Pregenerated sensors for CLCF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040663Ensembl transcript IDs: ENSMUST00000046506.7, ENSMUST00000138090.2
Found 92 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAGTCCCTGGCAGAGGCTGGGGCAGTGGGTAGCCAAGCGTCGCCATaGCACCTGCAATGCTGCCCAGCAGGCCCTGGAGGCTGGTACAGA | + |
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Preference number: 1 (lower is better) Translates to: QSLAEAGAVGSQASP*HLQCCPAGPGGWYR Trigger: TCTGTACCAGCCTCCAGGGCCTGCTGGGCAGCATTGCAGGTGTCATGGCGACGCTTGGCTACCCACTGCCCCAGCCTCTGCCAGGGACTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
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| 3UTR GCA 90 bp | TGGCAGAGGCTGGGGCAGTGGGTAGCCAAGCGTCGCCATGACACCTaGAATGCTGCCCAGCAGGCCCTGGAGGCTGGTACAGAAGTGGGC | + |
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Preference number: 1 (lower is better) Translates to: WQRLGQWVAKRRHDT*NAAQQALEAGTEVG Trigger: GCCCACTTCTGTACCAGCCTCCAGGGCCTGCTGGGCAGCATTGCAGGTGTCATGGCGACGCTTGGCTACCCACTGCCCCAGCCTCTGCCA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
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| 3UTR TCA 90 bp | GGTAGGTCCCAGCTAAGCTGCGGAGTTGATGCTCCAGGTAGCGGGTaGGGTCATAGGTTTTCTGGATGGAGGGGCCAGGGCCTGGATCTC | + |
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Preference number: 1 (lower is better) Translates to: GRSQLSCGVDAPGSG*GHRFSGWRGQGLDL Trigger: GAGATCCAGGCCCTGGCCCCTCCATCCAGAAAACCTATGACCTCACCCGCTACCTGGAGCATCAACTCCGCAGCTTAGCTGGGACCTACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
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| 3UTR GCA 90 bp | GCTTCGCCACACTTCCAAGTTGACCGTGGCCCTGGGCAGAGTTTCTaGCCCCAGTCGAGGAGGATTGAAGTCAGGCTCGTTGAAAGGGGG | + |
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Preference number: 1 (lower is better) Translates to: ASPHFQVDRGPGQSF*PQSRRIEVRLVERG Trigger: CCCCCTTTCAACGAGCCTGACTTCAATCCTCCTCGACTGGGGGCAGAAACTCTGCCCAGGGCCACGGTCAACTTGGAAGTGTGGCGAAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
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| 3UTR CCA 90 bp | GTAGCGGGTGAGGTCATAGGTTTTCTGGATGGAGGGGCCAGGGCCTaGATCTCCTGTGCGATTAAGAGCTGGCACTGCAGGGAGGTGCCA | + |
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Preference number: 1 (lower is better) Translates to: VAGEVIGFLDGGARA*ISCAIKSWHCREVP Trigger: TGGCACCTCCCTGCAGTGCCAGCTCTTAATCGCACAGGAGATCCAGGCCCTGGCCCCTCCATCCAGAAAACCTATGACCTCACCCGCTAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
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| 3UTR TCA 90 bp | AGTGGGCCAGGCTACGTCGGAGTTCAGCTGTGGCAGCCTGACGGTTaGGGCCACGCAAGTAACACAGGAGGTGACTGTACGCCTCATAGT | + |
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Preference number: 1 (lower is better) Translates to: SGPGYVGVQLWQPDG*GHASNTGGDCTPHS Trigger: ACTATGAGGCGTACAGTCACCTCCTGTGTTACTTGCGTGGCCTCAACCGTCAGGCTGCCACAGCTGAACTCCGACGTAGCCTGGCCCACT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
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| 3UTR GCA 90 bp | AAGGAGAGGGAGGGAAGCCAAGGGGCCTTATCCCAGAAAGGCACATaGTACAGTGGCCCCCACCCATACCCTCCAAGGGTGCTTCTGCAA | + |
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Preference number: 1 (lower is better) Translates to: KEREGSQGALSQKGT*YSGPHPYPPRVLLQ Trigger: TTGCAGAAGCACCCTTGGAGGGTATGGGTGGGGGCCACTGTAGCATGTGCCTTTCTGGGATAAGGCCCCTTGGCTTCCCTCCCTCTCCTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
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| 3UTR CCA 90 bp | CCAAGGGTGCTTCTGCAAATGCCACATGAGGGACTGAGTGAGTACTaGCAAGTGGCAGGCAGAGAGCAGGAGGCAGGGAGAGCCATTCCA | + |
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Preference number: 1 (lower is better) Translates to: PRVLLQMPHEGLSEY*QVAGREQEAGRAIP Trigger: TGGAATGGCTCTCCCTGCCTCCTGCTCTCTGCCTGCCACTTGCCAGTACTCACTCAGTCCCTCATGTGGCATTTGCAGAAGCACCCTTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
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| 3UTR TCA 90 bp | AAGGGTCAGAGGTCAGAAACCATGGGCCTCCAAGTGCAGGGTGACTaGAGCTGCTGGAGGCTGCATCTTCTTCTTAAGCCGGTTGAAGTC | + |
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Preference number: 1 (lower is better) Translates to: KGQRSETMGLQVQGD*SCWRLHLLLKPVEV Trigger: GACTTCAACCGGCTTAAGAAGAAGATGCAGCCTCCAGCAGCTTCAGTCACCCTGCACTTGGAGGCCCATGGTTTCTGACCTCTGACCCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
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| 3UTR CCA 90 bp | TGCTACTGCAATGTAAACTTTCAGGAAACCCTGTGGCTATGGCTATaGCTGCCCTCCCCAGCCCAGGCAACCACAGATACCCTGGGAAAG | + |
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Preference number: 1 (lower is better) Translates to: CYCNVNFQETLWLWL*LPSPAQATTDTLGK Trigger: CTTTCCCAGGGTATCTGTGGTTGCCTGGGCTGGGGAGGGCAGCCATAGCCATAGCCACAGGGTTTCCTGAAAGTTTACATTGCAGTAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
