RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CLCA3A2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028262

Ensembl transcript IDs: ENSMUST00000029929.12, ENSMUST00000197013.2, ENSMUST00000199029.2

Found 132 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATTGAACTCAGGACCTCTGGAAGAGCAATCAGTGCTCTTAACCACTaGGCCATCTCTTCAGCCCTACAAATTACTTTCATAGTCCCTCTT +
Preference number: 1 (lower is better)
Translates to: IELRTSGRAISALNH*AISSALQITFIVPL
Trigger: AAGAGGGACTATGAAAGTAATTTGTAGGGCTGAAGAGATGGCTCAGTGGTTAAGAGCACTGATTGCTCTTCCAGAGGTCCTGAGTTCAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
3UTR TCA 90 bp ATCTCAATTCTAATTGTACATCTTGCTGATGCTCTTAAGATCAAATaGTGGTCCCAGGACAGAACCAGACTCAGTGTGATGCCTGCAATT +
Preference number: 1 (lower is better)
Translates to: ISILIVHLADALKIK*WSQDRTRLSVMPAI
Trigger: AATTGCAGGCATCACACTGAGTCTGGTTCTGTCCTGGGACCATCATTTGATCTTAAGAGCATCAGCAAGATGTACAATTAGAATTGAGAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
3UTR TCA 90 bp CTCGGGATTTTCAACTTTGAATATGAACTTCTATATTACAAGTGTTaGCAGGCAGCCTTTGAGTGTAGTAAAGTCATTCTAAAGCAACAG +
Preference number: 1 (lower is better)
Translates to: LGIFNFEYELLYYKC*QAAFECSKVILKQQ
Trigger: CTGTTGCTTTAGAATGACTTTACTACACTCAAAGGCTGCCTGTCAACACTTGTAATATAGAAGTTCATATTCAAAGTTGAAAATCCCGAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
3UTR-3UTR TCA 90 bp ACATTCTTGCTAGTCACTTTGTGTACTGATAAAACAACTTCAGCCAATGACAAACTATATTACAAGTGTTaGCAGGCAGCCTTTGAGTGT +
Preference number: 2 (lower is better)
Translates to: TFLLVTLCTDKTTSANDKLYYKC*QAAFEC
Trigger: ACACTCAAAGGCTGCCTGTCAACACTTGTAATATAG...TTTGTCATTGGCTGAAGTTGTTTTATCAGTACACAAAGTGACTAGCAAGAATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
3UTR TCA 72 bp CAGATGGTTATGAGCTACTATGTGGTTTCTGGGAATTaGACTCAGGACCTCTGGAAGAGCAATCAGTGCTCT +
Preference number: 3 (lower is better)
Translates to: QMVMSYYVVSGN*TQDLWKSNQCS
Trigger: AGAGCACTGATTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGAAACCACATAGTAGCTCATAACCATCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
3UTR TCA 72 bp AGGACCTCTGGAAGAGCAATCAGTGCTCTTAACCACTaGGCCATCTCTTCAGCCCTACAAATTACTTTCATA +
Preference number: 3 (lower is better)
Translates to: RTSGRAISALNH*AISSALQITFI
Trigger: TATGAAAGTAATTTGTAGGGCTGAAGAGATGGCTCAGTGGTTAAGAGCACTGATTGCTCTTCCAGAGGTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
3UTR CCA 72 bp CGCATTACAGATGGTTATGAGCTACTATGTGGTTTCTaGGAATTGAACTCAGGACCTCTGGAAGAGCAATCA +
Preference number: 3 (lower is better)
Translates to: RITDGYELLCGF*ELNSGPLEEQS
Trigger: TGATTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGAAACCACATAGTAGCTCATAACCATCTGTAATGCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
3UTR CCA 72 bp ACAGTTGCTGTCTTCAGACACACCAGAAGAGGACATTaGATCGCATTACAGATGGTTATGAGCTACTATGTG +
Preference number: 3 (lower is better)
Translates to: TVAVFRHTRRGH*IALQMVMSYYV
Trigger: CACATAGTAGCTCATAACCATCTGTAATGCGATCCAATGTCCTCTTCTGGTGTGTCTGAAGACAGCAACTGT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
3UTR TCA 72 bp CTAATTGTACATCTTGCTGATGCTCTTAAGATCAAATaGTGGTCCCAGGACAGAACCAGACTCAGTGTGATG +
Preference number: 3 (lower is better)
Translates to: LIVHLADALKIK*WSQDRTRLSVM
Trigger: CATCACACTGAGTCTGGTTCTGTCCTGGGACCATCATTTGATCTTAAGAGCATCAGCAAGATGTACAATTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
3UTR-3UTR CAA 90 bp ACATTCTTGCTAGTCACTTTGTGTACTGATAAAACAACTTCAGCCAATGACAAATGTGGTTTCTGGGAATaGAACTCAGGACCTCTGGAA +
Preference number: 3 (lower is better)
Translates to: TFLLVTLCTDKTTSANDKCGFWE*NSGPLE
Trigger: TTCCAGAGGTCCTGAGTTCAATTCCCAGAAACCACA...TTTGTCATTGGCTGAAGTTGTTTTATCAGTACACAAAGTGACTAGCAAGAATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
3UTR-3UTR CAA 90 bp ACATTCTTGCTAGTCACTTTGTGTACTGATAAAACAACTTCAGCCAATGACAAAGTTGACAGGCAGCCTTaGAGTGTAGTAAAGTCATTC +
Preference number: 3 (lower is better)
Translates to: TFLLVTLCTDKTTSANDKVDRQP*SVVKSF
Trigger: GAATGACTTTACTACACTCAAAGGCTGCCTGTCAAC...TTTGTCATTGGCTGAAGTTGTTTTATCAGTACACAAAGTGACTAGCAAGAATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR GCA 90 bp TCAGGACCTCTGGAAGAGCAATCAGTGCTCTTAACCACTGAGCCATCTCTTCAGTCCAACTGCAGAGCCTaGTGGGAGACGCTGCCACTT +
Preference number: 4 (lower is better)
Translates to: SGPLEEQSVLLTTEPSLQSNCRA*WETLPL
Trigger: AAGTGGCAGCGTCTCCCAGCAGGCTCTGCAGTTGGA...CTGAAGAGATGGCTCAGTGGTTAAGAGCACTGATTGCTCTTCCAGAGGTCCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR CCA 90 bp TCAGGACCTCTGGAAGAGCAATCAGTGCTCTTAACCACTGAGCCATCTCTTCAGGAGCCTTTCGTCCTCTaGCACACTGGGGTTAATGGC +
Preference number: 4 (lower is better)
Translates to: SGPLEEQSVLLTTEPSLQEPFVL*HTGVNG
Trigger: GCCATTAACCCCAGTGTGCCAGAGGACGAAAGGCTC...CTGAAGAGATGGCTCAGTGGTTAAGAGCACTGATTGCTCTTCCAGAGGTCCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR TCA 90 bp TCAGGACCTCTGGAAGAGCAATCAGTGCTCTTAACCACTGAGCCATCTCTTCAGTCTCCATGTTGCAGGTaGGGATCCGCAACTATGACG +
Preference number: 4 (lower is better)
Translates to: SGPLEEQSVLLTTEPSLQSPCCR*GSATMT
Trigger: CGTCATAGTTGCGGATCCTCACCTGCAACATGGAGA...CTGAAGAGATGGCTCAGTGGTTAAGAGCACTGATTGCTCTTCCAGAGGTCCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR TCA 90 bp TCAGGACCTCTGGAAGAGCAATCAGTGCTCTTAACCACTGAGCCATCTCTTCAGCCCATAGCTCCAGGGTaGCTTGATGTCCATGTTCAG +
Preference number: 4 (lower is better)
Translates to: SGPLEEQSVLLTTEPSLQPIAPG*LDVHVQ
Trigger: CTGAACATGGACATCAAGTCACCCTGGAGCTATGGG...CTGAAGAGATGGCTCAGTGGTTAAGAGCACTGATTGCTCTTCCAGAGGTCCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR CCA 90 bp TTGTACATCTTGCTGATGCTCTTAAGATCAAATGATGGTCCCAGGACAGAACCACCCAGAGCGATGGTGTaGATGATGGCACCGCTGCGA +
Preference number: 4 (lower is better)
Translates to: LYILLMLLRSNDGPRTEPPRAMV*MMAPLR
