Pregenerated sensors for CLBA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037594Ensembl transcript IDs: ENSMUST00000037014.11, ENSMUST00000177808.3
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTACCTGGTACCAGCCTACAGTGTCCCCAGAAACTCCATGGAGACTaGCTCTGCCCCTTATCATCGGTGCTCCCTATCAGACCTGAGCAC | + |
|
Preference number: 1 (lower is better) Translates to: VPGTSLQCPQKLHGD*LCPLSSVLPIRPEH Trigger: GTGCTCAGGTCTGATAGGGAGCACCGATGATAAGGGGCAGAGCCAGTCTCCATGGAGTTTCTGGGGACACTGTAGGCTGGTACCAGGTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| 3UTR CCA 90 bp | TCAACAGGTACCTGGTACCAGCCTACAGTGTCCCCAGAAACTCCATaGAGACTGGCTCTGCCCCTTATCATCGGTGCTCCCTATCAGACC | + |
|
Preference number: 1 (lower is better) Translates to: STGTWYQPTVSPETP*RLALPLIIGAPYQT Trigger: GGTCTGATAGGGAGCACCGATGATAAGGGGCAGAGCCAGTCTCCATGGAGTTTCTGGGGACACTGTAGGCTGGTACCAGGTACCTGTTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| 3UTR-3UTR CCA 90 bp | GGGACACCCAGTGTGTCCTCCCACCCTCCCACTCAGAGGGAAGCTTGTCCCCGAAAACTAACATGGAACTaGGAAACAGTGCCACAGAAT | + |
|
Preference number: 2 (lower is better) Translates to: GTPSVSSHPPTQREACPRKLTWN*ETVPQN Trigger: ATTCTGTGGCACTGTTTCCCAGTTCCATGTTAGTTT...TCGGGGACAAGCTTCCCTCTGAGTGGGAGGGTGGGAGGACACACTGGGTGTCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| 3UTR-3UTR GCA 90 bp | GCCTACAGTGTCCCCAGAAACTCCATGGAGACTGGCTCTGCCCCTTATCATCGGGGAACTGGGAAACAGTaGCACAGAATTCTCAAGTTC | + |
|
Preference number: 2 (lower is better) Translates to: AYSVPRNSMETGSAPYHRGTGKQ*HRILKF Trigger: GAACTTGAGAATTCTGTGGCACTGTTTCCCAGTTCC...CCGATGATAAGGGGCAGAGCCAGTCTCCATGGAGTTTCTGGGGACACTGTAGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| 3UTR CCA 72 bp | ACCTGGTACCAGCCTACAGTGTCCCCAGAAACTCCATaGAGACTGGCTCTGCCCCTTATCATCGGTGCTCCC | + |
|
Preference number: 3 (lower is better) Translates to: TWYQPTVSPETP*RLALPLIIGAP Trigger: GGGAGCACCGATGATAAGGGGCAGAGCCAGTCTCCATGGAGTTTCTGGGGACACTGTAGGCTGGTACCAGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| 3UTR GCA 72 bp | CTACAGTGTCCCCAGAAACTCCATGGAGACTGGCTCTaGCCCTTATCATCGGTGCTCCCTATCAGACCTGAG | + |
|
Preference number: 3 (lower is better) Translates to: LQCPQKLHGDWL*PLSSVLPIRPE Trigger: CTCAGGTCTGATAGGGAGCACCGATGATAAGGGGCAGAGCCAGTCTCCATGGAGTTTCTGGGGACACTGTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| 3UTR CCA 72 bp | ACCAGCCTACAGTGTCCCCAGAAACTCCATGGAGACTaGCTCTGCCCCTTATCATCGGTGCTCCCTATCAGA | + |
|
Preference number: 3 (lower is better) Translates to: TSLQCPQKLHGD*LCPLSSVLPIR Trigger: TCTGATAGGGAGCACCGATGATAAGGGGCAGAGCCAGTCTCCATGGAGTTTCTGGGGACACTGTAGGCTGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| 3UTR TCA 72 bp | GTTCCTGCAAGTGATCAGCAGCTATCTTCTGACTTCTaGACTCATGGATCCAACTGTGAGCCACGCAGGGGT | + |