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| 3UTR CCA 90 bp | CCACAATGCTACTGCAATGTAAACTTTCAGGAAACCCTGTGGCTATaGCTATGGCTGCCCTCCCCAGCCCAGGCAACCACAGATACCCTG | + |
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Preference number: 1 (lower is better) Translates to: PQCYCNVNFQETLWL*LWLPSPAQATTDTL Trigger: CAGGGTATCTGTGGTTGCCTGGGCTGGGGAGGGCAGCCATAGCCATAGCCACAGGGTTTCCTGAAAGTTTACATTGCAGTAGCATTGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
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| 3UTR GCA 90 bp | TTCTTAAGCCGGTTGAAGTCCTTGGCTGAACGCCATAGCCAGGTCTaGAGCTCCTTCAGCAGCCAGAAGTCATCCATCTTCTGGAGGAAG | + |
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Preference number: 1 (lower is better) Translates to: FLSRLKSLAERHSQV*SSFSSQKSSIFWRK Trigger: CTTCCTCCAGAAGATGGATGACTTCTGGCTGCTGAAGGAGCTGCAGACCTGGCTATGGCGTTCAGCCAAGGACTTCAACCGGCTTAAGAA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
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| 3UTR CCA 90 bp | TTACACTCCCCATCCAAGGCTGAGGAGGGCAGAGCTCCCATGGTCTaGTTCCTGGCTCAACAAATGTTGGTATACAGGATTTTTCACCCC | + |
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Preference number: 1 (lower is better) Translates to: LHSPSKAEEGRAPMV*FLAQQMLVYRIFHP Trigger: GGGGTGAAAAATCCTGTATACCAACATTTGTTGAGCCAGGAACCAGACCATGGGAGCTCTGCCCTCCTCAGCCTTGGATGGGGAGTGTAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
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| 3UTR CCA 90 bp | TTGAGTTACACTCCCCATCCAAGGCTGAGGAGGGCAGAGCTCCCATaGTCTGGTTCCTGGCTCAACAAATGTTGGTATACAGGATTTTTC | + |
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Preference number: 1 (lower is better) Translates to: LSYTPHPRLRRAELP*SGSWLNKCWYTGFF Trigger: GAAAAATCCTGTATACCAACATTTGTTGAGCCAGGAACCAGACCATGGGAGCTCTGCCCTCCTCAGCCTTGGATGGGGAGTGTAACTCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
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| 3UTR TCA 90 bp | TCCATTTACTGTAACACTCTTCTTAGGACTGGTCACTTTGTTTCCTaGACTGGATATGTAGTTATTGGGGTAGGGGAGCAACACCCATCC | + |
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Preference number: 1 (lower is better) Translates to: SIYCNTLLRTGHFVS*TGYVVIGVGEQHPS Trigger: GGATGGGTGTTGCTCCCCTACCCCAATAACTACATATCCAGTTCAGGAAACAAAGTGACCAGTCCTAAGAAGAGTGTTACAGTAAATGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
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| 3UTR-3UTR CCA 90 bp | AGGCCCTGGAGGCTGGTACAGAAGTGGGCCAGGCTACGTCGGAGTTCAGCTGTGGGAGGGGCCAGGGCCTaGATCTCCTGTGCGATTAAG | + |
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Preference number: 2 (lower is better) Translates to: RPWRLVQKWARLRRSSAVGGARA*ISCAIK Trigger: CTTAATCGCACAGGAGATCCAGGCCCTGGCCCCTCC...CACAGCTGAACTCCGACGTAGCCTGGCCCACTTCTGTACCAGCCTCCAGGGCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
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| 3UTR-3UTR CCA 90 bp | TTGGCTGAACGCCATAGCCAGGTCTGCAGCTCCTTCAGCAGCCAGAAGTCATCCGCAGGCCCTGGAGGCTaGTACAGAAGTGGGCCAGGC | + |
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Preference number: 2 (lower is better) Translates to: LAERHSQVCSSFSSQKSSAGPGG*YRSGPG Trigger: GCCTGGCCCACTTCTGTACCAGCCTCCAGGGCCTGC...GGATGACTTCTGGCTGCTGAAGGAGCTGCAGACCTGGCTATGGCGTTCAGCCAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
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| 3UTR-3UTR CCA 90 bp | ATGCCACATGAGGGACTGAGTGAGTACTGGCAAGTGGCAGGCAGAGAGCAGGAGGGAAGCACAGCTGACTaGGCCTGGAGGTGTGGGGGT | + |
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Preference number: 2 (lower is better) Translates to: MPHEGLSEYWQVAGREQEGSTAD*AWRCGG Trigger: ACCCCCACACCTCCAGGCCCAGTCAGCTGTGCTTCC...CTCCTGCTCTCTGCCTGCCACTTGCCAGTACTCACTCAGTCCCTCATGTGGCAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
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| 3UTR-3UTR CCA 90 bp | CATCCAAGGCTGAGGAGGGCAGAGCTCCCATGGTCTGGTTCCTGGCTCAACAAAGGAAGCACAGCTGACTaGGCCTGGAGGTGTGGGGGT | + |
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Preference number: 2 (lower is better) Translates to: HPRLRRAELPWSGSWLNKGSTAD*AWRCGG Trigger: ACCCCCACACCTCCAGGCCCAGTCAGCTGTGCTTCC...TTTGTTGAGCCAGGAACCAGACCATGGGAGCTCTGCCCTCCTCAGCCTTGGATG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
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| 3UTR-3UTR CCA 90 bp | TTGGCTGAACGCCATAGCCAGGTCTGCAGCTCCTTCAGCAGCCAGAAGTCATCCCTGCCCAGCAGGCCCTaGAGGCTGGTACAGAAGTGG | + |
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Preference number: 2 (lower is better) Translates to: LAERHSQVCSSFSSQKSSLPSRP*RLVQKW Trigger: CCACTTCTGTACCAGCCTCCAGGGCCTGCTGGGCAG...GGATGACTTCTGGCTGCTGAAGGAGCTGCAGACCTGGCTATGGCGTTCAGCCAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
