RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CKAP5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040549

Ensembl transcript IDs: ENSMUST00000046769.16, ENSMUST00000099716.11, ENSMUST00000111337.3, ENSMUST00000111338.10

Found 826 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGCATGTGCAGACTTGAGGCACCACTGCTCCTCCCATCTGCAGTCTaGTACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCT +
Preference number: 1 (lower is better)
Translates to: SMCRLEAPLLLPSAV*YIQPVCVQWPAAAA
Trigger: AGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCTCAAGTCTGCACATGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
3UTR GCA 90 bp AGTCAGTCTTCTAGAAGCAGAGCATGTGCAGACTTGAGGCACCACTaGTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTAC +
Preference number: 1 (lower is better)
Translates to: SQSSRSRACADLRHH*SSHLQSDTYNQFVY
Trigger: GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCTCAAGTCTGCACATGCTCTGCTTCTAGAAGACTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
3UTR CAA 90 bp GGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTaGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTC +
Preference number: 2 (lower is better)
Translates to: GTTAPPICSLIHTTS*CTMACSGRFTLQGF
Trigger: GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
3UTR-3UTR GCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGGACTTGAGGCACCACTaGTCCTCCCATCTGCAGTCT +
Preference number: 2 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKDLRHH*SSHLQS
Trigger: AGACTGCAGATGGGAGGAGCAGTGGTGCCTCAAGTC...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
3UTR CAA 90 bp AAGCTAATCCACAGTCAGTCTTCTAGAAGCAGAGCATGTGCAGACTaGAGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAAC +
Preference number: 2 (lower is better)
Translates to: KLIHSQSSRSRACAD*RHHCSSHLQSDTYN
Trigger: GTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCTCAAGTCTGCACATGCTCTGCTTCTAGAAGACTGACTGTGGATTAGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
3UTR-3UTR GCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGATTGTGTACAATGGCCTaGAGCGGCCGCTTCACACTA +
Preference number: 2 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRLCTMA*SGRFTL
Trigger: TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAA...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
3UTR-3UTR TCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGGAACCTACTCTGAGCTaGGGGAGCAGCTGTTTAAAG +
Preference number: 2 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKEPTLS*GSSCLK
Trigger: CTTTAAACAGCTGCTCCCTCAGCTCAGAGTAGGTTC...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
3UTR-3UTR TCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAATATGGAACCTACTCTaGGCTGAGGGAGCAGCTGTT +
Preference number: 2 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEIWNLL*AEGAAV
Trigger: AACAGCTGCTCCCTCAGCTCAGAGTAGGTTCCATAT...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
3UTR-3UTR TCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAAGAGTTTCTAATGGCTaGAAGCTAGGAAAAATTAGG +
Preference number: 2 (lower is better)
Translates to: LSHAMHSYRIQCPFRATERVSNG*KLGKIR
Trigger: CCTAATTTTTCCTAGCTTTCAGCCATTAGAAACTCT...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
3UTR TCA 72 bp ACAGTCAGTCTTCTAGAAGCAGAGCATGTGCAGACTTaGGGCACCACTGCTCCTCCCATCTGCAGTCTGATA +
Preference number: 3 (lower is better)
Translates to: TVSLLEAEHVQT*GTTAPPICSLI
Trigger: TATCAGACTGCAGATGGGAGGAGCAGTGGTGCCTCAAGTCTGCACATGCTCTGCTTCTAGAAGACTGACTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
3UTR GCA 72 bp TCTAGAAGCAGAGCATGTGCAGACTTGAGGCACCACTaGTCCTCCCATCTGCAGTCTGATACATACAACCAG +
Preference number: 3 (lower is better)
Translates to: SRSRACADLRHH*SSHLQSDTYNQ