Trigger: TCGCAGCGGTGCCATCATCCACACCATCGCTCTGGG...TGGTTCTGTCCTGGGACCATCATTTGATCTTAAGAGCATCAGCAAGATGTACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR CCA 90 bp TCAGGACCTCTGGAAGAGCAATCAGTGCTCTTAACCACTGAGCCATCTCTTCAGAGACCCAGAGGATGCTaGCTCACTCTGATGATGTAT +
Preference number: 4 (lower is better)
Translates to: SGPLEEQSVLLTTEPSLQRPRGC*LTLMMY
Trigger: ATACATCATCAGAGTGAGCCAGCATCCTCTGGGTCT...CTGAAGAGATGGCTCAGTGGTTAAGAGCACTGATTGCTCTTCCAGAGGTCCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR TCA 90 bp TTGTACATCTTGCTGATGCTCTTAAGATCAAATGATGGTCCCAGGACAGAACCACCCTCCTGTCATGTCTaGCAGAGTCTCCAGTTCTCG +
Preference number: 4 (lower is better)
Translates to: LYILLMLLRSNDGPRTEPPSCHV*QSLQFS
Trigger: CGAGAACTGGAGACTCTGTCAGACATGACAGGAGGG...TGGTTCTGTCCTGGGACCATCATTTGATCTTAAGAGCATCAGCAAGATGTACAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR GCA 90 bp TCAGGACCTCTGGAAGAGCAATCAGTGCTCTTAACCACTGAGCCATCTCTTCAGGGCGGAGCACCTTGTTaGTTCTATAGTGTTCTTTCT +
Preference number: 4 (lower is better)
Translates to: SGPLEEQSVLLTTEPSLQGGAPC*FYSVLS
Trigger: AGAAAGAACACTATAGAAGCAACAAGGTGCTCCGCC...CTGAAGAGATGGCTCAGTGGTTAAGAGCACTGATTGCTCTTCCAGAGGTCCTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR CCA 90 bp TTGTACATCTTGCTGATGCTCTTAAGATCAAATGATGGTCCCAGGACAGAACCAAGCGGTAGCCAGGAGTaGTTCCATGGTGGGACTTCT +
Preference number: 4 (lower is better)
Translates to: LYILLMLLRSNDGPRTEPSGSQE*FHGGTS
Trigger: AGAAGTCCCACCATGGAACCACTCCTGGCTACCGCT...TGGTTCTGTCCTGGGACCATCATTTGATCTTAAGAGCATCAGCAAGATGTACAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR TCA 90 bp TTGTACATCTTGCTGATGCTCTTAAGATCAAATGATGGTCCCAGGACAGAACCAATGGGAGGGGAATTCTaGAAGTCAGCAGACGCCTTG +
Preference number: 4 (lower is better)
Translates to: LYILLMLLRSNDGPRTEPMGGEF*KSADAL
Trigger: CAAGGCGTCTGCTGACTTTCAGAATTCCCCTCCCAT...TGGTTCTGTCCTGGGACCATCATTTGATCTTAAGAGCATCAGCAAGATGTACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR TCA 90 bp TTGTACATCTTGCTGATGCTCTTAAGATCAAATGATGGTCCCAGGACAGAACCACAGCCTCCAGGTCTGTaGCTTTACTTGGTGGGAACA +
Preference number: 4 (lower is better)
Translates to: LYILLMLLRSNDGPRTEPQPPGL*LYLVGT
Trigger: TGTTCCCACCAAGTAAAGTCACAGACCTGGAGGCTG...TGGTTCTGTCCTGGGACCATCATTTGATCTTAAGAGCATCAGCAAGATGTACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR GCA 90 bp TCAGGACCTCTGGAAGAGCAATCAGTGCTCTTAACCACTGAGCCATCTCTTCAGTGTACTGTTTATCCATaGCCCTGCTCTGACATTGAA +
Preference number: 4 (lower is better)
Translates to: SGPLEEQSVLLTTEPSLQCTVYP*PCSDIE
Trigger: TTCAATGTCAGAGCAGGGGCATGGATAAACAGTACA...CTGAAGAGATGGCTCAGTGGTTAAGAGCACTGATTGCTCTTCCAGAGGTCCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR CCA 90 bp TCAGGACCTCTGGAAGAGCAATCAGTGCTCTTAACCACTGAGCCATCTCTTCAGCTTGGACATCTGGTCTaGGTGGATTCAGTACAATTT +
Preference number: 4 (lower is better)
Translates to: SGPLEEQSVLLTTEPSLQLGHLV*VDSVQF
Trigger: AAATTGTACTGAATCCACCCAGACCAGATGTCCAAG...CTGAAGAGATGGCTCAGTGGTTAAGAGCACTGATTGCTCTTCCAGAGGTCCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR TCA 90 bp ACATTCTTGCTAGTCACTTTGTGTACTGATAAAACAACTTCAGCCAATGACAAACCACCTTCTTGCCTGTaGTGCTGGCGGAGCACCTTG +
Preference number: 4 (lower is better)
Translates to: TFLLVTLCTDKTTSANDKPPSCL*CWRSTL
Trigger: CAAGGTGCTCCGCCAGCATCACAGGCAAGAAGGTGG...TTTGTCATTGGCTGAAGTTGTTTTATCAGTACACAAAGTGACTAGCAAGAATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR GCA 90 bp TTGTACATCTTGCTGATGCTCTTAAGATCAAATGATGGTCCCAGGACAGAACCACCAAGTACCTGTCTCTaGAGTGCCCGGTATTTGAAG +
Preference number: 4 (lower is better)
Translates to: LYILLMLLRSNDGPRTEPPSTCL*SARYLK
Trigger: CTTCAAATACCGGGCACTGCAGAGACAGGTACTTGG...TGGTTCTGTCCTGGGACCATCATTTGATCTTAAGAGCATCAGCAAGATGTACAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR GCA 90 bp TTGTACATCTTGCTGATGCTCTTAAGATCAAATGATGGTCCCAGGACAGAACCACATGGTGGGACTTCTTaGTCGAGTGGTCACTGTCAT +
Preference number: 4 (lower is better)
Translates to: LYILLMLLRSNDGPRTEPHGGTS*SSGHCH
Trigger: ATGACAGTGACCACTCGAGCAAGAAGTCCCACCATG...TGGTTCTGTCCTGGGACCATCATTTGATCTTAAGAGCATCAGCAAGATGTACAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR CCA 90 bp TTGTACATCTTGCTGATGCTCTTAAGATCAAATGATGGTCCCAGGACAGAACCACCTGCCTGGAGTCCATaGCAAATTGAAGTTCCACCA +
Preference number: 4 (lower is better)
Translates to: LYILLMLLRSNDGPRTEPPAWSP*QIEVPP
Trigger: TGGTGGAACTTCAATTTGCCATGGACTCCAGGCAGG...TGGTTCTGTCCTGGGACCATCATTTGATCTTAAGAGCATCAGCAAGATGTACAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR TCA 90 bp TTGTACATCTTGCTGATGCTCTTAAGATCAAATGATGGTCCCAGGACAGAACCATCCAGACACAGTAAATaGCCCTCCAGAGGTTACTCT +
Preference number: 4 (lower is better)
Translates to: LYILLMLLRSNDGPRTEPSRHSK*PSRGYS
Trigger: AGAGTAACCTCTGGAGGGTCATTTACTGTGTCTGGA...TGGTTCTGTCCTGGGACCATCATTTGATCTTAAGAGCATCAGCAAGATGTACAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR GCA 90 bp ACATTCTTGCTAGTCACTTTGTGTACTGATAAAACAACTTCAGCCAATGACAAAGCTTTGCTCTCCAACTaGAGAGCCTGCTGGGAGACG +
Preference number: 4 (lower is better)
Translates to: TFLLVTLCTDKTTSANDKALLSN*RACWET
Trigger: CGTCTCCCAGCAGGCTCTGCAGTTGGAGAGCAAAGC...TTTGTCATTGGCTGAAGTTGTTTTATCAGTACACAAAGTGACTAGCAAGAATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR CCA 90 bp TTGTACATCTTGCTGATGCTCTTAAGATCAAATGATGGTCCCAGGACAGAACCATCTATGGCTTCTTCTTaGACATCTGGTCTGGGTGGA +
Preference number: 4 (lower is better)
Translates to: LYILLMLLRSNDGPRTEPSMASS*TSGLGG
Trigger: TCCACCCAGACCAGATGTCCAAGAAGAAGCCATAGA...TGGTTCTGTCCTGGGACCATCATTTGATCTTAAGAGCATCAGCAAGATGTACAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
3UTR CAA 72 bp CACAGTTGCTGTCTTCAGACACACCAGAAGAGGACATaGGATCGCATTACAGATGGTTATGAGCTACTATGT +
Preference number: 4 (lower is better)
Translates to: HSCCLQTHQKRT*DRITDGYELLC
Trigger: ACATAGTAGCTCATAACCATCTGTAATGCGATCCAATGTCCTCTTCTGGTGTGTCTGAAGACAGCAACTGTG
