Pregenerated sensors for CLCNKA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033770Ensembl transcript IDs: ENSMUST00000042617.14, ENSMUST00000105790.8, ENSMUST00000133676.3
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTGGGCTGGAGGAGTGCGCTCTGTGCAGCATCTaGAGCCCTCAGCTGGGTTCC | + |
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Preference number: 2 (lower is better) Translates to: SWVELADALSSWAGLEECALCSI*SPQLGS Trigger: GGAACCCAGCTGAGGGCTCCAGATGCTGCACAGAGC...GCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| 3UTR-3UTR CCA 90 bp | AAATGTGGAGCCCTGTTCAGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTCTGTGCAGCATCTaGAGCCCTCAGCTGGGTTCC | + |
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Preference number: 2 (lower is better) Translates to: KCGALFSWVELADALSSWALCSI*SPQLGS Trigger: GGAACCCAGCTGAGGGCTCCAGATGCTGCACAGAGC...CCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCTGAACAGGGCTCCACATTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR GCA 90 bp | AGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTGGGCTGGAGGAGTGCCACGCCCACCGCCGCTaGCGCCGACAGCATTTCAAC | + |
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Preference number: 4 (lower is better) Translates to: SWVELADALSSWAGLEECHAHRR*RRQHFN Trigger: GTTGAAATGCTGTCGGCGGCAGCGGCGGTGGGCGTG...GCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CCA 90 bp | AGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTGGGCTGGAGGAGTGCCAGCTGCAGGGTCACTaGCTGTGTGGGGCAGCCACC | + |
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Preference number: 4 (lower is better) Translates to: SWVELADALSSWAGLEECQLQGH*LCGAAT Trigger: GGTGGCTGCCCCACACAGCCAGTGACCCTGCAGCTG...GCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR GCA 90 bp | AGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTGGGCTGGAGGAGTGCCTCCGCCAGCCACAATaGCCTCTGGGAAGGCGACAG | + |
|
Preference number: 4 (lower is better) Translates to: SWVELADALSSWAGLEECLRQPQ*PLGRRQ Trigger: CTGTCGCCTTCCCAGAGGGCATTGTGGCTGGCGGAG...GCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR TCA 90 bp | AGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTGGGCTGGAGGAGTGCATGCCCACCAGGGTCTaGGACTCTCTGGTCTCCACC | + |
|
Preference number: 4 (lower is better) Translates to: SWVELADALSSWAGLEECMPTRV*DSLVST Trigger: GGTGGAGACCAGAGAGTCTCAGACCCTGGTGGGCAT...GCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR GCA 90 bp | AGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTGGGCTGGAGGAGTGCTGCCTAGGAAGATGGTaGTGCCTGTGGCCAGGGTGC | + |
|
Preference number: 4 (lower is better) Translates to: SWVELADALSSWAGLEECCLGRW*CLWPGC Trigger: GCACCCTGGCCACAGGCAGCACCATCTTCCTAGGCA...GCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR GCA 90 bp | AGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTGGGCTGGAGGAGTGCGTCTCTGGGGACAGCTaGAGGGTCACTGGCTGTGTG | + |
|
Preference number: 4 (lower is better) Translates to: SWVELADALSSWAGLEECVSGDS*RVTGCV Trigger: CACACAGCCAGTGACCCTGCAGCTGTCCCCAGAGAC...GCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CCA 90 bp | AGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTGGGCTGGAGGAGTGCAGCCACAATGCCCTCTaGGAAGGCGACAGACAGGGC | + |
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Preference number: 4 (lower is better) Translates to: SWVELADALSSWAGLEECSHNAL*EGDRQG Trigger: GCCCTGTCTGTCGCCTTCCCAGAGGGCATTGTGGCT...GCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR TCA 90 bp | AGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTGGGCTGGAGGAGTGCGGGCGTAATGCTCTGTaGGAAGCCGGAGGAGAAGGA | + |
|
