCAGAAGTCACAAGGGTCACAATGTCTTCATTTACTCTCAGTCAGTCTGGAGGGCTTaGACCAAGTGGGTCCTTTTT | + |
|
Preference number: 4 (lower is better) Translates to: AAGNPRSHKGHNVFIYSQSVWRA*TKWVLF Trigger: AAAAAGGACCCACTTGGTGCAAGCCCTCCAGACTGA...CTGAGAGTAAATGAAGACATTGTGACCCTTGTGACTTCTGGGGTTGCCTGCTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 ENSMUST00000135486.8 |
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| CDS-3UTR CCA 90 bp | CTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTGCTGAGTGGAGAAAAGACAGTCAACTGTaGGTGACACCACTCCAACCA | + |
|
Preference number: 4 (lower is better) Translates to: LLQGSECEYGAFFSAEWRKDSQL*VTPLQP Trigger: TGGTTGGAGTGGTGTCACCCACAGTTGACTGTCTTT...TCTCCACTCAGCAGAGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CCA 90 bp | AGGCAACCCCAGAAGTCACAAGGGTCACAATGTCTTCATTTACTCTCAGCTCCTCAGCAGGGATGGGGATaGTGGTTGCCAAAATCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: RQPQKSQGSQCLHLLSAPQQGWG*WLPKSA Trigger: TGCTGATTTTGGCAACCACCATCCCCATCCCTGCTG...AGGAGCTGAGAGTAAATGAAGACATTGTGACCCTTGTGACTTCTGGGGTTGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR TCA 90 bp | CAACCCCAGAAGTCACAAGGGTCACAATGTCTTCATTTACTCTCAGCTCCTTCAGCGCAGTTCATGAAGTaGCCCACAGTTACAGAGTGG | + |
|
Preference number: 4 (lower is better) Translates to: QPQKSQGSQCLHLLSAPSAQFMK*PTVTEW Trigger: CCACTCTGTAACTGTGGGTCACTTCATGAACTGCGC...TGAAGGAGCTGAGAGTAAATGAAGACATTGTGACCCTTGTGACTTCTGGGGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR GCA 90 bp | TTTATTTTTCTCAGAAGCTCCTGGTTAGCAGCAGGCAACCCCAGAAGTCACAAGCCATTTCTTTGGTCTTaGTCTCAGGTTCCCCGACGG | + |
|
Preference number: 4 (lower is better) Translates to: FIFLRSSWLAAGNPRSHKPFLWS*SQVPRR Trigger: CCGTCGGGGAACCTGAGAGCAAGACCAAAGAAATGG...CTTGTGACTTCTGGGGTTGCCTGCTGCTAACCAGGAGCTTCTGAGAAAAATAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CCA 90 bp | GGCTCCAGACATCAGTTTTATTTTTCTCAGAAGCTCCTGGTTAGCAGCAGGCAACCACTCCGGTCAAGATaGTCTTCACCTCAGGGATTC | + |
|
Preference number: 4 (lower is better) Translates to: GSRHQFYFSQKLLVSSRQPLRSR*SSPQGF Trigger: GAATCCCTGAGGTGAAGACCATCTTGACCGGAGTGG...TTGCCTGCTGCTAACCAGGAGCTTCTGAGAAAAATAAAACTGATGTCTGGAGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
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| CDS-3UTR CCA 90 bp | TCATTTACTCTCAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTATTTTCCCAGGAAGATaGTACTGCCTGTGGCCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: SFTLSSFRDRSVNMERSSIFPGR*YCLWPG Trigger: CCCTGGCCACAGGCAGTACCATCTTCCTGGGAAAAT...AGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAGCTGAGAGTAAATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CCA 90 bp | ACAATGTCTTCATTTACTCTCAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGTCAGGATGCCACAGATaGCCCCCAGGGCCACAAAAA | + |
