RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CKLF (Mus musculus)

Ensembl gene IDs: ENSMUSG00000054400

Ensembl transcript IDs: ENSMUST00000034342.13, ENSMUST00000098464.6, ENSMUST00000211809.2, ENSMUST00000211829.2, ENSMUST00000212410.2, ENSMUST00000212433.2, ENSMUST00000212939.2

Found 101 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCCTGCACCTCCGGTTGGCTGGGTGGCCGCAGGGCGATGGCCCCCTaGGAAACTGTCTTCAACGGCTGCTGGCAGTCTATCCCGCGTGCA +
Preference number: 1 (lower is better)
Translates to: PCTSGWLGGRRAMAP*ETVFNGCWQSIPRA
Trigger: TGCACGCGGGATAGACTGCCAGCAGCCGTTGAAGACAGTTTCCCAGGGGGCCATCGCCCTGCGGCCACCCAGCCAACCGGAGGTGCAGGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR GCA 90 bp CAGGATTCATGGTGGGTTCCAAGCCTCATTATGTCAGGCTGGCCCTaGACCTCCGGTTGGCTGGGTGGCCGCAGGGCGATGGCCCCCTGG +
Preference number: 1 (lower is better)
Translates to: QDSWWVPSLIMSGWP*TSGWLGGRRAMAPW
Trigger: CCAGGGGGCCATCGCCCTGCGGCCACCCAGCCAACCGGAGGTGCAGGGCCAGCCTGACATAATGAGGCTTGGAACCCACCATGAATCCTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR CCA 90 bp GTGGCTGAGGGTCCTGCGCTCAGCTGGGGATCTCCTCCCTGGGGCTaGACGGCCTCTGCTGAGGTGGCTCCTTGTAGAGGTATGTGGTTC +
Preference number: 1 (lower is better)
Translates to: VAEGPALSWGSPPWG*TASAEVAPCRGMWF
Trigger: GAACCACATACCTCTACAAGGAGCCACCTCAGCAGAGGCCGTCCAGCCCCAGGGAGGAGATCCCCAGCTGAGCGCAGGACCCTCAGCCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR CCA 90 bp TGGGTTCCAAGCCTCATTATGTCAGGCTGGCCCTGCACCTCCGGTTaGCTGGGTGGCCGCAGGGCGATGGCCCCCTGGGAAACTGTCTTC +
Preference number: 1 (lower is better)
Translates to: WVPSLIMSGWPCTSG*LGGRRAMAPWETVF
Trigger: GAAGACAGTTTCCCAGGGGGCCATCGCCCTGCGGCCACCCAGCCAACCGGAGGTGCAGGGCCAGCCTGACATAATGAGGCTTGGAACCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR CCA 90 bp AAGGTCCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTaGTTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGTTGGTGTCC +
Preference number: 1 (lower is better)
Translates to: KVPGWLVSRVLKVPG*LVSRVLKVPGWLVS
Trigger: GGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAGCCAGCCAGGGACCTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR CCA 90 bp ACTGAAGGTCCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTaGCTGGTTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGTTGGT +
Preference number: 1 (lower is better)
Translates to: TEGPWLAGVPGTEGP*LVGVPGTEGPWLVG
Trigger: ACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAGCCAGCCAGGGACCTTCAGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR TCA 90 bp GAAGGTCCCTGGCTGGTTGGTGTCCCGGGTACTGAAGGTCCCTGGTaGGGTGGAGCAGAGGCAGCATACGCCTGTGAATCCGAAGGTGAG +
Preference number: 1 (lower is better)
Translates to: EGPWLVGVPGTEGPW*GGAEAAYACESEGE
Trigger: CTCACCTTCGGATTCACAGGCGTATGCTGCCTCTGCTCCACCTCACCAGGGACCTTCAGTACCCGGGACACCAACCAGCCAGGGACCTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR CCA 90 bp AAGGTCACTGACTGGTTAGTGTTCCGGGTACTGAAGGTCCCTGGCTaGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGTTGGTGTCC +
Preference number: 1 (lower is better)
Translates to: KVTDWLVFRVLKVPG*LVSRVLKVPGWLVS
Trigger: GGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAGCCAGCCAGGGACCTTCAGTACCCGGAACACTAACCAGTCAGTGACCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR GCA 90 bp AACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTaGCTCTGCCTCCCGAGTGCTGGAATTAAAGACGTGCACCACCAC +
Preference number: 1 (lower is better)
Translates to: NSLCRPGWPRTQKSA*LCLPSAGIKDVHHH
Trigger: GTGGTGGTGCACGTCTTTAATTCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212433.2
3UTR TCA 90 bp GCAATCTGCTGTCCTCGTTGTGGGAAAATGGCGCCATGCCTAGCTTaGAAACTCAAGACCCAGCAACCACATGCACAGGAGCTGCTGCCA +
Preference number: 1 (lower is better)
Translates to: AICCPRCGKMAPCLA*KLKTQQPHAQELLP
Trigger: TGGCAGCAGCTCCTGTGCATGTGGTTGCTGGGTCTTGAGTTTTCAAGCTAGGCATGGCGCCATTTTCCCACAACGAGGACAGCAGATTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR CCA 90 bp CACTACTACATCTCCTCAGTGTGGGGCCAACCCAGGAGCTGTCTATaGTGGCCCATTTCCTCTCTTGCCTCAGCCAAAGTTGTCCCTCAA +
Preference number: 1 (lower is better)
Translates to: HYYISSVWGQPRSCL*WPISSLASAKVVPQ
Trigger: TTGAGGGACAACTTTGGCTGAGGCAAGAGAGGAAATGGGCCACCATAGACAGCTCCTGGGTTGGCCCCACACTGAGGAGATGTAGTAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR TCA 90 bp GACTGCATGAACTTACTAGATGGCATGGTCCCTACTCAAGGTCACTaGCTGGTTAGTGTTCCGGGTACTGAAGGTCCCTGGCTGGCTGGT +
Preference number: 1 (lower is better)
Translates to: DCMNLLDGMVPTQGH*LVSVPGTEGPWLAG