|
Preference number: 3 (lower is better) Translates to: VPASDQQLSSDF*THGSNCEPRRG Trigger: ACCCCTGCGTGGCTCACAGTTGGATCCATGAGTTCAGAAGTCAGAAGATAGCTGCTGATCACTTGCAGGAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| 3UTR CCA 72 bp | TTACAAAATGCAGCACTGCCTGCTTGTGTATGCCTCTaGAGTAAAACCCTTGTCTCAGCAGATGACCAAGGG | + |
|
Preference number: 3 (lower is better) Translates to: LQNAALPACVCL*SKTLVSADDQG Trigger: CCCTTGGTCATCTGCTGAGACAAGGGTTTTACTCCAGAGGCATACACAAGCAGGCAGTGCTGCATTTTGTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| CDS-3UTR TCA 90 bp | AGTGTCCCCAGAAACTCCATGGAGACTGGCTCTGCCCCTTATCATCGGTGCTCCCTCCCCACCCGCCGCTaGGCTCCCCCGGGTGTGGAC | + |
|
Preference number: 4 (lower is better) Translates to: SVPRNSMETGSAPYHRCSLPTRR*APPGVD Trigger: GTCCACACCCGGGGGAGCTCAGCGGCGGGTGGGGAG...GGAGCACCGATGATAAGGGGCAGAGCCAGTCTCCATGGAGTTTCTGGGGACACT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| CDS-3UTR GCA 90 bp | TGTGTCCTCCCACCCTCCCACTCAGAGGGAAGCTTGTCCCCGAGGCTGCTGGGTTCAGGCTGCCCTGTCTaGTACTGGACGTCCCTGAGA | + |
|
Preference number: 4 (lower is better) Translates to: CVLPPSHSEGSLSPRLLGSGCPV*YWTSLR Trigger: TCTCAGGGACGTCCAGTAGCAGACAGGGCAGCCTGA...ACCCAGCAGCCTCGGGGACAAGCTTCCCTCTGAGTGGGAGGGTGGGAGGACACA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| 3UTR CAA 72 bp | CAGTGTGTCCTCCCACCCTCCCACTCAGAGGGAAGCTaGTCCCCGAGGCTGCTGGGTGAGGATCCAACACAG | + |
|
Preference number: 4 (lower is better) Translates to: QCVLPPSHSEGS*SPRLLGEDPTQ Trigger: CTGTGTTGGATCCTCACCCAGCAGCCTCGGGGACAAGCTTCCCTCTGAGTGGGAGGGTGGGAGGACACACTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| CDS-3UTR GCA 90 bp | GGGACACCCAGTGTGTCCTCCCACCCTCCCACTCAGAGGGAAGCTTGTCCCCGAAGGGCTTTGCAGTGGTaGAGGTGGAAACCGCTGACA | + |
|
Preference number: 4 (lower is better) Translates to: GTPSVSSHPPTQREACPRRALQW*RWKPLT Trigger: TGTCAGCGGTTTCCACCTGCACCACTGCAAAGCCCT...TCGGGGACAAGCTTCCCTCTGAGTGGGAGGGTGGGAGGACACACTGGGTGTCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| CDS-3UTR CCA 90 bp | GCAGATGACCAAGGGACACCCAGTGTGTCCTCCCACCCTCCCACTCAGAGGGAACCGGGTGTGGACAGCTaGTGGGAAGACCCTCATCCA | + |
|
Preference number: 4 (lower is better) Translates to: ADDQGTPSVSSHPPTQREPGVDS*WEDPHP Trigger: TGGATGAGGGTCTTCCCACCAGCTGTCCACACCCGG...TTCCCTCTGAGTGGGAGGGTGGGAGGACACACTGGGTGTCCCTTGGTCATCTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| CDS-3UTR CCA 90 bp | ACACAGAGAAAGATAGGTATAACACCCCAGGAAACAGCACGGGGGAGGGCCAGGCCTCTAGCTGTCTGGTaGGGGGACCCCTCTCCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: TQRKIGITPQETARGRARPLAVW*GDPSPG Trigger: GCCTGGAGAGGGGTCCCCCCACCAGACAGCTAGAGG...CCTGGCCCTCCCCCGTGCTGTTTCCTGGGGTGTTATACCTATCTTTCTCTGTGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| CDS-3UTR CCA 90 bp | AAGGGACACCCAGTGTGTCCTCCCACCCTCCCACTCAGAGGGAAGCTTGTCCCCATCAGGGCTTTGCAGTaGTGCAGGTGGAAACCGCTG | + |