|
Preference number: 4 (lower is better) Translates to: TMSSFTLSSFRDRSVNMESGCHR*PPGPQK Trigger: TTTTTGTGGCCCTGGGGGCCATCTGTGGCATCCTGA...CTCCATATTCACACTCCGATCCCTGAAGGAGCTGAGAGTAAATGAAGACATTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CCA 90 bp | TCATTTACTCTCAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTTTAGCCAAGATATCCTaGAGACAGGGCTGCTGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: SFTLSSFRDRSVNMERSSLAKIS*RQGCWP Trigger: AGGCCAGCAGCCCTGTCTCCAGGATATCTTGGCTAA...AGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAGCTGAGAGTAAATGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR GCA 90 bp | GGCTCCAGACATCAGTTTTATTTTTCTCAGAAGCTCCTGGTTAGCAGCAGGCAAATCATCACGCTCAGGTaGACGAAGGGACCCAATTTT | + |
|
Preference number: 4 (lower is better) Translates to: GSRHQFYFSQKLLVSSRQIITLR*TKGPNF Trigger: AAAATTGGGTCCCTTCGTGCACCTGAGCGTGATGAT...TTGCCTGCTGCTAACCAGGAGCTTCTGAGAAAAATAAAACTGATGTCTGGAGCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR GCA 90 bp | CCCCAGAAGTCACAAGGGTCACAATGTCTTCATTTACTCTCAGCTCCTTCAGGGGTTCTTAGTCATCAGTaGCCAGGAGTTGTTGTCAAA | + |
|
Preference number: 4 (lower is better) Translates to: PQKSQGSQCLHLLSAPSGVLSHQ*PGVVVK Trigger: TTTGACAACAACTCCTGGGCACTGATGACTAAGAAC...CCCTGAAGGAGCTGAGAGTAAATGAAGACATTGTGACCCTTGTGACTTCTGGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR GCA 90 bp | ACAATGTCTTCATTTACTCTCAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGTCAGTCTGGAGGGCTTaGACCAAGTGGGTCCTTTTT | + |
|
Preference number: 4 (lower is better) Translates to: TMSSFTLSSFRDRSVNMESVWRA*TKWVLF Trigger: AAAAAGGACCCACTTGGTGCAAGCCCTCCAGACTGA...CTCCATATTCACACTCCGATCCCTGAAGGAGCTGAGAGTAAATGAAGACATTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 ENSMUST00000135486.8 |
||
| CDS-3UTR GCA 90 bp | AGGCAACCCCAGAAGTCACAAGGGTCACAATGTCTTCATTTACTCTCAGCTCCTGTTCTTAGTCATCAGTaGCCAGGAGTTGTTGTCAAA | + |
|
Preference number: 4 (lower is better) Translates to: RQPQKSQGSQCLHLLSAPVLSHQ*PGVVVK Trigger: TTTGACAACAACTCCTGGGCACTGATGACTAAGAAC...AGGAGCTGAGAGTAAATGAAGACATTGTGACCCTTGTGACTTCTGGGGTTGCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR GCA 90 bp | GTCTTCATTTACTCTCAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCATTGTTGAAGACTaGCAGGAGGTGGAACATAAA | + |
|
Preference number: 4 (lower is better) Translates to: VFIYSQLLQGSECEYGAFFIVED*QEVEHK Trigger: TTTATGTTCCACCTCCTGGCAGTCTTCAACAATGAA...GAACGCTCCATATTCACACTCCGATCCCTGAAGGAGCTGAGAGTAAATGAAGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR GCA 90 bp | TTTATTTTTCTCAGAAGCTCCTGGTTAGCAGCAGGCAACCCCAGAAGTCACAAGTTCATTGTTGAAGACTaGCAGGAGGTGGAACATAAA | + |
|