Trigger: ACCAGCCAGCCAGGGACCTTCAGTACCCGGAACACTAACCAGTCAGTGACCTTGAGTAGGGACCATGCCATCTAGTAAGTTCATGCAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR CCA 90 bp TACTACATCTCCTCAGTGTGGGGCCAACCCAGGAGCTGTCTATGGTaGCCCATTTCCTCTCTTGCCTCAGCCAAAGTTGTCCCTCAAAAG +
Preference number: 1 (lower is better)
Translates to: YYISSVWGQPRSCLW*PISSLASAKVVPQK
Trigger: CTTTTGAGGGACAACTTTGGCTGAGGCAAGAGAGGAAATGGGCCACCATAGACAGCTCCTGGGTTGGCCCCACACTGAGGAGATGTAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR TCA 90 bp CTAGAAAGCTTCCCTAGTCTCCCAGGAAGTTGCTTAGTGCCGACATaGGTTGAAGTCCAGGGTTCTGACAGTCATGGCAGAGCAAGGTCA +
Preference number: 1 (lower is better)
Translates to: LESFPSLPGSCLVPT*VEVQGSDSHGRARS
Trigger: TGACCTTGCTCTGCCATGACTGTCAGAACCCTGGACTTCAACTCATGTCGGCACTAAGCAACTTCCTGGGAGACTAGGGAAGCTTTCTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211829.2
3UTR CAA 90 bp GTCCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGTaGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGTTGGTGTCCCGG +
Preference number: 2 (lower is better)
Translates to: VPGWLVSRVLKVPGW*VSRVLKVPGWLVSR
Trigger: CCGGGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAGCCAGCCAGGGAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR CAA 90 bp GTGGGTTCCAAGCCTCATTATGTCAGGCTGGCCCTGCACCTCCGGTaGGCTGGGTGGCCGCAGGGCGATGGCCCCCTGGGAAACTGTCTT +
Preference number: 2 (lower is better)
Translates to: VGSKPHYVRLALHLR*AGWPQGDGPLGNCL
Trigger: AAGACAGTTTCCCAGGGGGCCATCGCCCTGCGGCCACCCAGCCAACCGGAGGTGCAGGGCCAGCCTGACATAATGAGGCTTGGAACCCAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR CAA 90 bp GTCCCTGGCTGGTTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGTaGGTGTCCCGGGTACTGAAGGTCCCTGGTGAGGTGGAGCAGAGG +
Preference number: 2 (lower is better)
Translates to: VPGWLVSRVLKVPGW*VSRVLKVPGEVEQR
Trigger: CCTCTGCTCCACCTCACCAGGGACCTTCAGTACCCGGGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAACCAGCCAGGGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR-3UTR GCA 90 bp GTCCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGTTGGTGTCCAACCCATGGGCCAGATaGAGGGGGAAGGGGGTGAAA +
Preference number: 2 (lower is better)
Translates to: VPGWLVSRVLKVPGWLVSNPWAR*RGKGVK
Trigger: TTTCACCCCCTTCCCCCTGCATCTGGCCCATGGGTT...GGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAGCCAGCCAGGGAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR-3UTR TCA 90 bp GTCCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGTTGGTGTCCGCGCCATGCCTAGCTTaGAAACTCAAGACCCAGCAA +
Preference number: 2 (lower is better)
Translates to: VPGWLVSRVLKVPGWLVSAPCLA*KLKTQQ
Trigger: TTGCTGGGTCTTGAGTTTTCAAGCTAGGCATGGCGC...GGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAGCCAGCCAGGGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR-3UTR CCA 90 bp CTGCACCTCCGGTTGGCTGGGTGGCCGCAGGGCGATGGCCCCCTGGGAAACTGTCCTTGTAGAGGTATGTaGTTCCTGAATTCCTGTGTC +
Preference number: 2 (lower is better)
Translates to: LHLRLAGWPQGDGPLGNCPCRGM*FLNSCV
Trigger: GACACAGGAATTCAGGAACCACATACCTCTACAAGG...ACAGTTTCCCAGGGGGCCATCGCCCTGCGGCCACCCAGCCAACCGGAGGTGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR-3UTR TCA 90 bp TCTGCCTGCCTCTGCCTCCCGAGTGCTGGAATTAAAGACGTGCACCACCACGCCGGTATCCTGAATCCCTaGGAGCATCCCCCAAGCTTG +
Preference number: 2 (lower is better)
Translates to: SACLCLPSAGIKDVHHHAGILNP*EHPPSL
Trigger: CAAGCTTGGGGGATGCTCTCAGGGATTCAGGATACC...GGCGTGGTGGTGCACGTCTTTAATTCCAGCACTCGGGAGGCAGAGGCAGGCAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212433.2
3UTR-3UTR GCA 90 bp GGTACTGAAGGTCCCTGGCTGGTTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGCCCATTTCCTCTCTTaGCTCAGCCAAAGTTGTCCC +
Preference number: 2 (lower is better)
Translates to: GTEGPWLVGVPGTEGPWLAHFLS*LSQSCP
Trigger: GGGACAACTTTGGCTGAGGCAAGAGAGGAAATGGGC...CAGCCAGGGACCTTCAGTACCCGGGACACCAACCAGCCAGGGACCTTCAGTACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR-3UTR CCA 90 bp CCAGGAAGGACTTTCCACCCTAACCCATGGGCCAGATGCAGGGGGAAGGGGGTGTCCGGCAGCTATCCCTaGATTCACAGCTATACACCA +
Preference number: 2 (lower is better)
Translates to: PGRTFHPNPWARCRGKGVSGSYP*IHSYTP
Trigger: TGGTGTATAGCTGTGAATCCAGGGATAGCTGCCGGA...CACCCCCTTCCCCCTGCATCTGGCCCATGGGTTAGGGTGGAAAGTCCTTCCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR-3UTR GCA 90 bp GTCCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGTTGGTGTCCGTCTATAGGGCATGGTaGAAAATCCATGAAAGCAGA +
Preference number: 2 (lower is better)
Translates to: VPGWLVSRVLKVPGWLVSVYRAW*KIHESR