Trigger: CTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCTCAAGTCTGCACATGCTCTGCTTCTAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
3UTR TCA 72 bp AGACTTGAGGCACCACTGCTCCTCCCATCTGCAGTCTaGTACATACAACCAGTTTGTGTACAATGGCCTGCA +
Preference number: 3 (lower is better)
Translates to: RLEAPLLLPSAV*YIQPVCVQWPA
Trigger: TGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCTCAAGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGAGGTCTGAGTGCTGGTaGTGTTCCCGGGACTCCCGG +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRRSECW*CSRDSR
Trigger: CCGGGAGTCCCGGGAACAGCACCAGCACTCAGACCT...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCAGGTCTGAGTGCTGGTaGTGTTCCCGGGACTCCCGG +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFRSECW*CSRDSR
Trigger: CCGGGAGTCCCGGGAACAGCACCAGCACTCAGACCT...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCGAATCCAGGTCTGAGTaGTGGTGCTGTTCCCGGGAC +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFESRSE*WCCSRD
Trigger: GTCCCGGGAACAGCACCAGCACTCAGACCTGGATTC...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCATCACCACCCCCTTCTaGATCTCCACCAGCAGACTG +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFITTPF*ISTSRL
Trigger: CAGTCTGCTGGTGGAGATGCAGAAGGGGGTGGTGAT...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCGGCCTGTTTCACAGGTaGAGCAGAGGGTCTCTTTGC +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFGLFHR*SRGSLC
Trigger: GCAAAGAGACCCTCTGCTGCACCTGTGAAACAGGCC...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAAGGTCTGAGTGCTGGTaGTGTTCCCGGGACTCCCGG +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTRSECW*CSRDSR
Trigger: CCGGGAGTCCCGGGAACAGCACCAGCACTCAGACCT...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCCTAGGGAGGACACTGTaGTTGTGGGGGTGGGCACAC +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFLGRTL*LWGWAH
Trigger: GTGTGCCCACCCCCACAAGCACAGTGTCCTCCCTAG...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCAGGCTGGGTTTTGGCTaGAGCCGACCCTCCCATTGG +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFRLGFG*SRPSHW
Trigger: CCAATGGGAGGGTCGGCTCCAGCCAAAACCCAGCCT...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCCCTGCAGAGTGGGTCTaGTTGGAATCCAGGTCTGAG +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFPAEWV*LESRSE
Trigger: CTCAGACCTGGATTCCAACCAGACCCACTCTGCAGG...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCGCTAGCAGGCTGTCCTaGAGTAAAACAAGCAGGGCA +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFASRLS*SKTSRA
Trigger: TGCCCTGCTTGTTTTACTTCAGGACAGCCTGCTAGC...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCGCGAACCATCTGGGCTaGTTCAGGATGCCCACTCAG +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFANHLG*FRMPTQ
Trigger: CTGAGTGGGCATCCTGAAGCAGCCCAGATGGTTCGC...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGAGGTCTGAGTGCTGGTaGTGTTCCCGGGACTCCCGG +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLRSECW*CSRDSR
Trigger: CCGGGAGTCCCGGGAACAGCACCAGCACTCAGACCT...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGAGGCTGGGTTTTGGCTaGAGCCGACCCTCCCATTGG +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQRLGFG*SRPSHW
Trigger: CCAATGGGAGGGTCGGCTCCAGCCAAAACCCAGCCT...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCTCTCGGCGAACCATCTaGGCTGCTTCAGGATGCCCA +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFSRRTI*AASGCP
Trigger: TGGGCATCCTGAAGCAGCCCAGATGGTTCGCCGAGA...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTCTTTCAGTACTCCAGTaGAGGCCTCCCGGGCCAAGC +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTLSVLQ*RPPGPS
Trigger: GCTTGGCCCGGGAGGCCTCCACTGGAGTACTGAAAG...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACTTTCAGTACTCCAGTaGAGGCCTCCCGGGCCAAGC +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLLSVLQ*RPPGPS