Preference number: 4 (lower is better) Translates to: FIFLRSSWLAAGNPRSHKFIVED*QEVEHK Trigger: TTTATGTTCCACCTCCTGGCAGTCTTCAACAATGAA...CTTGTGACTTCTGGGGTTGCCTGCTGCTAACCAGGAGCTTCTGAGAAAAATAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS GCA 90 bp | CCCTGGATGTTTCTGCGGATGCGTGGGCATGGCCCCCAGAGTTCTTaGAGTGGCACTGGCTTCTTGGAGGCGCCCTCACGAAGCCCCACT | + |
|
Preference number: 5 (lower is better) Translates to: PWMFLRMRGHGPQSS*SGTGFLEAPSRSPT Trigger: AGTGGGGCTTCGTGAGGGCGCCTCCAAGAAGCCAGTGCCACTGCAAGAACTCTGGGGGCCATGCCCACGCATCCGCAGAAACATCCAGGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS GCA 90 bp | CACCCACTGCTGCTCCTGCGGCCAACAGTTCCATTTCTTTGGTCTTaGTCTCAGGTTCCCCGACGGTCTTGGTGCGCACGCGGCCCAGGT | + |
|
Preference number: 5 (lower is better) Translates to: HPLLLLRPTVPFLWS*SQVPRRSWCARGPG Trigger: ACCTGGGCCGCGTGCGCACCAAGACCGTCGGGGAACCTGAGAGCAAGACCAAAGAAATGGAACTGTTGGCCGCAGGAGCAGCAGTGGGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS GCA 90 bp | GCTGATGGGAGCTGCGAAGACCGTGGCCACACCCACTGCTGCTCCTaGGGCCAACAGTTCCATTTCTTTGGTCTTGCTCTCAGGTTCCCC | + |
|
Preference number: 5 (lower is better) Translates to: ADGSCEDRGHTHCCS*GQQFHFFGLALRFP Trigger: GGGGAACCTGAGAGCAAGACCAAAGAAATGGAACTGTTGGCCGCAGGAGCAGCAGTGGGTGTGGCCACGGTCTTCGCAGCTCCCATCAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS CCA 90 bp | AGGTTGTGTGTCTGCTGGCCTGGAGCCCAGGAAGCTGGCTCAGTCTaGAGGGCTTGCACCAAGTGGGTCCTTTTTACAACGCCCACCAGG | + |
|
Preference number: 5 (lower is better) Translates to: RLCVCWPGAQEAGSV*RACTKWVLFTTPTR Trigger: CCTGGTGGGCGTTGTAAAAAGGACCCACTTGGTGCAAGCCCTCCAGACTGAGCCAGCTTCCTGGGCTCCAGGCCAGCAGACACACAACCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135486.8 |
||
| CDS-3UTR CAA 90 bp | GCGTTCTTCTCTGCTGAGTGGAGATGTCTTGCCGGGCTGAGAGATCCCAGATCCAGTGGCACTGGCTTCTaGGAGGCGCCCTCACGAAGC | + |
|
Preference number: 5 (lower is better) Translates to: AFFSAEWRCLAGLRDPRSSGTGF*EAPSRS Trigger: GCTTCGTGAGGGCGCCTCCAAGAAGCCAGTGCCACT...GGATCTGGGATCTCTCAGCCCGGCAAGACATCTCCACTCAGCAGAGAAGAACGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS TCA 90 bp | ACCAGGGGGATACGTGATGGAAGCCAGGACCACAGCAGCCAGGGCTaGGTACAAGGGTTTGCTGGTAGCCAGCAGTTTGGAGGTGAACCC | + |
|
Preference number: 5 (lower is better) Translates to: TRGIRDGSQDHSSQG*VQGFAGSQQFGGEP Trigger: GGGTTCACCTCCAAACTGCTGGCTACCAGCAAACCCTTGTACTCAGCCCTGGCTGCTGTGGTCCTGGCTTCCATCACGTATCCCCCTGGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS CCA 90 bp | AGTGTCTCCAAATGCTCCGACATGGACAGCCGGGAAGCCATGAAGTaGCCCACACCAGGGGGATACGTGATGGAAGCCAGGACCACAGCA | + |
|
Preference number: 5 (lower is better) Translates to: SVSKCSDMDSREAMK*PTPGGYVMEARTTA Trigger: TGCTGTGGTCCTGGCTTCCATCACGTATCCCCCTGGTGTGGGCCACTTCATGGCTTCCCGGCTGTCCATGTCGGAGCATTTGGAGACACT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CAA 90 bp | GCGTTCTTCTCTGCTGAGTGGAGATGTCTTGCCGGGCTGAGAGATCCCAGATCCTCCCTGTACAGCCACTaGTGTGCTCTGACCACGCGC | + |
|
