Pregenerated sensors for CKLF (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054400Ensembl transcript IDs: ENSMUST00000034342.13, ENSMUST00000098464.6, ENSMUST00000211809.2, ENSMUST00000211829.2, ENSMUST00000212410.2, ENSMUST00000212433.2, ENSMUST00000212939.2
Found 101 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCCTGCACCTCCGGTTGGCTGGGTGGCCGCAGGGCGATGGCCCCCTaGGAAACTGTCTTCAACGGCTGCTGGCAGTCTATCCCGCGTGCA | + |
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Preference number: 1 (lower is better) Translates to: PCTSGWLGGRRAMAP*ETVFNGCWQSIPRA Trigger: TGCACGCGGGATAGACTGCCAGCAGCCGTTGAAGACAGTTTCCCAGGGGGCCATCGCCCTGCGGCCACCCAGCCAACCGGAGGTGCAGGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR GCA 90 bp | CAGGATTCATGGTGGGTTCCAAGCCTCATTATGTCAGGCTGGCCCTaGACCTCCGGTTGGCTGGGTGGCCGCAGGGCGATGGCCCCCTGG | + |
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Preference number: 1 (lower is better) Translates to: QDSWWVPSLIMSGWP*TSGWLGGRRAMAPW Trigger: CCAGGGGGCCATCGCCCTGCGGCCACCCAGCCAACCGGAGGTGCAGGGCCAGCCTGACATAATGAGGCTTGGAACCCACCATGAATCCTG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR CCA 90 bp | GTGGCTGAGGGTCCTGCGCTCAGCTGGGGATCTCCTCCCTGGGGCTaGACGGCCTCTGCTGAGGTGGCTCCTTGTAGAGGTATGTGGTTC | + |
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Preference number: 1 (lower is better) Translates to: VAEGPALSWGSPPWG*TASAEVAPCRGMWF Trigger: GAACCACATACCTCTACAAGGAGCCACCTCAGCAGAGGCCGTCCAGCCCCAGGGAGGAGATCCCCAGCTGAGCGCAGGACCCTCAGCCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR CCA 90 bp | TGGGTTCCAAGCCTCATTATGTCAGGCTGGCCCTGCACCTCCGGTTaGCTGGGTGGCCGCAGGGCGATGGCCCCCTGGGAAACTGTCTTC | + |
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Preference number: 1 (lower is better) Translates to: WVPSLIMSGWPCTSG*LGGRRAMAPWETVF Trigger: GAAGACAGTTTCCCAGGGGGCCATCGCCCTGCGGCCACCCAGCCAACCGGAGGTGCAGGGCCAGCCTGACATAATGAGGCTTGGAACCCA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR CCA 90 bp | AAGGTCCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTaGTTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGTTGGTGTCC | + |
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Preference number: 1 (lower is better) Translates to: KVPGWLVSRVLKVPG*LVSRVLKVPGWLVS Trigger: GGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAGCCAGCCAGGGACCTT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR CCA 90 bp | ACTGAAGGTCCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTaGCTGGTTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGTTGGT | + |
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Preference number: 1 (lower is better) Translates to: TEGPWLAGVPGTEGP*LVGVPGTEGPWLVG Trigger: ACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAGCCAGCCAGGGACCTTCAGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR TCA 90 bp | GAAGGTCCCTGGCTGGTTGGTGTCCCGGGTACTGAAGGTCCCTGGTaGGGTGGAGCAGAGGCAGCATACGCCTGTGAATCCGAAGGTGAG | + |
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Preference number: 1 (lower is better) Translates to: EGPWLVGVPGTEGPW*GGAEAAYACESEGE Trigger: CTCACCTTCGGATTCACAGGCGTATGCTGCCTCTGCTCCACCTCACCAGGGACCTTCAGTACCCGGGACACCAACCAGCCAGGGACCTTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR CCA 90 bp | AAGGTCACTGACTGGTTAGTGTTCCGGGTACTGAAGGTCCCTGGCTaGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGTTGGTGTCC | + |
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Preference number: 1 (lower is better) Translates to: KVTDWLVFRVLKVPG*LVSRVLKVPGWLVS Trigger: GGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAGCCAGCCAGGGACCTTCAGTACCCGGAACACTAACCAGTCAGTGACCTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR GCA 90 bp | AACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTaGCTCTGCCTCCCGAGTGCTGGAATTAAAGACGTGCACCACCAC | + |
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Preference number: 1 (lower is better) Translates to: NSLCRPGWPRTQKSA*LCLPSAGIKDVHHH Trigger: GTGGTGGTGCACGTCTTTAATTCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212433.2 |
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| 3UTR TCA 90 bp | GCAATCTGCTGTCCTCGTTGTGGGAAAATGGCGCCATGCCTAGCTTaGAAACTCAAGACCCAGCAACCACATGCACAGGAGCTGCTGCCA | + |
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Preference number: 1 (lower is better) Translates to: AICCPRCGKMAPCLA*KLKTQQPHAQELLP Trigger: TGGCAGCAGCTCCTGTGCATGTGGTTGCTGGGTCTTGAGTTTTCAAGCTAGGCATGGCGCCATTTTCCCACAACGAGGACAGCAGATTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR CCA 90 bp | CACTACTACATCTCCTCAGTGTGGGGCCAACCCAGGAGCTGTCTATaGTGGCCCATTTCCTCTCTTGCCTCAGCCAAAGTTGTCCCTCAA | + |
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Preference number: 1 (lower is better) Translates to: HYYISSVWGQPRSCL*WPISSLASAKVVPQ Trigger: TTGAGGGACAACTTTGGCTGAGGCAAGAGAGGAAATGGGCCACCATAGACAGCTCCTGGGTTGGCCCCACACTGAGGAGATGTAGTAGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR TCA 90 bp | GACTGCATGAACTTACTAGATGGCATGGTCCCTACTCAAGGTCACTaGCTGGTTAGTGTTCCGGGTACTGAAGGTCCCTGGCTGGCTGGT | + |
