Pregenerated sensors for CKS1BRT (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062687Ensembl transcript IDs: ENSMUST00000076896.6, ENSMUST00000211617.2
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AATGAAGCACAATGCACAAGTATCCCAGGAAGGTCAGAGGTTCCCTaGAAAGGCGAAGGCCAGCAGAGGAACTCTCCACCAGTGGAAGAA | + |
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Preference number: 1 (lower is better) Translates to: NEAQCTSIPGRSEVP*KGEGQQRNSPPVEE Trigger: TTCTTCCACTGGTGGAGAGTTCCTCTGCTGGCCTTCGCCTTTGCAGGGAACCTCTGACCTTCCTGGGATACTTGTGCATTGTGCTTCATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR TCA 90 bp | GTCAGTAGTATTGTATTCTTGCCATTTCCCCAAACTCTCCATAGATaGGTTAGGGTCTTATTGTCTCCCGGAGTCATCGGCTTGTTCTTC | + |
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Preference number: 1 (lower is better) Translates to: VSSIVFLPFPQTLHR*VRVLLSPGVIGLFF Trigger: GAAGAACAAGCCGATGACTCCGGGAGACAATAAGACCCTAACTCATCTATGGAGAGTTTGGGGAAATGGCAAGAATACAATACTACTGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR TCA 90 bp | AGCGTAGCTTTCCCTGGGGTTAAAAGAACATCAGGCCCTTTCCATTaGTTAATCTGTAGATCCTTCCTCTTAACATACTTTAGGCTGAGT | + |
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Preference number: 1 (lower is better) Translates to: SVAFPGVKRTSGPFH*LICRSFLLTYFRLS Trigger: ACTCAGCCTAAAGTATGTTAAGAGGAAGGATCTACAGATTAATCAATGGAAAGGGCCTGATGTTCTTTTAACCCCAGGGAAAGCTACGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR-3UTR CCA 90 bp | GCACAAGTATCCCAGGAAGGTCAGAGGTTCCCTGCAAAGGCGAAGGCCAGCAGATGTGGCTGGCACTGGTaGCTCAACTCCAGAAGCAAA | + |
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Preference number: 2 (lower is better) Translates to: AQVSQEGQRFPAKAKASRCGWHW*LNSRSK Trigger: TTTGCTTCTGGAGTTGAGCCACCAGTGCCAGCCACA...TCTGCTGGCCTTCGCCTTTGCAGGGAACCTCTGACCTTCCTGGGATACTTGTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR-3UTR CCA 90 bp | TTATTGTCTCCCGGAGTCATCGGCTTGTTCTTCCTCTTGGGGTGTCTTCTCTTGGGCTGTGGCTGGCACTaGTGGCTCAACTCCAGAAGC | + |
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Preference number: 2 (lower is better) Translates to: LLSPGVIGLFFLLGCLLLGCGWH*WLNSRS Trigger: GCTTCTGGAGTTGAGCCACCAGTGCCAGCCACAGCC...CAAGAGAAGACACCCCAAGAGGAAGAACAAGCCGATGACTCCGGGAGACAATAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR-3UTR TCA 90 bp | GCACAAGTATCCCAGGAAGGTCAGAGGTTCCCTGCAAAGGCGAAGGCCAGCAGACATGCTTCTGCCAAATaGCTAATATGGCCTGCTGGA | + |
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Preference number: 2 (lower is better) Translates to: AQVSQEGQRFPAKAKASRHASAK*LIWPAG Trigger: TCCAGCAGGCCATATTAGTCATTTGGCAGAAGCATG...TCTGCTGGCCTTCGCCTTTGCAGGGAACCTCTGACCTTCCTGGGATACTTGTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR-3UTR GCA 90 bp | GCACAAGTATCCCAGGAAGGTCAGAGGTTCCCTGCAAAGGCGAAGGCCAGCAGAAAGACATGTGGACCCTaGATTGATGAGCTGAGAGTT | + |
