Pregenerated sensors for CKMT2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021622Ensembl transcript IDs: ENSMUST00000022122.4
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | ACTTCCTGTGTCTGTCATACCAGCAGACAGTTTACCCATAAACTTGGAGGGATACACTTCCTGCCAAACTaGGGCAGAGGAGGGGGCACC | + |
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Preference number: 4 (lower is better) Translates to: TSCVCHTSRQFTHKLGGIHFLPN*GRGGGT Trigger: GGTGCCCCCTCCTCTGCCTCAGTTTGGCAGGAAGTG...TATCCCTCCAAGTTTATGGGTAAACTGTCTGCTGGTATGACAGACACAGGAAGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS-3UTR CCA 90 bp | TTTTACATGTTCAAGTCTACAAAAACTCTCAGAGCAGAGACTTCCTGTGTCTGTTGCTCGGGAGCAGGCTaGAGGCAGGCTCAGCCCGCG | + |
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Preference number: 4 (lower is better) Translates to: FYMFKSTKTLRAETSCVCCSGAG*RQAQPA Trigger: CGCGGGCTGAGCCTGCCTCCAGCCTGCTCCCGAGCA...ACAGACACAGGAAGTCTCTGCTCTGAGAGTTTTTGTAGACTTGAACATGTAAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS-3UTR GCA 90 bp | ATTTTACATGTTCAAGTCTACAAAAACTCTCAGAGCAGAGACTTCCTGTGTCTGGGCTCAGCCCGCGGATaGTTCGGCCAGTGCGTACCC | + |
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Preference number: 4 (lower is better) Translates to: ILHVQVYKNSQSRDFLCLGSARG*FGQCVP Trigger: GGGTACGCACTGGCCGAAGCATCCGCGGGCTGAGCC...CAGACACAGGAAGTCTCTGCTCTGAGAGTTTTTGTAGACTTGAACATGTAAAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS-3UTR CCA 90 bp | ACTTCCTGTGTCTGTCATACCAGCAGACAGTTTACCCATAAACTTGGAGGGATATATGCCAGATTCCCCTaGCATCAGGCCAGTCACGGG | + |
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Preference number: 4 (lower is better) Translates to: TSCVCHTSRQFTHKLGGIYARFP*HQASHG Trigger: CCCGTGACTGGCCTGATGCCAGGGGAATCTGGCATA...TATCCCTCCAAGTTTATGGGTAAACTGTCTGCTGGTATGACAGACACAGGAAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS-3UTR TCA 90 bp | TCCTGTGTCTGTCATACCAGCAGACAGTTTACCCATAAACTTGGAGGGATAAAACATAGATGGTGGGGGTaGGGCACTCAGCCATGCAGT | + |
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Preference number: 4 (lower is better) Translates to: SCVCHTSRQFTHKLGGIKHRWWG*GTQPCS Trigger: ACTGCATGGCTGAGTGCCTCACCCCCACCATCTATG...TTTTATCCCTCCAAGTTTATGGGTAAACTGTCTGCTGGTATGACAGACACAGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS-3UTR TCA 90 bp | ACTTCCTGTGTCTGTCATACCAGCAGACAGTTTACCCATAAACTTGGAGGGATAGCCTCCCTTTTCCATTaGGATCACCCTGGTGTGGTC | + |
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Preference number: 4 (lower is better) Translates to: TSCVCHTSRQFTHKLGGIASLFH*DHPGVV Trigger: GACCACACCAGGGTGATCTCAATGGAAAAGGGAGGC...TATCCCTCCAAGTTTATGGGTAAACTGTCTGCTGGTATGACAGACACAGGAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS-3UTR TCA 90 bp | ATTTTACATGTTCAAGTCTACAAAAACTCTCAGAGCAGAGACTTCCTGTGTCTGGAGGAGGGGGCACCTTaGTGTCTTGGCCTCTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: ILHVQVYKNSQSRDFLCLEEGAP*CLGLSP Trigger: TGGAGAGAGGCCAAGACATCAAGGTGCCCCCTCCTC...CAGACACAGGAAGTCTCTGCTCTGAGAGTTTTTGTAGACTTGAACATGTAAAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS-3UTR GCA 90 bp | ACTTCCTGTGTCTGTCATACCAGCAGACAGTTTACCCATAAACTTGGAGGGATATCCAGGTCCGTAGGATaGTTCATCACCCTAGGGTCA | + |