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| 3UTR-3UTR CCA 90 bp | CAAGGGGCCTTATCCCAGAAAGGCACATGCTACAGTGGCCCCCACCCATACCCTAGGGCAGAGCTCCCATaGTCTGGTTCCTGGCTCAAC | + |
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Preference number: 2 (lower is better) Translates to: QGALSQKGTCYSGPHPYPRAELP*SGSWLN Trigger: GTTGAGCCAGGAACCAGACCATGGGAGCTCTGCCCT...AGGGTATGGGTGGGGGCCACTGTAGCATGTGCCTTTCTGGGATAAGGCCCCTTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
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| 3UTR-3UTR CCA 90 bp | TCCAAGGCTGAGGAGGGCAGAGCTCCCATGGTCTGGTTCCTGGCTCAACAAATGGGTGACTGCTGGGTCTaGTCTGTCCCTGCCCTTCTC | + |
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Preference number: 2 (lower is better) Translates to: SKAEEGRAPMVWFLAQQMGDCWV*SVPALL Trigger: GAGAAGGGCAGGGACAGACCAGACCCAGCAGTCACC...CATTTGTTGAGCCAGGAACCAGACCATGGGAGCTCTGCCCTCCTCAGCCTTGGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
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| 3UTR-3UTR GCA 90 bp | TTCCACTTCCTCAGGCATCGCCTCGATGCCCACTGTACGATTTCCCCAGACCCTCCTGGGCAGAGTTTCTaGCCCCAGTCGAGGAGGATT | + |
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Preference number: 2 (lower is better) Translates to: FHFLRHRLDAHCTISPDPPGQSF*PQSRRI Trigger: AATCCTCCTCGACTGGGGGCAGAAACTCTGCCCAGG...AGGGTCTGGGGAAATCGTACAGTGGGCATCGAGGCGATGCCTGAGGAAGTGGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
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| 3UTR-3UTR CCA 90 bp | CAAGGGGCCTTATCCCAGAAAGGCACATGCTACAGTGGCCCCCACCCATACCCTGGACTGAGTGAGTACTaGCAAGTGGCAGGCAGAGAG | + |
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Preference number: 2 (lower is better) Translates to: QGALSQKGTCYSGPHPYPGLSEY*QVAGRE Trigger: CTCTCTGCCTGCCACTTGCCAGTACTCACTCAGTCC...AGGGTATGGGTGGGGGCCACTGTAGCATGTGCCTTTCTGGGATAAGGCCCCTTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
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| 3UTR-3UTR GCA 90 bp | TCCAAGGCTGAGGAGGGCAGAGCTCCCATGGTCTGGTTCCTGGCTCAACAAATGATTAAGAGCTGGCACTaGAGGGAGGTGCCACAGCAC | + |
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Preference number: 2 (lower is better) Translates to: SKAEEGRAPMVWFLAQQMIKSWH*REVPQH Trigger: GTGCTGTGGCACCTCCCTGCAGTGCCAGCTCTTAAT...CATTTGTTGAGCCAGGAACCAGACCATGGGAGCTCTGCCCTCCTCAGCCTTGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
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| 3UTR CAA 90 bp | AGGGTGACTGAAGCTGCTGGAGGCTGCATCTTCTTCTTAAGCCGGTaGAAGTCCTTGGCTGAACGCCATAGCCAGGTCTGCAGCTCCTTC | + |
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Preference number: 2 (lower is better) Translates to: RVTEAAGGCIFFLSR*KSLAERHSQVCSSF Trigger: GAAGGAGCTGCAGACCTGGCTATGGCGTTCAGCCAAGGACTTCAACCGGCTTAAGAAGAAGATGCAGCCTCCAGCAGCTTCAGTCACCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
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| 3UTR-3UTR TCA 90 bp | CTGCAATGTAAACTTTCAGGAAACCCTGTGGCTATGGCTATGGCTGCCCTCCCCTGGCAGCCTGACGGTTaGGGCCACGCAAGTAACACA | + |
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Preference number: 2 (lower is better) Translates to: LQCKLSGNPVAMAMAALPWQPDG*GHASNT Trigger: TGTGTTACTTGCGTGGCCTCAACCGTCAGGCTGCCA...GGGGAGGGCAGCCATAGCCATAGCCACAGGGTTTCCTGAAAGTTTACATTGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
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| 3UTR-3UTR CCA 90 bp | CAAGGGGCCTTATCCCAGAAAGGCACATGCTACAGTGGCCCCCACCCATACCCTAGAGCTCCCATGGTCTaGTTCCTGGCTCAACAAATG | + |
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Preference number: 2 (lower is better) Translates to: QGALSQKGTCYSGPHPYPRAPMV*FLAQQM Trigger: CATTTGTTGAGCCAGGAACCAGACCATGGGAGCTCT...AGGGTATGGGTGGGGGCCACTGTAGCATGTGCCTTTCTGGGATAAGGCCCCTTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
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| 3UTR-3UTR CCA 90 bp | GAGGCCACGCAAGTAACACAGGAGGTGACTGTACGCCTCATAGTTCTGGGTCAGTGTGCGATTAAGAGCTaGCACTGCAGGGAGGTGCCA | + |
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Preference number: 2 (lower is better) Translates to: EATQVTQEVTVRLIVLGQCAIKS*HCREVP Trigger: TGGCACCTCCCTGCAGTGCCAGCTCTTAATCGCACA...CTGACCCAGAACTATGAGGCGTACAGTCACCTCCTGTGTTACTTGCGTGGCCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
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| 3UTR-3UTR CCA 90 bp | CTTATTGAGTTACACTCCCCATCCAAGGCTGAGGAGGGCAGAGCTCCCATGGTCCATAGGTTTTCTGGATaGAGGGGCCAGGGCCTGGAT | + |
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Preference number: 2 (lower is better) Translates to: LIELHSPSKAEEGRAPMVHRFSG*RGQGLD Trigger: ATCCAGGCCCTGGCCCCTCCATCCAGAAAACCTATG...GACCATGGGAGCTCTGCCCTCCTCAGCCTTGGATGGGGAGTGTAACTCAATAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