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR TCA 90 bp TTGTACATCTTGCTGATGCTCTTAAGATCAAATGATGGTCCCAGGACAGAACCAGTAGGAAGTTTGGAGTaGAGTGTATGTACTGTCCTC +
Preference number: 4 (lower is better)
Translates to: LYILLMLLRSNDGPRTEPVGSLE*SVCTVL
Trigger: GAGGACAGTACATACACTTCACTCCAAACTTCCTAC...TGGTTCTGTCCTGGGACCATCATTTGATCTTAAGAGCATCAGCAAGATGTACAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR CCA 90 bp ACATTCTTGCTAGTCACTTTGTGTACTGATAAAACAACTTCAGCCAATGACAAAAACTGCAGAGCCTGCTaGGAGACGCTGCCACTTGTA +
Preference number: 4 (lower is better)
Translates to: TFLLVTLCTDKTTSANDKNCRAC*ETLPLV
Trigger: TACAAGTGGCAGCGTCTCCCAGCAGGCTCTGCAGTT...TTTGTCATTGGCTGAAGTTGTTTTATCAGTACACAAAGTGACTAGCAAGAATGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR CCA 90 bp ACATTCTTGCTAGTCACTTTGTGTACTGATAAAACAACTTCAGCCAATGACAAAGGAGTGGTTCCATGGTaGGACTTCTTGCTCGAGTGG +
Preference number: 4 (lower is better)
Translates to: TFLLVTLCTDKTTSANDKGVVPW*DFLLEW
Trigger: CCACTCGAGCAAGAAGTCCCACCATGGAACCACTCC...TTTGTCATTGGCTGAAGTTGTTTTATCAGTACACAAAGTGACTAGCAAGAATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR TCA 90 bp TTGTACATCTTGCTGATGCTCTTAAGATCAAATGATGGTCCCAGGACAGAACCATACAGTTCTGCTGCTTaGTTCATTCGAATAAGACGG +
Preference number: 4 (lower is better)
Translates to: LYILLMLLRSNDGPRTEPYSSAA*FIRIRR
Trigger: CCGTCTTATTCGAATGAATCAAGCAGCAGAACTGTA...TGGTTCTGTCCTGGGACCATCATTTGATCTTAAGAGCATCAGCAAGATGTACAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR TCA 90 bp ACATTCTTGCTAGTCACTTTGTGTACTGATAAAACAACTTCAGCCAATGACAAAGGGGGAGGTTTGCGGTaGTCTTTTGGTAGTCACTAC +
Preference number: 4 (lower is better)
Translates to: TFLLVTLCTDKTTSANDKGGGLR*SFGSHY
Trigger: GTAGTGACTACCAAAAGATCACCGCAAACCTCCCCC...TTTGTCATTGGCTGAAGTTGTTTTATCAGTACACAAAGTGACTAGCAAGAATGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR TCA 90 bp ACATTCTTGCTAGTCACTTTGTGTACTGATAAAACAACTTCAGCCAATGACAAACTGGAGGTAATTGCCTaGAATCCTGCCTGGAGTCCA +
Preference number: 4 (lower is better)
Translates to: TFLLVTLCTDKTTSANDKLEVIA*NPAWSP
Trigger: TGGACTCCAGGCAGGATTTCAGGCAATTACCTCCAG...TTTGTCATTGGCTGAAGTTGTTTTATCAGTACACAAAGTGACTAGCAAGAATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR TCA 90 bp ACATTCTTGCTAGTCACTTTGTGTACTGATAAAACAACTTCAGCCAATGACAAAAGCTCCAGGGTGACTTaGTGTCCATGTTCAGCTTCT +
Preference number: 4 (lower is better)
Translates to: TFLLVTLCTDKTTSANDKSSRVT*CPCSAS
Trigger: AGAAGCTGAACATGGACATCAAGTCACCCTGGAGCT...TTTGTCATTGGCTGAAGTTGTTTTATCAGTACACAAAGTGACTAGCAAGAATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR GCA 90 bp TTGTACATCTTGCTGATGCTCTTAAGATCAAATGATGGTCCCAGGACAGAACCAAACTGTCATAGAGATTaGAGAAATATCAGCACCCAG +
Preference number: 4 (lower is better)
Translates to: LYILLMLLRSNDGPRTEPNCHRD*RNISTQ
Trigger: CTGGGTGCTGATATTTCTGCAATCTCTATGACAGTT...TGGTTCTGTCCTGGGACCATCATTTGATCTTAAGAGCATCAGCAAGATGTACAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR CCA 90 bp TTGTACATCTTGCTGATGCTCTTAAGATCAAATGATGGTCCCAGGACAGAACCATTGAAGAATGATTTCTaGCTTTTGTACCGTCCAGGT +
Preference number: 4 (lower is better)
Translates to: LYILLMLLRSNDGPRTEPLKNDF*LLYRPG
Trigger: ACCTGGACGGTACAAAAGCCAGAAATCATTCTTCAA...TGGTTCTGTCCTGGGACCATCATTTGATCTTAAGAGCATCAGCAAGATGTACAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR TCA 90 bp TTGTACATCTTGCTGATGCTCTTAAGATCAAATGATGGTCCCAGGACAGAACCAATATGCTTATGTTCCTaGAATAAACTCTTCCTTGGC +
Preference number: 4 (lower is better)
Translates to: LYILLMLLRSNDGPRTEPICLCS*NKLFLG
Trigger: GCCAAGGAAGAGTTTATTTCAGGAACATAAGCATAT...TGGTTCTGTCCTGGGACCATCATTTGATCTTAAGAGCATCAGCAAGATGTACAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR CCA 90 bp ACATTCTTGCTAGTCACTTTGTGTACTGATAAAACAACTTCAGCCAATGACAAAGTCTGTGACTTTACTTaGTGGGAACACACGAGCATG +
Preference number: 4 (lower is better)
Translates to: TFLLVTLCTDKTTSANDKVCDFT*WEHTSM
Trigger: CATGCTCGTGTGTTCCCACCAAGTAAAGTCACAGAC...TTTGTCATTGGCTGAAGTTGTTTTATCAGTACACAAAGTGACTAGCAAGAATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR TCA 90 bp ACATTCTTGCTAGTCACTTTGTGTACTGATAAAACAACTTCAGCCAATGACAAAGTCATTGTAATCAACTaGGACTTGGTACCCGTGATG +
Preference number: 4 (lower is better)
Translates to: TFLLVTLCTDKTTSANDKVIVIN*DLVPVM
Trigger: CATCACGGGTACCAAGTCTCAGTTGATTACAATGAC...TTTGTCATTGGCTGAAGTTGTTTTATCAGTACACAAAGTGACTAGCAAGAATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR GCA 90 bp ACATTCTTGCTAGTCACTTTGTGTACTGATAAAACAACTTCAGCCAATGACAAAAATTGCCTGAAATCCTaGCTGGAGTCCATGGCAAAT +
Preference number: 4 (lower is better)
Translates to: TFLLVTLCTDKTTSANDKNCLKS*LESMAN
Trigger: ATTTGCCATGGACTCCAGGCAGGATTTCAGGCAATT...TTTGTCATTGGCTGAAGTTGTTTTATCAGTACACAAAGTGACTAGCAAGAATGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR GCA 90 bp ACATTCTTGCTAGTCACTTTGTGTACTGATAAAACAACTTCAGCCAATGACAAAAAACTTGACAGCCTGTaGAATGTTGGAGACCTCAGA +
Preference number: 4 (lower is better)
Translates to: TFLLVTLCTDKTTSANDKKLDSL*NVGDLR
Trigger: TCTGAGGTCTCCAACATTGCACAGGCTGTCAAGTTT...TTTGTCATTGGCTGAAGTTGTTTTATCAGTACACAAAGTGACTAGCAAGAATGT
39% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR CCA 90 bp ACATTCTTGCTAGTCACTTTGTGTACTGATAAAACAACTTCAGCCAATGACAAATTCTTCTTGGACATCTaGTCTGGGTGGATTCAGTAC +
Preference number: 4 (lower is better)
Translates to: TFLLVTLCTDKTTSANDKFFLDI*SGWIQY
Trigger: GTACTGAATCCACCCAGACCAGATGTCCAAGAAGAA...TTTGTCATTGGCTGAAGTTGTTTTATCAGTACACAAAGTGACTAGCAAGAATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR GCA 90 bp ACATTCTTGCTAGTCACTTTGTGTACTGATAAAACAACTTCAGCCAATGACAAACATCCCACGTGCTTCTaGGATTGCACATTTTGTTTT +
Preference number: 4 (lower is better)
Translates to: TFLLVTLCTDKTTSANDKHPTCF*DCTFCF
Trigger: AAAACAAAATGTGCAATCGCAGAAGCACGTGGGATG...TTTGTCATTGGCTGAAGTTGTTTTATCAGTACACAAAGTGACTAGCAAGAATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR GCA 90 bp ACATTCTTGCTAGTCACTTTGTGTACTGATAAAACAACTTCAGCCAATGACAAAGGTCTTCTTTGTCCATaGTTCCAGATTTATCCAGCA +