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Preference number: 1 (lower is better) Translates to: DCMNLLDGMVPTQGH*LVSVPGTEGPWLAG Trigger: ACCAGCCAGCCAGGGACCTTCAGTACCCGGAACACTAACCAGTCAGTGACCTTGAGTAGGGACCATGCCATCTAGTAAGTTCATGCAGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR CCA 90 bp | TACTACATCTCCTCAGTGTGGGGCCAACCCAGGAGCTGTCTATGGTaGCCCATTTCCTCTCTTGCCTCAGCCAAAGTTGTCCCTCAAAAG | + |
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Preference number: 1 (lower is better) Translates to: YYISSVWGQPRSCLW*PISSLASAKVVPQK Trigger: CTTTTGAGGGACAACTTTGGCTGAGGCAAGAGAGGAAATGGGCCACCATAGACAGCTCCTGGGTTGGCCCCACACTGAGGAGATGTAGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR TCA 90 bp | CTAGAAAGCTTCCCTAGTCTCCCAGGAAGTTGCTTAGTGCCGACATaGGTTGAAGTCCAGGGTTCTGACAGTCATGGCAGAGCAAGGTCA | + |
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Preference number: 1 (lower is better) Translates to: LESFPSLPGSCLVPT*VEVQGSDSHGRARS Trigger: TGACCTTGCTCTGCCATGACTGTCAGAACCCTGGACTTCAACTCATGTCGGCACTAAGCAACTTCCTGGGAGACTAGGGAAGCTTTCTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211829.2 |
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| 3UTR CAA 90 bp | GTCCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGTaGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGTTGGTGTCCCGG | + |
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Preference number: 2 (lower is better) Translates to: VPGWLVSRVLKVPGW*VSRVLKVPGWLVSR Trigger: CCGGGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAGCCAGCCAGGGAC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR CAA 90 bp | GTGGGTTCCAAGCCTCATTATGTCAGGCTGGCCCTGCACCTCCGGTaGGCTGGGTGGCCGCAGGGCGATGGCCCCCTGGGAAACTGTCTT | + |
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Preference number: 2 (lower is better) Translates to: VGSKPHYVRLALHLR*AGWPQGDGPLGNCL Trigger: AAGACAGTTTCCCAGGGGGCCATCGCCCTGCGGCCACCCAGCCAACCGGAGGTGCAGGGCCAGCCTGACATAATGAGGCTTGGAACCCAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR CAA 90 bp | GTCCCTGGCTGGTTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGTaGGTGTCCCGGGTACTGAAGGTCCCTGGTGAGGTGGAGCAGAGG | + |
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Preference number: 2 (lower is better) Translates to: VPGWLVSRVLKVPGW*VSRVLKVPGEVEQR Trigger: CCTCTGCTCCACCTCACCAGGGACCTTCAGTACCCGGGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAACCAGCCAGGGAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR-3UTR GCA 90 bp | GTCCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGTTGGTGTCCAACCCATGGGCCAGATaGAGGGGGAAGGGGGTGAAA | + |
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Preference number: 2 (lower is better) Translates to: VPGWLVSRVLKVPGWLVSNPWAR*RGKGVK Trigger: TTTCACCCCCTTCCCCCTGCATCTGGCCCATGGGTT...GGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAGCCAGCCAGGGAC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR-3UTR TCA 90 bp | GTCCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGTTGGTGTCCGCGCCATGCCTAGCTTaGAAACTCAAGACCCAGCAA | + |
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Preference number: 2 (lower is better) Translates to: VPGWLVSRVLKVPGWLVSAPCLA*KLKTQQ Trigger: TTGCTGGGTCTTGAGTTTTCAAGCTAGGCATGGCGC...GGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAGCCAGCCAGGGAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR-3UTR CCA 90 bp | CTGCACCTCCGGTTGGCTGGGTGGCCGCAGGGCGATGGCCCCCTGGGAAACTGTCCTTGTAGAGGTATGTaGTTCCTGAATTCCTGTGTC | + |
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Preference number: 2 (lower is better) Translates to: LHLRLAGWPQGDGPLGNCPCRGM*FLNSCV Trigger: GACACAGGAATTCAGGAACCACATACCTCTACAAGG...ACAGTTTCCCAGGGGGCCATCGCCCTGCGGCCACCCAGCCAACCGGAGGTGCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR-3UTR TCA 90 bp | TCTGCCTGCCTCTGCCTCCCGAGTGCTGGAATTAAAGACGTGCACCACCACGCCGGTATCCTGAATCCCTaGGAGCATCCCCCAAGCTTG | + |
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Preference number: 2 (lower is better) Translates to: SACLCLPSAGIKDVHHHAGILNP*EHPPSL Trigger: CAAGCTTGGGGGATGCTCTCAGGGATTCAGGATACC...GGCGTGGTGGTGCACGTCTTTAATTCCAGCACTCGGGAGGCAGAGGCAGGCAGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000212433.2 |
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| 3UTR-3UTR GCA 90 bp | GGTACTGAAGGTCCCTGGCTGGTTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGCCCATTTCCTCTCTTaGCTCAGCCAAAGTTGTCCC | + |
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Preference number: 2 (lower is better) Translates to: GTEGPWLVGVPGTEGPWLAHFLS*LSQSCP Trigger: GGGACAACTTTGGCTGAGGCAAGAGAGGAAATGGGC...CAGCCAGGGACCTTCAGTACCCGGGACACCAACCAGCCAGGGACCTTCAGTACC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR-3UTR CCA 90 bp | CCAGGAAGGACTTTCCACCCTAACCCATGGGCCAGATGCAGGGGGAAGGGGGTGTCCGGCAGCTATCCCTaGATTCACAGCTATACACCA | + |