Trigger: TCTGCTTTCATGGATTTTGCACCATGCCCTATAGAC...GGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAGCCAGCCAGGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR-3UTR CCA 90 bp GAAATCCTATATAAGCACTGCCCCTTTGTCCCAATCTGTGCTGCCCGCTCCGGCCGGCCTCTGCTGAGGTaGCTCCTTGTAGAGGTATGT +
Preference number: 2 (lower is better)
Translates to: EILYKHCPFVPICAARSGRPLLR*LLVEVC
Trigger: ACATACCTCTACAAGGAGCCACCTCAGCAGAGGCCG...GCCGGAGCGGGCAGCACAGATTGGGACAAAGGGGCAGTGCTTATATAGGATTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR CAA 90 bp GGAGCTGTCTATGGTGGCCCATTTCCTCTCTTGCCTCAGCCAAAGTaGTCCCTCAAAAGCCGTCTTTGGGGGCAGCACCACTTCTCTAGT +
Preference number: 2 (lower is better)
Translates to: GAVYGGPFPLLPQPK*SLKSRLWGQHHFSS
Trigger: ACTAGAGAAGTGGTGCTGCCCCCAAAGACGGCTTTTGAGGGACAACTTTGGCTGAGGCAAGAGAGGAAATGGGCCACCATAGACAGCTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR CAA 90 bp AGCAATCTGCTGTCCTCGTTGTGGGAAAATGGCGCCATGCCTAGCTaGAAAACTCAAGACCCAGCAACCACATGCACAGGAGCTGCTGCC +
Preference number: 2 (lower is better)
Translates to: SNLLSSLWENGAMPS*KTQDPATTCTGAAA
Trigger: GGCAGCAGCTCCTGTGCATGTGGTTGCTGGGTCTTGAGTTTTCAAGCTAGGCATGGCGCCATTTTCCCACAACGAGGACAGCAGATTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR-3UTR GCA 90 bp CCTCTGACCCCAGCAGTTCCACAGAGATGTCATCTCAGCGCAAGCCAGCTCAGGTGTCCAGAGAAGCTCTaGCCCCTCAGAAATCCTATA +
Preference number: 2 (lower is better)
Translates to: PLTPAVPQRCHLSASQLRCPEKL*PLRNPI
Trigger: TATAGGATTTCTGAGGGGGCAGAGCTTCTCTGGACA...CCTGAGCTGGCTTGCGCTGAGATGACATCTCTGTGGAACTGCTGGGGTCAGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR-3UTR TCA 90 bp CCAAAGTTGTCCCTCAAAAGCCGTCTTTGGGGGCAGCACCACTTCTCTAGTACCATTTTCTTCTTGGTGTaGCACTCTCCTTGGAGGAGC +
Preference number: 2 (lower is better)
Translates to: PKLSLKSRLWGQHHFSSTIFFLV*HSPWRS
Trigger: GCTCCTCCAAGGAGAGTGTCACACCAAGAAGAAAAT...GGTACTAGAGAAGTGGTGCTGCCCCCAAAGACGGCTTTTGAGGGACAACTTTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR-3UTR TCA 90 bp AAACTCAAGACCCAGCAACCACATGCACAGGAGCTGCTGCCAGCCAACCCAGAGAAACCTATCAATTCTTaGGTACCCCAAGCTCATGAC +
Preference number: 2 (lower is better)
Translates to: KLKTQQPHAQELLPANPEKPINS*VPQAHD
Trigger: GTCATGAGCTTGGGGTACTCAAGAATTGATAGGTTT...CTCTGGGTTGGCTGGCAGCAGCTCCTGTGCATGTGGTTGCTGGGTCTTGAGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR-3UTR TCA 90 bp GAAGCTCTGCCCCCTCAGAAATCCTATATAAGCACTGCCCCTTTGTCCCAATCTGAGGTATGTGGTTCCTaGATTCCTGTGTCTCAGGAT +
Preference number: 2 (lower is better)
Translates to: EALPPQKSYISTAPLSQSEVCGS*IPVSQD
Trigger: ATCCTGAGACACAGGAATTCAGGAACCACATACCTC...AGATTGGGACAAAGGGGCAGTGCTTATATAGGATTTCTGAGGGGGCAGAGCTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR CAA 90 bp ATGGCAGAGCAAGGTCAGTTCTATGTGGCCCTTGCCCTCCAAGGATaGTCTTTGTTGAGGTTTCTGGTATTAGAGCCAACACAGACACAA +
Preference number: 2 (lower is better)
Translates to: MAEQGQFYVALALQG*SLLRFLVLEPTQTQ
Trigger: TTGTGTCTGTGTTGGCTCTAATACCAGAAACCTCAACAAAGACAATCCTTGGAGGGCAAGGGCCACATAGAACTGACCTTGCTCTGCCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211829.2
3UTR-3UTR CCA 90 bp TGGCACATAAGGGCACAGTCGGCAATAGTACATGTTACTGTCAGGAAACCAAACAAGGTCAGTTCTATGTaGCCCTTGCCCTCCAAGGAT +
Preference number: 2 (lower is better)
Translates to: WHIRAQSAIVHVTVRKPNKVSSM*PLPSKD
Trigger: ATCCTTGGAGGGCAAGGGCCACATAGAACTGACCTT...GTTTGGTTTCCTGACAGTAACATGTACTATTGCCGACTGTGCCCTTATGTGCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211829.2
3UTR-3UTR GCA 90 bp TGGCACATAAGGGCACAGTCGGCAATAGTACATGTTACTGTCAGGAAACCAAACGTTCTATGTGGCCCTTaGCCTCCAAGGATTGTCTTT +
Preference number: 2 (lower is better)
Translates to: WHIRAQSAIVHVTVRKPNVLCGP*PPRIVF
Trigger: AAAGACAATCCTTGGAGGGCAAGGGCCACATAGAAC...GTTTGGTTTCCTGACAGTAACATGTACTATTGCCGACTGTGCCCTTATGTGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211829.2
3UTR-3UTR TCA 90 bp GATGATTTCCATTTGTCTGTTTTGACAGCTGTGGTAGCCACTGGAACAGTTGATGGAGATCCAAGTAGTTaGCTAAGGTGTCTTCCTAAG +
Preference number: 2 (lower is better)
Translates to: DDFHLSVLTAVVATGTVDGDPSS*LRCLPK
Trigger: CTTAGGAAGACACCTTAGTCAACTACTTGGATCTCC...ATCAACTGTTCCAGTGGCTACCACAGCTGTCAAAACAGACAAATGGAAATCATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212433.2
3UTR-3UTR CAA 90 bp CGGGTACTGAAGGTCCCTGGCTGGTTGGTGTCCCGGGTACTGAAGGTCCCTGGTGCCCTGCACCTCCGGTaGGCTGGGTGGCCGCAGGGC +
Preference number: 3 (lower is better)
Translates to: RVLKVPGWLVSRVLKVPGALHLR*AGWPQG
Trigger: GCCCTGCGGCCACCCAGCCAACCGGAGGTGCAGGGC...ACCAGGGACCTTCAGTACCCGGGACACCAACCAGCCAGGGACCTTCAGTACCCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR CCA 72 bp CCTGCACCTCCGGTTGGCTGGGTGGCCGCAGGGCGATaGCCCCCTGGGAAACTGTCTTCAACGGCTGCTGGC +