|
Preference number: 4 (lower is better) Translates to: KGHPVCPPTLPLRGKLVPIRALQ*CRWKPL Trigger: CAGCGGTTTCCACCTGCACCACTGCAAAGCCCTGAT...GGGGACAAGCTTCCCTCTGAGTGGGAGGGTGGGAGGACACACTGGGTGTCCCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| CDS-3UTR TCA 90 bp | CAGTGTCCCCAGAAACTCCATGGAGACTGGCTCTGCCCCTTATCATCGGTGCTCGCTGGGAATGGACTCTaGAGATGGGCCAGCAGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: QCPQKLHGDWLCPLSSVLAGNGL*RWASSS Trigger: ACTGCTGCTGGCCCATCTTCAGAGTCCATTCCCAGC...GAGCACCGATGATAAGGGGCAGAGCCAGTCTCCATGGAGTTTCTGGGGACACTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| CDS-3UTR CCA 90 bp | ACACAGAGAAAGATAGGTATAACACCCCAGGAAACAGCACGGGGGAGGGCCAGGGGTGTGGACAGCTGGTaGGAAGACCCTCATCCAGCC | + |
|
Preference number: 4 (lower is better) Translates to: TQRKIGITPQETARGRARGVDSW*EDPHPA Trigger: GGCTGGATGAGGGTCTTCCCACCAGCTGTCCACACC...CCTGGCCCTCCCCCGTGCTGTTTCCTGGGGTGTTATACCTATCTTTCTCTGTGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| CDS-3UTR CCA 90 bp | TCTGCCCCTTATCATCGGTGCTCCCTATCAGACCTGAGCACGTGTTATACGGTAGAGCTCCCCCGGGTGTaGACAGCTGGTGGGAAGACC | + |
|
Preference number: 4 (lower is better) Translates to: SAPYHRCSLSDLSTCYTVELPRV*TAGGKT Trigger: GGTCTTCCCACCAGCTGTCCACACCCGGGGGAGCTC...TACCGTATAACACGTGCTCAGGTCTGATAGGGAGCACCGATGATAAGGGGCAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| CDS-3UTR CCA 90 bp | ACAGAGAAAGATAGGTATAACACCCCAGGAAACAGCACGGGGGAGGGCCAGGTCCCACCCTGCTGCACCTaGCAAGAACTGCCCTCTTCG | + |
|
Preference number: 4 (lower is better) Translates to: TEKDRYNTPGNSTGEGQVPPCCT*QELPSS Trigger: CGAAGAGGGCAGTTCTTGCCAGGTGCAGCAGGGTGG...GACCTGGCCCTCCCCCGTGCTGTTTCCTGGGGTGTTATACCTATCTTTCTCTGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| CDS-3UTR CCA 90 bp | AAGGGACACCCAGTGTGTCCTCCCACCCTCCCACTCAGAGGGAAGCTTGTCCCCTCTCATAGCTGGGAATaGACTCTGAAGATGGGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: KGHPVCPPTLPLRGKLVPSHSWE*TLKMGQ Trigger: CTGGCCCATCTTCAGAGTCCATTCCCAGCTATGAGA...GGGGACAAGCTTCCCTCTGAGTGGGAGGGTGGGAGGACACACTGGGTGTCCCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| CDS-3UTR GCA 90 bp | ACACAGAGAAAGATAGGTATAACACCCCAGGAAACAGCACGGGGGAGGGCCAGGGCACCTGGCAAGAACTaGCCTCTTCGGGGACTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: TQRKIGITPQETARGRARAPGKN*PLRGLK Trigger: CTTCAGTCCCCGAAGAGGGCAGTTCTTGCCAGGTGC...CCTGGCCCTCCCCCGTGCTGTTTCCTGGGGTGTTATACCTATCTTTCTCTGTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| CDS-3UTR CCA 90 bp | GACACCCAGTGTGTCCTCCCACCCTCCCACTCAGAGGGAAGCTTGTCCCCGAGGCTTCTTTCCAAGAAATaGTCCAGGGAGCAAACGTCT | + |