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Preference number: 2 (lower is better) Translates to: PGRTFHPNPWARCRGKGVSGSYP*IHSYTP Trigger: TGGTGTATAGCTGTGAATCCAGGGATAGCTGCCGGA...CACCCCCTTCCCCCTGCATCTGGCCCATGGGTTAGGGTGGAAAGTCCTTCCTGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR-3UTR GCA 90 bp | GTCCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGTTGGTGTCCGTCTATAGGGCATGGTaGAAAATCCATGAAAGCAGA | + |
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Preference number: 2 (lower is better) Translates to: VPGWLVSRVLKVPGWLVSVYRAW*KIHESR Trigger: TCTGCTTTCATGGATTTTGCACCATGCCCTATAGAC...GGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAGCCAGCCAGGGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR-3UTR CCA 90 bp | GAAATCCTATATAAGCACTGCCCCTTTGTCCCAATCTGTGCTGCCCGCTCCGGCCGGCCTCTGCTGAGGTaGCTCCTTGTAGAGGTATGT | + |
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Preference number: 2 (lower is better) Translates to: EILYKHCPFVPICAARSGRPLLR*LLVEVC Trigger: ACATACCTCTACAAGGAGCCACCTCAGCAGAGGCCG...GCCGGAGCGGGCAGCACAGATTGGGACAAAGGGGCAGTGCTTATATAGGATTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR CAA 90 bp | GGAGCTGTCTATGGTGGCCCATTTCCTCTCTTGCCTCAGCCAAAGTaGTCCCTCAAAAGCCGTCTTTGGGGGCAGCACCACTTCTCTAGT | + |
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Preference number: 2 (lower is better) Translates to: GAVYGGPFPLLPQPK*SLKSRLWGQHHFSS Trigger: ACTAGAGAAGTGGTGCTGCCCCCAAAGACGGCTTTTGAGGGACAACTTTGGCTGAGGCAAGAGAGGAAATGGGCCACCATAGACAGCTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR CAA 90 bp | AGCAATCTGCTGTCCTCGTTGTGGGAAAATGGCGCCATGCCTAGCTaGAAAACTCAAGACCCAGCAACCACATGCACAGGAGCTGCTGCC | + |
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Preference number: 2 (lower is better) Translates to: SNLLSSLWENGAMPS*KTQDPATTCTGAAA Trigger: GGCAGCAGCTCCTGTGCATGTGGTTGCTGGGTCTTGAGTTTTCAAGCTAGGCATGGCGCCATTTTCCCACAACGAGGACAGCAGATTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR-3UTR GCA 90 bp | CCTCTGACCCCAGCAGTTCCACAGAGATGTCATCTCAGCGCAAGCCAGCTCAGGTGTCCAGAGAAGCTCTaGCCCCTCAGAAATCCTATA | + |
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Preference number: 2 (lower is better) Translates to: PLTPAVPQRCHLSASQLRCPEKL*PLRNPI Trigger: TATAGGATTTCTGAGGGGGCAGAGCTTCTCTGGACA...CCTGAGCTGGCTTGCGCTGAGATGACATCTCTGTGGAACTGCTGGGGTCAGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR-3UTR TCA 90 bp | CCAAAGTTGTCCCTCAAAAGCCGTCTTTGGGGGCAGCACCACTTCTCTAGTACCATTTTCTTCTTGGTGTaGCACTCTCCTTGGAGGAGC | + |
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Preference number: 2 (lower is better) Translates to: PKLSLKSRLWGQHHFSSTIFFLV*HSPWRS Trigger: GCTCCTCCAAGGAGAGTGTCACACCAAGAAGAAAAT...GGTACTAGAGAAGTGGTGCTGCCCCCAAAGACGGCTTTTGAGGGACAACTTTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR-3UTR TCA 90 bp | AAACTCAAGACCCAGCAACCACATGCACAGGAGCTGCTGCCAGCCAACCCAGAGAAACCTATCAATTCTTaGGTACCCCAAGCTCATGAC | + |
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Preference number: 2 (lower is better) Translates to: KLKTQQPHAQELLPANPEKPINS*VPQAHD Trigger: GTCATGAGCTTGGGGTACTCAAGAATTGATAGGTTT...CTCTGGGTTGGCTGGCAGCAGCTCCTGTGCATGTGGTTGCTGGGTCTTGAGTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR-3UTR TCA 90 bp | GAAGCTCTGCCCCCTCAGAAATCCTATATAAGCACTGCCCCTTTGTCCCAATCTGAGGTATGTGGTTCCTaGATTCCTGTGTCTCAGGAT | + |
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Preference number: 2 (lower is better) Translates to: EALPPQKSYISTAPLSQSEVCGS*IPVSQD Trigger: ATCCTGAGACACAGGAATTCAGGAACCACATACCTC...AGATTGGGACAAAGGGGCAGTGCTTATATAGGATTTCTGAGGGGGCAGAGCTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR CAA 90 bp | ATGGCAGAGCAAGGTCAGTTCTATGTGGCCCTTGCCCTCCAAGGATaGTCTTTGTTGAGGTTTCTGGTATTAGAGCCAACACAGACACAA | + |
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Preference number: 2 (lower is better) Translates to: MAEQGQFYVALALQG*SLLRFLVLEPTQTQ Trigger: TTGTGTCTGTGTTGGCTCTAATACCAGAAACCTCAACAAAGACAATCCTTGGAGGGCAAGGGCCACATAGAACTGACCTTGCTCTGCCAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211829.2 |
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| 3UTR-3UTR CCA 90 bp | TGGCACATAAGGGCACAGTCGGCAATAGTACATGTTACTGTCAGGAAACCAAACAAGGTCAGTTCTATGTaGCCCTTGCCCTCCAAGGAT | + |
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Preference number: 2 (lower is better) Translates to: WHIRAQSAIVHVTVRKPNKVSSM*PLPSKD Trigger: ATCCTTGGAGGGCAAGGGCCACATAGAACTGACCTT...GTTTGGTTTCCTGACAGTAACATGTACTATTGCCGACTGTGCCCTTATGTGCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211829.2 |
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| 3UTR-3UTR GCA 90 bp | TGGCACATAAGGGCACAGTCGGCAATAGTACATGTTACTGTCAGGAAACCAAACGTTCTATGTGGCCCTTaGCCTCCAAGGATTGTCTTT | + |
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Preference number: 2 (lower is better) Translates to: WHIRAQSAIVHVTVRKPNVLCGP*PPRIVF Trigger: AAAGACAATCCTTGGAGGGCAAGGGCCACATAGAAC...GTTTGGTTTCCTGACAGTAACATGTACTATTGCCGACTGTGCCCTTATGTGCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211829.2 |
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| 3UTR-3UTR TCA 90 bp | GATGATTTCCATTTGTCTGTTTTGACAGCTGTGGTAGCCACTGGAACAGTTGATGGAGATCCAAGTAGTTaGCTAAGGTGTCTTCCTAAG | + |