Preference number: 4 (lower is better) Translates to: SWVELADALSSWAGLEECGRNAL*EAGGEG Trigger: TCCTTCTCCTCCGGCTTCTCACAGAGCATTACGCCC...GCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CCA 90 bp | AGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTGGGCTGGAGGAGTGCCTTTGCCTAGGAAGATaGTGCTGCCTGTGGCCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: SWVELADALSSWAGLEECLCLGR*CCLWPG Trigger: CCCTGGCCACAGGCAGCACCATCTTCCTAGGCAAAG...GCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CCA 90 bp | AGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTGGGCTGGAGGAGTGCAAATCGCTCTTGGCCTaGAGCCCAGGAAGCTGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: SWVELADALSSWAGLEECKSLLA*SPGSWL Trigger: CAGCCAGCTTCCTGGGCTCCAGGCCAAGAGCGATTT...GCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR TCA 90 bp | AGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTGGGCTGGAGGAGTGCTCTCCTGTTCACTGTTaGAGACCGCCAGGAGACGGA | + |
|
Preference number: 4 (lower is better) Translates to: SWVELADALSSWAGLEECSPVHC*RPPGDG Trigger: TCCGTCTCCTGGCGGTCTTCAACAGTGAACAGGAGA...GCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR TCA 90 bp | AGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTGGGCTGGAGGAGTGCTGGGGGCTGGTGGGTTaGTCAAGGTGGAAATGGCTT | + |
|
Preference number: 4 (lower is better) Translates to: SWVELADALSSWAGLEECWGLVG*SRWKWL Trigger: AAGCCATTTCCACCTTGATCAACCCACCAGCCCCCA...GCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR GCA 90 bp | AGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTGGGCTGGAGGAGTGCGGGTCCTTTCCACAATaGCCACCAGGGTCTGAGACT | + |
|
Preference number: 4 (lower is better) Translates to: SWVELADALSSWAGLEECGSFPQ*PPGSET Trigger: AGTCTCAGACCCTGGTGGGCATTGTGGAAAGGACCC...GCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CCA 90 bp | AGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTGGGCTGGAGGAGTGCAGGGCTTGCACCAAGTaGGTCCTTTCCACAATGCCC | + |
|
Preference number: 4 (lower is better) Translates to: SWVELADALSSWAGLEECRACTK*VLSTMP Trigger: GGGCATTGTGGAAAGGACCCACTTGGTGCAAGCCCT...GCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CCA 90 bp | AGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTGGGCTGGAGGAGTGCTGGAGAAATCGCTCTTaGCCTGGAGCCCAGGAAGCT | + |
|
Preference number: 4 (lower is better) Translates to: SWVELADALSSWAGLEECWRNRS*PGAQEA Trigger: AGCTTCCTGGGCTCCAGGCCAAGAGCGATTTCTCCA...GCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CCA 90 bp | AAATGTGGAGCCCTGTTCAGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGCAGCTGCAGGGTCACTaGCTGTGTGGGGCAGCCACC | + |
|
Preference number: 4 (lower is better) Translates to: KCGALFSWVELADALSSWQLQGH*LCGAAT Trigger: GGTGGCTGCCCCACACAGCCAGTGACCCTGCAGCTG...CCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCTGAACAGGGCTCCACATTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR TCA 90 bp | AGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTGGGCTGGAGGAGTGCGCATCCAGAACTTCATaGTCAGGAAGAAGGCCAGCG | + |
|
Preference number: 4 (lower is better) Translates to: SWVELADALSSWAGLEECASRTS*SGRRPA Trigger: CGCTGGCCTTCTTCCTGATCATGAAGTTCTGGATGC...GCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR GCA 90 bp | AAATGTGGAGCCCTGTTCAGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGAAGGCAGCAGCACCTaGCAGAGCATAGCCCCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: KCGALFSWVELADALSSWEGSST*QSIAPR Trigger: CCTGGGGGCTATGCTCTGGCAGGTGCTGCTGCCTTC...CCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCTGAACAGGGCTCCACATTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CCA 90 bp | AGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTGGGCTGGAGGAGTGCGAGGGCTGTAAGTTTTaGGAGATGACATTGGCCGCC | + |
|