|
Preference number: 4 (lower is better) Translates to: DTQCVLPPSHSEGSLSPRLLSKK*SREQTS Trigger: AGACGTTTGCTCCCTGGACCATTTCTTGGAAAGAAG...CCTCGGGGACAAGCTTCCCTCTGAGTGGGAGGGTGGGAGGACACACTGGGTGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| CDS-3UTR TCA 90 bp | AGCAGCTATCTTCTGACTTCTGAACTCATGGATCCAACTGTGAGCCACGCAGGGTGCGAGGTCACTCACTaGCTCTCTCCCCACCTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: SSYLLTSELMDPTVSHAGCEVTH*LSPHLL Trigger: CAGGAGGTGGGGAGAGAGTCAGTGAGTGACCTCGCA...CCCTGCGTGGCTCACAGTTGGATCCATGAGTTCAGAAGTCAGAAGATAGCTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| CDS-3UTR GCA 90 bp | TGGCTCTGCCCCTTATCATCGGTGCTCCCTATCAGACCTGAGCACGTGTTATACGCAGTGTCGGTGTTCTaGAGGGCTCTCCAGAGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: WLCPLSSVLPIRPEHVLYAVSVF*RALQSF Trigger: GAAGCTCTGGAGAGCCCTGCAGAACACCGACACTGC...GTATAACACGTGCTCAGGTCTGATAGGGAGCACCGATGATAAGGGGCAGAGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| CDS-3UTR CCA 90 bp | GCAGATGACCAAGGGACACCCAGTGTGTCCTCCCACCCTCCCACTCAGAGGGAAAAACCTTCTCATAGCTaGGAATGGACTCTGAAGATG | + |
|
Preference number: 4 (lower is better) Translates to: ADDQGTPSVSSHPPTQREKPSHS*EWTLKM Trigger: CATCTTCAGAGTCCATTCCCAGCTATGAGAAGGTTT...TTCCCTCTGAGTGGGAGGGTGGGAGGACACACTGGGTGTCCCTTGGTCATCTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| 3UTR CAA 72 bp | CACTGCCTGCTTGTGTATGCCTCTGGAGTAAAACCCTaGTCTCAGCAGATGACCAAGGGACACCCAGTGTGT | + |
|
Preference number: 4 (lower is better) Translates to: HCLLVYASGVKP*SQQMTKGHPVC Trigger: ACACACTGGGTGTCCCTTGGTCATCTGCTGAGACAAGGGTTTTACTCCAGAGGCATACACAAGCAGGCAGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| CDS-3UTR GCA 90 bp | TGTGTCCTCCCACCCTCCCACTCAGAGGGAAGCTTGTCCCCGAGGCTGCTGGGTATCATTATTAAAGAATaGCATTTTCAGGTTGCGTGG | + |
|
Preference number: 4 (lower is better) Translates to: CVLPPSHSEGSLSPRLLGIIIKE*HFQVAW Trigger: CCACGCAACCTGAAAATGGCATTCTTTAATAATGAT...ACCCAGCAGCCTCGGGGACAAGCTTCCCTCTGAGTGGGAGGGTGGGAGGACACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| CDS-3UTR GCA 90 bp | AGTGTCCCCAGAAACTCCATGGAGACTGGCTCTGCCCCTTATCATCGGTGCTCCATGCAGCCCCTTCATTaGTTCTTTCCAAGAAATGGT | + |
|
Preference number: 4 (lower is better) Translates to: SVPRNSMETGSAPYHRCSMQPLH*FFPRNG Trigger: ACCATTTCTTGGAAAGAAGCAATGAAGGGGCTGCAT...GGAGCACCGATGATAAGGGGCAGAGCCAGTCTCCATGGAGTTTCTGGGGACACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| CDS CCA 90 bp | GAAGCCTTCGAACTCTCCCCACCCGCCGCTGAGCTCCCCCGGGTGTaGACAGCTGGTGGGAAGACCCTCATCCAGCCTGGAGCTGTTAGC | + |
|