Preference number: 3 (lower is better)
Translates to: PAPPVGWVAAGR*PPGKLSSTAAG
Trigger: GCCAGCAGCCGTTGAAGACAGTTTCCCAGGGGGCCATCGCCCTGCGGCCACCCAGCCAACCGGAGGTGCAGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR CCA 72 bp AGCCTCATTATGTCAGGCTGGCCCTGCACCTCCGGTTaGCTGGGTGGCCGCAGGGCGATGGCCCCCTGGGAA +
Preference number: 3 (lower is better)
Translates to: SLIMSGWPCTSG*LGGRRAMAPWE
Trigger: TTCCCAGGGGGCCATCGCCCTGCGGCCACCCAGCCAACCGGAGGTGCAGGGCCAGCCTGACATAATGAGGCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR CCA 72 bp GGTCCTGCGCTCAGCTGGGGATCTCCTCCCTGGGGCTaGACGGCCTCTGCTGAGGTGGCTCCTTGTAGAGGT +
Preference number: 3 (lower is better)
Translates to: GPALSWGSPPWG*TASAEVAPCRG
Trigger: ACCTCTACAAGGAGCCACCTCAGCAGAGGCCGTCCAGCCCCAGGGAGGAGATCCCCAGCTGAGCGCAGGACC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR CCA 72 bp TATGTCAGGCTGGCCCTGCACCTCCGGTTGGCTGGGTaGCCGCAGGGCGATGGCCCCCTGGGAAACTGTCTT +
Preference number: 3 (lower is better)
Translates to: YVRLALHLRLAG*PQGDGPLGNCL
Trigger: AAGACAGTTTCCCAGGGGGCCATCGCCCTGCGGCCACCCAGCCAACCGGAGGTGCAGGGCCAGCCTGACATA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR CCA 72 bp GGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTaGTTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGG +
Preference number: 3 (lower is better)
Translates to: GWLVSRVLKVPG*LVSRVLKVPGW
Trigger: CCAGCCAGGGACCTTCAGTACCCGGGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAGCCAGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR CCA 72 bp CCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTaGCTGGTTGGTGTCCCGGGTACTGAAGGTCCCTGG +
Preference number: 3 (lower is better)
Translates to: PWLAGVPGTEGP*LVGVPGTEGPW
Trigger: CCAGGGACCTTCAGTACCCGGGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAGCCAGCCAGGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR CCA 72 bp TCCGGTTGGCTGGGTGGCCGCAGGGCGATGGCCCCCTaGGAAACTGTCTTCAACGGCTGCTGGCAGTCTATC +
Preference number: 3 (lower is better)
Translates to: SGWLGGRRAMAP*ETVFNGCWQSI
Trigger: GATAGACTGCCAGCAGCCGTTGAAGACAGTTTCCCAGGGGGCCATCGCCCTGCGGCCACCCAGCCAACCGGA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR CCA 72 bp GGCTGGTTGGTGTCCCGGGTACTGAAGGTCCCTGGCTaGTTGGTGTCCCGGGTACTGAAGGTCCCTGGTGAG +
Preference number: 3 (lower is better)
Translates to: GWLVSRVLKVPG*LVSRVLKVPGE
Trigger: CTCACCAGGGACCTTCAGTACCCGGGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAACCAGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR CCA 72 bp GATTCATGGTGGGTTCCAAGCCTCATTATGTCAGGCTaGCCCTGCACCTCCGGTTGGCTGGGTGGCCGCAGG +
Preference number: 3 (lower is better)
Translates to: DSWWVPSLIMSG*PCTSGWLGGRR
Trigger: CCTGCGGCCACCCAGCCAACCGGAGGTGCAGGGCCAGCCTGACATAATGAGGCTTGGAACCCACCATGAATC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR CCA 72 bp GACTGGTTAGTGTTCCGGGTACTGAAGGTCCCTGGCTaGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGG +
Preference number: 3 (lower is better)
Translates to: DWLVFRVLKVPG*LVSRVLKVPGW
Trigger: CCAGCCAGGGACCTTCAGTACCCGGGACACCAGCCAGCCAGGGACCTTCAGTACCCGGAACACTAACCAGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR TCA 72 bp CTGGAACAGTTGATGGTGCAAGCGTCCTCGATGGTGTaGGTGGGTCTCTTGACTCGTGTGCCTGCTCTTGGG +
Preference number: 3 (lower is better)
Translates to: LEQLMVQASSMV*VGLLTRVPALG
Trigger: CCCAAGAGCAGGCACACGAGTCAAGAGACCCACTCACACCATCGAGGACGCTTGCACCATCAACTGTTCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000212433.2
ENSMUST00000212939.2
3UTR CCA 72 bp TCCTCAGTGTGGGGCCAACCCAGGAGCTGTCTATGGTaGCCCATTTCCTCTCTTGCCTCAGCCAAAGTTGTC +
Preference number: 3 (lower is better)
Translates to: SSVWGQPRSCLW*PISSLASAKVV
Trigger: GACAACTTTGGCTGAGGCAAGAGAGGAAATGGGCCACCATAGACAGCTCCTGGGTTGGCCCCACACTGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR GCA 72 bp TGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTaGCTCTGCCTCCCGAGTGCTGGAATTAAAGACGTG +
Preference number: 3 (lower is better)
Translates to: CRPGWPRTQKSA*LCLPSAGIKDV
Trigger: CACGTCTTTAATTCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212433.2
3UTR CCA 72 bp ATCTCCTCAGTGTGGGGCCAACCCAGGAGCTGTCTATaGTGGCCCATTTCCTCTCTTGCCTCAGCCAAAGTT +
Preference number: 3 (lower is better)
Translates to: ISSVWGQPRSCL*WPISSLASAKV
Trigger: AACTTTGGCTGAGGCAAGAGAGGAAATGGGCCACCATAGACAGCTCCTGGGTTGGCCCCACACTGAGGAGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR GCA 72 bp CTCGATGGTGTGAGTGGGTCTCTTGACTCGTGTGCCTaGTCTTGGGACTCTTTTCCTCCCGTTGAGTTGTCA +