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Preference number: 4 (lower is better) Translates to: TSCVCHTSRQFTHKLGGISRSVG*FITLGS Trigger: TGACCCTAGGGTGATGAAGCATCCTACGGACCTGGA...TATCCCTCCAAGTTTATGGGTAAACTGTCTGCTGGTATGACAGACACAGGAAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS-3UTR CCA 90 bp | ACTTCCTGTGTCTGTCATACCAGCAGACAGTTTACCCATAAACTTGGAGGGATATCCCAGCCTCGTTCCTaGATTAATCGTTCCACTTCC | + |
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Preference number: 4 (lower is better) Translates to: TSCVCHTSRQFTHKLGGISQPRS*INRSTS Trigger: GGAAGTGGAACGATTAATCCAGGAACGAGGCTGGGA...TATCCCTCCAAGTTTATGGGTAAACTGTCTGCTGGTATGACAGACACAGGAAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS-3UTR CCA 90 bp | TTTTACATGTTCAAGTCTACAAAAACTCTCAGAGCAGAGACTTCCTGTGTCTGTCCTGTGCCACGCTTTTaGAGCCGCAGGTTCTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: FYMFKSTKTLRAETSCVCPVPRF*SRRFSK Trigger: CTTGGAGAACCTGCGGCTCCAAAAGCGTGGCACAGG...ACAGACACAGGAAGTCTCTGCTCTGAGAGTTTTTGTAGACTTGAACATGTAAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS-3UTR CCA 90 bp | ATTTTACATGTTCAAGTCTACAAAAACTCTCAGAGCAGAGACTTCCTGTGTCTGAGGGTAGTCCGCACTTaGGGGAAAGAGCTTGTGCTG | + |
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Preference number: 4 (lower is better) Translates to: ILHVQVYKNSQSRDFLCLRVVRT*GKELVL Trigger: CAGCACAAGCTCTTTCCCCCAAGTGCGGACTACCCT...CAGACACAGGAAGTCTCTGCTCTGAGAGTTTTTGTAGACTTGAACATGTAAAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS-3UTR TCA 90 bp | ATTTTACATGTTCAAGTCTACAAAAACTCTCAGAGCAGAGACTTCCTGTGTCTGTCGATGAGACGTTGCTaGTCCTGCTCCGTCATCTCA | + |
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Preference number: 4 (lower is better) Translates to: ILHVQVYKNSQSRDFLCLSMRRC*SCSVIS Trigger: TGAGATGACGGAGCAGGATCAGCAACGTCTCATCGA...CAGACACAGGAAGTCTCTGCTCTGAGAGTTTTTGTAGACTTGAACATGTAAAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS-3UTR GCA 90 bp | TCCTGTGTCTGTCATACCAGCAGACAGTTTACCCATAAACTTGGAGGGATAAAAAATATCGTACACATCTaGCACTGCAGCAGTGTCCAC | + |
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Preference number: 4 (lower is better) Translates to: SCVCHTSRQFTHKLGGIKNIVHI*HCSSVH Trigger: GTGGACACTGCTGCAGTGGCAGATGTGTACGATATT...TTTTATCCCTCCAAGTTTATGGGTAAACTGTCTGCTGGTATGACAGACACAGGA 44% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS-3UTR CCA 90 bp | TCCTGTGTCTGTCATACCAGCAGACAGTTTACCCATAAACTTGGAGGGATAAAAGAGATCACCCTGGTGTaGTCTTCCTCATTTATCCAG | + |
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Preference number: 4 (lower is better) Translates to: SCVCHTSRQFTHKLGGIKEITLV*SSSFIQ Trigger: CTGGATAAATGAGGAAGACCACACCAGGGTGATCTC...TTTTATCCCTCCAAGTTTATGGGTAAACTGTCTGCTGGTATGACAGACACAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS-3UTR CCA 90 bp | ATTTTACATGTTCAAGTCTACAAAAACTCTCAGAGCAGAGACTTCCTGTGTCTGTTCGGGATCCTAACGTaGACACCAGCTCGCAATCCA | + |
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Preference number: 4 (lower is better) Translates to: ILHVQVYKNSQSRDFLCLFGILT*TPARNP Trigger: TGGATTGCGAGCTGGTGTCCACGTTAGGATCCCGAA...CAGACACAGGAAGTCTCTGCTCTGAGAGTTTTTGTAGACTTGAACATGTAAAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS-3UTR TCA 90 bp | ATTTTACATGTTCAAGTCTACAAAAACTCTCAGAGCAGAGACTTCCTGTGTCTGTCATCAAACTGCCCGTaGGTAATCTTGGATGCATCC | + |