Preference number: 4 (lower is better) Translates to: SWVELADALSSWAGLEECEGCKF*EMTLAA Trigger: GGCGGCCAATGTCATCTCCCAAAACTTACAGCCCTC...GCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CCA 90 bp | AGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTGGGCTGGAGGAGTGCCCAGCCAAGATGTCCTaGAGAAATCGCTCTTGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: SWVELADALSSWAGLEECPAKMS*RNRSWP Trigger: AGGCCAAGAGCGATTTCTCCAGGACATCTTGGCTGG...GCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR TCA 90 bp | AAATGTGGAGCCCTGTTCAGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGATGCCCACCAGGGTCTaGGACTCTCTGGTCTCCACC | + |
|
Preference number: 4 (lower is better) Translates to: KCGALFSWVELADALSSWMPTRV*DSLVST Trigger: GGTGGAGACCAGAGAGTCTCAGACCCTGGTGGGCAT...CCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCTGAACAGGGCTCCACATTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR GCA 90 bp | AAATGTGGAGCCCTGTTCAGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGTCTCTGGGGACAGCTaGAGGGTCACTGGCTGTGTG | + |
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Preference number: 4 (lower is better) Translates to: KCGALFSWVELADALSSWVSGDS*RVTGCV Trigger: CACACAGCCAGTGACCCTGCAGCTGTCCCCAGAGAC...CCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCTGAACAGGGCTCCACATTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CCA 90 bp | AAATGTGGAGCCCTGTTCAGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGTGGAGCCCAGGAAGCTaGCTGGGTCTGAAGGGCTTG | + |
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Preference number: 4 (lower is better) Translates to: KCGALFSWVELADALSSWWSPGS*LGLKGL Trigger: CAAGCCCTTCAGACCCAGCCAGCTTCCTGGGCTCCA...CCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCTGAACAGGGCTCCACATTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR TCA 90 bp | AAATGTGGAGCCCTGTTCAGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGGGCGTAATGCTCTGTaGGAAGCCGGAGGAGAAGGA | + |
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Preference number: 4 (lower is better) Translates to: KCGALFSWVELADALSSWGRNAL*EAGGEG Trigger: TCCTTCTCCTCCGGCTTCTCACAGAGCATTACGCCC...CCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCTGAACAGGGCTCCACATTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR GCA 90 bp | AGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTGGGCTGGAGGAGTGCTTGTCAAACAGAGAGTaGAAGTGTTCCGCCATGGAC | + |
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Preference number: 4 (lower is better) Translates to: SWVELADALSSWAGLEECLSNRE*KCSAMD Trigger: GTCCATGGCGGAACACTTGCACTCTCTGTTTGACAA...GCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CCA 90 bp | AAATGTGGAGCCCTGTTCAGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGCTTTGCCTAGGAAGATaGTGCTGCCTGTGGCCAGGG | + |
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Preference number: 4 (lower is better) Translates to: KCGALFSWVELADALSSWLCLGR*CCLWPG Trigger: CCCTGGCCACAGGCAGCACCATCTTCCTAGGCAAAG...CCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCTGAACAGGGCTCCACATTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CCA 90 bp | AGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTGGGCTGGAGGAGTGCGCATTTCAACTTCCTTaGCCTTGCTCTCAGTATCCC | + |
|
Preference number: 4 (lower is better) Translates to: SWVELADALSSWAGLEECAFQLP*PCSQYP Trigger: GGGATACTGAGAGCAAGGCCAAGGAAGTTGAAATGC...GCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CCA 90 bp | AAATGTGGAGCCCTGTTCAGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGAAATCGCTCTTGGCCTaGAGCCCAGGAAGCTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: KCGALFSWVELADALSSWKSLLA*SPGSWL Trigger: CAGCCAGCTTCCTGGGCTCCAGGCCAAGAGCGATTT...CCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCTGAACAGGGCTCCACATTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR TCA 90 bp | AAATGTGGAGCCCTGTTCAGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGTGGGGGCTGGTGGGTTaGTCAAGGTGGAAATGGCTT | + |