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Preference number: 2 (lower is better) Translates to: AQVSQEGQRFPAKAKASRKTCGP*IDELRV Trigger: AACTCTCAGCTCATCAATGCAGGGTCCACATGTCTT...TCTGCTGGCCTTCGCCTTTGCAGGGAACCTCTGACCTTCCTGGGATACTTGTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR-3UTR TCA 90 bp | GCACAAGTATCCCAGGAAGGTCAGAGGTTCCCTGCAAAGGCGAAGGCCAGCAGATCAGGCCCTTTCCATTaGTTAATCTGTAGATCCTTC | + |
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Preference number: 2 (lower is better) Translates to: AQVSQEGQRFPAKAKASRSGPFH*LICRSF Trigger: GAAGGATCTACAGATTAATCAATGGAAAGGGCCTGA...TCTGCTGGCCTTCGCCTTTGCAGGGAACCTCTGACCTTCCTGGGATACTTGTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR-3UTR CCA 90 bp | AAAGACACAAGCGTAGCTTTCCCTGGGGTTAAAAGAACATCAGGCCCTTTCCATCATCTGACAGGGCTGTaGCTGGCACTGGTGGCTCAA | + |
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Preference number: 2 (lower is better) Translates to: KDTSVAFPGVKRTSGPFHHLTGL*LALVAQ Trigger: TTGAGCCACCAGTGCCAGCCACAGCCCTGTCAGATG...ATGGAAAGGGCCTGATGTTCTTTTAACCCCAGGGAAAGCTACGCTTGTGTCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR-3UTR TCA 90 bp | GCACAAGTATCCCAGGAAGGTCAGAGGTTCCCTGCAAAGGCGAAGGCCAGCAGAGGAAACGTTTCCATGTaGCAATTATCACAACCAAAG | + |
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Preference number: 2 (lower is better) Translates to: AQVSQEGQRFPAKAKASRGNVSM*QLSQPK Trigger: CTTTGGTTGTGATAATTGTCACATGGAAACGTTTCC...TCTGCTGGCCTTCGCCTTTGCAGGGAACCTCTGACCTTCCTGGGATACTTGTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR-3UTR TCA 90 bp | GGGTCAGTAGTATTGTATTCTTGCCATTTCCCCAAACTCTCCATAGATGAGTTAGAGGTCACACTCATCTaGCAGGGCTGTGGCTGGCAC | + |
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Preference number: 2 (lower is better) Translates to: GSVVLYSCHFPKLSIDELEVTLI*QGCGWH Trigger: GTGCCAGCCACAGCCCTGTCAGATGAGTGTGACCTC...TAACTCATCTATGGAGAGTTTGGGGAAATGGCAAGAATACAATACTACTGACCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR-3UTR TCA 90 bp | ACGATCAGTAAACGTAACAGCAACATACTGGGGTCAGTAGTATTGTATTCTTGCGAGGTCACACTCATCTaGCAGGGCTGTGGCTGGCAC | + |
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Preference number: 2 (lower is better) Translates to: TISKRNSNILGSVVLYSCEVTLI*QGCGWH Trigger: GTGCCAGCCACAGCCCTGTCAGATGAGTGTGACCTC...GCAAGAATACAATACTACTGACCCCAGTATGTTGCTGTTACGTTTACTGATCGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR-3UTR TCA 90 bp | GCACAAGTATCCCAGGAAGGTCAGAGGTTCCCTGCAAAGGCGAAGGCCAGCAGACCAAATTCTGCAATATaGGTAATGTTTGCCAAATGG | + |
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Preference number: 2 (lower is better) Translates to: AQVSQEGQRFPAKAKASRPNSAI*VMFAKW Trigger: CCATTTGGCAAACATTACTCATATTGCAGAATTTGG...TCTGCTGGCCTTCGCCTTTGCAGGGAACCTCTGACCTTCCTGGGATACTTGTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR-3UTR TCA 90 bp | GCACAAGTATCCCAGGAAGGTCAGAGGTTCCCTGCAAAGGCGAAGGCCAGCAGAAGGCGTGACTACATTTaGAACTCCTTTTCAAATTAC | + |