Preference number: 4 (lower is better)
Translates to: TFLLVTLCTDKTTSANDKGLLCP*FQIYPA
Trigger: TGCTGGATAAATCTGGAAGCATGGACAAAGAAGACC...TTTGTCATTGGCTGAAGTTGTTTTATCAGTACACAAAGTGACTAGCAAGAATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR GCA 90 bp ACATTCTTGCTAGTCACTTTGTGTACTGATAAAACAACTTCAGCCAATGACAAAACCAGCTTCATTGTATaGCTGGATTGCAATGTAGAG +
Preference number: 4 (lower is better)
Translates to: TFLLVTLCTDKTTSANDKTSFIV*LDCNVE
Trigger: CTCTACATTGCAATCCAGGCATACAATGAAGCTGGT...TTTGTCATTGGCTGAAGTTGTTTTATCAGTACACAAAGTGACTAGCAAGAATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR CCA 90 bp ACATTCTTGCTAGTCACTTTGTGTACTGATAAAACAACTTCAGCCAATGACAAATGTCTGTATTTTGTCTaGGATAAATGTACATTTGGG +
Preference number: 4 (lower is better)
Translates to: TFLLVTLCTDKTTSANDKCLYFV*DKCTFG
Trigger: CCCAAATGTACATTTATCCCAGACAAAATACAGACA...TTTGTCATTGGCTGAAGTTGTTTTATCAGTACACAAAGTGACTAGCAAGAATGT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS TCA 90 bp TCTCCAGTTCTCGGGCAGCAGAAGGCCCCAGAGCGATGGTGTGGATaGTGGCACCGCTGCGAGAGACGGCCTCAAAGCAGGAACTTATTC +
Preference number: 5 (lower is better)
Translates to: SPVLGQQKAPERWCG*WHRCERRPQSRNLF
Trigger: GAATAAGTTCCTGCTTTGAGGCCGTCTCTCGCAGCGGTGCCATCATCCACACCATCGCTCTGGGGCCTTCTGCTGCCCGAGAACTGGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS CCA 90 bp TCAGCCTCCAGGTCTGTGACTTTACTTGGTGGGAACACACGAGCATaGTCGCCATCAGGGGGCGCTCCAGACACAGTAAATGACCCTCCA +
Preference number: 5 (lower is better)
Translates to: SASRSVTLLGGNTRA*SPSGGAPDTVNDPP
Trigger: TGGAGGGTCATTTACTGTGTCTGGAGCGCCCCCTGATGGCGACCATGCTCGTGTGTTCCCACCAAGTAAAGTCACAGACCTGGAGGCTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000199029.2
CDS TCA 90 bp CACACGAGCATGGTCGCCATCAGGGGGCGCTCCAGACACAGTAAATaGCCCTCCAGAGGTTACTCTGTTGAAGTCCTCCACTGTAGCTTC +
Preference number: 5 (lower is better)
Translates to: HTSMVAIRGRSRHSK*PSRGYSVEVLHCSF
Trigger: GAAGCTACAGTGGAGGACTTCAACAGAGTAACCTCTGGAGGGTCATTTACTGTGTCTGGAGCGCCCCCTGATGGCGACCATGCTCGTGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000199029.2
CDS GCA 90 bp TCGTATCCATTGCTGTTGAGATGCACCATGGAGCTCTCTGTGTTCTaGAGGAGATGCAGGGTGAGGAACAGAAGGACCTGCAGCCCTGGC +
Preference number: 5 (lower is better)
Translates to: SYPLLLRCTMELSVF*RRCRVRNRRTCSPG
Trigger: GCCAGGGCTGCAGGTCCTTCTGTTCCTCACCCTGCATCTCCTGCAGAACACAGAGAGCTCCATGGTGCATCTCAACAGCAATGGATACGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS CCA 90 bp AGGGTACTGGGCTGTGCTCTGACTCATGTGAGCGGTAGCCAGGAGTaGTTCCATGGTGGGACTTCTTGCTCGAGTGGTCACTGTCATTGT +
Preference number: 5 (lower is better)
Translates to: RVLGCALTHVSGSQE*FHGGTSCSSGHCHC
Trigger: ACAATGACAGTGACCACTCGAGCAAGAAGTCCCACCATGGAACCACTCCTGGCTACCGCTCACATGAGTCAGAGCACAGCCCAGTACCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000197013.2
CDS GCA 90 bp GCCGACGGTACTGTCCACAGGTACTGTACTGTTTATCCATGCCCCTaGTCTGACATTGAAGGCTTTGCTCTCCAACTGCAGAGCCTGCTG +
Preference number: 5 (lower is better)
Translates to: ADGTVHRYCTVYPCP*SDIEGFALQLQSLL
Trigger: CAGCAGGCTCTGCAGTTGGAGAGCAAAGCCTTCAATGTCAGAGCAGGGGCATGGATAAACAGTACAGTACCTGTGGACAGTACCGTCGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000197013.2
CDS TCA 90 bp GCTTACATGTTTGTTGGCATAGAAACGAAGCCCTCCTGTCATGTCTaGCAGAGTCTCCAGTTCTCGGGCAGCAGAAGGCCCCAGAGCGAT +
Preference number: 5 (lower is better)
Translates to: AYMFVGIETKPSCHV*QSLQFSGSRRPQSD
Trigger: ATCGCTCTGGGGCCTTCTGCTGCCCGAGAACTGGAGACTCTGTCAGACATGACAGGAGGGCTTCGTTTCTATGCCAACAAACATGTAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS GCA 90 bp GGGTTAATGGCAATGACCACACCCTCGTATCCATTGCTGTTGAGATaGACCATGGAGCTCTCTGTGTTCTGCAGGAGATGCAGGGTGAGG +
Preference number: 5 (lower is better)
Translates to: GLMAMTTPSYPLLLR*TMELSVFCRRCRVR
Trigger: CCTCACCCTGCATCTCCTGCAGAACACAGAGAGCTCCATGGTGCATCTCAACAGCAATGGATACGAGGGTGTGGTCATTGCCATTAACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS GCA 90 bp GTCGTTGCCGACGGTACTGTCCACAGGTACTGTACTGTTTATCCATaGCCCTGCTCTGACATTGAAGGCTTTGCTCTCCAACTGCAGAGC +
Preference number: 5 (lower is better)
Translates to: VVADGTVHRYCTVYP*PCSDIEGFALQLQS
Trigger: GCTCTGCAGTTGGAGAGCAAAGCCTTCAATGTCAGAGCAGGGGCATGGATAAACAGTACAGTACCTGTGGACAGTACCGTCGGCAACGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000197013.2
CDS CCA 90 bp CCTGCTCTGACATTGAAGGCTTTGCTCTCCAACTGCAGAGCCTGCTaGGAGACGCTGCCACTTGTAGATGAAATCCTACTGAAAGCGTCG +
Preference number: 5 (lower is better)
Translates to: PALTLKALLSNCRAC*ETLPLVDEILLKAS
Trigger: CGACGCTTTCAGTAGGATTTCATCTACAAGTGGCAGCGTCTCCCAGCAGGCTCTGCAGTTGGAGAGCAAAGCCTTCAATGTCAGAGCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000197013.2
CDS TCA 90 bp TTTATCCAGCACCAAGCACACCACTCGCCTTCTGGACTTGAGCAATaGAAATGTAGGTGGAGGAGGCGCTTCTGTTCCTCTCATGGGAGG +
Preference number: 5 (lower is better)
Translates to: FIQHQAHHSPSGLEQ*KCRWRRRFCSSHGR
Trigger: CCTCCCATGAGAGGAACAGAAGCGCCTCCTCCACCTACATTTTCATTGCTCAAGTCCAGAAGGCGAGTGGTGTGCTTGGTGCTGGATAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR CAA 90 bp TTGTACATCTTGCTGATGCTCTTAAGATCAAATGATGGTCCCAGGACAGAACCACACGCCGGCACGCCCTaGTCACACAGCTGCCTCTCT +
Preference number: 5 (lower is better)
Translates to: LYILLMLLRSNDGPRTEPHAGTP*SHSCLS
Trigger: AGAGAGGCAGCTGTGTGACAAGGGCGTGCCGGCGTG...TGGTTCTGTCCTGGGACCATCATTTGATCTTAAGAGCATCAGCAAGATGTACAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS TCA 90 bp ACTGGAGGTAATTGCCTGAAATCCTGCCTGGAGTCCATGGCAAATTaGAGTTCCACCAGTAGCCTGTTGGGGGAGGTTTGCGGTGATCTT +
Preference number: 5 (lower is better)
Translates to: TGGNCLKSCLESMAN*SSTSSLLGEVCGDL