|
Preference number: 4 (lower is better) Translates to: KCGALFSWVELADALSSWWGLVG*SRWKWL Trigger: AAGCCATTTCCACCTTGATCAACCCACCAGCCCCCA...CCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCTGAACAGGGCTCCACATTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR GCA 90 bp | AAATGTGGAGCCCTGTTCAGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGGGTCCTTTCCACAATaGCCACCAGGGTCTGAGACT | + |
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Preference number: 4 (lower is better) Translates to: KCGALFSWVELADALSSWGSFPQ*PPGSET Trigger: AGTCTCAGACCCTGGTGGGCATTGTGGAAAGGACCC...CCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCTGAACAGGGCTCCACATTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CCA 90 bp | AAATGTGGAGCCCTGTTCAGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGAGGGCTTGCACCAAGTaGGTCCTTTCCACAATGCCC | + |
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Preference number: 4 (lower is better) Translates to: KCGALFSWVELADALSSWRACTK*VLSTMP Trigger: GGGCATTGTGGAAAGGACCCACTTGGTGCAAGCCCT...CCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCTGAACAGGGCTCCACATTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CCA 90 bp | AAATGTGGAGCCCTGTTCAGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGTGGAGAAATCGCTCTTaGCCTGGAGCCCAGGAAGCT | + |
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Preference number: 4 (lower is better) Translates to: KCGALFSWVELADALSSWWRNRS*PGAQEA Trigger: AGCTTCCTGGGCTCCAGGCCAAGAGCGATTTCTCCA...CCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCTGAACAGGGCTCCACATTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR TCA 90 bp | AAATGTGGAGCCCTGTTCAGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCATCCAGAACTTCATaGTCAGGAAGAAGGCCAGCG | + |
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Preference number: 4 (lower is better) Translates to: KCGALFSWVELADALSSWASRTS*SGRRPA Trigger: CGCTGGCCTTCTTCCTGATCATGAAGTTCTGGATGC...CCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCTGAACAGGGCTCCACATTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CCA 90 bp | AAATGTGGAGCCCTGTTCAGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGAGGGCTGTAAGTTTTaGGAGATGACATTGGCCGCC | + |
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Preference number: 4 (lower is better) Translates to: KCGALFSWVELADALSSWEGCKF*EMTLAA Trigger: GGCGGCCAATGTCATCTCCCAAAACTTACAGCCCTC...CCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCTGAACAGGGCTCCACATTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR TCA 90 bp | AAATGTGGAGCCCTGTTCAGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCAGTTTCTTGGCCATaGTGGTGCCATCGTAGAAAG | + |
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Preference number: 4 (lower is better) Translates to: KCGALFSWVELADALSSWAVSWP*WCHRRK Trigger: CTTTCTACGATGGCACCATCATGGCCAAGAAACTGC...CCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCTGAACAGGGCTCCACATTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CCA 90 bp | AAATGTGGAGCCCTGTTCAGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCATTTCAACTTCCTTaGCCTTGCTCTCAGTATCCC | + |
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Preference number: 4 (lower is better) Translates to: KCGALFSWVELADALSSWAFQLP*PCSQYP Trigger: GGGATACTGAGAGCAAGGCCAAGGAAGTTGAAATGC...CCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCTGAACAGGGCTCCACATTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS GCA 90 bp | CGCCCACCGCCGCTGCCGCCGACAGCATTTCAACTTCCTTGGCCTTaGTCTCAGTATCCCCGACGGCTTTGGCGCGCACGCGGCCCAGAT | + |