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Preference number: 4 (lower is better) Translates to: ILHVQVYKNSQSRDFLCLSSNCP*VILDAS Trigger: GGATGCATCCAAGATTACTCACGGGCAGTTTGATGA...CAGACACAGGAAGTCTCTGCTCTGAGAGTTTTTGTAGACTTGAACATGTAAAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS-3UTR CCA 90 bp | ACTTCCTGTGTCTGTCATACCAGCAGACAGTTTACCCATAAACTTGGAGGGATATTATCAAACAGAAAGTaGTCATCGATGAGACGTTGC | + |
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Preference number: 4 (lower is better) Translates to: TSCVCHTSRQFTHKLGGILSNRK*SSMRRC Trigger: GCAACGTCTCATCGATGACCACTTTCTGTTTGATAA...TATCCCTCCAAGTTTATGGGTAAACTGTCTGCTGGTATGACAGACACAGGAAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS-3UTR TCA 90 bp | TTTTACATGTTCAAGTCTACAAAAACTCTCAGAGCAGAGACTTCCTGTGTCTGTCCGTCAATAACAATCTaGACAAGCTCAACCTCTGAT | + |
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Preference number: 4 (lower is better) Translates to: FYMFKSTKTLRAETSCVCPSITI*TSSTSD Trigger: ATCAGAGGTTGAGCTTGTTCAGATTGTTATTGACGG...ACAGACACAGGAAGTCTCTGCTCTGAGAGTTTTTGTAGACTTGAACATGTAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS-3UTR CCA 90 bp | TTTTACATGTTCAAGTCTACAAAAACTCTCAGAGCAGAGACTTCCTGTGTCTGTCGATCCGATCTATGTTaGAAATATCGTACACATCTG | + |
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Preference number: 4 (lower is better) Translates to: FYMFKSTKTLRAETSCVCRSDLC*KYRTHL Trigger: CAGATGTGTACGATATTTCCAACATAGATCGGATCG...ACAGACACAGGAAGTCTCTGCTCTGAGAGTTTTTGTAGACTTGAACATGTAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS CCA 90 bp | ATCTTAGAAAAGCGTGGATCCTTGCTGAGCTTCGGGATCCTAACGTaGACACCAGCTCGCAATCCAGTTCCGAGGTTCGAGGGGCAAGTC | + |
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Preference number: 5 (lower is better) Translates to: ILEKRGSLLSFGILT*TPARNPVPRFEGQV Trigger: GACTTGCCCCTCGAACCTCGGAACTGGATTGCGAGCTGGTGTCCACGTTAGGATCCCGAAGCTCAGCAAGGATCCACGCTTTTCTAAGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS GCA 90 bp | GGACAACACATAGCGCTCATCAAACTGCCCGTGAGTAATCTTGGATaGATCCAGGTCCGTAGGATGCTTCATCACCCTAGGGTCATAGCC | + |
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Preference number: 5 (lower is better) Translates to: GQHIALIKLPVSNLG*IQVRRMLHHPRVIA Trigger: GGCTATGACCCTAGGGTGATGAAGCATCCTACGGACCTGGATGCATCCAAGATTACTCACGGGCAGTTTGATGAGCGCTATGTGTTGTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS-3UTR CAA 90 bp | TCCTGTGTCTGTCATACCAGCAGACAGTTTACCCATAAACTTGGAGGGATAAAAGTTGTCCACTCCAGTTaGGATGCACTGGTCCAGGGT | + |
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Preference number: 5 (lower is better) Translates to: SCVCHTSRQFTHKLGGIKVVHSS*DALVQG Trigger: ACCCTGGACCAGTGCATCCAAACTGGAGTGGACAAC...TTTTATCCCTCCAAGTTTATGGGTAAACTGTCTGCTGGTATGACAGACACAGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS-3UTR CAA 90 bp | ACTTCCTGTGTCTGTCATACCAGCAGACAGTTTACCCATAAACTTGGAGGGATATGCCTCCCTTTTCCATaGAGATCACCCTGGTGTGGT | + |