Preference number: 5 (lower is better) Translates to: AFFSAEWRCLAGLRDPRSSLYSH*CALTTR Trigger: GCGCGTGGTCAGAGCACACAAGTGGCTGTACAGGGA...GGATCTGGGATCTCTCAGCCCGGCAAGACATCTCCACTCAGCAGAGAAGAACGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CAA 90 bp | GAATATGGAGCGTTCTTCTCTGCTGAGTGGAGATGTCTTGCCGGGCTGAGAGATAGTGGCACTGGCTTCTaGGAGGCGCCCTCACGAAGC | + |
|
Preference number: 5 (lower is better) Translates to: EYGAFFSAEWRCLAGLRDSGTGF*EAPSRS Trigger: GCTTCGTGAGGGCGCCTCCAAGAAGCCAGTGCCACT...ATCTCTCAGCCCGGCAAGACATCTCCACTCAGCAGAGAAGAACGCTCCATATTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CAA 90 bp | GAGTGGAGATGTCTTGCCGGGCTGAGAGATCCCAGATCCATGGCAGCTGAGCAGTTGGGGGCAGGAGGATaGGTCAGGGTTGAAATTGCT | + |
|
Preference number: 5 (lower is better) Translates to: EWRCLAGLRDPRSMAAEQLGAGG*VRVEIA Trigger: AGCAATTTCAACCCTGACCAATCCTCCTGCCCCCAA...CTGCTCAGCTGCCATGGATCTGGGATCTCTCAGCCCGGCAAGACATCTCCACTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000135486.8 |
||
| CDS CCA 90 bp | CAGCTCAAAAAGGTTGTGTGTCTGCTGGCCTGGAGCCCAGGAAGCTaGCTCAGTCTGGAGGGCTTGCACCAAGTGGGTCCTTTTTACAAC | + |
|
Preference number: 5 (lower is better) Translates to: QLKKVVCLLAWSPGS*LSLEGLHQVGPFYN Trigger: GTTGTAAAAAGGACCCACTTGGTGCAAGCCCTCCAGACTGAGCCAGCTTCCTGGGCTCCAGGCCAGCAGACACACAACCTTTTTGAGCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000135486.8 |
||
| CDS-3UTR CAA 90 bp | CAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTGCTGAGTGGAGATGTCTTCCGGGCATGATGGGATaGACCCTGCCTCCAGCCACA | + |
|
Preference number: 5 (lower is better) Translates to: QGSECEYGAFFSAEWRCLPGMMG*TLPPAT Trigger: TGTGGCTGGAGGCAGGGTCAATCCCATCATGCCCGG...AAGACATCTCCACTCAGCAGAGAAGAACGCTCCATATTCACACTCCGATCCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CAA 90 bp | GCAGGCAACCCCAGAAGTCACAAGGGTCACAATGTCTTCATTTACTCTCAGCTCTCCAGGGGCATGTCCTaGGCCAGTGTAGTGAGGGCG | + |
|
Preference number: 5 (lower is better) Translates to: AGNPRSHKGHNVFIYSQLSRGMS*ASVVRA Trigger: CGCCCTCACTACACTGGCCAAGGACATGCCCCTGGA...GAGCTGAGAGTAAATGAAGACATTGTGACCCTTGTGACTTCTGGGGTTGCCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CAA 90 bp | CAGGCAACCCCAGAAGTCACAAGGGTCACAATGTCTTCATTTACTCTCAGCTCCTCCAGGGGCATGTCCTaGGCCAGTGTAGTGAGGGCG | + |
|
Preference number: 5 (lower is better) Translates to: QATPEVTRVTMSSFTLSSSRGMS*ASVVRA Trigger: CGCCCTCACTACACTGGCCAAGGACATGCCCCTGGA...GGAGCTGAGAGTAAATGAAGACATTGTGACCCTTGTGACTTCTGGGGTTGCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CAA 90 bp | TTTACTCTCAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTGCCGGGCATGATGGGATaGACCCTGCCTCCAGCCACA | + |
|