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| 3UTR-3UTR GCA 90 bp | GTACTAATGCTCAACATGGCTTTTGTTTTCCACCCTGTGCCACCAACTGTCTTGCGTCGCCATGACACCTaGAATGCTGCCCAGCAGGCC | + |
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Preference number: 2 (lower is better) Translates to: VLMLNMAFVFHPVPPTVLRRHDT*NAAQQA Trigger: GGCCTGCTGGGCAGCATTGCAGGTGTCATGGCGACG...CAAGACAGTTGGTGGCACAGGGTGGAAAACAAAAGCCATGTTGAGCATTAGTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
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| 3UTR-3UTR CCA 90 bp | CTACTGCAATGTAAACTTTCAGGAAACCCTGTGGCTATGGCTATGGCTGCCCTCCAACCACAGATACCCTaGGAAAGGGGGCAGAGAGGA | + |
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Preference number: 2 (lower is better) Translates to: LLQCKLSGNPVAMAMAALQPQIP*ERGQRG Trigger: TCCTCTCTGCCCCCTTTCCCAGGGTATCTGTGGTTG...GAGGGCAGCCATAGCCATAGCCACAGGGTTTCCTGAAAGTTTACATTGCAGTAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
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| 3UTR CAA 90 bp | GAGGAGGGCAGAGCTCCCATGGTCTGGTTCCTGGCTCAACAAATGTaGGTATACAGGATTTTTCACCCCACAATGGAAGCACAGCTGACT | + |
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Preference number: 2 (lower is better) Translates to: EEGRAPMVWFLAQQM*VYRIFHPTMEAQLT Trigger: AGTCAGCTGTGCTTCCATTGTGGGGTGAAAAATCCTGTATACCAACATTTGTTGAGCCAGGAACCAGACCATGGGAGCTCTGCCCTCCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
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| 3UTR-3UTR CCA 90 bp | ACTAATGCTCAACATGGCTTTTGTTTTCCACCCTGTGCCACCAACTGTCTTGGTGTGAGTACTGGCAAGTaGCAGGCAGAGAGCAGGAGG | + |
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Preference number: 2 (lower is better) Translates to: TNAQHGFCFPPCATNCLGVSTGK*QAESRR Trigger: CCTCCTGCTCTCTGCCTGCCACTTGCCAGTACTCAC...ACCAAGACAGTTGGTGGCACAGGGTGGAAAACAAAAGCCATGTTGAGCATTAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
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| 3UTR-3UTR CCA 90 bp | CAGAGCTCCCATGGTCTGGTTCCTGGCTCAACAAATGTTGGTATACAGGATTTTTGTCTTGGTGACTGCTaGGTCTGGTCTGTCCCTGCC | + |
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Preference number: 2 (lower is better) Translates to: QSSHGLVPGSTNVGIQDFCLGDC*VWSVPA Trigger: GGCAGGGACAGACCAGACCCAGCAGTCACCAAGACA...AAAATCCTGTATACCAACATTTGTTGAGCCAGGAACCAGACCATGGGAGCTCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
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| 3UTR-3UTR CCA 90 bp | TCCAAGGCTGAGGAGGGCAGAGCTCCCATGGTCTGGTTCCTGGCTCAACAAATGGAGGCACCAAGATGCTaGCAAGAAAATTCAAAGCAA | + |
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Preference number: 2 (lower is better) Translates to: SKAEEGRAPMVWFLAQQMEAPRC*QENSKQ Trigger: TTGCTTTGAATTTTCTTGCCAGCATCTTGGTGCCTC...CATTTGTTGAGCCAGGAACCAGACCATGGGAGCTCTGCCCTCCTCAGCCTTGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
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| 3UTR-3UTR CCA 90 bp | TGGTTCCTGGCTCAACAAATGTTGGTATACAGGATTTTTCACCCCACAATGGAAGGTGACTGCTGGGTCTaGTCTGTCCCTGCCCTTCTC | + |
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Preference number: 2 (lower is better) Translates to: WFLAQQMLVYRIFHPTMEGDCWV*SVPALL Trigger: GAGAAGGGCAGGGACAGACCAGACCCAGCAGTCACC...TTCCATTGTGGGGTGAAAAATCCTGTATACCAACATTTGTTGAGCCAGGAACCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
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| 3UTR-3UTR GCA 90 bp | CCAAGATGCTGGCAAGAAAATTCAAAGCAAGGTACTAATGCTCAACATGGCTTTTCCCAGAAAGGCACATaGTACAGTGGCCCCCACCCA | + |
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Preference number: 2 (lower is better) Translates to: PRCWQENSKQGTNAQHGFSQKGT*YSGPHP Trigger: TGGGTGGGGGCCACTGTAGCATGTGCCTTTCTGGGA...AAAGCCATGTTGAGCATTAGTACCTTGCTTTGAATTTTCTTGCCAGCATCTTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
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| 3UTR-3UTR CCA 90 bp | TCATTGAGGCTTCGCCACACTTCCAAGTTGACCGTGGCCCTGGGCAGAGTTTCTTGGCTCAACAAATGTTaGTATACAGGATTTTTCACC | + |
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Preference number: 2 (lower is better) Translates to: SLRLRHTSKLTVALGRVSWLNKC*YTGFFT Trigger: GGTGAAAAATCCTGTATACCAACATTTGTTGAGCCA...AGAAACTCTGCCCAGGGCCACGGTCAACTTGGAAGTGTGGCGAAGCCTCAATGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
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| 3UTR-3UTR CCA 90 bp | CCAAGATGCTGGCAAGAAAATTCAAAGCAAGGTACTAATGCTCAACATGGCTTTGTGAGTACTGGCAAGTaGCAGGCAGAGAGCAGGAGG | + |
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Preference number: 2 (lower is better) Translates to: PRCWQENSKQGTNAQHGFVSTGK*QAESRR Trigger: CCTCCTGCTCTCTGCCTGCCACTTGCCAGTACTCAC...AAAGCCATGTTGAGCATTAGTACCTTGCTTTGAATTTTCTTGCCAGCATCTTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