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Preference number: 2 (lower is better) Translates to: DDFHLSVLTAVVATGTVDGDPSS*LRCLPK Trigger: CTTAGGAAGACACCTTAGTCAACTACTTGGATCTCC...ATCAACTGTTCCAGTGGCTACCACAGCTGTCAAAACAGACAAATGGAAATCATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212433.2 |
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| 3UTR-3UTR CAA 90 bp | CGGGTACTGAAGGTCCCTGGCTGGTTGGTGTCCCGGGTACTGAAGGTCCCTGGTGCCCTGCACCTCCGGTaGGCTGGGTGGCCGCAGGGC | + |
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Preference number: 3 (lower is better) Translates to: RVLKVPGWLVSRVLKVPGALHLR*AGWPQG Trigger: GCCCTGCGGCCACCCAGCCAACCGGAGGTGCAGGGC...ACCAGGGACCTTCAGTACCCGGGACACCAACCAGCCAGGGACCTTCAGTACCCG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR CCA 72 bp | CCTGCACCTCCGGTTGGCTGGGTGGCCGCAGGGCGATaGCCCCCTGGGAAACTGTCTTCAACGGCTGCTGGC | + |
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Preference number: 3 (lower is better) Translates to: PAPPVGWVAAGR*PPGKLSSTAAG Trigger: GCCAGCAGCCGTTGAAGACAGTTTCCCAGGGGGCCATCGCCCTGCGGCCACCCAGCCAACCGGAGGTGCAGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR CCA 72 bp | AGCCTCATTATGTCAGGCTGGCCCTGCACCTCCGGTTaGCTGGGTGGCCGCAGGGCGATGGCCCCCTGGGAA | + |
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Preference number: 3 (lower is better) Translates to: SLIMSGWPCTSG*LGGRRAMAPWE Trigger: TTCCCAGGGGGCCATCGCCCTGCGGCCACCCAGCCAACCGGAGGTGCAGGGCCAGCCTGACATAATGAGGCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR CCA 72 bp | GGTCCTGCGCTCAGCTGGGGATCTCCTCCCTGGGGCTaGACGGCCTCTGCTGAGGTGGCTCCTTGTAGAGGT | + |
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Preference number: 3 (lower is better) Translates to: GPALSWGSPPWG*TASAEVAPCRG Trigger: ACCTCTACAAGGAGCCACCTCAGCAGAGGCCGTCCAGCCCCAGGGAGGAGATCCCCAGCTGAGCGCAGGACC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR CCA 72 bp | TATGTCAGGCTGGCCCTGCACCTCCGGTTGGCTGGGTaGCCGCAGGGCGATGGCCCCCTGGGAAACTGTCTT | + |
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Preference number: 3 (lower is better) Translates to: YVRLALHLRLAG*PQGDGPLGNCL Trigger: AAGACAGTTTCCCAGGGGGCCATCGCCCTGCGGCCACCCAGCCAACCGGAGGTGCAGGGCCAGCCTGACATA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR CCA 72 bp | GGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTaGTTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGG | + |
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Preference number: 3 (lower is better) Translates to: GWLVSRVLKVPG*LVSRVLKVPGW Trigger: CCAGCCAGGGACCTTCAGTACCCGGGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAGCCAGCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR CCA 72 bp | CCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTaGCTGGTTGGTGTCCCGGGTACTGAAGGTCCCTGG | + |
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Preference number: 3 (lower is better) Translates to: PWLAGVPGTEGP*LVGVPGTEGPW Trigger: CCAGGGACCTTCAGTACCCGGGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAGCCAGCCAGGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR CCA 72 bp | TCCGGTTGGCTGGGTGGCCGCAGGGCGATGGCCCCCTaGGAAACTGTCTTCAACGGCTGCTGGCAGTCTATC | + |
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Preference number: 3 (lower is better) Translates to: SGWLGGRRAMAP*ETVFNGCWQSI Trigger: GATAGACTGCCAGCAGCCGTTGAAGACAGTTTCCCAGGGGGCCATCGCCCTGCGGCCACCCAGCCAACCGGA 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR CCA 72 bp | GGCTGGTTGGTGTCCCGGGTACTGAAGGTCCCTGGCTaGTTGGTGTCCCGGGTACTGAAGGTCCCTGGTGAG | + |
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Preference number: 3 (lower is better) Translates to: GWLVSRVLKVPG*LVSRVLKVPGE Trigger: CTCACCAGGGACCTTCAGTACCCGGGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAACCAGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR CCA 72 bp | GATTCATGGTGGGTTCCAAGCCTCATTATGTCAGGCTaGCCCTGCACCTCCGGTTGGCTGGGTGGCCGCAGG | + |
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Preference number: 3 (lower is better) Translates to: DSWWVPSLIMSG*PCTSGWLGGRR Trigger: CCTGCGGCCACCCAGCCAACCGGAGGTGCAGGGCCAGCCTGACATAATGAGGCTTGGAACCCACCATGAATC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR CCA 72 bp | GACTGGTTAGTGTTCCGGGTACTGAAGGTCCCTGGCTaGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGG | + |
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Preference number: 3 (lower is better) Translates to: DWLVFRVLKVPG*LVSRVLKVPGW Trigger: CCAGCCAGGGACCTTCAGTACCCGGGACACCAGCCAGCCAGGGACCTTCAGTACCCGGAACACTAACCAGTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| 3UTR TCA 72 bp | CTGGAACAGTTGATGGTGCAAGCGTCCTCGATGGTGTaGGTGGGTCTCTTGACTCGTGTGCCTGCTCTTGGG | + |
|
Preference number: 3 (lower is better) Translates to: LEQLMVQASSMV*VGLLTRVPALG Trigger: CCCAAGAGCAGGCACACGAGTCAAGAGACCCACTCACACCATCGAGGACGCTTGCACCATCAACTGTTCCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000212433.2 ENSMUST00000212939.2 |
||
| 3UTR CCA 72 bp | TCCTCAGTGTGGGGCCAACCCAGGAGCTGTCTATGGTaGCCCATTTCCTCTCTTGCCTCAGCCAAAGTTGTC | + |
|