Preference number: 3 (lower is better)
Translates to: LDGVSGSLDSCA*SWDSFPPVELS
Trigger: TGACAACTCAACGGGAGGAAAAGAGTCCCAAGAGCAGGCACACGAGTCAAGAGACCCACTCACACCATCGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000212433.2
ENSMUST00000212939.2
3UTR CCA 72 bp ACGGCCTCTGCTGAGGTGGCTCCTTGTAGAGGTATGTaGTTCCTGAATTCCTGTGTCTCAGGATGCCTTTCC +
Preference number: 3 (lower is better)
Translates to: TASAEVAPCRGM*FLNSCVSGCLS
Trigger: GGAAAGGCATCCTGAGACACAGGAATTCAGGAACCACATACCTCTACAAGGAGCCACCTCAGCAGAGGCCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR CCA 72 bp GGTGTGAGTGGGTCTCTTGACTCGTGTGCCTGCTCTTaGGACTCTTTTCCTCCCGTTGAGTTGTCATGTCCA +
Preference number: 3 (lower is better)
Translates to: GVSGSLDSCACS*DSFPPVELSCP
Trigger: TGGACATGACAACTCAACGGGAGGAAAAGAGTCCCAAGAGCAGGCACACGAGTCAAGAGACCCACTCACACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000212433.2
ENSMUST00000212939.2
3UTR TCA 72 bp TGTCCTCGTTGTGGGAAAATGGCGCCATGCCTAGCTTaGAAACTCAAGACCCAGCAACCACATGCACAGGAG +
Preference number: 3 (lower is better)
Translates to: CPRCGKMAPCLA*KLKTQQPHAQE
Trigger: CTCCTGTGCATGTGGTTGCTGGGTCTTGAGTTTTCAAGCTAGGCATGGCGCCATTTTCCCACAACGAGGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR GCA 72 bp ACCCAGGAGCTGTCTATGGTGGCCCATTTCCTCTCTTaGCTCAGCCAAAGTTGTCCCTCAAAAGCCGTCTTT +
Preference number: 3 (lower is better)
Translates to: TQELSMVAHFLS*LSQSCPSKAVF
Trigger: AAAGACGGCTTTTGAGGGACAACTTTGGCTGAGGCAAGAGAGGAAATGGGCCACCATAGACAGCTCCTGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR-3UTR CAA 90 bp TTGACAGCTGTGGTAGCCACTGGAACAGTTGATGGTGCAAGCGTCCTCGATGGTTCCCCCAAGCTTGGATaGATTAGCAGTGAGCAGAGA +
Preference number: 3 (lower is better)
Translates to: LTAVVATGTVDGASVLDGSPKLG*ISSEQR
Trigger: TCTCTGCTCACTGCTAATCAATCCAAGCTTGGGGGA...ACCATCGAGGACGCTTGCACCATCAACTGTTCCAGTGGCTACCACAGCTGTCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212433.2
3UTR-3UTR CAA 90 bp TCACCCGATGATTTCCATTTGTCTGTTTTGACAGCTGTGGTAGCCACTGGAACACTCGTGTGCCTGCTCTaGGGACTCTTTTCCTCCCGT +
Preference number: 3 (lower is better)
Translates to: SPDDFHLSVLTAVVATGTLVCLL*GLFSSR
Trigger: ACGGGAGGAAAAGAGTCCCAAGAGCAGGCACACGAG...TGTTCCAGTGGCTACCACAGCTGTCAAAACAGACAAATGGAAATCATCGGGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000212433.2
ENSMUST00000212939.2
3UTR TCA 72 bp TTCCCTAGTCTCCCAGGAAGTTGCTTAGTGCCGACATaGGTTGAAGTCCAGGGTTCTGACAGTCATGGCAGA +
Preference number: 3 (lower is better)
Translates to: FPSLPGSCLVPT*VEVQGSDSHGR
Trigger: TCTGCCATGACTGTCAGAACCCTGGACTTCAACTCATGTCGGCACTAAGCAACTTCCTGGGAGACTAGGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211829.2
3UTR GCA 72 bp AAGCAGAGGCCATTCCACATCCCAGTCTACGACCACTaGAGTAAAACACCCCACAAGAGATGTCCAAATGTG +
Preference number: 3 (lower is better)
Translates to: KQRPFHIPVYDH*SKTPHKRCPNV
Trigger: CACATTTGGACATCTCTTGTGGGGTGTTTTACTGCAGTGGTCGTAGACTGGGATGTGGAATGGCCTCTGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR GCA 72 bp CCTGCCTCTGCCTCCCGAGTGCTGGAATTAAAGACGTaGACCACCACGCCCGGCTTATTTTTAATAAAAGAA +
Preference number: 3 (lower is better)
Translates to: PASASRVLELKT*TTTPGLFLIKE
Trigger: TTCTTTTATTAAAAATAAGCCGGGCGTGGTGGTGCACGTCTTTAATTCCAGCACTCGGGAGGCAGAGGCAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000212433.2
3UTR TCA 72 bp AATCTCTTGCTGAAGGGCCACCTAGACCTCACCCGATaGTTTCCATTTGTCTGTTTTGACAGCTGTGGTAGC +
Preference number: 3 (lower is better)
Translates to: NLLLKGHLDLTR*FPFVCFDSCGS
Trigger: GCTACCACAGCTGTCAAAACAGACAAATGGAAATCATCGGGTGAGGTCTAGGTGGCCCTTCAGCAAGAGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000212433.2
ENSMUST00000212939.2
3UTR-3UTR CAA 90 bp CACATAAGGGCACAGTCGGCAATAGTACATGTTACTGTCAGGAAACCAAACACCCTTGCCCTCCAAGGATaGTCTTTGTTGAGGTTTCTG +
Preference number: 3 (lower is better)
Translates to: HIRAQSAIVHVTVRKPNTLALQG*SLLRFL
Trigger: CAGAAACCTCAACAAAGACAATCCTTGGAGGGCAAG...GGTGTTTGGTTTCCTGACAGTAACATGTACTATTGCCGACTGTGCCCTTATGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211829.2
3UTR CCA 72 bp GGGTTATTTGGGGGTATGTATAGTGTCTATAGGGCATaGTGCAAAATCCATGAAAGCAGAGGCCATTCCACA +
Preference number: 3 (lower is better)
Translates to: GLFGGMYSVYRA*CKIHESRGHST
Trigger: TGTGGAATGGCCTCTGCTTTCATGGATTTTGCACCATGCCCTATAGACACTATACATACCCCCAAATAACCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR-3UTR CAA 90 bp GTCAGGAAACCAAACACCTCCTATCTAGAAAGCTTCCCTAGTCTCCCAGGAAGTCTCCAAGGATTGTCTTaGTTGAGGTTTCTGGTATTA +
Preference number: 3 (lower is better)