Preference number: 5 (lower is better) Translates to: EAFELSPPAAELPRV*TAGGKTLIQPGAVS Trigger: GCTAACAGCTCCAGGCTGGATGAGGGTCTTCCCACCAGCTGTCCACACCCGGGGGAGCTCAGCGGCGGGTGGGGAGAGTTCGAAGGCTTC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000037014.11 ENSMUST00000177808.3 |
||
| CDS CCA 90 bp | GGGCCAGCAGCAGTTCCTGTCACCCAGGGTCCACCCTGCTGCACCTaGCAAGAACTGCCCTCTTCGGGGACTGAAGGGGTTCTCAGCGGC | + |
|
Preference number: 5 (lower is better) Translates to: GPAAVPVTQGPPCCT*QELPSSGTEGVLSG Trigger: GCCGCTGAGAACCCCTTCAGTCCCCGAAGAGGGCAGTTCTTGCCAGGTGCAGCAGGGTGGACCCTGGGTGACAGGAACTGCTGCTGGCCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037014.11 ENSMUST00000177808.3 |
||
| CDS GCA 90 bp | CAGTTCCTGTCACCCAGGGTCCACCCTGCTGCACCTGGCAAGAACTaGCCTCTTCGGGGACTGAAGGGGTTCTCAGCGGCTGACATTCCG | + |
|
Preference number: 5 (lower is better) Translates to: QFLSPRVHPAAPGKN*PLRGLKGFSAADIP Trigger: CGGAATGTCAGCCGCTGAGAACCCCTTCAGTCCCCGAAGAGGGCAGTTCTTGCCAGGTGCAGCAGGGTGGACCCTGGGTGACAGGAACTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037014.11 ENSMUST00000177808.3 |
||
| CDS GCA 90 bp | GAAGATGGGCCAGCAGCAGTTCCTGTCACCCAGGGTCCACCCTGCTaGACCTGGCAAGAACTGCCCTCTTCGGGGACTGAAGGGGTTCTC | + |
|
Preference number: 5 (lower is better) Translates to: EDGPAAVPVTQGPPC*TWQELPSSGTEGVL Trigger: GAGAACCCCTTCAGTCCCCGAAGAGGGCAGTTCTTGCCAGGTGCAGCAGGGTGGACCCTGGGTGACAGGAACTGCTGCTGGCCCATCTTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037014.11 ENSMUST00000177808.3 |
||
| CDS GCA 90 bp | TCTGAAGATGGGCCAGCAGCAGTTCCTGTCACCCAGGGTCCACCCTaGTGCACCTGGCAAGAACTGCCCTCTTCGGGGACTGAAGGGGTT | + |
|
Preference number: 5 (lower is better) Translates to: SEDGPAAVPVTQGPP*CTWQELPSSGTEGV Trigger: AACCCCTTCAGTCCCCGAAGAGGGCAGTTCTTGCCAGGTGCAGCAGGGTGGACCCTGGGTGACAGGAACTGCTGCTGGCCCATCTTCAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037014.11 ENSMUST00000177808.3 |
||
| CDS TCA 90 bp | ATCAGGCTGCCCTGTCTGCTACTGGACGTCCCTGAGAGCTTGGTCTaGATCAGGGCTTTGCAGTGGTGCAGGTGGAAACCGCTGACAGCC | + |
|
Preference number: 5 (lower is better) Translates to: IRLPCLLLDVPESLV*IRALQWCRWKPLTA Trigger: GGCTGTCAGCGGTTTCCACCTGCACCACTGCAAAGCCCTGATTCAGACCAAGCTCTCAGGGACGTCCAGTAGCAGACAGGGCAGCCTGAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037014.11 ENSMUST00000177808.3 |
||
| CDS GCA 90 bp | GATTCGCCCCAGAGACACCTCGAAGCAGACGCAGTGTCGGTGTTCTaGAGGGCTCTCCAGAGCTTCCTAGATTCAGAACAGAGTCTCGGC | + |
|
Preference number: 5 (lower is better) Translates to: DSPQRHLEADAVSVF*RALQSFLDSEQSLG Trigger: GCCGAGACTCTGTTCTGAATCTAGGAAGCTCTGGAGAGCCCTGCAGAACACCGACACTGCGTCTGCTTCGAGGTGTCTCTGGGGCGAATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037014.11 ENSMUST00000177808.3 |
||
| CDS-3UTR CAA 90 bp | GACACCCAGTGTGTCCTCCCACCCTCCCACTCAGAGGGAAGCTTGTCCCCGAGGAATGCCATTTTCAGGTaGCGTGGAGTAAAGATCTTT | + |