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Preference number: 2 (lower is better) Translates to: AQVSQEGQRFPAKAKASRRRDYI*NSFSNY Trigger: GTAATTTGAAAAGGAGTTTCAAATGTAGTCACGCCT...TCTGCTGGCCTTCGCCTTTGCAGGGAACCTCTGACCTTCCTGGGATACTTGTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR-3UTR CCA 90 bp | TTGATGAGTATGTCATCTATCTTTAGACATTTCATCAATGCAGGAGCCACCTGTGGCTGTGGCTGGCACTaGTGGCTCAACTCCAGAAGC | + |
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Preference number: 2 (lower is better) Translates to: LMSMSSIFRHFINAGATCGCGWH*WLNSRS Trigger: GCTTCTGGAGTTGAGCCACCAGTGCCAGCCACAGCC...ACAGGTGGCTCCTGCATTGATGAAATGTCTAAAGATAGATGACATACTCATCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR-3UTR TCA 90 bp | TTATTGTCTCCCGGAGTCATCGGCTTGTTCTTCCTCTTGGGGTGTCTTCTCTTGTCAGGCCCTTTCCATTaGTTAATCTGTAGATCCTTC | + |
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Preference number: 2 (lower is better) Translates to: LLSPGVIGLFFLLGCLLLSGPFH*LICRSF Trigger: GAAGGATCTACAGATTAATCAATGGAAAGGGCCTGA...CAAGAGAAGACACCCCAAGAGGAAGAACAAGCCGATGACTCCGGGAGACAATAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR-3UTR TCA 90 bp | TTATTGTCTCCCGGAGTCATCGGCTTGTTCTTCCTCTTGGGGTGTCTTCTCTTGTGTGACATCATTTTCTaGAAAGACACAAGCGTAGCT | + |
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Preference number: 2 (lower is better) Translates to: LLSPGVIGLFFLLGCLLLCDIIF*KDTSVA Trigger: AGCTACGCTTGTGTCTTTTCAGAAAATGATGTCACA...CAAGAGAAGACACCCCAAGAGGAAGAACAAGCCGATGACTCCGGGAGACAATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR-3UTR CCA 90 bp | ACGATCAGTAAACGTAACAGCAACATACTGGGGTCAGTAGTATTGTATTCTTGCTGTGGCTGGCACTGGTaGCTCAACTCCAGAAGCAAA | + |
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Preference number: 2 (lower is better) Translates to: TISKRNSNILGSVVLYSCCGWHW*LNSRSK Trigger: TTTGCTTCTGGAGTTGAGCCACCAGTGCCAGCCACA...GCAAGAATACAATACTACTGACCCCAGTATGTTGCTGTTACGTTTACTGATCGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR CAA 90 bp | TCTCCCGGAGTCATCGGCTTGTTCTTCCTCTTGGGGTGTCTTCTCTaGATGAGTATGTCATCTATCTTTAGACATTTCATCAATGCAGGA | + |
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Preference number: 2 (lower is better) Translates to: SPGVIGLFFLLGCLL*MSMSSIFRHFINAG Trigger: TCCTGCATTGATGAAATGTCTAAAGATAGATGACATACTCATCAAGAGAAGACACCCCAAGAGGAAGAACAAGCCGATGACTCCGGGAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR-3UTR TCA 90 bp | TTATTGTCTCCCGGAGTCATCGGCTTGTTCTTCCTCTTGGGGTGTCTTCTCTTGCCAAATTCTGCAATATaGGTAATGTTTGCCAAATGG | + |
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Preference number: 2 (lower is better) Translates to: LLSPGVIGLFFLLGCLLLPNSAI*VMFAKW Trigger: CCATTTGGCAAACATTACTCATATTGCAGAATTTGG...CAAGAGAAGACACCCCAAGAGGAAGAACAAGCCGATGACTCCGGGAGACAATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR-3UTR GCA 90 bp | AAAGACACAAGCGTAGCTTTCCCTGGGGTTAAAAGAACATCAGGCCCTTTCCATGATTTCACATGCTTCTaGCAAATGACTAATATGGCC | + |
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Preference number: 2 (lower is better) Translates to: KDTSVAFPGVKRTSGPFHDFTCF*QMTNMA Trigger: GGCCATATTAGTCATTTGGCAGAAGCATGTGAAATC...ATGGAAAGGGCCTGATGTTCTTTTAACCCCAGGGAAAGCTACGCTTGTGTCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR-3UTR TCA 90 bp | ACGATCAGTAAACGTAACAGCAACATACTGGGGTCAGTAGTATTGTATTCTTGCTGCAGGAGCCACCTGTaGCATCATTTTCTGAAAAGA | + |
