Pregenerated sensors for CKS1B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028044

Ensembl transcript IDs: ENSMUST00000029679.4, ENSMUST00000107422.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	CAAATGACTAATATGGCCTGCTGGGTCCCGCGCACACGAGGGCTTTaGGGTCACACTCATCTGACAGGGCTGTGGCACTGGTGGCTCAAC	+
Preference number: 1 (lower is better) Translates to: QMTNMACWVPRTRGL*GHTHLTGLWHWWLN Trigger: GTTGAGCCACCAGTGCCACAGCCCTGTCAGATGAGTGTGACCTCAAAGCCCTCGTGTGCGCGGGACCCAGCAGGCCATATTAGTCATTTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029679.4 ENSMUST00000107422.2
3UTR GCA 90 bp	TCACACCATCCTTGTAACAGCCATGATCTAGATTTCACATGCTTCTaGCAAATGACTAATATGGCCTGCTGGGTCCCGCGCACACGAGGG	+
Preference number: 1 (lower is better) Translates to: SHHPCNSHDLDFTCF*QMTNMACWVPRTRG Trigger: CCCTCGTGTGCGCGGGACCCAGCAGGCCATATTAGTCATTTGGCAGAAGCATGTGAAATCTAGATCATGGCTGTTACAAGGATGGTGTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029679.4 ENSMUST00000107422.2
3UTR GCA 90 bp	GCAAATTCACACCATCCTTGTAACAGCCATGATCTAGATTTCACATaGTTCTGCCAAATGACTAATATGGCCTGCTGGGTCCCGCGCACA	+
Preference number: 1 (lower is better) Translates to: ANSHHPCNSHDLDFT*FCQMTNMACWVPRT Trigger: TGTGCGCGGGACCCAGCAGGCCATATTAGTCATTTGGCAGAAGCATGTGAAATCTAGATCATGGCTGTTACAAGGATGGTGTGAATTTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029679.4 ENSMUST00000107422.2
3UTR-3UTR CCA 90 bp	GCGCACACGAGGGCTTTGAGGTCACACTCATCTGACAGGGCTGTGGCACTGGTGACGCGATCAGAAAGATaGCAGGGAGTGAGGACAGCT	+
Preference number: 2 (lower is better) Translates to: AHTRALRSHSSDRAVALVTRSER*QGVRTA Trigger: AGCTGTCCTCACTCCCTGCCATCTTTCTGATCGCGT...CACCAGTGCCACAGCCCTGTCAGATGAGTGTGACCTCAAAGCCCTCGTGTGCGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029679.4 ENSMUST00000107422.2
3UTR-3UTR CCA 90 bp	GCGCACACGAGGGCTTTGAGGTCACACTCATCTGACAGGGCTGTGGCACTGGTGAATAAGAAAGCAACATaGTCACGCGATCAGAAAGAT	+
Preference number: 2 (lower is better) Translates to: AHTRALRSHSSDRAVALVNKKAT*SRDQKD Trigger: ATCTTTCTGATCGCGTGACCATGTTGCTTTCTTATT...CACCAGTGCCACAGCCCTGTCAGATGAGTGTGACCTCAAAGCCCTCGTGTGCGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029679.4 ENSMUST00000107422.2
3UTR-3UTR CCA 90 bp	GCTTTGAGGTCACACTCATCTGACAGGGCTGTGGCACTGGTGGCTCAACTCCAGAATAAGAAAGCAACATaGTCACGCGATCAGAAAGAT	+
Preference number: 2 (lower is better) Translates to: ALRSHSSDRAVALVAQLQNKKAT*SRDQKD Trigger: ATCTTTCTGATCGCGTGACCATGTTGCTTTCTTATT...CTGGAGTTGAGCCACCAGTGCCACAGCCCTGTCAGATGAGTGTGACCTCAAAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029679.4 ENSMUST00000107422.2
3UTR TCA 72 bp	AATATGGCCTGCTGGGTCCCGCGCACACGAGGGCTTTaGGGTCACACTCATCTGACAGGGCTGTGGCACTGG	+
Preference number: 3 (lower is better) Translates to: NMACWVPRTRGL*GHTHLTGLWHW Trigger: CCAGTGCCACAGCCCTGTCAGATGAGTGTGACCTCAAAGCCCTCGTGTGCGCGGGACCCAGCAGGCCATATT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029679.4 ENSMUST00000107422.2
3UTR GCA 72 bp	CCTTGTAACAGCCATGATCTAGATTTCACATGCTTCTaGCAAATGACTAATATGGCCTGCTGGGTCCCGCGC	+
Preference number: 3 (lower is better) Translates to: PCNSHDLDFTCF*QMTNMACWVPR Trigger: GCGCGGGACCCAGCAGGCCATATTAGTCATTTGGCAGAAGCATGTGAAATCTAGATCATGGCTGTTACAAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029679.4 ENSMUST00000107422.2
CDS-3UTR TCA 90 bp	GCTTTGAGGTCACACTCATCTGACAGGGCTGTGGCACTGGTGGCTCAACTCCAGTGTCCTTGGGCAACATaGCATGCCGGTATTCGAACT	+
Preference number: 4 (lower is better) Translates to: ALRSHSSDRAVALVAQLQCPWAT*HAGIRT Trigger: AGTTCGAATACCGGCATGTCATGTTGCCCAAGGACA...CTGGAGTTGAGCCACCAGTGCCACAGCCCTGTCAGATGAGTGTGACCTCAAAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029679.4

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