Preference number: 5 (lower is better) Translates to: FTLSSFRDRSVNMERSSLPGMMG*TLPPAT Trigger: TGTGGCTGGAGGCAGGGTCAATCCCATCATGCCCGG...CAGAGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAGCTGAGAGTAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CAA 90 bp | GCGTTCTTCTCTGCTGAGTGGAGATGTCTTGCCGGGCTGAGAGATCCCAGATCCTGGTCAGGGTTGAAATaGCTTTCTTCAGCTCCACCC | + |
|
Preference number: 5 (lower is better) Translates to: AFFSAEWRCLAGLRDPRSWSGLK*LSSAPP Trigger: GGGTGGAGCTGAAGAAAGCAATTTCAACCCTGACCA...GGATCTGGGATCTCTCAGCCCGGCAAGACATCTCCACTCAGCAGAGAAGAACGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000135486.8 |
||
| CDS GCA 90 bp | TTAGTCATCAGTGCCCAGGAGTTGTTGTCAAACAGTGTCTCCAAATaGTCCGACATGGACAGCCGGGAAGCCATGAAGTGGCCCACACCA | + |
|
Preference number: 5 (lower is better) Translates to: LVISAQELLSNSVSK*SDMDSREAMKWPTP Trigger: TGGTGTGGGCCACTTCATGGCTTCCCGGCTGTCCATGTCGGAGCATTTGGAGACACTGTTTGACAACAACTCCTGGGCACTGATGACTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CAA 90 bp | TTTATTTTTCTCAGAAGCTCCTGGTTAGCAGCAGGCAACCCCAGAAGTCACAAGTCCCTGTACAGCCACTaGTGTGCTCTGACCACGCGC | + |
|
Preference number: 5 (lower is better) Translates to: FIFLRSSWLAAGNPRSHKSLYSH*CALTTR Trigger: GCGCGTGGTCAGAGCACACAAGTGGCTGTACAGGGA...CTTGTGACTTCTGGGGTTGCCTGCTGCTAACCAGGAGCTTCTGAGAAAAATAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CAA 90 bp | CTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTGCTGAGTGGAGATCCATTTCTTTGGTCTaGCTCTCAGGTTCCCCGACG | + |
|
Preference number: 5 (lower is better) Translates to: LLQGSECEYGAFFSAEWRSISLV*LSGSPT Trigger: CGTCGGGGAACCTGAGAGCAAGACCAAAGAAATGGA...TCTCCACTCAGCAGAGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CAA 90 bp | GGATCGGAGTGTGAATATGGAGCGTTCTTCTCTGCTGAGTGGAGATGTCTTGCCTTGGGGGCAGGAGGATaGGTCAGGGTTGAAATTGCT | + |
|
Preference number: 5 (lower is better) Translates to: GSECEYGAFFSAEWRCLALGAGG*VRVEIA Trigger: AGCAATTTCAACCCTGACCAATCCTCCTGCCCCCAA...GGCAAGACATCTCCACTCAGCAGAGAAGAACGCTCCATATTCACACTCCGATCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000135486.8 |
||
| CDS-3UTR CAA 90 bp | AGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTGCTGAGTGGATGGTCAGGGTTGAAATaGCTTTCTTCAGCTCCACCC | + |
|
Preference number: 5 (lower is better) Translates to: SSFRDRSVNMERSSLLSGWSGLK*LSSAPP Trigger: GGGTGGAGCTGAAGAAAGCAATTTCAACCCTGACCA...TCCACTCAGCAGAGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000135486.8 |
||
| CDS-3UTR CAA 90 bp | ATTTACTCTCAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTAGCAGCTCAAAAAGGTaGTGTGTCTGCTGGCCTGGA | + |
|
Preference number: 5 (lower is better) Translates to: IYSQLLQGSECEYGAFFSSSSKR*CVCWPG Trigger: TCCAGGCCAGCAGACACACAACCTTTTTGAGCTGCT...AGAGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAGCTGAGAGTAAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135486.8 |
||
| CDS-3UTR CAA 90 bp | GCAGCAGGCAACCCCAGAAGTCACAAGGGTCACAATGTCTTCATTTACTCTCAGTTGGAGGTGAACCCATaGGCCTTGAGGAAAAATAAG | + |