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Preference number: 5 (lower is better) Translates to: RPPPLPPTAFQLPWP*SQYPRRLWRARGPD Trigger: ATCTGGGCCGCGTGCGCGCCAAAGCCGTCGGGGATACTGAGAGCAAGGCCAAGGAAGTTGAAATGCTGTCGGCGGCAGCGGCGGTGGGCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS TCA 90 bp | CAGCCGGGAAGCCATGAAACGGCCCACACCAGGAGGATAGGTGACTaGAGCCAGGACCAGCGCGACCAGAGCTGCGTAGGAAGGCTTGCT | + |
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Preference number: 5 (lower is better) Translates to: QPGSHETAHTRRIGD*SQDQRDQSCVGRLA Trigger: AGCAAGCCTTCCTACGCAGCTCTGGTCGCGCTGGTCCTGGCTTCAGTCACCTATCCTCCTGGTGTGGGCCGTTTCATGGCTTCCCGGCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CAA 90 bp | AGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTGGGCTGGAGGAGTGCCTGGAGAAATCGCTCTaGGCCTGGAGCCCAGGAAGC | + |
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Preference number: 5 (lower is better) Translates to: SWVELADALSSWAGLEECLEKSL*AWSPGS Trigger: GCTTCCTGGGCTCCAGGCCAAGAGCGATTTCTCCAG...GCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CAA 90 bp | AGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTGGGCTGGAGGAGTGCGTCTCCTGTTCACTGTaGAAGACCGCCAGGAGACGG | + |
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Preference number: 5 (lower is better) Translates to: SWVELADALSSWAGLEECVSCSL*KTARRR Trigger: CCGTCTCCTGGCGGTCTTCAACAGTGAACAGGAGAC...GCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CAA 90 bp | AGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTGGGCTGGAGGAGTGCTCTCTGTACAGCCACTaGTGTGCTCTGACCACACGC | + |
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Preference number: 5 (lower is better) Translates to: SWVELADALSSWAGLEECSLYSH*CALTTR Trigger: GCGTGTGGTCAGAGCACACAAGTGGCTGTACAGAGA...GCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CAA 90 bp | AGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTGGGCTGGAGGAGTGCTTTTGGGAGATGACATaGGCCGCCAGCACAGCCATC | + |
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Preference number: 5 (lower is better) Translates to: SWVELADALSSWAGLEECFWEMT*AASTAI Trigger: GATGGCTGTGCTGGCGGCCAATGTCATCTCCCAAAA...GCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS TCA 90 bp | CAGCTCTGGGAGTCCAGACCCTCCAGAGAAGGGCGTAATGCTCTGTaGGAAGCCGGAGGAGAAGGACAGAAGAGCTACGGGGTACACGGT | + |
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Preference number: 5 (lower is better) Translates to: QLWESRPSREGRNAL*EAGGEGQKSYGVHG Trigger: ACCGTGTACCCCGTAGCTCTTCTGTCCTTCTCCTCCGGCTTCTCACAGAGCATTACGCCCTTCTCTGGAGGGTCTGGACTCCCAGAGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 ENSMUST00000133676.3 |
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| CDS-3UTR CAA 90 bp | AGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTGGGCTGGAGGAGTGCAACGCCCACGAGTTGTaGTCAAACAGAGAGTGCAAG | + |
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Preference number: 5 (lower is better) Translates to: SWVELADALSSWAGLEECNAHEL*SNRECK Trigger: CTTGCACTCTCTGTTTGACAACAACTCGTGGGCGTT...GCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CAA 90 bp | AAATGTGGAGCCCTGTTCAGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGCTGGAGAAATCGCTCTaGGCCTGGAGCCCAGGAAGC | + |
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Preference number: 5 (lower is better) Translates to: KCGALFSWVELADALSSWLEKSL*AWSPGS Trigger: GCTTCCTGGGCTCCAGGCCAAGAGCGATTTCTCCAG...CCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCTGAACAGGGCTCCACATTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CAA 90 bp | AGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGGCTGGGCTGGAGGAGTGCAGCATTTCAACTTCCTaGGCCTTGCTCTCAGTATCC | + |