Trigger: GCTTGGCCCGGGAGGCCTCCACTGGAGTACTGAAAG...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCGAGCAAAGAGGTCAGTaGAGGCCGGTCATCTTGCTT +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFEQRGQ*RPVILL
Trigger: AAGCAAGATGACCGGCCTCCACTGACCTCTTTGCTC...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACTCCAGGTCTGAGTGCTaGTGCTGTTCCCGGGACTCC +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYSRSEC*CCSRDS
Trigger: GGAGTCCCGGGAACAGCACCAGCACTCAGACCTGGA...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCCAGAGTGGGTCTGGTTaGAATCCAGGTCTGAGTGCT +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFQSGSG*NPGLSA
Trigger: AGCACTCAGACCTGGATTCCAACCAGACCCACTCTG...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGACTCCCGGAGCTGTaGGAGCTTGCTATGGAGCAT +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTGLPEL*ELAMEH
Trigger: ATGCTCCATAGCAAGCTCTCACAGCTCCGGGAGTCC...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAGGACTCCCGGAGCTGTaGGAGCTTGCTATGGAGCAT +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLGLPEL*ELAMEH
Trigger: ATGCTCCATAGCAAGCTCTCACAGCTCCGGGAGTCC...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTGTTGGAATCCAGGTCTaGGTGCTGGTGCTGTTCCCG +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTVGIQV*VLVLFP
Trigger: CGGGAACAGCACCAGCACTCAGACCTGGATTCCAAC...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCGGCCTGTTTCACAGGTaGAGCAGAGGGTCTCTTTGC +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFGLFHR*SRGSLC
Trigger: GCAAAGAGACCCTCTGCTGCACCTGTGAAACAGGCC...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGCGAACCATCTGGGCTaGTTCAGGATGCCCACTCAG +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTANHLG*FRMPTQ
Trigger: CTGAGTGGGCATCCTGAAGCAGCCCAGATGGTTCGC...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTGCGAACCATCTGGGCTaGTTCAGGATGCCCACTCAG +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTANHLG*FRMPTQ
Trigger: CTGAGTGGGCATCCTGAAGCAGCCCAGATGGTTCGC...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGAATCCAGGTCTGAGTaGTGGTGCTGTTCCCGGGAC +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTESRSE*WCCSRD
Trigger: GTCCCGGGAACAGCACCAGCACTCAGACCTGGATTC...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGAATCCAGGTCTGAGTaGTGGTGCTGTTCCCGGGAC +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQESRSE*WCCSRD
Trigger: GTCCCGGGAACAGCACCAGCACTCAGACCTGGATTC...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCGGAGGTCATGGTTCCTaGAGAGTGGGTCTGGTTGGA +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFGGHGS*RVGLVG
Trigger: TCCAACCAGACCCACTCTGCAGGAACCATGACCTCC...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGTCTCGGCGAACCATCTaGGCTGCTTCAGGATGCCCA +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQSRRTI*AASGCP
Trigger: TGGGCATCCTGAAGCAGCCCAGATGGTTCGCCGAGA...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACATCTCGGCGAACCATCTaGGCTGCTTCAGGATGCCCA +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTSRRTI*AASGCP
Trigger: TGGGCATCCTGAAGCAGCCCAGATGGTTCGCCGAGA...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCTTTCAGTACTCCAGTaGAGGCCTCCCGGGCCAAGC +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLLSVLQ*RPPGPS
Trigger: GCTTGGCCCGGGAGGCCTCCACTGGAGTACTGAAAG...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCAGGAGGAGGAGGTCATaGTTCCTGCAGAGTGGGTCT +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFRRRRS*FLQSGS
Trigger: AGACCCACTCTGCAGGAACCATGACCTCCTCCTCCT...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGAGGAGGAGGAGGTCATaGTTCCTGCAGAGTGGGTCT +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRRRRRS*FLQSGS