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Preference number: 2 (lower is better) Translates to: TISKRNSNILGSVVLYSCCRSHL*HHFLKR Trigger: TCTTTTCAGAAAATGATGTCACAGGTGGCTCCTGCA...GCAAGAATACAATACTACTGACCCCAGTATGTTGCTGTTACGTTTACTGATCGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR CAA 90 bp | AATACGATCAGTAAACGTAACAGCAACATACTGGGGTCAGTAGTATaGTATTCTTGCCATTTCCCCAAACTCTCCATAGATGAGTTAGGG | + |
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Preference number: 2 (lower is better) Translates to: NTISKRNSNILGSVV*YSCHFPKLSIDELG Trigger: CCCTAACTCATCTATGGAGAGTTTGGGGAAATGGCAAGAATACAATACTACTGACCCCAGTATGTTGCTGTTACGTTTACTGATCGTATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR-3UTR GCA 90 bp | GGGTCAGTAGTATTGTATTCTTGCCATTTCCCCAAACTCTCCATAGATGAGTTAGATTTCACATGCTTCTaGCAAATGACTAATATGGCC | + |
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Preference number: 2 (lower is better) Translates to: GSVVLYSCHFPKLSIDELDFTCF*QMTNMA Trigger: GGCCATATTAGTCATTTGGCAGAAGCATGTGAAATC...TAACTCATCTATGGAGAGTTTGGGGAAATGGCAAGAATACAATACTACTGACCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR-3UTR CAA 90 bp | GCACAAGTATCCCAGGAAGGTCAGAGGTTCCCTGCAAAGGCGAAGGCCAGCAGAAAGCACACGAGGGCTTaGAGGTCACACTCATCTGAC | + |
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Preference number: 3 (lower is better) Translates to: AQVSQEGQRFPAKAKASRKHTRA*RSHSSD Trigger: GTCAGATGAGTGTGACCTCAAAGCCCTCGTGTGCTT...TCTGCTGGCCTTCGCCTTTGCAGGGAACCTCTGACCTTCCTGGGATACTTGTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR GCA 72 bp | CAATGCACAAGTATCCCAGGAAGGTCAGAGGTTCCCTaGAAAGGCGAAGGCCAGCAGAGGAACTCTCCACCA | + |
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Preference number: 3 (lower is better) Translates to: QCTSIPGRSEVP*KGEGQQRNSPP Trigger: TGGTGGAGAGTTCCTCTGCTGGCCTTCGCCTTTGCAGGGAACCTCTGACCTTCCTGGGATACTTGTGCATTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR-3UTR CAA 90 bp | TTATTGTCTCCCGGAGTCATCGGCTTGTTCTTCCTCTTGGGGTGTCTTCTCTTGAAGCACACGAGGGCTTaGAGGTCACACTCATCTGAC | + |
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Preference number: 3 (lower is better) Translates to: LLSPGVIGLFFLLGCLLLKHTRA*RSHSSD Trigger: GTCAGATGAGTGTGACCTCAAAGCCCTCGTGTGCTT...CAAGAGAAGACACCCCAAGAGGAAGAACAAGCCGATGACTCCGGGAGACAATAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR-3UTR CAA 90 bp | GCACAAGTATCCCAGGAAGGTCAGAGGTTCCCTGCAAAGGCGAAGGCCAGCAGATTGGGGTGTCTTCTCTaGATGAGTATGTCATCTATC | + |
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Preference number: 3 (lower is better) Translates to: AQVSQEGQRFPAKAKASRLGCLL*MSMSSI Trigger: GATAGATGACATACTCATCAAGAGAAGACACCCCAA...TCTGCTGGCCTTCGCCTTTGCAGGGAACCTCTGACCTTCCTGGGATACTTGTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR GCA 72 bp | CACCATCCCTGTAACAGCCATGATCTAGATTTCACATaGTTCTGCCAAATGACTAATATGGCCTGCTGGATC | + |