Trigger: AAGATCACCGCAAACCTCCCCCAACAGGCTACTGGTGGAACTTCAATTTGCCATGGACTCCAGGCAGGATTTCAGGCAATTACCTCCAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS TCA 90 bp ACAGTATCAGCACCTGCCCCATTGTCCCATAGCTCCAGGGTGACTTaGTGTCCATGTTCAGCTTCTATGATGGCTGTGACATTGGCTCCT +
Preference number: 5 (lower is better)
Translates to: TVSAPAPLSHSSRVT*CPCSASMMAVTLAP
Trigger: AGGAGCCAATGTCACAGCCATCATAGAAGCTGAACATGGACATCAAGTCACCCTGGAGCTATGGGACAATGGGGCAGGTGCTGATACTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000199029.2
CDS GCA 90 bp CTCGTGGACCACCTTCTTGCCTGTGATGCTGGCGGAGCACCTTGTTaGTTCTATAGTGTTCTTTCTAGAAATGTAGAAAGGCCGGTCCAC +
Preference number: 5 (lower is better)
Translates to: LVDHLLACDAGGAPC*FYSVLSRNVERPVH
Trigger: GTGGACCGGCCTTTCTACATTTCTAGAAAGAACACTATAGAAGCAACAAGGTGCTCCGCCAGCATCACAGGCAAGAAGGTGGTCCACGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS GCA 90 bp ACTCATGTGAGCGGTAGCCAGGAGTGGTTCCATGGTGGGACTTCTTaGTCGAGTGGTCACTGTCATTGTAATCAACTGAGACTTGGTACC +
Preference number: 5 (lower is better)
Translates to: THVSGSQEWFHGGTS*SSGHCHCNQLRLGT
Trigger: GGTACCAAGTCTCAGTTGATTACAATGACAGTGACCACTCGAGCAAGAAGTCCCACCATGGAACCACTCCTGGCTACCGCTCACATGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000197013.2
CDS CCA 90 bp TCTATGATGGCTGTGACATTGGCTCCTAGAACAGGCAAAAACCCTTaGCTGACCCGTACATACACAATCATCCGGCTAGGGTACTGGGCT +
Preference number: 5 (lower is better)
Translates to: SMMAVTLAPRTGKNP*LTRTYTIIRLGYWA
Trigger: AGCCCAGTACCCTAGCCGGATGATTGTGTATGTACGGGTCAGCCAAGGGTTTTTGCCTGTTCTAGGAGCCAATGTCACAGCCATCATAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000197013.2
CDS CCA 90 bp AATATAATCACCTATAAACTCAGCCTCCAGGTCTGTGACTTTACTTaGTGGGAACACACGAGCATGGTCGCCATCAGGGGGCGCTCCAGA +
Preference number: 5 (lower is better)
Translates to: NIITYKLSLQVCDFT*WEHTSMVAIRGRSR
Trigger: TCTGGAGCGCCCCCTGATGGCGACCATGCTCGTGTGTTCCCACCAAGTAAAGTCACAGACCTGGAGGCTGAGTTTATAGGTGATTATATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000199029.2
CDS TCA 90 bp ACGATCTCAGAACCGGAAGTGCTCTGGTCACTGGAGGTAATTGCCTaGAATCCTGCCTGGAGTCCATGGCAAATTGAAGTTCCACCAGTA +
Preference number: 5 (lower is better)
Translates to: TISEPEVLWSLEVIA*NPAWSPWQIEVPPV
Trigger: TACTGGTGGAACTTCAATTTGCCATGGACTCCAGGCAGGATTTCAGGCAATTACCTCCAGTGACCAGAGCACTTCCGGTTCTGAGATCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS TCA 90 bp GCTCTCCAACTGCAGAGCCTGCTGGGAGACGCTGCCACTTGTAGATaGAATCCTACTGAAAGCGTCGATAAGGCTGCTTACATGTTTGTT +
Preference number: 5 (lower is better)
Translates to: ALQLQSLLGDAATCR*NPTESVDKAAYMFV
Trigger: AACAAACATGTAAGCAGCCTTATCGACGCTTTCAGTAGGATTTCATCTACAAGTGGCAGCGTCTCCCAGCAGGCTCTGCAGTTGGAGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000197013.2
CDS-3UTR CAA 90 bp TTGTACATCTTGCTGATGCTCTTAAGATCAAATGATGGTCCCAGGACAGAACCATCAGCACCTGCCCCATaGTCCCATAGCTCCAGGGTG +
Preference number: 5 (lower is better)
Translates to: LYILLMLLRSNDGPRTEPSAPAP*SHSSRV
Trigger: CACCCTGGAGCTATGGGACAATGGGGCAGGTGCTGA...TGGTTCTGTCCTGGGACCATCATTTGATCTTAAGAGCATCAGCAAGATGTACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS TCA 90 bp AGTACAATTTTACCTGCCCCATTGTCCCATAGCTCCAGGGTGACTTaGTGTCCATGTTCAGCTTCTATGATGGCTGTGACATTGGCTCCT +
Preference number: 5 (lower is better)
Translates to: STILPAPLSHSSRVT*CPCSASMMAVTLAP
Trigger: AGGAGCCAATGTCACAGCCATCATAGAAGCTGAACATGGACATCAAGTCACCCTGGAGCTATGGGACAATGGGGCAGGTAAAATTGTACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197013.2
CDS CCA 90 bp TTGAGTTACCATTTCCTTTATGCTTGGGATGAGCCTTTCGTCCTCTaGCACACTGGGGTTAATGGCAATGACCACACCCTCGTATCCATT +
Preference number: 5 (lower is better)
Translates to: LSYHFLYAWDEPFVL*HTGVNGNDHTLVSI
Trigger: AATGGATACGAGGGTGTGGTCATTGCCATTAACCCCAGTGTGCCAGAGGACGAAAGGCTCATCCCAAGCATAAAGGAAATGGTAACTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR CAA 90 bp TTGTACATCTTGCTGATGCTCTTAAGATCAAATGATGGTCCCAGGACAGAACCAGCCCCTGCTCTGACATaGAAGGCTTTGCTCTCCAAC +
Preference number: 5 (lower is better)
Translates to: LYILLMLLRSNDGPRTEPAPALT*KALLSN
Trigger: GTTGGAGAGCAAAGCCTTCAATGTCAGAGCAGGGGC...TGGTTCTGTCCTGGGACCATCATTTGATCTTAAGAGCATCAGCAAGATGTACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR CAA 90 bp TTGTACATCTTGCTGATGCTCTTAAGATCAAATGATGGTCCCAGGACAGAACCACTGACATTGAAGGCTTaGCTCTCCAACTGCAGAGCC +
Preference number: 5 (lower is better)
Translates to: LYILLMLLRSNDGPRTEPLTLKA*LSNCRA
Trigger: GGCTCTGCAGTTGGAGAGCAAAGCCTTCAATGTCAG...TGGTTCTGTCCTGGGACCATCATTTGATCTTAAGAGCATCAGCAAGATGTACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR CAA 90 bp TTGTACATCTTGCTGATGCTCTTAAGATCAAATGATGGTCCCAGGACAGAACCAACAGCCTGTGCAATGTaGGAGACCTCAGAGGTGAGA +
Preference number: 5 (lower is better)
Translates to: LYILLMLLRSNDGPRTEPTACAM*ETSEVR
Trigger: TCTCACCTCTGAGGTCTCCAACATTGCACAGGCTGT...TGGTTCTGTCCTGGGACCATCATTTGATCTTAAGAGCATCAGCAAGATGTACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR CAA 90 bp TCAGGACCTCTGGAAGAGCAATCAGTGCTCTTAACCACTGAGCCATCTCTTCAGCGTACGATTCTCGTTTaGGCATTAAGTACTCAGATT +
Preference number: 5 (lower is better)
Translates to: SGPLEEQSVLLTTEPSLQRTILV*ALSTQI
Trigger: AATCTGAGTACTTAATGCCAAAACGAGAATCGTACG...CTGAAGAGATGGCTCAGTGGTTAAGAGCACTGATTGCTCTTCCAGAGGTCCTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS GCA 90 bp GTTGGAGACCTCAGAGGTGAGACCAGCTTCATTGTATGCCTGGATTaGAATGTAGAGCTGGGTGTCATTTGCTATTTTAAAAGTTTCTGG +
Preference number: 5 (lower is better)
Translates to: VGDLRGETSFIVCLD*NVELGVICYFKSFW
Trigger: CCAGAAACTTTTAAAATAGCAAATGACACCCAGCTCTACATTGCAATCCAGGCATACAATGAAGCTGGTCTCACCTCTGAGGTCTCCAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS GCA 90 bp CTGTGCAATGTTGGAGACCTCAGAGGTGAGACCAGCTTCATTGTATaGCTGGATTGCAATGTAGAGCTGGGTGTCATTTGCTATTTTAAA +
Preference number: 5 (lower is better)
Translates to: LCNVGDLRGETSFIV*LDCNVELGVICYFK