Trigger: AGACCCACTCTGCAGGAACCATGACCTCCTCCTCCT...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
3UTR CAA 72 bp GCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTaGTGTACAATGGCCTGCAGCGGCCGCTTCACACTA +
Preference number: 4 (lower is better)
Translates to: APPICSLIHTTS*CTMACSGRFTL
Trigger: TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
3UTR CAA 72 bp CACAGTCAGTCTTCTAGAAGCAGAGCATGTGCAGACTaGAGGCACCACTGCTCCTCCCATCTGCAGTCTGAT +
Preference number: 4 (lower is better)
Translates to: HSQSSRSRACAD*RHHCSSHLQSD
Trigger: ATCAGACTGCAGATGGGAGGAGCAGTGGTGCCTCAAGTCTGCACATGCTCTGCTTCTAGAAGACTGACTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCGTCCAAATTTCTTTCTaGGCCCAACAGCTAAGCCAG +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFVQISF*AQQLSQ
Trigger: CTGGCTTAGCTGTTGGGCTCAGAAAGAAATTTGGAC...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGAGAGGGTCTCTTTGCTaGCCGCTTTATCCTCTCCTC +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRRGSLC*PLYPLL
Trigger: GAGGAGAGGATAAAGCGGTCAGCAAAGAGACCCTCT...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCCTTGGATGCTTGTGTTaGTGTCACCACTGGCTACTT +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFLGCLC*CHHWLL
Trigger: AAGTAGCCAGTGGTGACATCAACACAAGCATCCAAG...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACATCACCACCCCCTTCTaGATCTCCACCAGCAGACTG +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYITTPF*ISTSRL
Trigger: CAGTCTGCTGGTGGAGATGCAGAAGGGGGTGGTGAT...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGATCACCACCCCCTTCTaGATCTCCACCAGCAGACTG +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQITTPF*ISTSRL
Trigger: CAGTCTGCTGGTGGAGATGCAGAAGGGGGTGGTGAT...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAATCACCACCCCCTTCTaGATCTCCACCAGCAGACTG +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLITTPF*ISTSRL
Trigger: CAGTCTGCTGGTGGAGATGCAGAAGGGGGTGGTGAT...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCGATCAACAACATCATTaGCCCCTTCACCTGGTTCCT +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFDQQHH*PLHLVP
Trigger: AGGAACCAGGTGAAGGGGGCAATGATGTTGTTGATC...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCTGCACCCATGGCTACTaGCAGTTGCTGAAGGATATT +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFCTHGY*QLLKDI
Trigger: AATATCCTTCAGCAACTGGCAGTAGCCATGGGTGCA...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCCATGCCAGTTTGTTCTaGCCAAGCATTCACAGTTGC +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFHASLF*PSIHSC
Trigger: GCAACTGTGAATGCTTGGGCAGAACAAACTGGCATG...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCCCAGCCATTCTTTCATaGCAGTTTGTTCTGCCCAAG +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFPAILS*QFVLPK
Trigger: CTTGGGCAGAACAAACTGGCATGAAAGAATGGCTGG...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCGTCTGGTCCATACTATaGTTCATCATCCGACACAGG +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFVWSIL*FIIRHR
Trigger: CCTGTGTCGGATGATGAAGCATAGTATGGACCAGAC...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCGGCAACTGGAGGAATTaGTGGTTTGGAGAGCAAAGA +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFGNWRN*WFGEQR
Trigger: TCTTTGCTCTCCAAACCAGCAATTCCTCCAGTTGCC...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTGGAGGTCATGGTTCCTaGAGAGTGGGTCTGGTTGGA +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTGGHGS*RVGLVG
Trigger: TCCAACCAGACCCACTCTGCAGGAACCATGACCTCC...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGCTAGGGAGGACACTGTaGTTGTGGGGGTGGGCACAC +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKLGRTL*LWGWAH
Trigger: GTGTGCCCACCCCCACAAGCACAGTGTCCTCCCTAG...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGACTAGGGAGGACACTGTaGTTGTGGGGGTGGGCACAC +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRLGRTL*LWGWAH