|
Preference number: 5 (lower is better) Translates to: AAGNPRSHKGHNVFIYSQLEVNP*ALRKNK Trigger: CTTATTTTTCCTCAAGGCCAATGGGTTCACCTCCAA...CTGAGAGTAAATGAAGACATTGTGACCCTTGTGACTTCTGGGGTTGCCTGCTGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CAA 90 bp | ATTTACTCTCAGCTCCTTCAGGGATCGGAGTGTGAATATGGAGCGTTCTTCTCTAGTGCCCAGGAGTTGTaGTCAAACAGTGTCTCCAAA | + |
|
Preference number: 5 (lower is better) Translates to: IYSQLLQGSECEYGAFFSSAQEL*SNSVSK Trigger: TTTGGAGACACTGTTTGACAACAACTCCTGGGCACT...AGAGAAGAACGCTCCATATTCACACTCCGATCCCTGAAGGAGCTGAGAGTAAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CAA 90 bp | TTTATTTTTCTCAGAAGCTCCTGGTTAGCAGCAGGCAACCCCAGAAGTCACAAGTTGGAGGTGAACCCATaGGCCTTGAGGAAAAATAAG | + |
|
Preference number: 5 (lower is better) Translates to: FIFLRSSWLAAGNPRSHKLEVNP*ALRKNK Trigger: CTTATTTTTCCTCAAGGCCAATGGGTTCACCTCCAA...CTTGTGACTTCTGGGGTTGCCTGCTGCTAACCAGGAGCTTCTGAGAAAAATAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS-3UTR CAA 90 bp | CACAATGTCTTCATTTACTCTCAGCTCCTTCAGGGATCGGAGTGTGAATATGGAAGTGCCCAGGAGTTGTaGTCAAACAGTGTCTCCAAA | + |
|
Preference number: 5 (lower is better) Translates to: HNVFIYSQLLQGSECEYGSAQEL*SNSVSK Trigger: TTTGGAGACACTGTTTGACAACAACTCCTGGGCACT...TCCATATTCACACTCCGATCCCTGAAGGAGCTGAGAGTAAATGAAGACATTGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS CCA 72 bp | GCGGATGCGTGGGCATGGCCCCCAGAGTTCTTGCAGTaGCACTGGCTTCTTGGAGGCGCCCTCACGAAGCCC | + |
|
Preference number: 6 (lower is better) Translates to: ADAWAWPPEFLQ*HWLLGGALTKP Trigger: GGGCTTCGTGAGGGCGCCTCCAAGAAGCCAGTGCCACTGCAAGAACTCTGGGGGCCATGCCCACGCATCCGC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS CAA 90 bp | GGGCTGCTGGCCTGGAGCCCAGGAAGCTGGCTCAGTCTGGAGGGCTaGCACCAAGTGGGTCCTTTTTACAACGCCCACCAGGGTCTGAGA | + |
|
Preference number: 6 (lower is better) Translates to: GLLAWSPGSWLSLEG*HQVGPFYNAHQGLR Trigger: TCTCAGACCCTGGTGGGCGTTGTAAAAAGGACCCACTTGGTGCAAGCCCTCCAGACTGAGCCAGCTTCCTGGGCTCCAGGCCAGCAGCCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS GCA 72 bp | CCTGGAGCCCAGGAAGCTGGCTCAGTCTGGAGGGCTTaGACCAAGTGGGTCCTTTTTACAACGCCCACCAGG | + |
|
Preference number: 6 (lower is better) Translates to: PGAQEAGSVWRA*TKWVLFTTPTR Trigger: CCTGGTGGGCGTTGTAAAAAGGACCCACTTGGTGCAAGCCCTCCAGACTGAGCCAGCTTCCTGGGCTCCAGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 ENSMUST00000135486.8 |
||
| CDS CAA 72 bp | CATGGCCCCCAGAGTTCTTGCAGTGGCACTGGCTTCTaGGAGGCGCCCTCACGAAGCCCCACTAATTCCTCC | + |
|
Preference number: 6 (lower is better) Translates to: HGPQSSCSGTGF*EAPSRSPTNSS Trigger: GGAGGAATTAGTGGGGCTTCGTGAGGGCGCCTCCAAGAAGCCAGTGCCACTGCAAGAACTCTGGGGGCCATG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS CAA 72 bp | GCCTGGAGCCCAGGAAGCTGGCTCAGTCTGGAGGGCTaGCACCAAGTGGGTCCTTTTTACAACGCCCACCAG | + |