Trigger: TTTAAAATAGCAAATGACACCCAGCTCTACATTGCAATCCAGGCATACAATGAAGCTGGTCTCACCTCTGAGGTCTCCAACATTGCACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR CAA 90 bp TTGTACATCTTGCTGATGCTCTTAAGATCAAATGATGGTCCCAGGACAGAACCAACTCGCCTTCTGGACTaGAGCAATGAAAATGTAGGT +
Preference number: 5 (lower is better)
Translates to: LYILLMLLRSNDGPRTEPTRLLD*SNENVG
Trigger: ACCTACATTTTCATTGCTCAAGTCCAGAAGGCGAGT...TGGTTCTGTCCTGGGACCATCATTTGATCTTAAGAGCATCAGCAAGATGTACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR CAA 90 bp TTGTACATCTTGCTGATGCTCTTAAGATCAAATGATGGTCCCAGGACAGAACCACAGGTAGGTAGAAGCTaGAGTTACCATTTCCTTTAT +
Preference number: 5 (lower is better)
Translates to: LYILLMLLRSNDGPRTEPQVGRS*SYHFLY
Trigger: ATAAAGGAAATGGTAACTCAAGCTTCTACCTACCTG...TGGTTCTGTCCTGGGACCATCATTTGATCTTAAGAGCATCAGCAAGATGTACAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR CAA 90 bp ACATTCTTGCTAGTCACTTTGTGTACTGATAAAACAACTTCAGCCAATGACAAAAACAGGCAAAAACCCTaGGCTGACCCGTACATACAC +
Preference number: 5 (lower is better)
Translates to: TFLLVTLCTDKTTSANDKNRQKP*ADPYIH
Trigger: GTGTATGTACGGGTCAGCCAAGGGTTTTTGCCTGTT...TTTGTCATTGGCTGAAGTTGTTTTATCAGTACACAAAGTGACTAGCAAGAATGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR CAA 90 bp ACATTCTTGCTAGTCACTTTGTGTACTGATAAAACAACTTCAGCCAATGACAAATTAAGTACTCAGATTTaGACTTCCAGGTCATCGGGA +
Preference number: 5 (lower is better)
Translates to: TFLLVTLCTDKTTSANDKLSTQI*TSRSSG
Trigger: TCCCGATGACCTGGAAGTCAAAATCTGAGTACTTAA...TTTGTCATTGGCTGAAGTTGTTTTATCAGTACACAAAGTGACTAGCAAGAATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR CAA 90 bp ACATTCTTGCTAGTCACTTTGTGTACTGATAAAACAACTTCAGCCAATGACAAAATTGTTAAAATCTTCTaGGAGACCCAGAGGATGCTG +
Preference number: 5 (lower is better)
Translates to: TFLLVTLCTDKTTSANDKIVKIF*ETQRML
Trigger: CAGCATCCTCTGGGTCTCCAAGAAGATTTTAACAAT...TTTGTCATTGGCTGAAGTTGTTTTATCAGTACACAAAGTGACTAGCAAGAATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR CAA 90 bp ACATTCTTGCTAGTCACTTTGTGTACTGATAAAACAACTTCAGCCAATGACAAATCTAGAGAAGTAAACTaGACAGCCTGTGCAATGTTG +
Preference number: 5 (lower is better)
Translates to: TFLLVTLCTDKTTSANDKSREVN*TACAML
Trigger: CAACATTGCACAGGCTGTCAAGTTTACTTCTCTAGA...TTTGTCATTGGCTGAAGTTGTTTTATCAGTACACAAAGTGACTAGCAAGAATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR CAA 90 bp ACATTCTTGCTAGTCACTTTGTGTACTGATAAAACAACTTCAGCCAATGACAAACCAGCTGTCTGTATTTaGTCTGGGATAAATGTACAT +
Preference number: 5 (lower is better)
Translates to: TFLLVTLCTDKTTSANDKPAVCI*SGINVH
Trigger: ATGTACATTTATCCCAGACAAAATACAGACAGCTGG...TTTGTCATTGGCTGAAGTTGTTTTATCAGTACACAAAGTGACTAGCAAGAATGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS-3UTR CAA 90 bp ACATTCTTGCTAGTCACTTTGTGTACTGATAAAACAACTTCAGCCAATGACAAAGGCCGTCCATGTAAGTaGAATATAATCACCTATAAA +
Preference number: 5 (lower is better)
Translates to: TFLLVTLCTDKTTSANDKGRPCK*NIITYK
Trigger: TTTATAGGTGATTATATTCAACTTACATGGACGGCC...TTTGTCATTGGCTGAAGTTGTTTTATCAGTACACAAAGTGACTAGCAAGAATGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS TCA 72 bp CTCGGGCAGCAGAAGGCCCCAGAGCGATGGTGTGGATaGTGGCACCGCTGCGAGAGACGGCCTCAAAGCAGG +
Preference number: 6 (lower is better)
Translates to: LGQQKAPERWCG*WHRCERRPQSR
Trigger: CCTGCTTTGAGGCCGTCTCTCGCAGCGGTGCCATCATCCACACCATCGCTCTGGGGCCTTCTGCTGCCCGAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS TCA 72 bp TCACGCCGGCACGCCCTTGTCACACAGCTGCCTCTCTaGCACTCGTGGACCACCTTCTTGCCTGTGATGCTG +
Preference number: 6 (lower is better)
Translates to: SRRHALVTQLPL*HSWTTFLPVML
Trigger: CAGCATCACAGGCAAGAAGGTGGTCCACGAGTGTCAGAGAGGCAGCTGTGTGACAAGGGCGTGCCGGCGTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS CAA 72 bp CATACAGCCGTGTCTTCGAGTCACGCCGGCACGCCCTaGTCACACAGCTGCCTCTCTGACACTCGTGGACCA +
Preference number: 6 (lower is better)
Translates to: HTAVSSSHAGTP*SHSCLSDTRGP
Trigger: TGGTCCACGAGTGTCAGAGAGGCAGCTGTGTGACAAGGGCGTGCCGGCGTGACTCGAAGACACGGCTGTATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS CAA 90 bp ATTTGGGTTCATACAGCCGTGTCTTCGAGTCACGCCGGCACGCCCTaGTCACACAGCTGCCTCTCTGACACTCGTGGACCACCTTCTTGC +
Preference number: 6 (lower is better)
Translates to: IWVHTAVSSSHAGTP*SHSCLSDTRGPPSC
Trigger: GCAAGAAGGTGGTCCACGAGTGTCAGAGAGGCAGCTGTGTGACAAGGGCGTGCCGGCGTGACTCGAAGACACGGCTGTATGAACCCAAAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS CCA 72 bp GGCTGTGCTCTGACTCATGTGAGCGGTAGCCAGGAGTaGTTCCATGGTGGGACTTCTTGCTCGAGTGGTCAC +
Preference number: 6 (lower is better)
Translates to: GCALTHVSGSQE*FHGGTSCSSGH
Trigger: GTGACCACTCGAGCAAGAAGTCCCACCATGGAACCACTCCTGGCTACCGCTCACATGAGTCAGAGCACAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000197013.2
CDS TCA 72 bp ATGGTCGCCATCAGGGGGCGCTCCAGACACAGTAAATaGCCCTCCAGAGGTTACTCTGTTGAAGTCCTCCAC +
Preference number: 6 (lower is better)
Translates to: MVAIRGRSRHSK*PSRGYSVEVLH
Trigger: GTGGAGGACTTCAACAGAGTAACCTCTGGAGGGTCATTTACTGTGTCTGGAGCGCCCCCTGATGGCGACCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000199029.2
CDS GCA 72 bp CCCAGAGGATGCTGGCTCACTCTGATGATGTATCTATaGGCTCTTCCCTTATCGAGAACCTTGCCAGGGGCC +
Preference number: 6 (lower is better)
Translates to: PRGCWLTLMMYL*ALPLSRTLPGA
Trigger: GGCCCCTGGCAAGGTTCTCGATAAGGGAAGAGCGCATAGATACATCATCAGAGTGAGCCAGCATCCTCTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS CAA 72 bp CTGTTTATCCATGCCCCTGCTCTGACATTGAAGGCTTaGCTCTCCAACTGCAGAGCCTGCTGGGAGACGCTG +
Preference number: 6 (lower is better)
Translates to: LFIHAPALTLKA*LSNCRACWETL
Trigger: CAGCGTCTCCCAGCAGGCTCTGCAGTTGGAGAGCAAAGCCTTCAATGTCAGAGCAGGGGCATGGATAAACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000197013.2
CDS CAA 90 bp GTCCCCACACTGTCCATACTGAAGGGTGTAGGGGTCGTCTCCATGTaGCAGGTGAGGATCCGCAACTATGACGTCTGCTTTGTCGTACGA +
Preference number: 6 (lower is better)
Translates to: VPTLSILKGVGVVSM*QVRIRNYDVCFVVR