Trigger: GTGTGCCCACCCCCACAAGCACAGTGTCCTCCCTAG...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAGCAATTCCCCTCGTTaGAGCGGGAGGACTTTGTCC +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYSNSPR*SGRTLS
Trigger: GGACAAAGTCCTCCCGCTCCAACGAGGGGAATTGCT...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGACTTTCAGTACTCCAGTaGAGGCCTCCCGGGCCAAGC +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRLSVLQ*RPPGPS
Trigger: GCTTGGCCCGGGAGGCCTCCACTGGAGTACTGAAAG...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCGACTTGCTCCCAGTCTaGTCCATACTATGCTTCATC +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFDLLPV*SILCFI
Trigger: GATGAAGCATAGTATGGACCAGACTGGGAGCAAGTC...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCGAGCAAAGAGGTCAGTaGAGGCCGGTCATCTTGCTT +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFEQRGQ*RPVILL
Trigger: AAGCAAGATGACCGGCCTCCACTGACCTCTTTGCTC...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGCAGAGTGGGTCTGGTTaGAATCCAGGTCTGAGTGCT +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRQSGSG*NPGLSA
Trigger: AGCACTCAGACCTGGATTCCAACCAGACCCACTCTG...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTCCTGCAGAGTGGGTCTaGTTGGAATCCAGGTCTGAG +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTPAEWV*LESRSE
Trigger: CTCAGACCTGGATTCCAACCAGACCCACTCTGCAGG...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACACCTGCAGAGTGGGTCTaGTTGGAATCCAGGTCTGAG +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTPAEWV*LESRSE
Trigger: CTCAGACCTGGATTCCAACCAGACCCACTCTGCAGG...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGCTGTTACAATGGTGTTaGGGGCAGCATTCCGTACAG +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRLLQWC*GQHSVQ
Trigger: CTGTACGGAATGCTGCCCTCAACACCATTGTAACAG...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCCTGTTACAATGGTGTTaGGGGCAGCATTCCGTACAG +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFLLQWC*GQHSVQ
Trigger: CTGTACGGAATGCTGCCCTCAACACCATTGTAACAG...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCATCAGTTTGAACACCTaGTCTCCATGCACGTTGTAC +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFISLNT*SPCTLY
Trigger: GTACAACGTGCATGGAGATCAGGTGTTCAAACTGAT...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAAGAGGGTCTCTTTGCTaGCCGCTTTATCCTCTCCTC +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTRGSLC*PLYPLL
Trigger: GAGGAGAGGATAAAGCGGTCAGCAAAGAGACCCTCT...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGCTAGCAGGCTGTCCTaGAGTAAAACAAGCAGGGCA +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTASRLS*SKTSRA
Trigger: TGCCCTGCTTGTTTTACTTCAGGACAGCCTGCTAGC...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGGTTGGAATCCAGGTCTaGGTGCTGGTGCTGTTCCCG +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKVGIQV*VLVLFP
Trigger: CGGGAACAGCACCAGCACTCAGACCTGGATTCCAAC...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGCATGTGACCTCCATCTaGGGGGAAATGCCTGTTGAA +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRHVTSI*GEMPVE
Trigger: TTCAACAGGCATTTCCCCTCAGATGGAGGTCACATG...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTATGCTGCCTGATGTTTaGACCCATGGCTACTGCCAG +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTMLPDV*THGYCQ
Trigger: CTGGCAGTAGCCATGGGTGCAAACATCAGGCAGCAT...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACATGCTGCCTGATGTTTaGACCCATGGCTACTGCCAG +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYMLPDV*THGYCQ
Trigger: CTGGCAGTAGCCATGGGTGCAAACATCAGGCAGCAT...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGGGCCTGTTTCACAGGTaGAGCAGAGGGTCTCTTTGC +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLGLFHR*SRGSLC