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Preference number: 5 (lower is better) Translates to: TSCVCHTSRQFTHKLGGICLPFP*RSPWCG Trigger: ACCACACCAGGGTGATCTCAATGGAAAAGGGAGGCA...TATCCCTCCAAGTTTATGGGTAAACTGTCTGCTGGTATGACAGACACAGGAAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS-3UTR CAA 90 bp | ATTTTACATGTTCAAGTCTACAAAAACTCTCAGAGCAGAGACTTCCTGTGTCTGAGAGGAGGGGGCACCTaGATGTCTTGGCCTCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: ILHVQVYKNSQSRDFLCLRGGGT*MSWPLS Trigger: GGAGAGAGGCCAAGACATCAAGGTGCCCCCTCCTCT...CAGACACAGGAAGTCTCTGCTCTGAGAGTTTTTGTAGACTTGAACATGTAAAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS-3UTR CAA 90 bp | ATTTTACATGTTCAAGTCTACAAAAACTCTCAGAGCAGAGACTTCCTGTGTCTGACCTGTGCCACGCTTTaGGAGCCGCAGGTTCTCCAA | + |
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Preference number: 5 (lower is better) Translates to: ILHVQVYKNSQSRDFLCLTCATL*EPQVLQ Trigger: TTGGAGAACCTGCGGCTCCAAAAGCGTGGCACAGGT...CAGACACAGGAAGTCTCTGCTCTGAGAGTTTTTGTAGACTTGAACATGTAAAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS-3UTR CAA 90 bp | ATTTTACATGTTCAAGTCTACAAAAACTCTCAGAGCAGAGACTTCCTGTGTCTGGGGCACCTTGATGTCTaGGCCTCTCTCCAGCTTCTT | + |
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Preference number: 5 (lower is better) Translates to: ILHVQVYKNSQSRDFLCLGHLDV*ASLQLL Trigger: AAGAAGCTGGAGAGAGGCCAAGACATCAAGGTGCCC...CAGACACAGGAAGTCTCTGCTCTGAGAGTTTTTGTAGACTTGAACATGTAAAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS-3UTR CAA 90 bp | TTTTACATGTTCAAGTCTACAAAAACTCTCAGAGCAGAGACTTCCTGTGTCTGTCACTCAGCCATGCAGTaGTTATGTTTTCGAAGGTCA | + |
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Preference number: 5 (lower is better) Translates to: FYMFKSTKTLRAETSCVCHSAMQ*LCFRRS Trigger: TGACCTTCGAAAACATAACAACTGCATGGCTGAGTG...ACAGACACAGGAAGTCTCTGCTCTGAGAGTTTTTGTAGACTTGAACATGTAAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS-3UTR CAA 90 bp | TTTTACATGTTCAAGTCTACAAAAACTCTCAGAGCAGAGACTTCCTGTGTCTGTCCATTGTGCCTTAGTTaGATGACAGGATCAAAAAGG | + |
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Preference number: 5 (lower is better) Translates to: FYMFKSTKTLRAETSCVCPLCLS*MTGSKR Trigger: CCTTTTTGATCCTGTCATCAAACTAAGGCACAATGG...ACAGACACAGGAAGTCTCTGCTCTGAGAGTTTTTGTAGACTTGAACATGTAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS-3UTR CAA 90 bp | ATTTTACATGTTCAAGTCTACAAAAACTCTCAGAGCAGAGACTTCCTGTGTCTGAATACGCGTTTCATATaGCCTCCCTTTTCCATTGAG | + |
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Preference number: 5 (lower is better) Translates to: ILHVQVYKNSQSRDFLCLNTRFI*PPFSIE Trigger: CTCAATGGAAAAGGGAGGCAATATGAAACGCGTATT...CAGACACAGGAAGTCTCTGCTCTGAGAGTTTTTGTAGACTTGAACATGTAAAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS-3UTR CAA 90 bp | TTTTACATGTTCAAGTCTACAAAAACTCTCAGAGCAGAGACTTCCTGTGTCTGTCCGATCCGATCTATGTaGGAAATATCGTACACATCT | + |
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Preference number: 5 (lower is better) Translates to: FYMFKSTKTLRAETSCVCPIRSM*EISYTS Trigger: AGATGTGTACGATATTTCCAACATAGATCGGATCGG...ACAGACACAGGAAGTCTCTGCTCTGAGAGTTTTTGTAGACTTGAACATGTAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS CCA 72 bp | AAGCGTGGATCCTTGCTGAGCTTCGGGATCCTAACGTaGACACCAGCTCGCAATCCAGTTCCGAGGTTCGAG | + |