|
Preference number: 5 (lower is better) Translates to: DTQCVLPPSHSEGSLSPRNAIFR*RGVKIF Trigger: AAAGATCTTTACTCCACGCAACCTGAAAATGGCATT...CCTCGGGGACAAGCTTCCCTCTGAGTGGGAGGGTGGGAGGACACACTGGGTGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| CDS GCA 90 bp | GGCTCTCCAGAGCTTCCTAGATTCAGAACAGAGTCTCGGCACAGATaGAGCCCCTTCATTGCTTCTTTCCAAGAAATGGTCCAGGGAGCA | + |
|
Preference number: 5 (lower is better) Translates to: GSPELPRFRTESRHR*SPFIASFQEMVQGA Trigger: TGCTCCCTGGACCATTTCTTGGAAAGAAGCAATGAAGGGGCTGCATCTGTGCCGAGACTCTGTTCTGAATCTAGGAAGCTCTGGAGAGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037014.11 ENSMUST00000177808.3 |
||
| CDS-3UTR CAA 90 bp | AACATGGAACTGGGAAACAGTGCCACAGAATTCTCAAGTTCTAGTACCAAAGCAGATGCAGCCCCTTCATaGCTTCTTTCCAAGAAATGG | + |
|
Preference number: 5 (lower is better) Translates to: NMELGNSATEFSSSSTKADAAPS*LLSKKW Trigger: CCATTTCTTGGAAAGAAGCAATGAAGGGGCTGCATC...TGCTTTGGTACTAGAACTTGAGAATTCTGTGGCACTGTTTCCCAGTTCCATGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037014.11 |
||
| CDS TCA 72 bp | ACTCCCGGAAGCCTTCGAACTCTCCCCACCCGCCGCTaGGCTCCCCCGGGTGTGGACAGCTGGTGGGAAGAC | + |
|
Preference number: 6 (lower is better) Translates to: TPGSLRTLPTRR*APPGVDSWWED Trigger: GTCTTCCCACCAGCTGTCCACACCCGGGGGAGCTCAGCGGCGGGTGGGGAGAGTTCGAAGGCTTCCGGGAGT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000037014.11 ENSMUST00000177808.3 |
||
| CDS CCA 72 bp | GAACTCTCCCCACCCGCCGCTGAGCTCCCCCGGGTGTaGACAGCTGGTGGGAAGACCCTCATCCAGCCTGGA | + |
|
Preference number: 6 (lower is better) Translates to: ELSPPAAELPRV*TAGGKTLIQPG Trigger: TCCAGGCTGGATGAGGGTCTTCCCACCAGCTGTCCACACCCGGGGGAGCTCAGCGGCGGGTGGGGAGAGTTC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000037014.11 ENSMUST00000177808.3 |
||
| CDS GCA 72 bp | GGGCCAGCAGCAGTTCCTGTCACCCAGGGTCCACCCTaGTGCACCTGGCAAGAACTGCCCTCTTCGGGGACT | + |
|
Preference number: 6 (lower is better) Translates to: GPAAVPVTQGPP*CTWQELPSSGT Trigger: AGTCCCCGAAGAGGGCAGTTCTTGCCAGGTGCAGCAGGGTGGACCCTGGGTGACAGGAACTGCTGCTGGCCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037014.11 ENSMUST00000177808.3 |
||
| CDS GCA 72 bp | CCAGCAGCAGTTCCTGTCACCCAGGGTCCACCCTGCTaGACCTGGCAAGAACTGCCCTCTTCGGGGACTGAA | + |
|
Preference number: 6 (lower is better) Translates to: PAAVPVTQGPPC*TWQELPSSGTE Trigger: TTCAGTCCCCGAAGAGGGCAGTTCTTGCCAGGTGCAGCAGGGTGGACCCTGGGTGACAGGAACTGCTGCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037014.11 ENSMUST00000177808.3 |
||
| CDS CCA 72 bp | GCAGTTCCTGTCACCCAGGGTCCACCCTGCTGCACCTaGCAAGAACTGCCCTCTTCGGGGACTGAAGGGGTT | + |
|