Trigger: GCAAAGAGACCCTCTGCTGCACCTGTGAAACAGGCC...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGGCGAACCATCTGGGCTaGTTCAGGATGCCCACTCAG +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKANHLG*FRMPTQ
Trigger: CTGAGTGGGCATCCTGAAGCAGCCCAGATGGTTCGC...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCTTTCCTTATCAGACTTaGTCCCAGTCTGGTCCATAC +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFFPYQT*SQSGPY
Trigger: GTATGGACCAGACTGGGAGCAAGTCTGATAAGGAAA...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGGCTGGGTTTTGGCTaGAGCCGACCCTCCCATTGG +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYRLGFG*SRPSHW
Trigger: CCAATGGGAGGGTCGGCTCCAGCCAAAACCCAGCCT...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAAGGCTGGGTTTTGGCTaGAGCCGACCCTCCCATTGG +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATERLGFG*SRPSHW
Trigger: CCAATGGGAGGGTCGGCTCCAGCCAAAACCCAGCCT...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCGTACACTCTTTGCTTTaGAAGAAACGCCTGGAGCTT +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFVHSLL*KKRLEL
Trigger: AAGCTCCAGGCGTTTCTTCCAAAGCAAAGAGTGTAC...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCAGGGGAACATTTTGCTaGCTGGGTAGACAAGGCACA +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFRGTFC*LGRQGT
Trigger: TGTGCCTTGTCTACCCAGCCAGCAAAATGTTCCCCT...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGAGCAAAGAGGTCAGTaGAGGCCGGTCATCTTGCTT +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQEQRGQ*RPVILL
Trigger: AAGCAAGATGACCGGCCTCCACTGACCTCTTTGCTC...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTGAGCAAAGAGGTCAGTaGAGGCCGGTCATCTTGCTT +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTEQRGQ*RPVILL
Trigger: AAGCAAGATGACCGGCCTCCACTGACCTCTTTGCTC...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACTCCAGGTCTGAGTGCTaGTGCTGTTCCCGGGACTCC +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYSRSEC*CCSRDS
Trigger: GGAGTCCCGGGAACAGCACCAGCACTCAGACCTGGA...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAATCCAGGTCTGAGTGCTaGTGCTGTTCCCGGGACTCC +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATESRSEC*CCSRDS
Trigger: GGAGTCCCGGGAACAGCACCAGCACTCAGACCTGGA...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACATGGTTCCTGCAGAGTaGGTCTGGTTGGAATCCAGG +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYMVPAE*VWLESR
Trigger: CCTGGATTCCAACCAGACCCACTCTGCAGGAACCAT...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCCACCTGTTGGCAGCTTaGCCCACTCTTCTTCTAATT +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFHLLAA*PTLLLI
Trigger: AATTAGAAGAAGAGTGGGTCAAGCTGCCAACAGGTG...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGCACCTGTTGGCAGCTTaGCCCACTCTTCTTCTAATT +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRHLLAA*PTLLLI
Trigger: AATTAGAAGAAGAGTGGGTCAAGCTGCCAACAGGTG...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGTCCAAATTTCTTTCTaGGCCCAACAGCTAAGCCAG +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRVQISF*AQQLSQ
Trigger: CTGGCTTAGCTGTTGGGCTCAGAAAGAAATTTGGAC...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGCTACTGCCAGTTGCTaGAGGATATTCAGTGTCTGC +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQATASC*RIFSVC
Trigger: GCAGACACTGAATATCCTTCAGCAACTGGCAGTAGC...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGCTACTGCCAGTTGCTaGAGGATATTCAGTGTCTGC +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTATASC*RIFSVC
Trigger: GCAGACACTGAATATCCTTCAGCAACTGGCAGTAGC...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGCTGTTACAATGGTGTTaGGGGCAGCATTCCGTACAG +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQLLQWC*GQHSVQ
Trigger: CTGTACGGAATGCTGCCCTCAACACCATTGTAACAG...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACTGTTACAATGGTGTTaGGGGCAGCATTCCGTACAG +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLLLQWC*GQHSVQ