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Preference number: 3 (lower is better) Translates to: HHPCNSHDLDFT*FCQMTNMACWI Trigger: GATCCAGCAGGCCATATTAGTCATTTGGCAGAAGCATGTGAAATCTAGATCATGGCTGTTACAGGGATGGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR TCA 72 bp | TTCATCAATGCAGGAGCCACCTGTGACATCATTTTCTaGAAAGACACAAGCGTAGCTTTCCCTGGGGTTAAA | + |
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Preference number: 3 (lower is better) Translates to: FINAGATCDIIF*KDTSVAFPGVK Trigger: TTTAACCCCAGGGAAAGCTACGCTTGTGTCTTTTCAGAAAATGATGTCACAGGTGGCTCCTGCATTGATGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR GCA 72 bp | AACAGCAACATACTGGGGTCAGTAGTATTGTATTCTTaGCATTTCCCCAAACTCTCCATAGATGAGTTAGGG | + |
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Preference number: 3 (lower is better) Translates to: NSNILGSVVLYS*HFPKLSIDELG Trigger: CCCTAACTCATCTATGGAGAGTTTGGGGAAATGGCAAGAATACAATACTACTGACCCCAGTATGTTGCTGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR TCA 72 bp | AGGCTGCATGCCATCTTTAATCCACGCTACTGGTTCTaGAAGATAAAAACAATATTTAGCATGGCAAGACAC | + |
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Preference number: 3 (lower is better) Translates to: RLHAIFNPRYWF*KIKTIFSMARH Trigger: GTGTCTTGCCATGCTAAATATTGTTTTTATCTTTCAGAACCAGTAGCGTGGATTAAAGATGGCATGCAGCCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR TCA 72 bp | TTCCCTGGGGTTAAAAGAACATCAGGCCCTTTCCATTaGTTAATCTGTAGATCCTTCCTCTTAACATACTTT | + |
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Preference number: 3 (lower is better) Translates to: FPGVKRTSGPFH*LICRSFLLTYF Trigger: AAAGTATGTTAAGAGGAAGGATCTACAGATTAATCAATGGAAAGGGCCTGATGTTCTTTTAACCCCAGGGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR CCA 72 bp | AGTTCTAGAAAGGAGAGATGTATAGTAAATAACTTATaGTATCCAAGATTGTTTCACCCCTGTGAGCAAAAC | + |
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Preference number: 3 (lower is better) Translates to: SSRKERCIVNNL*YPRLFHPCEQN Trigger: GTTTTGCTCACAGGGGTGAAACAATCTTGGATACCATAAGTTATTTACTATACATCTCTCCTTTCTAGAACT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| CDS-3UTR GCA 90 bp | GCACAAGTATCCCAGGAAGGTCAGAGGTTCCCTGCAAAGGCGAAGGCCAGCAGATTGGGCAACATGACATaGCGGTACTCGAACTCCTCG | + |
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Preference number: 4 (lower is better) Translates to: AQVSQEGQRFPAKAKASRLGNMT*RYSNSS Trigger: CGAGGAGTTCGAGTACCGGCATGTCATGTTGCCCAA...TCTGCTGGCCTTCGCCTTTGCAGGGAACCTCTGACCTTCCTGGGATACTTGTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| CDS-3UTR GCA 90 bp | AAAGACACAAGCGTAGCTTTCCCTGGGGTTAAAAGAACATCAGGCCCTTTCCATTTGGGCAACATGACATaGCGGTACTCGAACTCCTCG | + |
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Preference number: 4 (lower is better) Translates to: KDTSVAFPGVKRTSGPFHLGNMT*RYSNSS Trigger: CGAGGAGTTCGAGTACCGGCATGTCATGTTGCCCAA...ATGGAAAGGGCCTGATGTTCTTTTAACCCCAGGGAAAGCTACGCTTGTGTCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR CAA 72 bp | GTCATCGGCTTGTTCTTCCTCTTGGGGTGTCTTCTCTaGATGAGTATGTCATCTATCTTTAGACATTTCATC | + |