|
Preference number: 6 (lower is better) Translates to: AWSPGSWLSLEG*HQVGPFYNAHQ Trigger: CTGGTGGGCGTTGTAAAAAGGACCCACTTGGTGCAAGCCCTCCAGACTGAGCCAGCTTCCTGGGCTCCAGGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 ENSMUST00000135486.8 |
||
| CDS CAA 90 bp | TGTCTGCTGGCCTGGAGCCCAGGAAGCTGGCTCAGTCTGGAGGGCTaGCACCAAGTGGGTCCTTTTTACAACGCCCACCAGGGTCTGAGN | + |
|
Preference number: 6 (lower is better) Translates to: CLLAWSPGSWLSLEG*HQVGPFYNAHQGLX Trigger: NCTCAGACCCTGGTGGGCGTTGTAAAAAGGACCCACTTGGTGCAAGCCCTCCAGACTGAGCCAGCTTCCTGGGCTCCAGGCCAGCAGACA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135486.8 |
||
| CDS GCA 72 bp | CTGCTCCTGCGGCCAACAGTTCCATTTCTTTGGTCTTaGTCTCAGGTTCCCCGACGGTCTTGGTGCGCACGC | + |
|
Preference number: 6 (lower is better) Translates to: LLLRPTVPFLWS*SQVPRRSWCAR Trigger: GCGTGCGCACCAAGACCGTCGGGGAACCTGAGAGCAAGACCAAAGAAATGGAACTGTTGGCCGCAGGAGCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS GCA 72 bp | CCACTCCAACCACAGCTTCTGGGGATCAGGCTCCGCTaGCCAGGGTGGAGACGAGTTCTTAGTCATCAGTGC | + |
|
Preference number: 6 (lower is better) Translates to: PLQPQLLGIRLR*PGWRRVLSHQC Trigger: GCACTGATGACTAAGAACTCGTCTCCACCCTGGGCAGCGGAGCCTGATCCCCAGAAGCTGTGGTTGGAGTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS CCA 72 bp | AAATGCTCCGACATGGACAGCCGGGAAGCCATGAAGTaGCCCACACCAGGGGGATACGTGATGGAAGCCAGG | + |
|
Preference number: 6 (lower is better) Translates to: KCSDMDSREAMK*PTPGGYVMEAR Trigger: CCTGGCTTCCATCACGTATCCCCCTGGTGTGGGCCACTTCATGGCTTCCCGGCTGTCCATGTCGGAGCATTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS CCA 72 bp | GTCTGCTGGCCTGGAGCCCAGGAAGCTGGCTCAGTCTaGAGGGCTTGCACCAAGTGGGTCCTTTTTACAACG | + |
|
Preference number: 6 (lower is better) Translates to: VCWPGAQEAGSV*RACTKWVLFTT Trigger: CGTTGTAAAAAGGACCCACTTGGTGCAAGCCCTCCAGACTGAGCCAGCTTCCTGGGCTCCAGGCCAGCAGAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135486.8 |
||
| CDS CCA 72 bp | CCACTGCTGCTCCTGCGGCCAACAGTTCCATTTCTTTaGTCTTGCTCTCAGGTTCCCCGACGGTCTTGGTGC | + |
|
Preference number: 6 (lower is better) Translates to: PLLLLRPTVPFL*SCSQVPRRSWC Trigger: GCACCAAGACCGTCGGGGAACCTGAGAGCAAGACCAAAGAAATGGAACTGTTGGCCGCAGGAGCAGCAGTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS CCA 72 bp | GTTCAGCAGCTCAAAAAGGTTGTGTGTCTGCTGGCCTaGAGCCCAGGAAGCTGGCTCAGTCTGGAGGGCTTG | + |
|
Preference number: 6 (lower is better) Translates to: VQQLKKVVCLLA*SPGSWLSLEGL Trigger: CAAGCCCTCCAGACTGAGCCAGCTTCCTGGGCTCCAGGCCAGCAGACACACAACCTTTTTGAGCTGCTGAAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135486.8 |
||
| CDS CAA 72 bp | CCCACTGCTGCTCCTGCGGCCAACAGTTCCATTTCTTaGGTCTTGCTCTCAGGTTCCCCGACGGTCTTGGTG | + |
|