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Preference number: 5 (lower is better) Translates to: SWVELADALSSWAGLEECSISTS*ALLSVS Trigger: GGATACTGAGAGCAAGGCCAAGGAAGTTGAAATGCT...GCACTCCTCCAGCCCAGCCCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CAA 90 bp | AAATGTGGAGCCCTGTTCAGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGTCTCTGTACAGCCACTaGTGTGCTCTGACCACACGC | + |
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Preference number: 5 (lower is better) Translates to: KCGALFSWVELADALSSWSLYSH*CALTTR Trigger: GCGTGTGGTCAGAGCACACAAGTGGCTGTACAGAGA...CCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCTGAACAGGGCTCCACATTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CAA 90 bp | AAATGTGGAGCCCTGTTCAGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGTCAACTTCCTTGGCCTaGCTCTCAGTATCCCCGACG | + |
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Preference number: 5 (lower is better) Translates to: KCGALFSWVELADALSSWSTSLA*LSVSPT Trigger: CGTCGGGGATACTGAGAGCAAGGCCAAGGAAGTTGA...CCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCTGAACAGGGCTCCACATTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CAA 90 bp | AAATGTGGAGCCCTGTTCAGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGTTTTGGGAGATGACATaGGCCGCCAGCACAGCCATC | + |
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Preference number: 5 (lower is better) Translates to: KCGALFSWVELADALSSWFWEMT*AASTAI Trigger: GATGGCTGTGCTGGCGGCCAATGTCATCTCCCAAAA...CCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCTGAACAGGGCTCCACATTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CAA 90 bp | AAATGTGGAGCCCTGTTCAGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGAACGCCCACGAGTTGTaGTCAAACAGAGAGTGCAAG | + |
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Preference number: 5 (lower is better) Translates to: KCGALFSWVELADALSSWNAHEL*SNRECK Trigger: CTTGCACTCTCTGTTTGACAACAACTCGTGGGCGTT...CCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCTGAACAGGGCTCCACATTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS-3UTR CAA 90 bp | AAATGTGGAGCCCTGTTCAGCTGGGTAGAGCTGGCTGATGCACTGAGTAGCTGGAGCATTTCAACTTCCTaGGCCTTGCTCTCAGTATCC | + |
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Preference number: 5 (lower is better) Translates to: KCGALFSWVELADALSSWSISTS*ALLSVS Trigger: GGATACTGAGAGCAAGGCCAAGGAAGTTGAAATGCT...CCAGCTACTCAGTGCATCAGCCAGCTCTACCCAGCTGAACAGGGCTCCACATTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS CAA 90 bp | ACGCCCACCGCCGCTGCCGCCGACAGCATTTCAACTTCCTTGGCCTaGCTCTCAGTATCCCCGACGGCTTTGGCGCGCACGCGGCCCAGA | + |
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Preference number: 6 (lower is better) Translates to: TPTAAAADSISTSLA*LSVSPTALARTRPR Trigger: TCTGGGCCGCGTGCGCGCCAAAGCCGTCGGGGATACTGAGAGCAAGGCCAAGGAAGTTGAAATGCTGTCGGCGGCAGCGGCGGTGGGCGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS TCA 72 bp | GGAACAGCCGCTCTTTCAGCCACTCTAGGCCCCCTCTaGTGCCTCGGCGGATGCGTGGACACGGACCCCATA | + |
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Preference number: 6 (lower is better) Translates to: GTAALSATLGPL*CLGGCVDTDPI Trigger: TATGGGGTCCGTGTCCACGCATCCGCCGAGGCATCAGAGGGGGCCTAGAGTGGCTGAAAGAGCGGCTGTTCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 ENSMUST00000133676.3 |
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| CDS GCA 72 bp | CCGCTGCCGCCGACAGCATTTCAACTTCCTTGGCCTTaGTCTCAGTATCCCCGACGGCTTTGGCGCGCACGC | + |