Translates to: VRKPNTSYLESFPSLPGSLQGLS*LRFLVL
Trigger: TAATACCAGAAACCTCAACAAAGACAATCCTTGGAG...ACTTCCTGGGAGACTAGGGAAGCTTTCTAGATAGGAGGTGTTTGGTTTCCTGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211829.2
3UTR-3UTR CAA 90 bp GCAATAGTACATGTTACTGTCAGGAAACCAAACACCTCCTATCTAGAAAGCTTCAGTTCTATGTGGCCCTaGCCCTCCAAGGATTGTCTT +
Preference number: 3 (lower is better)
Translates to: AIVHVTVRKPNTSYLESFSSMWP*PSKDCL
Trigger: AAGACAATCCTTGGAGGGCAAGGGCCACATAGAACT...GAAGCTTTCTAGATAGGAGGTGTTTGGTTTCCTGACAGTAACATGTACTATTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211829.2
3UTR GCA 72 bp TTATTTGGGGGTATGTATAGTGTCTATAGGGCATGGTaGAAAATCCATGAAAGCAGAGGCCATTCCACATCC +
Preference number: 3 (lower is better)
Translates to: LFGGMYSVYRAW*KIHESRGHSTS
Trigger: GGATGTGGAATGGCCTCTGCTTTCATGGATTTTGCACCATGCCCTATAGACACTATACATACCCCCAAATAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR-3UTR CAA 90 bp TTCTGGCACATAAGGGCACAGTCGGCAATAGTACATGTTACTGTCAGGAAACCACAAGGATTGTCTTTGTaGAGGTTTCTGGTATTAGAG +
Preference number: 3 (lower is better)
Translates to: FWHIRAQSAIVHVTVRKPQGLSL*RFLVLE
Trigger: CTCTAATACCAGAAACCTCAACAAAGACAATCCTTG...TGGTTTCCTGACAGTAACATGTACTATTGCCGACTGTGCCCTTATGTGCCAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211829.2
3UTR TCA 72 bp CAAACAATAAAGAGAATTTATGTTCTGTGGGTATCCTaGATCCCTGAGAGCATCCCCCAAGCTTGGATTGAT +
Preference number: 3 (lower is better)
Translates to: QTIKRIYVLWVS*IPESIPQAWID
Trigger: ATCAATCCAAGCTTGGGGGATGCTCTCAGGGATTCAGGATACCCACAGAACATAAATTCTCTTTATTGTTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212433.2
3UTR CAA 72 bp TGGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGTaGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGTTG +
Preference number: 4 (lower is better)
Translates to: WLVSRVLKVPGW*VSRVLKVPGWL
Trigger: CAACCAGCCAGGGACCTTCAGTACCCGGGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAGCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR CAA 72 bp TGGTTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGTaGGTGTCCCGGGTACTGAAGGTCCCTGGTGAGGTG +
Preference number: 4 (lower is better)
Translates to: WLVSRVLKVPGW*VSRVLKVPGEV
Trigger: CACCTCACCAGGGACCTTCAGTACCCGGGACACCAACCAGCCAGGGACCTTCAGTACCCGGGACACCAACCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR CAA 72 bp TATGGTGGCCCATTTCCTCTCTTGCCTCAGCCAAAGTaGTCCCTCAAAAGCCGTCTTTGGGGGCAGCACCAC +
Preference number: 4 (lower is better)
Translates to: YGGPFPLLPQPK*SLKSRLWGQHH
Trigger: GTGGTGCTGCCCCCAAAGACGGCTTTTGAGGGACAACTTTGGCTGAGGCAAGAGAGGAAATGGGCCACCATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
3UTR CAA 72 bp CTGTCCTCGTTGTGGGAAAATGGCGCCATGCCTAGCTaGAAAACTCAAGACCCAGCAACCACATGCACAGGA +
Preference number: 4 (lower is better)
Translates to: LSSLWENGAMPS*KTQDPATTCTG
Trigger: TCCTGTGCATGTGGTTGCTGGGTCTTGAGTTTTCAAGCTAGGCATGGCGCCATTTTCCCACAACGAGGACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
CDS-3UTR CCA 90 bp GTGAGTGGGTCTCTTGACTCGTGTGCCTGCTCTTGGGACTCTTTTCCTCCCGTTAGTGATGACGATATATaGTTCAGGGGCTTGTCCCAC +
Preference number: 4 (lower is better)
Translates to: VSGSLDSCACSWDSFPPVSDDDI*FRGLSH
Trigger: GTGGGACAAGCCCCTGAACCATATATCGTCATCACT...AACGGGAGGAAAAGAGTCCCAAGAGCAGGCACACGAGTCAAGAGACCCACTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000212433.2
ENSMUST00000212939.2
CDS-3UTR CCA 90 bp TCTACGACCACTGCAGTAAAACACCCCACAAGAGATGTCCAAATGTGCCTGGGGAGTGATGACGATATATaGTTCAGGGGCTTGTCCCAC +
Preference number: 4 (lower is better)
Translates to: STTTAVKHPTRDVQMCLGSDDDI*FRGLSH
Trigger: GTGGGACAAGCCCCTGAACCATATATCGTCATCACT...CCCCAGGCACATTTGGACATCTCTTGTGGGGTGTTTTACTGCAGTGGTCGTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
CDS-3UTR CCA 90 bp CAATCTCTTGCTGAAGGGCCACCTAGACCTCACCCGATGATTTCCATTTGTCTGAGTGATGACGATATATaGTTCAGGGGCTTGTCCCAC +
Preference number: 4 (lower is better)
Translates to: QSLAEGPPRPHPMISICLSDDDI*FRGLSH
Trigger: GTGGGACAAGCCCCTGAACCATATATCGTCATCACT...CAGACAAATGGAAATCATCGGGTGAGGTCTAGGTGGCCCTTCAGCAAGAGATTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000212433.2
ENSMUST00000212939.2
CDS-3UTR CCA 90 bp ATAAGGGCACAGTCGGCAATAGTACATGTTACTGTCAGGAAACCAAACACCTCCAAGGTCAGTTCTATGTaGCCCTTGCCCTCCAAGGAT +
Preference number: 4 (lower is better)
Translates to: IRAQSAIVHVTVRKPNTSKVSSM*PLPSKD
Trigger: ATCCTTGGAGGGCAAGGGCCACATAGAACTGACCTT...GGAGGTGTTTGGTTTCCTGACAGTAACATGTACTATTGCCGACTGTGCCCTTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212410.2