Trigger: TCGTACGACAAAGCAGACGTCATAGTTGCGGATCCTCACCTGCAACATGGAGACGACCCCTACACCCTTCAGTATGGACAGTGTGGGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS CAA 90 bp CTGTCCACAGGTACTGTACTGTTTATCCATGCCCCTGCTCTGACATaGAAGGCTTTGCTCTCCAACTGCAGAGCCTGCTGGGAGACGCTG +
Preference number: 6 (lower is better)
Translates to: LSTGTVLFIHAPALT*KALLSNCRACWETL
Trigger: CAGCGTCTCCCAGCAGGCTCTGCAGTTGGAGAGCAAAGCCTTCAATGTCAGAGCAGGGGCATGGATAAACAGTACAGTACCTGTGGACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000197013.2
CDS TCA 72 bp GGAGGCGCTTCTGTTCCTCTCATGGGAGGGGAATTCTaGAAGTCAGCAGACGCCTTGATTACATCCCACGTG +
Preference number: 6 (lower is better)
Translates to: GGASVPLMGGEF*KSADALITSHV
Trigger: CACGTGGGATGTAATCAAGGCGTCTGCTGACTTTCAGAATTCCCCTCCCATGAGAGGAACAGAAGCGCCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS TCA 72 bp TTTGTTGGCATAGAAACGAAGCCCTCCTGTCATGTCTaGCAGAGTCTCCAGTTCTCGGGCAGCAGAAGGCCC +
Preference number: 6 (lower is better)
Translates to: FVGIETKPSCHV*QSLQFSGSRRP
Trigger: GGGCCTTCTGCTGCCCGAGAACTGGAGACTCTGTCAGACATGACAGGAGGGCTTCGTTTCTATGCCAACAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000197013.2
CDS GCA 72 bp GGTACCCGTGATGCTGTAAGTCCAAGTACCTGTCTCTaGAGTGCCCGGTATTTGAAGTCGAGCAGACCGGAT +
Preference number: 6 (lower is better)
Translates to: GTRDAVSPSTCL*SARYLKSSRPD
Trigger: ATCCGGTCTGCTCGACTTCAAATACCGGGCACTGCAGAGACAGGTACTTGGACTTACAGCATCACGGGTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000197013.2
CDS CCA 72 bp AGGTCTGTGACTTTACTTGGTGGGAACACACGAGCATaGTCGCCATCAGGGGGCGCTCCAGACACAGTAAAT +
Preference number: 6 (lower is better)
Translates to: RSVTLLGGNTRA*SPSGGAPDTVN
Trigger: ATTTACTGTGTCTGGAGCGCCCCCTGATGGCGACCATGCTCGTGTGTTCCCACCAAGTAAAGTCACAGACCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000199029.2
CDS CAA 90 bp GGTACTGTACTGTTTATCCATGCCCCTGCTCTGACATTGAAGGCTTaGCTCTCCAACTGCAGAGCCTGCTGGGAGACGCTGCCACTTGTA +
Preference number: 6 (lower is better)
Translates to: GTVLFIHAPALTLKA*LSNCRACWETLPLV
Trigger: TACAAGTGGCAGCGTCTCCCAGCAGGCTCTGCAGTTGGAGAGCAAAGCCTTCAATGTCAGAGCAGGGGCATGGATAAACAGTACAGTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000197013.2
CDS TCA 72 bp CACCAAGCACACCACTCGCCTTCTGGACTTGAGCAATaGAAATGTAGGTGGAGGAGGCGCTTCTGTTCCTCT +
Preference number: 6 (lower is better)
Translates to: HQAHHSPSGLEQ*KCRWRRRFCSS
Trigger: AGAGGAACAGAAGCGCCTCCTCCACCTACATTTTCATTGCTCAAGTCCAGAAGGCGAGTGGTGTGCTTGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS TCA 72 bp CTGCAGAGCCTGCTGGGAGACGCTGCCACTTGTAGATaGAATCCTACTGAAAGCGTCGATAAGGCTGCTTAC +
Preference number: 6 (lower is better)
Translates to: LQSLLGDAATCR*NPTESVDKAAY
Trigger: GTAAGCAGCCTTATCGACGCTTTCAGTAGGATTTCATCTACAAGTGGCAGCGTCTCCCAGCAGGCTCTGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000197013.2
CDS TCA 72 bp GCACCTGCCCCATTGTCCCATAGCTCCAGGGTGACTTaGTGTCCATGTTCAGCTTCTATGATGGCTGTGACA +
Preference number: 6 (lower is better)
Translates to: APAPLSHSSRVT*CPCSASMMAVT
Trigger: TGTCACAGCCATCATAGAAGCTGAACATGGACATCAAGTCACCCTGGAGCTATGGGACAATGGGGCAGGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000199029.2
CDS CCA 72 bp GCTGTGACATTGGCTCCTAGAACAGGCAAAAACCCTTaGCTGACCCGTACATACACAATCATCCGGCTAGGG +
Preference number: 6 (lower is better)
Translates to: AVTLAPRTGKNP*LTRTYTIIRLG
Trigger: CCCTAGCCGGATGATTGTGTATGTACGGGTCAGCCAAGGGTTTTTGCCTGTTCTAGGAGCCAATGTCACAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000197013.2
CDS CAA 72 bp CTGTCCATACTGAAGGGTGTAGGGGTCGTCTCCATGTaGCAGGTGAGGATCCGCAACTATGACGTCTGCTTT +
Preference number: 6 (lower is better)
Translates to: LSILKGVGVVSM*QVRIRNYDVCF
Trigger: AAAGCAGACGTCATAGTTGCGGATCCTCACCTGCAACATGGAGACGACCCCTACACCCTTCAGTATGGACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS CAA 72 bp GGTACTGTACTGTTTATCCATGCCCCTGCTCTGACATaGAAGGCTTTGCTCTCCAACTGCAGAGCCTGCTGG +
Preference number: 6 (lower is better)
Translates to: GTVLFIHAPALT*KALLSNCRACW
Trigger: CCAGCAGGCTCTGCAGTTGGAGAGCAAAGCCTTCAATGTCAGAGCAGGGGCATGGATAAACAGTACAGTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000197013.2
CDS CAA 90 bp TCTGGCACACTGGGGTTAATGGCAATGACCACACCCTCGTATCCATaGCTGTTGAGATGCACCATGGAGCTCTCTGTGTTCTGCAGGAGA +
Preference number: 6 (lower is better)
Translates to: SGTLGLMAMTTPSYP*LLRCTMELSVFCRR
Trigger: TCTCCTGCAGAACACAGAGAGCTCCATGGTGCATCTCAACAGCAATGGATACGAGGGTGTGGTCATTGCCATTAACCCCAGTGTGCCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS CAA 90 bp ATGGAGGCCCCAGCTGTCTGTATTTTGTCTGGGATAAATGTACATTaGGGTTCATACAGCCGTGTCTTCGAGTCACGCCGGCACGCCCTT +
Preference number: 6 (lower is better)
Translates to: MEAPAVCILSGINVH*GSYSRVFESRRHAL
Trigger: AAGGGCGTGCCGGCGTGACTCGAAGACACGGCTGTATGAACCCAAATGTACATTTATCCCAGACAAAATACAGACAGCTGGGGCCTCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS TCA 72 bp AATTGCCTGAAATCCTGCCTGGAGTCCATGGCAAATTaGAGTTCCACCAGTAGCCTGTTGGGGGAGGTTTGC +
Preference number: 6 (lower is better)
Translates to: NCLKSCLESMAN*SSTSSLLGEVC
Trigger: GCAAACCTCCCCCAACAGGCTACTGGTGGAACTTCAATTTGCCATGGACTCCAGGCAGGATTTCAGGCAATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS GCA 72 bp CTGACATTGAAGGCTTTGCTCTCCAACTGCAGAGCCTaGTGGGAGACGCTGCCACTTGTAGATGAAATCCTA +
Preference number: 6 (lower is better)
Translates to: LTLKALLSNCRA*WETLPLVDEIL
Trigger: TAGGATTTCATCTACAAGTGGCAGCGTCTCCCAGCAGGCTCTGCAGTTGGAGAGCAAAGCCTTCAATGTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000197013.2
CDS GCA 72 bp AGCGGTAGCCAGGAGTGGTTCCATGGTGGGACTTCTTaGTCGAGTGGTCACTGTCATTGTAATCAACTGAGA +
Preference number: 6 (lower is better)
Translates to: SGSQEWFHGGTS*SSGHCHCNQLR
Trigger: TCTCAGTTGATTACAATGACAGTGACCACTCGAGCAAGAAGTCCCACCATGGAACCACTCCTGGCTACCGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000197013.2
CDS CCA 72 bp CATTTCCTTTATGCTTGGGATGAGCCTTTCGTCCTCTaGCACACTGGGGTTAATGGCAATGACCACACCCTC +