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Preference number: 4 (lower is better) Translates to: VIGLFFLLGCLL*MSMSSIFRHFI Trigger: GATGAAATGTCTAAAGATAGATGACATACTCATCAAGAGAAGACACCCCAAGAGGAAGAACAAGCCGATGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR CAA 72 bp | AGTAAACGTAACAGCAACATACTGGGGTCAGTAGTATaGTATTCTTGCCATTTCCCCAAACTCTCCATAGAT | + |
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Preference number: 4 (lower is better) Translates to: SKRNSNILGSVV*YSCHFPKLSID Trigger: ATCTATGGAGAGTTTGGGGAAATGGCAAGAATACAATACTACTGACCCCAGTATGTTGCTGTTACGTTTACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| 3UTR CAA 72 bp | GAGAGATGTATAGTAAATAACTTATGGTATCCAAGATaGTTTCACCCCTGTGAGCAAAACAGTCACATTAGA | + |
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Preference number: 4 (lower is better) Translates to: ERCIVNNLWYPR*FHPCEQNSHIR Trigger: TCTAATGTGACTGTTTTGCTCACAGGGGTGAAACAATCTTGGATACCATAAGTTATTTACTATACATCTCTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| CDS-3UTR CAA 90 bp | TTATTGTCTCCCGGAGTCATCGGCTTGTTCTTCCTCTTGGGGTGTCTTCTCTTGAACTTGTCTATGTCCTaGGGCAACATGACATGCCGG | + |
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Preference number: 5 (lower is better) Translates to: LLSPGVIGLFFLLGCLLLNLSMS*GNMTCR Trigger: CCGGCATGTCATGTTGCCCAAGGACATAGACAAGTT...CAAGAGAAGACACCCCAAGAGGAAGAACAAGCCGATGACTCCGGGAGACAATAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| CDS-3UTR CAA 90 bp | TTATTGTCTCCCGGAGTCATCGGCTTGTTCTTCCTCTTGGGGTGTCTTCTCTTGGTCCGAATAATAGATTaGTTTGTGGGACATGATTGC | + |
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Preference number: 5 (lower is better) Translates to: LLSPGVIGLFFLLGCLLLVRIID*FVGHDC Trigger: GCAATCATGTCCCACAAACAAATCTATTATTCGGAC...CAAGAGAAGACACCCCAAGAGGAAGAACAAGCCGATGACTCCGGGAGACAATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| CDS-3UTR CAA 90 bp | AAAGACACAAGCGTAGCTTTCCCTGGGGTTAAAAGAACATCAGGCCCTTTCCATGTCCGAATAATAGATTaGTTTGTGGGACATGATTGC | + |
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Preference number: 5 (lower is better) Translates to: KDTSVAFPGVKRTSGPFHVRIID*FVGHDC Trigger: GCAATCATGTCCCACAAACAAATCTATTATTCGGAC...ATGGAAAGGGCCTGATGTTCTTTTAACCCCAGGGAAAGCTACGCTTGTGTCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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| CDS-3UTR CAA 90 bp | TTGATGAGTATGTCATCTATCTTTAGACATTTCATCAATGCAGGAGCCACCTGTAACTTGTCTATGTCCTaGGGCAACATGACATGCCGG | + |
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Preference number: 5 (lower is better) Translates to: LMSMSSIFRHFINAGATCNLSMS*GNMTCR Trigger: CCGGCATGTCATGTTGCCCAAGGACATAGACAAGTT...ACAGGTGGCTCCTGCATTGATGAAATGTCTAAAGATAGATGACATACTCATCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076896.6 ENSMUST00000211617.2 |
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