CDS-3UTR CCA 90 bp GCACATAAGGGCACAGTCGGCAATAGTACATGTTACTGTCAGGAAACCAAACACAGTGATGACGATATATaGTTCAGGGGCTTGTCCCAC +
Preference number: 4 (lower is better)
Translates to: AHKGTVGNSTCYCQETKHSDDDI*FRGLSH
Trigger: GTGGGACAAGCCCCTGAACCATATATCGTCATCACT...GTGTTTGGTTTCCTGACAGTAACATGTACTATTGCCGACTGTGCCCTTATGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212410.2
3UTR CAA 72 bp CAAGGTCAGTTCTATGTGGCCCTTGCCCTCCAAGGATaGTCTTTGTTGAGGTTTCTGGTATTAGAGCCAACA +
Preference number: 4 (lower is better)
Translates to: QGQFYVALALQG*SLLRFLVLEPT
Trigger: TGTTGGCTCTAATACCAGAAACCTCAACAAAGACAATCCTTGGAGGGCAAGGGCCACATAGAACTGACCTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211829.2
CDS-3UTR TCA 90 bp GCAATAGTACATGTTACTGTCAGGAAACCAAACACCTCCTATCTAGAAAGCTTCAGCATGCTCCTGGTTTaGGAACAGCTCCGAAGTCTC +
Preference number: 4 (lower is better)
Translates to: AIVHVTVRKPNTSYLESFSMLLV*EQLRSL
Trigger: GAGACTTCGGAGCTGTTCTCAAACCAGGAGCATGCT...GAAGCTTTCTAGATAGGAGGTGTTTGGTTTCCTGACAGTAACATGTACTATTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211829.2
3UTR CAA 72 bp TTCTATGTGGCCCTTGCCCTCCAAGGATTGTCTTTGTaGAGGTTTCTGGTATTAGAGCCAACACAGACACAA +
Preference number: 4 (lower is better)
Translates to: FYVALALQGLSL*RFLVLEPTQTQ
Trigger: TTGTGTCTGTGTTGGCTCTAATACCAGAAACCTCAACAAAGACAATCCTTGGAGGGCAAGGGCCACATAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211829.2
CDS-3UTR GCA 90 bp AGTAGACTTTTTCTGATAAGGTTGACGTGGACGAAACCGAAGTTTCTGGCACATGTTCTATGTGGCCCTTaGCCTCCAAGGATTGTCTTT +
Preference number: 4 (lower is better)
Translates to: SRLFLIRLTWTKPKFLAHVLCGP*PPRIVF
Trigger: AAAGACAATCCTTGGAGGGCAAGGGCCACATAGAAC...ATGTGCCAGAAACTTCGGTTTCGTCCACGTCAACCTTATCAGAAAAAGTCTACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212410.2
CDS-3UTR CCA 90 bp ATAAGGGCACAGTCGGCAATAGTACATGTTACTGTCAGGAAACCAAACACCTCCTTAAAAGCATGCTCCTaGTTTGAGAACAGCTCCGAA +
Preference number: 4 (lower is better)
Translates to: IRAQSAIVHVTVRKPNTSLKACS*FENSSE
Trigger: TTCGGAGCTGTTCTCAAACCAGGAGCATGCTTTTAA...GGAGGTGTTTGGTTTCCTGACAGTAACATGTACTATTGCCGACTGTGCCCTTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211829.2
CDS-3UTR TCA 90 bp GTTGAGGTTTCTGGTATTAGAGCCAACACAGACACAATGAGCATGCATAATGCTATCACTTGCTTCCAATaGTGGTTCCAGAAGGTACCA +
Preference number: 4 (lower is better)
Translates to: VEVSGIRANTDTMSMHNAITCFQ*WFQKVP
Trigger: TGGTACCTTCTGGAACCATCATTGGAAGCAAGTGAT...AGCATTATGCATGCTCATTGTGTCTGTGTTGGCTCTAATACCAGAAACCTCAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211829.2
CDS-3UTR GCA 90 bp GCACATAAGGGCACAGTCGGCAATAGTACATGTTACTGTCAGGAAACCAAACACTACCATTTAAAAGCATaGTCCTGGTTTGAGAACAGC +
Preference number: 4 (lower is better)
Translates to: AHKGTVGNSTCYCQETKHYHLKA*SWFENS
Trigger: GCTGTTCTCAAACCAGGAGCATGCTTTTAAATGGTA...GTGTTTGGTTTCCTGACAGTAACATGTACTATTGCCGACTGTGCCCTTATGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211829.2
3UTR CAA 72 bp GTCATCGATGTCATTAGTAGACTTTTTCTGATAAGGTaGACGTGGACGAAACCGAAGTTTCTGGCACATAAG +
Preference number: 4 (lower is better)
Translates to: VIDVISRLFLIR*TWTKPKFLAHK
Trigger: CTTATGTGCCAGAAACTTCGGTTTCGTCCACGTCAACCTTATCAGAAAAAGTCTACTAATGACATCGATGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000211829.2
ENSMUST00000212410.2
CDS-3UTR CAA 90 bp TTCTGGCACATAAGGGCACAGTCGGCAATAGTACATGTTACTGTCAGGAAACCAAGTTCTATGTGGCCCTaGCCCTCCAAGGATTGTCTT +
Preference number: 5 (lower is better)
Translates to: FWHIRAQSAIVHVTVRKPSSMWP*PSKDCL
Trigger: AAGACAATCCTTGGAGGGCAAGGGCCACATAGAACT...TGGTTTCCTGACAGTAACATGTACTATTGCCGACTGTGCCCTTATGTGCCAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212410.2
CDS-3UTR CAA 90 bp AATAGTACATGTTACTGTCAGGAAACCAAACACCTCCTATCTAGAAAGCTTCCCAAGCATGCTCCTGGTTaGAGAACAGCTCCGAAGTCT +
Preference number: 5 (lower is better)
Translates to: NSTCYCQETKHLLSRKLPKHAPG*RTAPKS
Trigger: AGACTTCGGAGCTGTTCTCAAACCAGGAGCATGCTT...GGGAAGCTTTCTAGATAGGAGGTGTTTGGTTTCCTGACAGTAACATGTACTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211829.2
CDS-3UTR CAA 90 bp GTCGGCAATAGTACATGTTACTGTCAGGAAACCAAACACCTCCTATCTAGAAAGCAAGGATTGTCTTTGTaGAGGTTTCTGGTATTAGAG +
Preference number: 5 (lower is better)
Translates to: VGNSTCYCQETKHLLSRKQGLSL*RFLVLE
Trigger: CTCTAATACCAGAAACCTCAACAAAGACAATCCTTG...CTTTCTAGATAGGAGGTGTTTGGTTTCCTGACAGTAACATGTACTATTGCCGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212410.2
CDS-3UTR CAA 90 bp GTCATCGATGTCATTAGTAGACTTTTTCTGATAAGGTTGACGTGGACGAAACCGCTCCAAGGATTGTCTTaGTTGAGGTTTCTGGTATTA +
Preference number: 5 (lower is better)