Preference number: 3 (lower is better) Translates to: SSVWGQPRSCLW*PISSLASAKVV Trigger: GACAACTTTGGCTGAGGCAAGAGAGGAAATGGGCCACCATAGACAGCTCCTGGGTTGGCCCCACACTGAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
||
| 3UTR GCA 72 bp | TGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTaGCTCTGCCTCCCGAGTGCTGGAATTAAAGACGTG | + |
|
Preference number: 3 (lower is better) Translates to: CRPGWPRTQKSA*LCLPSAGIKDV Trigger: CACGTCTTTAATTCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212433.2 |
||
| 3UTR CCA 72 bp | ATCTCCTCAGTGTGGGGCCAACCCAGGAGCTGTCTATaGTGGCCCATTTCCTCTCTTGCCTCAGCCAAAGTT | + |
|
Preference number: 3 (lower is better) Translates to: ISSVWGQPRSCL*WPISSLASAKV Trigger: AACTTTGGCTGAGGCAAGAGAGGAAATGGGCCACCATAGACAGCTCCTGGGTTGGCCCCACACTGAGGAGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
||
| 3UTR GCA 72 bp | CTCGATGGTGTGAGTGGGTCTCTTGACTCGTGTGCCTaGTCTTGGGACTCTTTTCCTCCCGTTGAGTTGTCA | + |
|
Preference number: 3 (lower is better) Translates to: LDGVSGSLDSCA*SWDSFPPVELS Trigger: TGACAACTCAACGGGAGGAAAAGAGTCCCAAGAGCAGGCACACGAGTCAAGAGACCCACTCACACCATCGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000212433.2 ENSMUST00000212939.2 |
||
| 3UTR CCA 72 bp | ACGGCCTCTGCTGAGGTGGCTCCTTGTAGAGGTATGTaGTTCCTGAATTCCTGTGTCTCAGGATGCCTTTCC | + |
|
Preference number: 3 (lower is better) Translates to: TASAEVAPCRGM*FLNSCVSGCLS Trigger: GGAAAGGCATCCTGAGACACAGGAATTCAGGAACCACATACCTCTACAAGGAGCCACCTCAGCAGAGGCCGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
||
| 3UTR CCA 72 bp | GGTGTGAGTGGGTCTCTTGACTCGTGTGCCTGCTCTTaGGACTCTTTTCCTCCCGTTGAGTTGTCATGTCCA | + |
|
Preference number: 3 (lower is better) Translates to: GVSGSLDSCACS*DSFPPVELSCP Trigger: TGGACATGACAACTCAACGGGAGGAAAAGAGTCCCAAGAGCAGGCACACGAGTCAAGAGACCCACTCACACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000212433.2 ENSMUST00000212939.2 |
||
| 3UTR TCA 72 bp | TGTCCTCGTTGTGGGAAAATGGCGCCATGCCTAGCTTaGAAACTCAAGACCCAGCAACCACATGCACAGGAG | + |
|
Preference number: 3 (lower is better) Translates to: CPRCGKMAPCLA*KLKTQQPHAQE Trigger: CTCCTGTGCATGTGGTTGCTGGGTCTTGAGTTTTCAAGCTAGGCATGGCGCCATTTTCCCACAACGAGGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
||
| 3UTR GCA 72 bp | ACCCAGGAGCTGTCTATGGTGGCCCATTTCCTCTCTTaGCTCAGCCAAAGTTGTCCCTCAAAAGCCGTCTTT | + |
|
Preference number: 3 (lower is better) Translates to: TQELSMVAHFLS*LSQSCPSKAVF Trigger: AAAGACGGCTTTTGAGGGACAACTTTGGCTGAGGCAAGAGAGGAAATGGGCCACCATAGACAGCTCCTGGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
||
| 3UTR-3UTR CAA 90 bp | TTGACAGCTGTGGTAGCCACTGGAACAGTTGATGGTGCAAGCGTCCTCGATGGTTCCCCCAAGCTTGGATaGATTAGCAGTGAGCAGAGA | + |
|
Preference number: 3 (lower is better) Translates to: LTAVVATGTVDGASVLDGSPKLG*ISSEQR Trigger: TCTCTGCTCACTGCTAATCAATCCAAGCTTGGGGGA...ACCATCGAGGACGCTTGCACCATCAACTGTTCCAGTGGCTACCACAGCTGTCAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000212433.2 |
||
| 3UTR-3UTR CAA 90 bp | TCACCCGATGATTTCCATTTGTCTGTTTTGACAGCTGTGGTAGCCACTGGAACACTCGTGTGCCTGCTCTaGGGACTCTTTTCCTCCCGT | + |
|
Preference number: 3 (lower is better) Translates to: SPDDFHLSVLTAVVATGTLVCLL*GLFSSR Trigger: ACGGGAGGAAAAGAGTCCCAAGAGCAGGCACACGAG...TGTTCCAGTGGCTACCACAGCTGTCAAAACAGACAAATGGAAATCATCGGGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000212433.2 ENSMUST00000212939.2 |
||
| 3UTR TCA 72 bp | TTCCCTAGTCTCCCAGGAAGTTGCTTAGTGCCGACATaGGTTGAAGTCCAGGGTTCTGACAGTCATGGCAGA | + |
|
Preference number: 3 (lower is better) Translates to: FPSLPGSCLVPT*VEVQGSDSHGR Trigger: TCTGCCATGACTGTCAGAACCCTGGACTTCAACTCATGTCGGCACTAAGCAACTTCCTGGGAGACTAGGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211829.2 |
||
| 3UTR GCA 72 bp | AAGCAGAGGCCATTCCACATCCCAGTCTACGACCACTaGAGTAAAACACCCCACAAGAGATGTCCAAATGTG | + |
|
Preference number: 3 (lower is better) Translates to: KQRPFHIPVYDH*SKTPHKRCPNV Trigger: CACATTTGGACATCTCTTGTGGGGTGTTTTACTGCAGTGGTCGTAGACTGGGATGTGGAATGGCCTCTGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
||
| 3UTR GCA 72 bp | CCTGCCTCTGCCTCCCGAGTGCTGGAATTAAAGACGTaGACCACCACGCCCGGCTTATTTTTAATAAAAGAA | + |
|
Preference number: 3 (lower is better) Translates to: PASASRVLELKT*TTTPGLFLIKE Trigger: TTCTTTTATTAAAAATAAGCCGGGCGTGGTGGTGCACGTCTTTAATTCCAGCACTCGGGAGGCAGAGGCAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000212433.2 |
||
| 3UTR TCA 72 bp | AATCTCTTGCTGAAGGGCCACCTAGACCTCACCCGATaGTTTCCATTTGTCTGTTTTGACAGCTGTGGTAGC | + |
|
Preference number: 3 (lower is better) Translates to: NLLLKGHLDLTR*FPFVCFDSCGS Trigger: GCTACCACAGCTGTCAAAACAGACAAATGGAAATCATCGGGTGAGGTCTAGGTGGCCCTTCAGCAAGAGATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000212433.2 ENSMUST00000212939.2 |
||
| 3UTR-3UTR CAA 90 bp | CACATAAGGGCACAGTCGGCAATAGTACATGTTACTGTCAGGAAACCAAACACCCTTGCCCTCCAAGGATaGTCTTTGTTGAGGTTTCTG | + |
|
Preference number: 3 (lower is better) Translates to: HIRAQSAIVHVTVRKPNTLALQG*SLLRFL Trigger: CAGAAACCTCAACAAAGACAATCCTTGGAGGGCAAG...GGTGTTTGGTTTCCTGACAGTAACATGTACTATTGCCGACTGTGCCCTTATGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211829.2 |
||