Preference number: 6 (lower is better)
Translates to: HFLYAWDEPFVL*HTGVNGNDHTL
Trigger: GAGGGTGTGGTCATTGCCATTAACCCCAGTGTGCCAGAGGACGAAAGGCTCATCCCAAGCATAAAGGAAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS CCA 72 bp ACATTGAAGGCTTTGCTCTCCAACTGCAGAGCCTGCTaGGAGACGCTGCCACTTGTAGATGAAATCCTACTG +
Preference number: 6 (lower is better)
Translates to: TLKALLSNCRAC*ETLPLVDEILL
Trigger: CAGTAGGATTTCATCTACAAGTGGCAGCGTCTCCCAGCAGGCTCTGCAGTTGGAGAGCAAAGCCTTCAATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000197013.2
CDS CAA 72 bp CTGGGGTTAATGGCAATGACCACACCCTCGTATCCATaGCTGTTGAGATGCACCATGGAGCTCTCTGTGTTC +
Preference number: 6 (lower is better)
Translates to: LGLMAMTTPSYP*LLRCTMELSVF
Trigger: GAACACAGAGAGCTCCATGGTGCATCTCAACAGCAATGGATACGAGGGTGTGGTCATTGCCATTAACCCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS TCA 72 bp GAACCGGAAGTGCTCTGGTCACTGGAGGTAATTGCCTaGAATCCTGCCTGGAGTCCATGGCAAATTGAAGTT +
Preference number: 6 (lower is better)
Translates to: EPEVLWSLEVIA*NPAWSPWQIEV
Trigger: AACTTCAATTTGCCATGGACTCCAGGCAGGATTTCAGGCAATTACCTCCAGTGACCAGAGCACTTCCGGTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS TCA 72 bp TTACCTGCCCCATTGTCCCATAGCTCCAGGGTGACTTaGTGTCCATGTTCAGCTTCTATGATGGCTGTGACA +
Preference number: 6 (lower is better)
Translates to: LPAPLSHSSRVT*CPCSASMMAVT
Trigger: TGTCACAGCCATCATAGAAGCTGAACATGGACATCAAGTCACCCTGGAGCTATGGGACAATGGGGCAGGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197013.2
CDS GCA 72 bp GACGGTACTGTCCACAGGTACTGTACTGTTTATCCATaGCCCTGCTCTGACATTGAAGGCTTTGCTCTCCAA +
Preference number: 6 (lower is better)
Translates to: DGTVHRYCTVYP*PCSDIEGFALQ
Trigger: TTGGAGAGCAAAGCCTTCAATGTCAGAGCAGGGGCATGGATAAACAGTACAGTACCTGTGGACAGTACCGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000197013.2
CDS GCA 72 bp GTTGGAGACCTCAGAGGTGAGACCAGCTTCATTGTATaGCTGGATTGCAATGTAGAGCTGGGTGTCATTTGC +
Preference number: 6 (lower is better)
Translates to: VGDLRGETSFIV*LDCNVELGVIC
Trigger: GCAAATGACACCCAGCTCTACATTGCAATCCAGGCATACAATGAAGCTGGTCTCACCTCTGAGGTCTCCAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS CCA 72 bp GTAGGTAGAAGCTTGAGTTACCATTTCCTTTATGCTTaGGATGAGCCTTTCGTCCTCTGGCACACTGGGGTT +
Preference number: 6 (lower is better)
Translates to: VGRSLSYHFLYA*DEPFVLWHTGV
Trigger: AACCCCAGTGTGCCAGAGGACGAAAGGCTCATCCCAAGCATAAAGGAAATGGTAACTCAAGCTTCTACCTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS CCA 72 bp CTCCACTGTAGCTTCTATGGCTTCTTCTTGGACATCTaGTCTGGGTGGATTCAGTACAATTTTACCTGCCCC +
Preference number: 6 (lower is better)
Translates to: LHCSFYGFFLDI*SGWIQYNFTCP
Trigger: GGGGCAGGTAAAATTGTACTGAATCCACCCAGACCAGATGTCCAAGAAGAAGCCATAGAAGCTACAGTGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197013.2
CDS CAA 72 bp CCAGCTGTCTGTATTTTGTCTGGGATAAATGTACATTaGGGTTCATACAGCCGTGTCTTCGAGTCACGCCGG +
Preference number: 6 (lower is better)
Translates to: PAVCILSGINVH*GSYSRVFESRR
Trigger: CCGGCGTGACTCGAAGACACGGCTGTATGAACCCAAATGTACATTTATCCCAGACAAAATACAGACAGCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS CAA 90 bp ATATCAGCACCCAGTGCAGAGATACTATCTTCTAGAGAAGTAAACTaGACAGCCTGTGCAATGTTGGAGACCTCAGAGGTGAGACCAGCT +
Preference number: 6 (lower is better)
Translates to: ISAPSAEILSSREVN*TACAMLETSEVRPA
Trigger: AGCTGGTCTCACCTCTGAGGTCTCCAACATTGCACAGGCTGTCAAGTTTACTTCTCTAGAAGATAGTATCTCTGCACTGGGTGCTGATAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS CCA 72 bp AGCTTCTATGGCTTCTTCTTGGACATCTGGTCTGGGTaGATTCAGTACAATTTTACCTGCCCCATTGTCCCA +
Preference number: 6 (lower is better)
Translates to: SFYGFFLDIWSG*IQYNFTCPIVP
Trigger: TGGGACAATGGGGCAGGTAAAATTGTACTGAATCCACCCAGACCAGATGTCCAAGAAGAAGCCATAGAAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197013.2
CDS CAA 72 bp CTTATCGAGAACCTTGCCAGGGGCCGTCCATGTAAGTaGAATATAATCACCTATAAACTCAGCCTCCAGGTC +
Preference number: 6 (lower is better)
Translates to: LIENLARGRPCK*NIITYKLSLQV
Trigger: GACCTGGAGGCTGAGTTTATAGGTGATTATATTCAACTTACATGGACGGCCCCTGGCAAGGTTCTCGATAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000199029.2
CDS CAA 72 bp CCCAGTGCAGAGATACTATCTTCTAGAGAAGTAAACTaGACAGCCTGTGCAATGTTGGAGACCTCAGAGGTG +
Preference number: 6 (lower is better)
Translates to: PSAEILSSREVN*TACAMLETSEV
Trigger: CACCTCTGAGGTCTCCAACATTGCACAGGCTGTCAAGTTTACTTCTCTAGAAGATAGTATCTCTGCACTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS GCA 72 bp GTAGCATTGTTAAAATCTTCTTGGAGACCCAGAGGATaGTGGCTCACTCTGATGATGTATCTATGCGCTCTT +
Preference number: 6 (lower is better)
Translates to: VALLKSSWRPRG*WLTLMMYLCAL
Trigger: AAGAGCGCATAGATACATCATCAGAGTGAGCCAGCATCCTCTGGGTCTCCAAGAAGATTTTAACAATGCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS GCA 72 bp CTCAGAGGTGAGACCAGCTTCATTGTATGCCTGGATTaGAATGTAGAGCTGGGTGTCATTTGCTATTTTAAA +
Preference number: 6 (lower is better)
Translates to: LRGETSFIVCLD*NVELGVICYFK
Trigger: TTTAAAATAGCAAATGACACCCAGCTCTACATTGCAATCCAGGCATACAATGAAGCTGGTCTCACCTCTGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029929.12
CDS CCA 72 bp CTCCACTGTAGCTTCTATGGCTTCTTCTTGGACATCTaGTCTGGGTGGATTCAGTACAATTTTACCATTTTC +
Preference number: 6 (lower is better)
Translates to: LHCSFYGFFLDI*SGWIQYNFTIF
Trigger: GAAAATGGTAAAATTGTACTGAATCCACCCAGACCAGATGTCCAAGAAGAAGCCATAGAAGCTACAGTGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029929.12
ENSMUST00000199029.2
CDS CCA 72 bp TTGAAGTCCTCCACTGTAGCTTCTATGGCTTCTTCTTaGACATCTGGTCTGGGTGGATTCAGTACAATTTTA +
Preference number: 6 (lower is better)
Translates to: LKSSTVASMASS*TSGLGGFSTIL
Trigger: TAAAATTGTACTGAATCCACCCAGACCAGATGTCCAAGAAGAAGCCATAGAAGCTACAGTGGAGGACTTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029929.12
ENSMUST00000197013.2
ENSMUST00000199029.2