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Preference number: 6 (lower is better) Translates to: PLPPTAFQLPWP*SQYPRRLWRAR Trigger: GCGTGCGCGCCAAAGCCGTCGGGGATACTGAGAGCAAGGCCAAGGAAGTTGAAATGCTGTCGGCGGCAGCGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS CCA 72 bp | CCACCGCCGCTGCCGCCGACAGCATTTCAACTTCCTTaGCCTTGCTCTCAGTATCCCCGACGGCTTTGGCGC | + |
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Preference number: 6 (lower is better) Translates to: PPPLPPTAFQLP*PCSQYPRRLWR Trigger: GCGCCAAAGCCGTCGGGGATACTGAGAGCAAGGCCAAGGAAGTTGAAATGCTGTCGGCGGCAGCGGCGGTGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS CCA 72 bp | GATGGGATAGACCTCTCCGCCAGCCACAATGCCCTCTaGGAAGGCGACAGACAGGGCCTCTCCCAAGAGGCG | + |
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Preference number: 6 (lower is better) Translates to: DGIDLSASHNAL*EGDRQGLSQEA Trigger: CGCCTCTTGGGAGAGGCCCTGTCTGTCGCCTTCCCAGAGGGCATTGTGGCTGGCGGAGAGGTCTATCCCATC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS CAA 72 bp | GCCGCTGCCGCCGACAGCATTTCAACTTCCTTGGCCTaGCTCTCAGTATCCCCGACGGCTTTGGCGCGCACG | + |
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Preference number: 6 (lower is better) Translates to: AAAADSISTSLA*LSVSPTALART Trigger: CGTGCGCGCCAAAGCCGTCGGGGATACTGAGAGCAAGGCCAAGGAAGTTGAAATGCTGTCGGCGGCAGCGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS CAA 72 bp | CCCACCGCCGCTGCCGCCGACAGCATTTCAACTTCCTaGGCCTTGCTCTCAGTATCCCCGACGGCTTTGGCG | + |
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Preference number: 6 (lower is better) Translates to: PTAAAADSISTS*ALLSVSPTALA Trigger: CGCCAAAGCCGTCGGGGATACTGAGAGCAAGGCCAAGGAAGTTGAAATGCTGTCGGCGGCAGCGGCGGTGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS TCA 72 bp | AGCCATGAAACGGCCCACACCAGGAGGATAGGTGACTaGAGCCAGGACCAGCGCGACCAGAGCTGCGTAGGA | + |
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Preference number: 6 (lower is better) Translates to: SHETAHTRRIGD*SQDQRDQSCVG Trigger: TCCTACGCAGCTCTGGTCGCGCTGGTCCTGGCTTCAGTCACCTATCCTCCTGGTGTGGGCCGTTTCATGGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS TCA 72 bp | GAGTCCAGACCCTCCAGAGAAGGGCGTAATGCTCTGTaGGAAGCCGGAGGAGAAGGACAGAAGAGCTACGGG | + |
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Preference number: 6 (lower is better) Translates to: ESRPSREGRNAL*EAGGEGQKSYG Trigger: CCCGTAGCTCTTCTGTCCTTCTCCTCCGGCTTCTCACAGAGCATTACGCCCTTCTCTGGAGGGTCTGGACTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 ENSMUST00000133676.3 |
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| CDS GCA 72 bp | TCTGAAGGGCTTGCACCAAGTGGGTCCTTTCCACAATaGCCACCAGGGTCTGAGACTCTCTGGTCTCCACCA | + |
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Preference number: 6 (lower is better) Translates to: SEGLAPSGSFPQ*PPGSETLWSPP Trigger: TGGTGGAGACCAGAGAGTCTCAGACCCTGGTGGGCATTGTGGAAAGGACCCACTTGGTGCAAGCCCTTCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS CAA 72 bp | GGGGACGCATTCCGAGTCATCAACGCCCACGAGTTGTaGTCAAACAGAGAGTGCAAGTGTTCCGCCATGGAC | + |
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Preference number: 6 (lower is better) Translates to: GDAFRVINAHEL*SNRECKCSAMD Trigger: GTCCATGGCGGAACACTTGCACTCTCTGTTTGACAACAACTCGTGGGCGTTGATGACTCGGAATGCGTCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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| CDS TCA 72 bp | CACGGATCCACGGCAGGTACGGCAGTTTCTTGGCCATaGTGGTGCCATCGTAGAAAGAGGGCTGTAAGTTTT | + |
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Preference number: 6 (lower is better) Translates to: HGSTAGTAVSWP*WCHRRKRAVSF Trigger: AAAACTTACAGCCCTCTTTCTACGATGGCACCATCATGGCCAAGAAACTGCCGTACCTGCCGTGGATCCGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042617.14 ENSMUST00000105790.8 |
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