| 3UTR CCA 72 bp | GGGTTATTTGGGGGTATGTATAGTGTCTATAGGGCATaGTGCAAAATCCATGAAAGCAGAGGCCATTCCACA | + |
|
Preference number: 3 (lower is better) Translates to: GLFGGMYSVYRA*CKIHESRGHST Trigger: TGTGGAATGGCCTCTGCTTTCATGGATTTTGCACCATGCCCTATAGACACTATACATACCCCCAAATAACCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
||
| 3UTR-3UTR CAA 90 bp | GTCAGGAAACCAAACACCTCCTATCTAGAAAGCTTCCCTAGTCTCCCAGGAAGTCTCCAAGGATTGTCTTaGTTGAGGTTTCTGGTATTA | + |
|
Preference number: 3 (lower is better) Translates to: VRKPNTSYLESFPSLPGSLQGLS*LRFLVL Trigger: TAATACCAGAAACCTCAACAAAGACAATCCTTGGAG...ACTTCCTGGGAGACTAGGGAAGCTTTCTAGATAGGAGGTGTTTGGTTTCCTGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211829.2 |
||
| 3UTR-3UTR CAA 90 bp | GCAATAGTACATGTTACTGTCAGGAAACCAAACACCTCCTATCTAGAAAGCTTCAGTTCTATGTGGCCCTaGCCCTCCAAGGATTGTCTT | + |
|
Preference number: 3 (lower is better) Translates to: AIVHVTVRKPNTSYLESFSSMWP*PSKDCL Trigger: AAGACAATCCTTGGAGGGCAAGGGCCACATAGAACT...GAAGCTTTCTAGATAGGAGGTGTTTGGTTTCCTGACAGTAACATGTACTATTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211829.2 |
||
| 3UTR GCA 72 bp | TTATTTGGGGGTATGTATAGTGTCTATAGGGCATGGTaGAAAATCCATGAAAGCAGAGGCCATTCCACATCC | + |
|
Preference number: 3 (lower is better) Translates to: LFGGMYSVYRAW*KIHESRGHSTS Trigger: GGATGTGGAATGGCCTCTGCTTTCATGGATTTTGCACCATGCCCTATAGACACTATACATACCCCCAAATAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
||
| 3UTR-3UTR CAA 90 bp | TTCTGGCACATAAGGGCACAGTCGGCAATAGTACATGTTACTGTCAGGAAACCACAAGGATTGTCTTTGTaGAGGTTTCTGGTATTAGAG | + |
|
Preference number: 3 (lower is better) Translates to: FWHIRAQSAIVHVTVRKPQGLSL*RFLVLE Trigger: CTCTAATACCAGAAACCTCAACAAAGACAATCCTTG...TGGTTTCCTGACAGTAACATGTACTATTGCCGACTGTGCCCTTATGTGCCAGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211829.2 |
||
| 3UTR TCA 72 bp | CAAACAATAAAGAGAATTTATGTTCTGTGGGTATCCTaGATCCCTGAGAGCATCCCCCAAGCTTGGATTGAT | + |
|
Preference number: 3 (lower is better) Translates to: QTIKRIYVLWVS*IPESIPQAWID Trigger: ATCAATCCAAGCTTGGGGGATGCTCTCAGGGATTCAGGATACCCACAGAACATAAATTCTCTTTATTGTTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000212433.2 |
||
| 3UTR CAA 72 bp | TGGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGTaGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGTTG | + |
|
Preference number: 4 (lower is better) Translates to: WLVSRVLKVPGW*VSRVLKVPGWL Trigger: CAACCAGCCAGGGACCTTCAGTACCCGGGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAGCCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
||
| 3UTR CAA 72 bp | TGGTTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGTaGGTGTCCCGGGTACTGAAGGTCCCTGGTGAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: WLVSRVLKVPGW*VSRVLKVPGEV Trigger: CACCTCACCAGGGACCTTCAGTACCCGGGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAACCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
||
| 3UTR CAA 72 bp | TATGGTGGCCCATTTCCTCTCTTGCCTCAGCCAAAGTaGTCCCTCAAAAGCCGTCTTTGGGGGCAGCACCAC | + |
|
Preference number: 4 (lower is better) Translates to: YGGPFPLLPQPK*SLKSRLWGQHH Trigger: GTGGTGCTGCCCCCAAAGACGGCTTTTGAGGGACAACTTTGGCTGAGGCAAGAGAGGAAATGGGCCACCATA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
||
| 3UTR CAA 72 bp | CTGTCCTCGTTGTGGGAAAATGGCGCCATGCCTAGCTaGAAAACTCAAGACCCAGCAACCACATGCACAGGA | + |
|
Preference number: 4 (lower is better) Translates to: LSSLWENGAMPS*KTQDPATTCTG Trigger: TCCTGTGCATGTGGTTGCTGGGTCTTGAGTTTTCAAGCTAGGCATGGCGCCATTTTCCCACAACGAGGACAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
||
| CDS-3UTR CCA 90 bp | GTGAGTGGGTCTCTTGACTCGTGTGCCTGCTCTTGGGACTCTTTTCCTCCCGTTAGTGATGACGATATATaGTTCAGGGGCTTGTCCCAC | + |
|
Preference number: 4 (lower is better) Translates to: VSGSLDSCACSWDSFPPVSDDDI*FRGLSH Trigger: GTGGGACAAGCCCCTGAACCATATATCGTCATCACT...AACGGGAGGAAAAGAGTCCCAAGAGCAGGCACACGAGTCAAGAGACCCACTCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000212433.2 ENSMUST00000212939.2 |
||
| CDS-3UTR CCA 90 bp | TCTACGACCACTGCAGTAAAACACCCCACAAGAGATGTCCAAATGTGCCTGGGGAGTGATGACGATATATaGTTCAGGGGCTTGTCCCAC | + |
|
Preference number: 4 (lower is better) Translates to: STTTAVKHPTRDVQMCLGSDDDI*FRGLSH Trigger: GTGGGACAAGCCCCTGAACCATATATCGTCATCACT...CCCCAGGCACATTTGGACATCTCTTGTGGGGTGTTTTACTGCAGTGGTCGTAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
||
| CDS-3UTR CCA 90 bp | CAATCTCTTGCTGAAGGGCCACCTAGACCTCACCCGATGATTTCCATTTGTCTGAGTGATGACGATATATaGTTCAGGGGCTTGTCCCAC | + |
|
Preference number: 4 (lower is better) Translates to: QSLAEGPPRPHPMISICLSDDDI*FRGLSH Trigger: GTGGGACAAGCCCCTGAACCATATATCGTCATCACT...CAGACAAATGGAAATCATCGGGTGAGGTCTAGGTGGCCCTTCAGCAAGAGATTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000212433.2 ENSMUST00000212939.2 |
||
| CDS-3UTR CCA 90 bp | ATAAGGGCACAGTCGGCAATAGTACATGTTACTGTCAGGAAACCAAACACCTCCAAGGTCAGTTCTATGTaGCCCTTGCCCTCCAAGGAT | + |
|
Preference number: 4 (lower is better) Translates to: IRAQSAIVHVTVRKPNTSKVSSM*PLPSKD Trigger: ATCCTTGGAGGGCAAGGGCCACATAGAACTGACCTT...GGAGGTGTTTGGTTTCCTGACAGTAACATGTACTATTGCCGACTGTGCCCTTAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212410.2 |