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| 3UTR-3UTR TCA 90 bp | TGGTTCCTGGCTCAACAAATGTTGGTATACAGGATTTTTCACCCCACAATGGAAGACCCTAGGACTTTCTaGGCTAGAGGGCTTATTGAG | + |
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Preference number: 2 (lower is better) Translates to: WFLAQQMLVYRIFHPTMEDPRTF*ARGLIE Trigger: CTCAATAAGCCCTCTAGCTCAGAAAGTCCTAGGGTC...TTCCATTGTGGGGTGAAAAATCCTGTATACCAACATTTGTTGAGCCAGGAACCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
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| 3UTR-3UTR CCA 90 bp | CAGAGCTCCCATGGTCTGGTTCCTGGCTCAACAAATGTTGGTATACAGGATTTTTGGCTCAACAAATGTTaGTATACAGGATTTTTCACC | + |
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Preference number: 2 (lower is better) Translates to: QSSHGLVPGSTNVGIQDFWLNKC*YTGFFT Trigger: GGTGAAAAATCCTGTATACCAACATTTGTTGAGCCA...AAAATCCTGTATACCAACATTTGTTGAGCCAGGAACCAGACCATGGGAGCTCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
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| 3UTR TCA 72 bp | GCAGAGGCTGGGGCAGTGGGTAGCCAAGCGTCGCCATaGCACCTGCAATGCTGCCCAGCAGGCCCTGGAGGC | + |
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Preference number: 3 (lower is better) Translates to: AEAGAVGSQASP*HLQCCPAGPGG Trigger: GCCTCCAGGGCCTGCTGGGCAGCATTGCAGGTGTCATGGCGACGCTTGGCTACCCACTGCCCCAGCCTCTGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
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| 3UTR CCA 72 bp | ATGCTGCCCAGCAGGCCCTGGAGGCTGGTACAGAAGTaGGCCAGGCTACGTCGGAGTTCAGCTGTGGCAGCC | + |
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Preference number: 3 (lower is better) Translates to: MLPSRPWRLVQK*ARLRRSSAVAA Trigger: GGCTGCCACAGCTGAACTCCGACGTAGCCTGGCCCACTTCTGTACCAGCCTCCAGGGCCTGCTGGGCAGCAT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
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| 3UTR CCA 72 bp | GTCGCCATGACACCTGCAATGCTGCCCAGCAGGCCCTaGAGGCTGGTACAGAAGTGGGCCAGGCTACGTCGG | + |
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Preference number: 3 (lower is better) Translates to: VAMTPAMLPSRP*RLVQKWARLRR Trigger: CCGACGTAGCCTGGCCCACTTCTGTACCAGCCTCCAGGGCCTGCTGGGCAGCATTGCAGGTGTCATGGCGAC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
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| 3UTR TCA 72 bp | GGCTACGTCGGAGTTCAGCTGTGGCAGCCTGACGGTTaGGGCCACGCAAGTAACACAGGAGGTGACTGTACG | + |
|
Preference number: 3 (lower is better) Translates to: GYVGVQLWQPDG*GHASNTGGDCT Trigger: CGTACAGTCACCTCCTGTGTTACTTGCGTGGCCTCAACCGTCAGGCTGCCACAGCTGAACTCCGACGTAGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
||
| 3UTR-3UTR CAA 90 bp | GCCAAGGGGCCTTATCCCAGAAAGGCACATGCTACAGTGGCCCCCACCCATACCCCCAGTCGAGGAGGATaGAAGTCAGGCTCGTTGAAA | + |
|
Preference number: 3 (lower is better) Translates to: AKGPYPRKAHATVAPTHTPSRGG*KSGSLK Trigger: TTTCAACGAGCCTGACTTCAATCCTCCTCGACTGGG...GGTATGGGTGGGGGCCACTGTAGCATGTGCCTTTCTGGGATAAGGCCCCTTGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
||
| 3UTR GCA 72 bp | CACTTCCAAGTTGACCGTGGCCCTGGGCAGAGTTTCTaGCCCCAGTCGAGGAGGATTGAAGTCAGGCTCGTT | + |
|
Preference number: 3 (lower is better) Translates to: HFQVDRGPGQSF*PQSRRIEVRLV Trigger: AACGAGCCTGACTTCAATCCTCCTCGACTGGGGGCAGAAACTCTGCCCAGGGCCACGGTCAACTTGGAAGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
||
| 3UTR CCA 72 bp | GAGGTCATAGGTTTTCTGGATGGAGGGGCCAGGGCCTaGATCTCCTGTGCGATTAAGAGCTGGCACTGCAGG | + |
|
Preference number: 3 (lower is better) Translates to: EVIGFLDGGARA*ISCAIKSWHCR Trigger: CCTGCAGTGCCAGCTCTTAATCGCACAGGAGATCCAGGCCCTGGCCCCTCCATCCAGAAAACCTATGACCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
||
| 3UTR-3UTR CAA 90 bp | TGTTTTCCACCCTGTGCCACCAACTGTCTTGGTGACTGCTGGGTCTGGTCTGTCGTGCCACCAACTGTCTaGGTGACTGCTGGGTCTGGT | + |
|
Preference number: 3 (lower is better) Translates to: CFPPCATNCLGDCWVWSVVPPTV*VTAGSG Trigger: ACCAGACCCAGCAGTCACCAAGACAGTTGGTGGCAC...GACAGACCAGACCCAGCAGTCACCAAGACAGTTGGTGGCACAGGGTGGAAAACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
||
| 3UTR TCA 72 bp | CTCCAAGGGTGCTTCTGCAAATGCCACATGAGGGACTaGGTGAGTACTGGCAAGTGGCAGGCAGAGAGCAGG | + |
|
Preference number: 3 (lower is better) Translates to: LQGCFCKCHMRD*VSTGKWQAESR Trigger: CCTGCTCTCTGCCTGCCACTTGCCAGTACTCACTCAGTCCCTCATGTGGCATTTGCAGAAGCACCCTTGGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
||
| 3UTR GCA 72 bp | CGGTTGAAGTCCTTGGCTGAACGCCATAGCCAGGTCTaGAGCTCCTTCAGCAGCCAGAAGTCATCCATCTTC | + |
|
Preference number: 3 (lower is better) Translates to: RLKSLAERHSQV*SSFSSQKSSIF Trigger: GAAGATGGATGACTTCTGGCTGCTGAAGGAGCTGCAGACCTGGCTATGGCGTTCAGCCAAGGACTTCAACCG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
||
| 3UTR CCA 72 bp | ACTCCCCATCCAAGGCTGAGGAGGGCAGAGCTCCCATaGTCTGGTTCCTGGCTCAACAAATGTTGGTATACA | + |
|