Preference number: 6 (lower is better) Translates to: PTAAPAANSSIS*VLLSGSPTVLV Trigger: CACCAAGACCGTCGGGGAACCTGAGAGCAAGACCAAAGAAATGGAACTGTTGGCCGCAGGAGCAGCAGTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS TCA 72 bp | ACCAAGTGGGTCCTTTTTACAACGCCCACCAGGGTCTaGGACTCTGTAGTCTCCACCAGGGGGTACTGGGTC | + |
|
Preference number: 6 (lower is better) Translates to: TKWVLFTTPTRV*DSVVSTRGYWV Trigger: GACCCAGTACCCCCTGGTGGAGACTACAGAGTCTCAGACCCTGGTGGGCGTTGTAAAAAGGACCCACTTGGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS GCA 72 bp | GATGGAGGTGATGGTCTCCTGTTCATTGTTGAAGACTaGCAGGAGGTGGAACATAAAGGCCCCACAGGTGGC | + |
|
Preference number: 6 (lower is better) Translates to: DGGDGLLFIVED*QEVEHKGPTGG Trigger: GCCACCTGTGGGGCCTTTATGTTCCACCTCCTGGCAGTCTTCAACAATGAACAGGAGACCATCACCTCCATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS GCA 72 bp | AGTGCCCAGGAGTTGTTGTCAAACAGTGTCTCCAAATaGTCCGACATGGACAGCCGGGAAGCCATGAAGTGG | + |
|
Preference number: 6 (lower is better) Translates to: SAQELLSNSVSK*SDMDSREAMKW Trigger: CCACTTCATGGCTTCCCGGCTGTCCATGTCGGAGCATTTGGAGACACTGTTTGACAACAACTCCTGGGCACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS TCA 72 bp | AAGAAGACTAGTGTCCCAAAGACAGTCAACTGTGGGTaGCACCACTCCAACCACAGCTTCTGGGGATCAGGC | + |
|
Preference number: 6 (lower is better) Translates to: KKTSVPKTVNCG*HHSNHSFWGSG Trigger: GCCTGATCCCCAGAAGCTGTGGTTGGAGTGGTGTCACCCACAGTTGACTGTCTTTGGGACACTAGTCTTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS GCA 72 bp | CGCTGCCCAGGGTGGAGACGAGTTCTTAGTCATCAGTaGCCAGGAGTTGTTGTCAAACAGTGTCTCCAAATG | + |
|
Preference number: 6 (lower is better) Translates to: RCPGWRRVLSHQ*PGVVVKQCLQM Trigger: CATTTGGAGACACTGTTTGACAACAACTCCTGGGCACTGATGACTAAGAACTCGTCTCCACCCTGGGCAGCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS CAA 90 bp | ACAGCAGCCAGGGCTGAGTACAAGGGTTTGCTGGTAGCCAGCAGTTaGGAGGTGAACCCATTGGCCTTGAGGAAAAATAAGAAAGTCCGC | + |
|
Preference number: 6 (lower is better) Translates to: TAARAEYKGLLVASS*EVNPLALRKNKKVR Trigger: GCGGACTTTCTTATTTTTCCTCAAGGCCAATGGGTTCACCTCCAAACTGCTGGCTACCAGCAAACCCTTGTACTCAGCCCTGGCTGCTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS CAA 72 bp | GGAGACGAGTTCTTAGTCATCAGTGCCCAGGAGTTGTaGTCAAACAGTGTCTCCAAATGCTCCGACATGGAC | + |
|
Preference number: 6 (lower is better) Translates to: GDEFLVISAQEL*SNSVSKCSDMD Trigger: GTCCATGTCGGAGCATTTGGAGACACTGTTTGACAACAACTCCTGGGCACTGATGACTAAGAACTCGTCTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||
| CDS CAA 72 bp | GGTGGAGACGAGTTCTTAGTCATCAGTGCCCAGGAGTaGTTGTCAAACAGTGTCTCCAAATGCTCCGACATG | + |
|
Preference number: 6 (lower is better) Translates to: GGDEFLVISAQE*LSNSVSKCSDM Trigger: CATGTCGGAGCATTTGGAGACACTGTTTGACAACAACTCCTGGGCACTGATGACTAAGAACTCGTCTCCACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006378.9 ENSMUST00000105788.2 |
||