||
| CDS-3UTR CCA 90 bp | GCACATAAGGGCACAGTCGGCAATAGTACATGTTACTGTCAGGAAACCAAACACAGTGATGACGATATATaGTTCAGGGGCTTGTCCCAC | + |
|
Preference number: 4 (lower is better) Translates to: AHKGTVGNSTCYCQETKHSDDDI*FRGLSH Trigger: GTGGGACAAGCCCCTGAACCATATATCGTCATCACT...GTGTTTGGTTTCCTGACAGTAACATGTACTATTGCCGACTGTGCCCTTATGTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212410.2 |
||
| 3UTR CAA 72 bp | CAAGGTCAGTTCTATGTGGCCCTTGCCCTCCAAGGATaGTCTTTGTTGAGGTTTCTGGTATTAGAGCCAACA | + |
|
Preference number: 4 (lower is better) Translates to: QGQFYVALALQG*SLLRFLVLEPT Trigger: TGTTGGCTCTAATACCAGAAACCTCAACAAAGACAATCCTTGGAGGGCAAGGGCCACATAGAACTGACCTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211829.2 |
||
| CDS-3UTR TCA 90 bp | GCAATAGTACATGTTACTGTCAGGAAACCAAACACCTCCTATCTAGAAAGCTTCAGCATGCTCCTGGTTTaGGAACAGCTCCGAAGTCTC | + |
|
Preference number: 4 (lower is better) Translates to: AIVHVTVRKPNTSYLESFSMLLV*EQLRSL Trigger: GAGACTTCGGAGCTGTTCTCAAACCAGGAGCATGCT...GAAGCTTTCTAGATAGGAGGTGTTTGGTTTCCTGACAGTAACATGTACTATTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211829.2 |
||
| 3UTR CAA 72 bp | TTCTATGTGGCCCTTGCCCTCCAAGGATTGTCTTTGTaGAGGTTTCTGGTATTAGAGCCAACACAGACACAA | + |
|
Preference number: 4 (lower is better) Translates to: FYVALALQGLSL*RFLVLEPTQTQ Trigger: TTGTGTCTGTGTTGGCTCTAATACCAGAAACCTCAACAAAGACAATCCTTGGAGGGCAAGGGCCACATAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211829.2 |
||
| CDS-3UTR GCA 90 bp | AGTAGACTTTTTCTGATAAGGTTGACGTGGACGAAACCGAAGTTTCTGGCACATGTTCTATGTGGCCCTTaGCCTCCAAGGATTGTCTTT | + |
|
Preference number: 4 (lower is better) Translates to: SRLFLIRLTWTKPKFLAHVLCGP*PPRIVF Trigger: AAAGACAATCCTTGGAGGGCAAGGGCCACATAGAAC...ATGTGCCAGAAACTTCGGTTTCGTCCACGTCAACCTTATCAGAAAAAGTCTACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000212410.2 |
||
| CDS-3UTR CCA 90 bp | ATAAGGGCACAGTCGGCAATAGTACATGTTACTGTCAGGAAACCAAACACCTCCTTAAAAGCATGCTCCTaGTTTGAGAACAGCTCCGAA | + |
|
Preference number: 4 (lower is better) Translates to: IRAQSAIVHVTVRKPNTSLKACS*FENSSE Trigger: TTCGGAGCTGTTCTCAAACCAGGAGCATGCTTTTAA...GGAGGTGTTTGGTTTCCTGACAGTAACATGTACTATTGCCGACTGTGCCCTTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211829.2 |
||
| CDS-3UTR TCA 90 bp | GTTGAGGTTTCTGGTATTAGAGCCAACACAGACACAATGAGCATGCATAATGCTATCACTTGCTTCCAATaGTGGTTCCAGAAGGTACCA | + |
|
Preference number: 4 (lower is better) Translates to: VEVSGIRANTDTMSMHNAITCFQ*WFQKVP Trigger: TGGTACCTTCTGGAACCATCATTGGAAGCAAGTGAT...AGCATTATGCATGCTCATTGTGTCTGTGTTGGCTCTAATACCAGAAACCTCAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211829.2 |
||
| CDS-3UTR GCA 90 bp | GCACATAAGGGCACAGTCGGCAATAGTACATGTTACTGTCAGGAAACCAAACACTACCATTTAAAAGCATaGTCCTGGTTTGAGAACAGC | + |
|
Preference number: 4 (lower is better) Translates to: AHKGTVGNSTCYCQETKHYHLKA*SWFENS Trigger: GCTGTTCTCAAACCAGGAGCATGCTTTTAAATGGTA...GTGTTTGGTTTCCTGACAGTAACATGTACTATTGCCGACTGTGCCCTTATGTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211829.2 |
||
| 3UTR CAA 72 bp | GTCATCGATGTCATTAGTAGACTTTTTCTGATAAGGTaGACGTGGACGAAACCGAAGTTTCTGGCACATAAG | + |
|
Preference number: 4 (lower is better) Translates to: VIDVISRLFLIR*TWTKPKFLAHK Trigger: CTTATGTGCCAGAAACTTCGGTTTCGTCCACGTCAACCTTATCAGAAAAAGTCTACTAATGACATCGATGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000211829.2 ENSMUST00000212410.2 |
||
| CDS-3UTR CAA 90 bp | TTCTGGCACATAAGGGCACAGTCGGCAATAGTACATGTTACTGTCAGGAAACCAAGTTCTATGTGGCCCTaGCCCTCCAAGGATTGTCTT | + |
|
Preference number: 5 (lower is better) Translates to: FWHIRAQSAIVHVTVRKPSSMWP*PSKDCL Trigger: AAGACAATCCTTGGAGGGCAAGGGCCACATAGAACT...TGGTTTCCTGACAGTAACATGTACTATTGCCGACTGTGCCCTTATGTGCCAGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212410.2 |
||
| CDS-3UTR CAA 90 bp | AATAGTACATGTTACTGTCAGGAAACCAAACACCTCCTATCTAGAAAGCTTCCCAAGCATGCTCCTGGTTaGAGAACAGCTCCGAAGTCT | + |
|
Preference number: 5 (lower is better) Translates to: NSTCYCQETKHLLSRKLPKHAPG*RTAPKS Trigger: AGACTTCGGAGCTGTTCTCAAACCAGGAGCATGCTT...GGGAAGCTTTCTAGATAGGAGGTGTTTGGTTTCCTGACAGTAACATGTACTATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211829.2 |
||
| CDS-3UTR CAA 90 bp | GTCGGCAATAGTACATGTTACTGTCAGGAAACCAAACACCTCCTATCTAGAAAGCAAGGATTGTCTTTGTaGAGGTTTCTGGTATTAGAG | + |
|
Preference number: 5 (lower is better) Translates to: VGNSTCYCQETKHLLSRKQGLSL*RFLVLE Trigger: CTCTAATACCAGAAACCTCAACAAAGACAATCCTTG...CTTTCTAGATAGGAGGTGTTTGGTTTCCTGACAGTAACATGTACTATTGCCGAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212410.2 |
||
| CDS-3UTR CAA 90 bp | GTCATCGATGTCATTAGTAGACTTTTTCTGATAAGGTTGACGTGGACGAAACCGCTCCAAGGATTGTCTTaGTTGAGGTTTCTGGTATTA | + |
|
Preference number: 5 (lower is better) Translates to: VIDVISRLFLIRLTWTKPLQGLS*LRFLVL Trigger: TAATACCAGAAACCTCAACAAAGACAATCCTTGGAG...CGGTTTCGTCCACGTCAACCTTATCAGAAAAAGTCTACTAATGACATCGATGAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000212410.2 |
||
| CDS TCA 72 bp | ATCCTCCAGCCTGAAACGCTCATCACTTGCTTCCAATaGTGGTTCCAGAAGGTACCATTTAAAAGCATGCTC | + |
|