Preference number: 3 (lower is better) Translates to: TPHPRLRRAELP*SGSWLNKCWYT Trigger: TGTATACCAACATTTGTTGAGCCAGGAACCAGACCATGGGAGCTCTGCCCTCCTCAGCCTTGGATGGGGAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
||
| 3UTR CCA 72 bp | TACTGCAATGTAAACTTTCAGGAAACCCTGTGGCTATaGCTATGGCTGCCCTCCCCAGCCCAGGCAACCACA | + |
|
Preference number: 3 (lower is better) Translates to: YCNVNFQETLWL*LWLPSPAQATT Trigger: TGTGGTTGCCTGGGCTGGGGAGGGCAGCCATAGCCATAGCCACAGGGTTTCCTGAAAGTTTACATTGCAGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
||
| 3UTR CCA 72 bp | CAATGCTACTGCAATGTAAACTTTCAGGAAACCCTGTaGCTATGGCTATGGCTGCCCTCCCCAGCCCAGGCA | + |
|
Preference number: 3 (lower is better) Translates to: QCYCNVNFQETL*LWLWLPSPAQA Trigger: TGCCTGGGCTGGGGAGGGCAGCCATAGCCATAGCCACAGGGTTTCCTGAAAGTTTACATTGCAGTAGCATTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
||
| 3UTR-3UTR CAA 90 bp | TCACTTTGTTTCCTGAACTGGATATGTAGTTATTGGGGTAGGGGAGCAACACCCCGCCACACTTCCAAGTaGACCGTGGCCCTGGGCAGA | + |
|
Preference number: 3 (lower is better) Translates to: SLCFLNWICSYWGRGATPRHTSK*TVALGR Trigger: TCTGCCCAGGGCCACGGTCAACTTGGAAGTGTGGCG...GGGTGTTGCTCCCCTACCCCAATAACTACATATCCAGTTCAGGAAACAAAGTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
||
| 3UTR-3UTR CAA 90 bp | AATGCTCAACATGGCTTTTGTTTTCCACCCTGTGCCACCAACTGTCTTGGTGACAGCCGCAGCCTGTCATaGAGGCTTCGCCACACTTCC | + |
|
Preference number: 3 (lower is better) Translates to: NAQHGFCFPPCATNCLGDSRSLS*RLRHTS Trigger: GGAAGTGTGGCGAAGCCTCAATGACAGGCTGCGGCT...GTCACCAAGACAGTTGGTGGCACAGGGTGGAAAACAAAAGCCATGTTGAGCATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
||
| 3UTR CCA 72 bp | CCATCCAAGGCTGAGGAGGGCAGAGCTCCCATGGTCTaGTTCCTGGCTCAACAAATGTTGGTATACAGGATT | + |
|
Preference number: 3 (lower is better) Translates to: PSKAEEGRAPMV*FLAQQMLVYRI Trigger: AATCCTGTATACCAACATTTGTTGAGCCAGGAACCAGACCATGGGAGCTCTGCCCTCCTCAGCCTTGGATGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
||
| 3UTR-3UTR CAA 90 bp | TCCAAGGCTGAGGAGGGCAGAGCTCCCATGGTCTGGTTCCTGGCTCAACAAATGTTAGGACTGGTCACTTaGTTTCCTGAACTGGATATG | + |
|
Preference number: 3 (lower is better) Translates to: SKAEEGRAPMVWFLAQQMLGLVT*FPELDM Trigger: CATATCCAGTTCAGGAAACAAAGTGACCAGTCCTAA...CATTTGTTGAGCCAGGAACCAGACCATGGGAGCTCTGCCCTCCTCAGCCTTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
||
| 3UTR CCA 72 bp | AGGCTGAGGAGGGCAGAGCTCCCATGGTCTGGTTCCTaGCTCAACAAATGTTGGTATACAGGATTTTTCACC | + |
|
Preference number: 3 (lower is better) Translates to: RLRRAELPWSGS*LNKCWYTGFFT Trigger: GGTGAAAAATCCTGTATACCAACATTTGTTGAGCCAGGAACCAGACCATGGGAGCTCTGCCCTCCTCAGCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
||
| 3UTR CCA 72 bp | GAGCTCCCATGGTCTGGTTCCTGGCTCAACAAATGTTaGTATACAGGATTTTTCACCCCACAATGGAAGCAC | + |
|
Preference number: 3 (lower is better) Translates to: ELPWSGSWLNKC*YTGFFTPQWKH Trigger: GTGCTTCCATTGTGGGGTGAAAAATCCTGTATACCAACATTTGTTGAGCCAGGAACCAGACCATGGGAGCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
||
| 3UTR TCA 72 bp | TGTAACACTCTTCTTAGGACTGGTCACTTTGTTTCCTaGACTGGATATGTAGTTATTGGGGTAGGGGAGCAA | + |
|
Preference number: 3 (lower is better) Translates to: CNTLLRTGHFVS*TGYVVIGVGEQ Trigger: TTGCTCCCCTACCCCAATAACTACATATCCAGTTCAGGAAACAAAGTGACCAGTCCTAAGAAGAGTGTTACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
||
| 3UTR-3UTR CAA 90 bp | CCAAGATGCTGGCAAGAAAATTCAAAGCAAGGTACTAATGCTCAACATGGCTTTCTGGCTCAACAAATGTaGGTATACAGGATTTTTCAC | + |
|
Preference number: 3 (lower is better) Translates to: PRCWQENSKQGTNAQHGFLAQQM*VYRIFH Trigger: GTGAAAAATCCTGTATACCAACATTTGTTGAGCCAG...AAAGCCATGTTGAGCATTAGTACCTTGCTTTGAATTTTCTTGCCAGCATCTTGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
||
| CDS-3UTR CCA 90 bp | CCAAGGGGCCTTATCCCAGAAAGGCACATGCTACAGTGGCCCCCACCCATACCCCTGCCCAGCAGGCCCTaGAGGCTGGTACAGAAGTGG | + |
|
Preference number: 4 (lower is better) Translates to: PRGLIPERHMLQWPPPIPLPSRP*RLVQKW Trigger: CCACTTCTGTACCAGCCTCCAGGGCCTGCTGGGCAG...GGGTATGGGTGGGGGCCACTGTAGCATGTGCCTTTCTGGGATAAGGCCCCTTGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046506.7 |
||
| CDS-3UTR TCA 90 bp | CACTCCCCATCCAAGGCTGAGGAGGGCAGAGCTCCCATGGTCTGGTTCCTGGCTTGGCAGCCTGACGGTTaGGGCCACGCAAGTAACACA | + |
|
Preference number: 4 (lower is better) Translates to: HSPSKAEEGRAPMVWFLAWQPDG*GHASNT Trigger: TGTGTTACTTGCGTGGCCTCAACCGTCAGGCTGCCA...AGCCAGGAACCAGACCATGGGAGCTCTGCCCTCCTCAGCCTTGGATGGGGAGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046506.7 |
||
| CDS-3UTR TCA 90 bp | ATGCCACATGAGGGACTGAGTGAGTACTGGCAAGTGGCAGGCAGAGAGCAGGAGTCAGCTGTGGCAGCCTaGCGGTTGAGGCCACGCAAG | + |
|
Preference number: 4 (lower is better) Translates to: MPHEGLSEYWQVAGREQESAVAA*RLRPRK Trigger: CTTGCGTGGCCTCAACCGTCAGGCTGCCACAGCTGA...CTCCTGCTCTCTGCCTGCCACTTGCCAGTACTCACTCAGTCCCTCATGTGGCAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046506.7 |
||