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Preference number: 6 (lower is better) Translates to: KRGSLLSFGILT*TPARNPVPRFE Trigger: CTCGAACCTCGGAACTGGATTGCGAGCTGGTGTCCACGTTAGGATCCCGAAGCTCAGCAAGGATCCACGCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS CAA 72 bp | GCCAAACTGAGGCAGAGGAGGGGGCACCTTGATGTCTaGGCCTCTCTCCAGCTTCTTTTCACAATCCACCAG | + |
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Preference number: 6 (lower is better) Translates to: AKLRQRRGHLDV*ASLQLLFTIHQ Trigger: CTGGTGGATTGTGAAAAGAAGCTGGAGAGAGGCCAAGACATCAAGGTGCCCCCTCCTCTGCCTCAGTTTGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS GCA 72 bp | ATAGCGCTCATCAAACTGCCCGTGAGTAATCTTGGATaGATCCAGGTCCGTAGGATGCTTCATCACCCTAGG | + |
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Preference number: 6 (lower is better) Translates to: IALIKLPVSNLG*IQVRRMLHHPR Trigger: CCTAGGGTGATGAAGCATCCTACGGACCTGGATGCATCCAAGATTACTCACGGGCAGTTTGATGAGCGCTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS CAA 72 bp | ACAAGCTCAACCTCTGATCTGCCGATCCGATCTATGTaGGAAATATCGTACACATCTGCCACTGCAGCAGTG | + |
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Preference number: 6 (lower is better) Translates to: TSSTSDLPIRSM*EISYTSATAAV Trigger: CACTGCTGCAGTGGCAGATGTGTACGATATTTCCAACATAGATCGGATCGGCAGATCAGAGGTTGAGCTTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS CAA 72 bp | AGTCCACGACAGAATCTCTCAAATACGCGTTTCATATaGCCTCCCTTTTCCATTGAGATCACCCTGGTGTGG | + |
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Preference number: 6 (lower is better) Translates to: SPRQNLSNTRFI*PPFSIEITLVW Trigger: CCACACCAGGGTGATCTCAATGGAAAAGGGAGGCAATATGAAACGCGTATTTGAGAGATTCTGTCGTGGACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS CAA 90 bp | ACTTCCTTTAGTCCACGACAGAATCTCTCAAATACGCGTTTCATATaGCCTCCCTTTTCCATTGAGATCACCCTGGTGTGGTCTTCCTCA | + |
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Preference number: 6 (lower is better) Translates to: TSFSPRQNLSNTRFI*PPFSIEITLVWSSS Trigger: TGAGGAAGACCACACCAGGGTGATCTCAATGGAAAAGGGAGGCAATATGAAACGCGTATTTGAGAGATTCTGTCGTGGACTAAAGGAAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS TCA 72 bp | CTCAAATACGCGTTTCATATTGCCTCCCTTTTCCATTaGGATCACCCTGGTGTGGTCTTCCTCATTTATCCA | + |
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Preference number: 6 (lower is better) Translates to: LKYAFHIASLFH*DHPGVVFLIYP Trigger: TGGATAAATGAGGAAGACCACACCAGGGTGATCTCAATGGAAAAGGGAGGCAATATGAAACGCGTATTTGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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| CDS CAA 72 bp | TCTCAAATACGCGTTTCATATTGCCTCCCTTTTCCATaGAGATCACCCTGGTGTGGTCTTCCTCATTTATCC | + |
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Preference number: 6 (lower is better) Translates to: SQIRVSYCLPFP*RSPWCGLPHLS Trigger: GGATAAATGAGGAAGACCACACCAGGGTGATCTCAATGGAAAAGGGAGGCAATATGAAACGCGTATTTGAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022122.4 |
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