Translates to: VIDVISRLFLIRLTWTKPLQGLS*LRFLVL
Trigger: TAATACCAGAAACCTCAACAAAGACAATCCTTGGAG...CGGTTTCGTCCACGTCAACCTTATCAGAAAAAGTCTACTAATGACATCGATGAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212410.2
CDS TCA 72 bp ATCCTCCAGCCTGAAACGCTCATCACTTGCTTCCAATaGTGGTTCCAGAAGGTACCATTTAAAAGCATGCTC +
Preference number: 6 (lower is better)
Translates to: ILQPETLITCFQ*WFQKVPFKSML
Trigger: GAGCATGCTTTTAAATGGTACCTTCTGGAACCATCATTGGAAGCAAGTGATGAGCGTTTCAGGCTGGAGGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211829.2
CDS GCA 72 bp TCCAATGATGGTTCCAGAAGGTACCATTTAAAAGCATaGTCCTGGTTTGAGAACAGCTCCGAAGTCTCCTCT +
Preference number: 6 (lower is better)
Translates to: SNDGSRRYHLKA*SWFENSSEVSS
Trigger: AGAGGAGACTTCGGAGCTGTTCTCAAACCAGGAGCATGCTTTTAAATGGTACCTTCTGGAACCATCATTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211829.2
CDS CAA 90 bp AACGGTGACTTCAAACCCAGTGATGACGATATATGGTTCAGGGGCTaGTCCCACGATGAAAAAGATCATAGATGTCACAGTTACCACCAA +
Preference number: 6 (lower is better)
Translates to: NGDFKPSDDDIWFRG*SHDEKDHRCHSYHQ
Trigger: TTGGTGGTAACTGTGACATCTATGATCTTTTTCATCGTGGGACAAGCCCCTGAACCATATATCGTCATCACTGGGTTTGAAGTCACCGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000034342.13
ENSMUST00000098464.6
ENSMUST00000211809.2
ENSMUST00000212410.2
ENSMUST00000212433.2
ENSMUST00000212939.2
CDS CAA 72 bp TCAGGAAACCAAACACCCCTCCAAGGATTGTCTTTGTaGAGGTTTCTGGTATTAGAGCCAACACAGACACAA +
Preference number: 6 (lower is better)
Translates to: SGNQTPLQGLSL*RFLVLEPTQTQ
Trigger: TTGTGTCTGTGTTGGCTCTAATACCAGAAACCTCAACAAAGACAATCCTTGGAGGGGTGTTTGGTTTCCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034342.13
CDS CCA 72 bp AATAACGGTGACTTCAAACCCAGTGATGACGATATATaGTTCAGGGGCTTGTCCCACGATGAAAAAGATCAT +
Preference number: 6 (lower is better)
Translates to: NNGDFKPSDDDI*FRGLSHDEKDH
Trigger: ATGATCTTTTTCATCGTGGGACAAGCCCCTGAACCATATATCGTCATCACTGGGTTTGAAGTCACCGTTATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000034342.13
ENSMUST00000098464.6
ENSMUST00000211809.2
ENSMUST00000212410.2
ENSMUST00000212433.2
ENSMUST00000212939.2
CDS CAA 72 bp TTCAAACCCAGTGATGACGATATATGGTTCAGGGGCTaGTCCCACGATGAAAAAGATCATAGATGTCACAGT +
Preference number: 6 (lower is better)
Translates to: FKPSDDDIWFRG*SHDEKDHRCHS
Trigger: ACTGTGACATCTATGATCTTTTTCATCGTGGGACAAGCCCCTGAACCATATATCGTCATCACTGGGTTTGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000034342.13
ENSMUST00000098464.6
ENSMUST00000211809.2
ENSMUST00000212410.2
ENSMUST00000212433.2
ENSMUST00000212939.2
CDS CAA 72 bp ACATCAAGCAAAGGCCAAAAGAAAGATCTCATTATCTaGTCAAGTCCACACGTGTATAAGACTAGGAAACAG +
Preference number: 6 (lower is better)
Translates to: TSSKGQKKDLII*SSPHVYKTRKQ
Trigger: CTGTTTCCTAGTCTTATACACGTGTGGACTTGACAAGATAATGAGATCTTTCTTTTGGCCTTTGCTTGATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034342.13
ENSMUST00000212410.2
CDS CAA 72 bp GAGATAAGCAAAGGCCAAAAGAAAGATCTCATTATCTaGTCAAGTCCACACGTGTATAAGACTAGGAAACAG +
Preference number: 6 (lower is better)
Translates to: EISKGQKKDLII*SSPHVYKTRKQ
Trigger: CTGTTTCCTAGTCTTATACACGTGTGGACTTGACAAGATAATGAGATCTTTCTTTTGGCCTTTGCTTATCTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098464.6
CDS CAA 72 bp CTTACAAGCAAAGGCCAAAAGAAAGATCTCATTATCTaGTCAAGTCCACACGTGTATAAGACTAGGAAACAG +
Preference number: 6 (lower is better)
Translates to: LTSKGQKKDLII*SSPHVYKTRKQ
Trigger: CTGTTTCCTAGTCTTATACACGTGTGGACTTGACAAGATAATGAGATCTTTCTTTTGGCCTTTGCTTGTAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212433.2
CDS CAA 72 bp AACACAAGCAAAGGCCAAAAGAAAGATCTCATTATCTaGTCAAGTCCACACGTGTATAAGACTAGGAAACAG +
Preference number: 6 (lower is better)
Translates to: NTSKGQKKDLII*SSPHVYKTRKQ
Trigger: CTGTTTCCTAGTCTTATACACGTGTGGACTTGACAAGATAATGAGATCTTTCTTTTGGCCTTTGCTTGTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211809.2
CDS CAA 90 bp AGGAAACCAAACACAAGCAAAGGCCAAAAGAAAGATCTCATTATCTaGTCAAGTCCACACGTGTATAAGACTAGGAAACAGAAAATAACG +
Preference number: 6 (lower is better)
Translates to: RKPNTSKGQKKDLII*SSPHVYKTRKQKIT
Trigger: CGTTATTTTCTGTTTCCTAGTCTTATACACGTGTGGACTTGACAAGATAATGAGATCTTTCTTTTGGCCTTTGCTTGTGTTTGGTTTCCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211809.2
CDS CAA 72 bp CTTTTAAGCAAAGGCCAAAAGAAAGATCTCATTATCTaGTCAAGTCCACACGTGTATAAGACTAGGAAACAG +
Preference number: 6 (lower is better)
Translates to: LLSKGQKKDLII*SSPHVYKTRKQ
Trigger: CTGTTTCCTAGTCTTATACACGTGTGGACTTGACAAGATAATGAGATCTTTCTTTTGGCCTTTGCTTAAAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212939.2