| CDS-3UTR TCA 90 bp | GCCAAGGGGCCTTATCCCAGAAAGGCACATGCTACAGTGGCCCCCACCCATACCGCTCCAGGTAGCGGGTaGGGTCATAGGTTTTCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: AKGPYPRKAHATVAPTHTAPGSG*GHRFSG Trigger: TCCAGAAAACCTATGACCTCACCCGCTACCTGGAGC...GGTATGGGTGGGGGCCACTGTAGCATGTGCCTTTCTGGGATAAGGCCCCTTGGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046506.7 |
||
| CDS-3UTR TCA 90 bp | CAAGGGGCCTTATCCCAGAAAGGCACATGCTACAGTGGCCCCCACCCATACCCTCAAGTGCAGGGTGACTaGAGCTGCTGGAGGCTGCAT | + |
|
Preference number: 4 (lower is better) Translates to: QGALSQKGTCYSGPHPYPQVQGD*SCWRLH Trigger: ATGCAGCCTCCAGCAGCTTCAGTCACCCTGCACTTG...AGGGTATGGGTGGGGGCCACTGTAGCATGTGCCTTTCTGGGATAAGGCCCCTTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046506.7 |
||
| CDS-3UTR GCA 90 bp | CTTATTGAGTTACACTCCCCATCCAAGGCTGAGGAGGGCAGAGCTCCCATGGTCGGCACTGCAGGGAGGTaGCACAGCACCGTGCATAGG | + |
|
Preference number: 4 (lower is better) Translates to: LIELHSPSKAEEGRAPMVGTAGR*HSTVHR Trigger: CCTATGCACGGTGCTGTGGCACCTCCCTGCAGTGCC...GACCATGGGAGCTCTGCCCTCCTCAGCCTTGGATGGGGAGTGTAACTCAATAAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046506.7 |
||
| CDS-3UTR GCA 90 bp | AGCCAAGGGGCCTTATCCCAGAAAGGCACATGCTACAGTGGCCCCCACCCATACCCATGGGCCTCCAAGTaGAGGGTGACTGAAGCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: SQGALSQKGTCYSGPHPYPWASK*RVTEAA Trigger: AGCAGCTTCAGTCACCCTGCACTTGGAGGCCCATGG...GTATGGGTGGGGGCCACTGTAGCATGTGCCTTTCTGGGATAAGGCCCCTTGGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046506.7 |
||
| CDS-3UTR GCA 90 bp | CTTATTGAGTTACACTCCCCATCCAAGGCTGAGGAGGGCAGAGCTCCCATGGTCCGCCATAGCCAGGTCTaGAGCTCCTTCAGCAGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: LIELHSPSKAEEGRAPMVRHSQV*SSFSSQ Trigger: CTGGCTGCTGAAGGAGCTGCAGACCTGGCTATGGCG...GACCATGGGAGCTCTGCCCTCCTCAGCCTTGGATGGGGAGTGTAACTCAATAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046506.7 |
||
| CDS-3UTR GCA 90 bp | GGGCTTATTGAGTTACACTCCCCATCCAAGGCTGAGGAGGGCAGAGCTCCCATGATTAAGAGCTGGCACTaGAGGGAGGTGCCACAGCAC | + |
|
Preference number: 4 (lower is better) Translates to: GLIELHSPSKAEEGRAPMIKSWH*REVPQH Trigger: GTGCTGTGGCACCTCCCTGCAGTGCCAGCTCTTAAT...CATGGGAGCTCTGCCCTCCTCAGCCTTGGATGGGGAGTGTAACTCAATAAGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046506.7 |
||
| CDS-3UTR CCA 90 bp | TCCAAGGCTGAGGAGGGCAGAGCTCCCATGGTCTGGTTCCTGGCTCAACAAATGCATAGGTTTTCTGGATaGAGGGGCCAGGGCCTGGAT | + |
|
Preference number: 4 (lower is better) Translates to: SKAEEGRAPMVWFLAQQMHRFSG*RGQGLD Trigger: ATCCAGGCCCTGGCCCCTCCATCCAGAAAACCTATG...CATTTGTTGAGCCAGGAACCAGACCATGGGAGCTCTGCCCTCCTCAGCCTTGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046506.7 |
||
| 3UTR CAA 72 bp | CCCCAGACCCTAGGACTTTCTGAGCTAGAGGGCTTATaGAGTTACACTCCCCATCCAAGGCTGAGGAGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: PQTLGLSELEGL*SYTPHPRLRRA Trigger: TGCCCTCCTCAGCCTTGGATGGGGAGTGTAACTCAATAAGCCCTCTAGCTCAGAAAGTCCTAGGGTCTGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
||
| 3UTR CAA 72 bp | ATGGCTTTTGTTTTCCACCCTGTGCCACCAACTGTCTaGGTGACTGCTGGGTCTGGTCTGTCCCTGCCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: MAFVFHPVPPTV*VTAGSGLSLPF Trigger: GAAGGGCAGGGACAGACCAGACCCAGCAGTCACCAAGACAGTTGGTGGCACAGGGTGGAAAACAAAAGCCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
||
| 3UTR CAA 72 bp | GAAGCTGCTGGAGGCTGCATCTTCTTCTTAAGCCGGTaGAAGTCCTTGGCTGAACGCCATAGCCAGGTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: EAAGGCIFFLSR*KSLAERHSQVC Trigger: GCAGACCTGGCTATGGCGTTCAGCCAAGGACTTCAACCGGCTTAAGAAGAAGATGCAGCCTCCAGCAGCTTC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
||
| CDS-3UTR GCA 90 bp | CAACATGGCTTTTGTTTTCCACCCTGTGCCACCAACTGTCTTGGTGACTGCTGGCCTGGGCAGAGTTTCTaGCCCCAGTCGAGGAGGATT | + |
|
Preference number: 4 (lower is better) Translates to: QHGFCFPPCATNCLGDCWPGQSF*PQSRRI Trigger: AATCCTCCTCGACTGGGGGCAGAAACTCTGCCCAGG...CCAGCAGTCACCAAGACAGTTGGTGGCACAGGGTGGAAAACAAAAGCCATGTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046506.7 |
||
| CDS-3UTR CCA 90 bp | CTGAGGAGGGCAGAGCTCCCATGGTCTGGTTCCTGGCTCAACAAATGTTGGTATTGTGCGATTAAGAGCTaGCACTGCAGGGAGGTGCCA | + |
|
Preference number: 4 (lower is better) Translates to: LRRAELPWSGSWLNKCWYCAIKS*HCREVP Trigger: TGGCACCTCCCTGCAGTGCCAGCTCTTAATCGCACA...ATACCAACATTTGTTGAGCCAGGAACCAGACCATGGGAGCTCTGCCCTCCTCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046506.7 |
||
| CDS-3UTR CCA 90 bp | TGGTTCCTGGCTCAACAAATGTTGGTATACAGGATTTTTCACCCCACAATGGAAGCCAGGGGCCCAGGCTaGCTCAGTCCCTGGCAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: WFLAQQMLVYRIFHPTMEARGPG*LSPWQR Trigger: CCTCTGCCAGGGACTGAGCCAGCCTGGGCCCCTGGC...TTCCATTGTGGGGTGAAAAATCCTGTATACCAACATTTGTTGAGCCAGGAACCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046506.7 |
||
| CDS-3UTR GCA 90 bp | ACTAATGCTCAACATGGCTTTTGTTTTCCACCCTGTGCCACCAACTGTCTTGGTCGTCGCCATGACACCTaGAATGCTGCCCAGCAGGCC | + |