Preference number: 6 (lower is better) Translates to: ILQPETLITCFQ*WFQKVPFKSML Trigger: GAGCATGCTTTTAAATGGTACCTTCTGGAACCATCATTGGAAGCAAGTGATGAGCGTTTCAGGCTGGAGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211829.2 |
||
| CDS GCA 72 bp | TCCAATGATGGTTCCAGAAGGTACCATTTAAAAGCATaGTCCTGGTTTGAGAACAGCTCCGAAGTCTCCTCT | + |
|
Preference number: 6 (lower is better) Translates to: SNDGSRRYHLKA*SWFENSSEVSS Trigger: AGAGGAGACTTCGGAGCTGTTCTCAAACCAGGAGCATGCTTTTAAATGGTACCTTCTGGAACCATCATTGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211829.2 |
||
| CDS CAA 90 bp | AACGGTGACTTCAAACCCAGTGATGACGATATATGGTTCAGGGGCTaGTCCCACGATGAAAAAGATCATAGATGTCACAGTTACCACCAA | + |
|
Preference number: 6 (lower is better) Translates to: NGDFKPSDDDIWFRG*SHDEKDHRCHSYHQ Trigger: TTGGTGGTAACTGTGACATCTATGATCTTTTTCATCGTGGGACAAGCCCCTGAACCATATATCGTCATCACTGGGTTTGAAGTCACCGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENSMUST00000034342.13 ENSMUST00000098464.6 ENSMUST00000211809.2 ENSMUST00000212410.2 ENSMUST00000212433.2 ENSMUST00000212939.2 |
||
| CDS CAA 72 bp | TCAGGAAACCAAACACCCCTCCAAGGATTGTCTTTGTaGAGGTTTCTGGTATTAGAGCCAACACAGACACAA | + |
|
Preference number: 6 (lower is better) Translates to: SGNQTPLQGLSL*RFLVLEPTQTQ Trigger: TTGTGTCTGTGTTGGCTCTAATACCAGAAACCTCAACAAAGACAATCCTTGGAGGGGTGTTTGGTTTCCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034342.13 |
||
| CDS CCA 72 bp | AATAACGGTGACTTCAAACCCAGTGATGACGATATATaGTTCAGGGGCTTGTCCCACGATGAAAAAGATCAT | + |
|
Preference number: 6 (lower is better) Translates to: NNGDFKPSDDDI*FRGLSHDEKDH Trigger: ATGATCTTTTTCATCGTGGGACAAGCCCCTGAACCATATATCGTCATCACTGGGTTTGAAGTCACCGTTATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENSMUST00000034342.13 ENSMUST00000098464.6 ENSMUST00000211809.2 ENSMUST00000212410.2 ENSMUST00000212433.2 ENSMUST00000212939.2 |
||
| CDS CAA 72 bp | TTCAAACCCAGTGATGACGATATATGGTTCAGGGGCTaGTCCCACGATGAAAAAGATCATAGATGTCACAGT | + |
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Preference number: 6 (lower is better) Translates to: FKPSDDDIWFRG*SHDEKDHRCHS Trigger: ACTGTGACATCTATGATCTTTTTCATCGTGGGACAAGCCCCTGAACCATATATCGTCATCACTGGGTTTGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENSMUST00000034342.13 ENSMUST00000098464.6 ENSMUST00000211809.2 ENSMUST00000212410.2 ENSMUST00000212433.2 ENSMUST00000212939.2 |
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| CDS CAA 72 bp | ACATCAAGCAAAGGCCAAAAGAAAGATCTCATTATCTaGTCAAGTCCACACGTGTATAAGACTAGGAAACAG | + |
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Preference number: 6 (lower is better) Translates to: TSSKGQKKDLII*SSPHVYKTRKQ Trigger: CTGTTTCCTAGTCTTATACACGTGTGGACTTGACAAGATAATGAGATCTTTCTTTTGGCCTTTGCTTGATGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034342.13 ENSMUST00000212410.2 |
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| CDS CAA 72 bp | GAGATAAGCAAAGGCCAAAAGAAAGATCTCATTATCTaGTCAAGTCCACACGTGTATAAGACTAGGAAACAG | + |
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Preference number: 6 (lower is better) Translates to: EISKGQKKDLII*SSPHVYKTRKQ Trigger: CTGTTTCCTAGTCTTATACACGTGTGGACTTGACAAGATAATGAGATCTTTCTTTTGGCCTTTGCTTATCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098464.6 |
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| CDS CAA 72 bp | CTTACAAGCAAAGGCCAAAAGAAAGATCTCATTATCTaGTCAAGTCCACACGTGTATAAGACTAGGAAACAG | + |
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Preference number: 6 (lower is better) Translates to: LTSKGQKKDLII*SSPHVYKTRKQ Trigger: CTGTTTCCTAGTCTTATACACGTGTGGACTTGACAAGATAATGAGATCTTTCTTTTGGCCTTTGCTTGTAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212433.2 |
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| CDS CAA 72 bp | AACACAAGCAAAGGCCAAAAGAAAGATCTCATTATCTaGTCAAGTCCACACGTGTATAAGACTAGGAAACAG | + |
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Preference number: 6 (lower is better) Translates to: NTSKGQKKDLII*SSPHVYKTRKQ Trigger: CTGTTTCCTAGTCTTATACACGTGTGGACTTGACAAGATAATGAGATCTTTCTTTTGGCCTTTGCTTGTGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211809.2 |
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| CDS CAA 90 bp | AGGAAACCAAACACAAGCAAAGGCCAAAAGAAAGATCTCATTATCTaGTCAAGTCCACACGTGTATAAGACTAGGAAACAGAAAATAACG | + |
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Preference number: 6 (lower is better) Translates to: RKPNTSKGQKKDLII*SSPHVYKTRKQKIT Trigger: CGTTATTTTCTGTTTCCTAGTCTTATACACGTGTGGACTTGACAAGATAATGAGATCTTTCTTTTGGCCTTTGCTTGTGTTTGGTTTCCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211809.2 |
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| CDS CAA 72 bp | CTTTTAAGCAAAGGCCAAAAGAAAGATCTCATTATCTaGTCAAGTCCACACGTGTATAAGACTAGGAAACAG | + |
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Preference number: 6 (lower is better) Translates to: LLSKGQKKDLII*SSPHVYKTRKQ Trigger: CTGTTTCCTAGTCTTATACACGTGTGGACTTGACAAGATAATGAGATCTTTCTTTTGGCCTTTGCTTAAAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000212939.2 |
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