Preference number: 6 (lower is better) Translates to: AVPVTQGPPCCT*QELPSSGTEGV Trigger: AACCCCTTCAGTCCCCGAAGAGGGCAGTTCTTGCCAGGTGCAGCAGGGTGGACCCTGGGTGACAGGAACTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037014.11 ENSMUST00000177808.3 |
||
| CDS TCA 72 bp | CTGCTGCACCTGGCAAGAACTGCCCTCTTCGGGGACTaGAGGGGTTCTCAGCGGCTGACATTCCGTGGCTCT | + |
|
Preference number: 6 (lower is better) Translates to: LLHLARTALFGD*RGSQRLTFRGS Trigger: AGAGCCACGGAATGTCAGCCGCTGAGAACCCCTTCAGTCCCCGAAGAGGGCAGTTCTTGCCAGGTGCAGCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037014.11 ENSMUST00000177808.3 |
||
| CDS GCA 72 bp | CAGAGACACCTCGAAGCAGACGCAGTGTCGGTGTTCTaGAGGGCTCTCCAGAGCTTCCTAGATTCAGAACAG | + |
|
Preference number: 6 (lower is better) Translates to: QRHLEADAVSVF*RALQSFLDSEQ Trigger: CTGTTCTGAATCTAGGAAGCTCTGGAGAGCCCTGCAGAACACCGACACTGCGTCTGCTTCGAGGTGTCTCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037014.11 ENSMUST00000177808.3 |
||
| CDS TCA 72 bp | GAATCAGGGCTTTGCAGTGGTGCAGGTGGAAACCGCTaGCAGCCAGCAGCTCTTCAGGTTTTCTCAAGTCAG | + |
|
Preference number: 6 (lower is better) Translates to: ESGLCSGAGGNR*QPAALQVFSSQ Trigger: CTGACTTGAGAAAACCTGAAGAGCTGCTGGCTGTCAGCGGTTTCCACCTGCACCACTGCAAAGCCCTGATTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037014.11 ENSMUST00000177808.3 |
||
| CDS TCA 72 bp | AAGCCTAAAAACCTTCTCATAGCTGGGAATGGACTCTaGAGATGGGCCAGCAGCAGTTCCTGTCACCCAGGG | + |
|
Preference number: 6 (lower is better) Translates to: KPKNLLIAGNGL*RWASSSSCHPG Trigger: CCCTGGGTGACAGGAACTGCTGCTGGCCCATCTTCAGAGTCCATTCCCAGCTATGAGAAGGTTTTTAGGCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000037014.11 ENSMUST00000177808.3 |
||
| CDS CAA 90 bp | GTCCAGGGAGCAAACGTCTTCAGGAGCCTGTTCCACGGCGACTTCTaGAAACGCAAGCCTAAAAACCTTCTCATAGCTGGGAATGGACTC | + |
|
Preference number: 6 (lower is better) Translates to: VQGANVFRSLFHGDF*KRKPKNLLIAGNGL Trigger: GAGTCCATTCCCAGCTATGAGAAGGTTTTTAGGCTTGCGTTTCAAGAAGTCGCCGTGGAACAGGCTCCTGAAGACGTTTGCTCCCTGGAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000037014.11 ENSMUST00000177808.3 |
||
| CDS GCA 72 bp | CAGAACAGAGTCTCGGCACAGATGCAGCCCCTTCATTaGTTCTTTCCAAGAAATGGTCCAGGGAGCAAACGT | + |
|
Preference number: 6 (lower is better) Translates to: QNRVSAQMQPLH*FFPRNGPGSKR Trigger: ACGTTTGCTCCCTGGACCATTTCTTGGAAAGAAGCAATGAAGGGGCTGCATCTGTGCCGAGACTCTGTTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037014.11 ENSMUST00000177808.3 |
||
| CDS CAA 72 bp | GCAAACGTCTTCAGGAGCCTGTTCCACGGCGACTTCTaGAAACGCAAGCCTAAAAACCTTCTCATAGCTGGG | + |
|
Preference number: 6 (lower is better) Translates to: ANVFRSLFHGDF*KRKPKNLLIAG Trigger: CCCAGCTATGAGAAGGTTTTTAGGCTTGCGTTTCAAGAAGTCGCCGTGGAACAGGCTCCTGAAGACGTTTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000037014.11 ENSMUST00000177808.3 |
||