|
Preference number: 4 (lower is better) Translates to: TNAQHGFCFPPCATNCLGRRHDT*NAAQQA Trigger: GGCCTGCTGGGCAGCATTGCAGGTGTCATGGCGACG...ACCAAGACAGTTGGTGGCACAGGGTGGAAAACAAAAGCCATGTTGAGCATTAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046506.7 |
||
| CDS-3UTR CCA 90 bp | GTACTAATGCTCAACATGGCTTTTGTTTTCCACCCTGTGCCACCAACTGTCTTGCAGAGGCTGGGGCAGTaGGTAGCCAAGCGTCGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: VLMLNMAFVFHPVPPTVLQRLGQ*VAKRRH Trigger: ATGGCGACGCTTGGCTACCCACTGCCCCAGCCTCTG...CAAGACAGTTGGTGGCACAGGGTGGAAAACAAAAGCCATGTTGAGCATTAGTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046506.7 |
||
| CDS-3UTR GCA 90 bp | CTACTGCAATGTAAACTTTCAGGAAACCCTGTGGCTATGGCTATGGCTGCCCTCGGTGCCACAGCACCGTaGATAGGCAAGCTAACATCC | + |
|
Preference number: 4 (lower is better) Translates to: LLQCKLSGNPVAMAMAALGATAP*IGKLTS Trigger: GGATGTTAGCTTGCCTATGCACGGTGCTGTGGCACC...GAGGGCAGCCATAGCCATAGCCACAGGGTTTCCTGAAAGTTTACATTGCAGTAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046506.7 |
||
| CDS-3UTR CCA 90 bp | GCACCAAGATGCTGGCAAGAAAATTCAAAGCAAGGTACTAATGCTCAACATGGCGGAGGGGCCAGGGCCTaGATCTCCTGTGCGATTAAG | + |
|
Preference number: 4 (lower is better) Translates to: APRCWQENSKQGTNAQHGGGARA*ISCAIK Trigger: CTTAATCGCACAGGAGATCCAGGCCCTGGCCCCTCC...GCCATGTTGAGCATTAGTACCTTGCTTTGAATTTTCTTGCCAGCATCTTGGTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046506.7 |
||
| CDS-3UTR CCA 90 bp | CCAAGATGCTGGCAAGAAAATTCAAAGCAAGGTACTAATGCTCAACATGGCTTTGCAGGCCCTGGAGGCTaGTACAGAAGTGGGCCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: PRCWQENSKQGTNAQHGFAGPGG*YRSGPG Trigger: GCCTGGCCCACTTCTGTACCAGCCTCCAGGGCCTGC...AAAGCCATGTTGAGCATTAGTACCTTGCTTTGAATTTTCTTGCCAGCATCTTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046506.7 |
||
| CDS-3UTR TCA 90 bp | CCAAGATGCTGGCAAGAAAATTCAAAGCAAGGTACTAATGCTCAACATGGCTTTGCCACACTTCCAAGTTaGCCGTGGCCCTGGGCAGAG | + |
|
Preference number: 4 (lower is better) Translates to: PRCWQENSKQGTNAQHGFATLPS*PWPWAE Trigger: CTCTGCCCAGGGCCACGGTCAACTTGGAAGTGTGGC...AAAGCCATGTTGAGCATTAGTACCTTGCTTTGAATTTTCTTGCCAGCATCTTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046506.7 |
||
| 3UTR CAA 72 bp | AGAGCTCCCATGGTCTGGTTCCTGGCTCAACAAATGTaGGTATACAGGATTTTTCACCCCACAATGGAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: RAPMVWFLAQQM*VYRIFHPTMEA Trigger: TGCTTCCATTGTGGGGTGAAAAATCCTGTATACCAACATTTGTTGAGCCAGGAACCAGACCATGGGAGCTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000046506.7 ENSMUST00000138090.2 |
||
| CDS-3UTR CAA 90 bp | TGTTTTCCACCCTGTGCCACCAACTGTCTTGGTGACTGCTGGGTCTGGTCTGTCCGCCACACTTCCAAGTaGACCGTGGCCCTGGGCAGA | + |
|
Preference number: 5 (lower is better) Translates to: CFPPCATNCLGDCWVWSVRHTSK*TVALGR Trigger: TCTGCCCAGGGCCACGGTCAACTTGGAAGTGTGGCG...GACAGACCAGACCCAGCAGTCACCAAGACAGTTGGTGGCACAGGGTGGAAAACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046506.7 |
||
| CDS-3UTR CAA 90 bp | GCCAAGGGGCCTTATCCCAGAAAGGCACATGCTACAGTGGCCCCCACCCATACCCTGCCCTCCTTTCTTTaGGCAGGTTCTTCCTGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: AKGPYPRKAHATVAPTHTLPSFL*AGSSCS Trigger: GGAGCAGGAAGAACCTGCCAAAAGAAAGGAGGGCAG...GGTATGGGTGGGGGCCACTGTAGCATGTGCCTTTCTGGGATAAGGCCCCTTGGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000138090.2 |
||
| CDS-3UTR CAA 90 bp | CAACATGGCTTTTGTTTTCCACCCTGTGCCACCAACTGTCTTGGTGACTGCTGGAGCCGGTTGAAGTCCTaGGCTGAACGCCATAGCCAG | + |
|
Preference number: 5 (lower is better) Translates to: QHGFCFPPCATNCLGDCWSRLKS*AERHSQ Trigger: CTGGCTATGGCGTTCAGCCAAGGACTTCAACCGGCT...CCAGCAGTCACCAAGACAGTTGGTGGCACAGGGTGGAAAACAAAAGCCATGTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046506.7 |
||
| CDS-3UTR CAA 90 bp | TTCCACTTCCTCAGGCATCGCCTCGATGCCCACTGTACGATTTCCCCAGACCCTTTCTTCTTAAGCCGGTaGAAGTCCTTGGCTGAACGC | + |
|
Preference number: 5 (lower is better) Translates to: FHFLRHRLDAHCTISPDPFFLSR*KSLAER Trigger: GCGTTCAGCCAAGGACTTCAACCGGCTTAAGAAGAA...AGGGTCTGGGGAAATCGTACAGTGGGCATCGAGGCGATGCCTGAGGAAGTGGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046506.7 |
||
| CDS-3UTR CAA 90 bp | AATGCTCAACATGGCTTTTGTTTTCCACCCTGTGCCACCAACTGTCTTGGTGACCCCAGTCGAGGAGGATaGAAGTCAGGCTCGTTGAAA | + |
|
Preference number: 5 (lower is better) Translates to: NAQHGFCFPPCATNCLGDPSRGG*KSGSLK Trigger: TTTCAACGAGCCTGACTTCAATCCTCCTCGACTGGG...GTCACCAAGACAGTTGGTGGCACAGGGTGGAAAACAAAAGCCATGTTGAGCATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046506.7 |
||
| CDS-3UTR CAA 90 bp | TGGTTCCTGGCTCAACAAATGTTGGTATACAGGATTTTTCACCCCACAATGGAAAGCCGCAGCCTGTCATaGAGGCTTCGCCACACTTCC | + |
|
Preference number: 5 (lower is better) Translates to: WFLAQQMLVYRIFHPTMESRSLS*RLRHTS Trigger: GGAAGTGTGGCGAAGCCTCAATGACAGGCTGCGGCT...TTCCATTGTGGGGTGAAAAATCCTGTATACCAACATTTGTTGAGCCAGGAACCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046506.7 |
||