Trigger: CTGTACGGAATGCTGCCCTCAACACCATTGTAACAG...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCGATATTGGTCTGGTCTaGTTTCTCCAAAACCTTCAC +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFDIGLV*FLQNLH
Trigger: GTGAAGGTTTTGGAGAAATCAGACCAGACCAATATC...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCCTTCATAACAAGCTCTaGGAATTTGGGAGAACTAGC +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFLHNKL*EFGRTS
Trigger: GCTAGTTCTCCCAAATTCTCAGAGCTTGTTATGAAG...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGTTGGAATCCAGGTCTaGGTGCTGGTGCTGTTCCCG +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEVGIQV*VLVLFP
Trigger: CGGGAACAGCACCAGCACTCAGACCTGGATTCCAAC...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGAGGGGAAATGCCTGTTaGAGTAGGAATCCGGCCTTT +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQRGNAC*SRNPAF
Trigger: AAAGGCCGGATTCCTACTTCAACAGGCATTTCCCCT...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAAGGGGAAATGCCTGTTaGAGTAGGAATCCGGCCTTT +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTRGNAC*SRNPAF
Trigger: AAAGGCCGGATTCCTACTTCAACAGGCATTTCCCCT...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGATCTGCGTAATCGCCTaGTTCCAGCTTGGGGTTTTT +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRICVIA*FQLGVF
Trigger: AAAAACCCCAAGCTGGAAGCAGGCGATTACGCAGAT...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCACGCTTCAGCTATTaGTGTCATGGCTTCTTTTGC +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRARFSY*CHGFFC
Trigger: GCAAAAGAAGCCATGACAGCAATAGCTGAAGCGTGC...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCGATCAACAACATCATTaGCCCCTTCACCTGGTTCCT +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFDQQHH*PLHLVP
Trigger: AGGAACCAGGTGAAGGGGGCAATGATGTTGTTGATC...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGATCAACAACATCATTaGCCCCTTCACCTGGTTCCT +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRDQQHH*PLHLVP
Trigger: AGGAACCAGGTGAAGGGGGCAATGATGTTGTTGATC...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGATGCTGCCTGATGTTTaGACCCATGGCTACTGCCAG +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLMLPDV*THGYCQ
Trigger: CTGGCAGTAGCCATGGGTGCAAACATCAGGCAGCAT...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACCCAGGTTCTTTACATaGTGCCTGATGTTTGCACCC +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLPRFFT*CLMFAP
Trigger: GGGTGCAAACATCAGGCAGCATGTAAAGAACCTGGG...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACACCCAGGTTCTTTACATaGTGCCTGATGTTTGCACCC +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTPRFFT*CLMFAP
Trigger: GGGTGCAAACATCAGGCAGCATGTAAAGAACCTGGG...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACCATCCCAGAAGCTCTTaGCTCAGGAAGGGATTTTCC +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYHPRSS*LRKGFS
Trigger: GGAAAATCCCTTCCTGAGGCAAGAGCTTCTGGGATG...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCGGGGATAAAGGACGATaGTTCATTCTCAGTAAGATG +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFGDKGR*FILSKM
Trigger: CATCTTACTGAGAATGAAGCATCGTCCTTTATCCCC...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCTCAGCTTTGTCTTCCTaGCTCAGGACCTCATCAATC +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFSALSS*LRTSSI
Trigger: GATTGATGAGGTCCTGAGGCAGGAAGACAAAGCTGA...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCGTCTGGTCCATACTATaGTTCATCATCCGACACAGG +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFVWSIL*FIIRHR
Trigger: CCTGTGTCGGATGATGAAGCATAGTATGGACCAGAC...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGGCAACTGGAGGAATTaGTGGTTTGGAGAGCAAAGA +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRGNWRN*WFGEQR
Trigger: TCTTTGCTCTCCAAACCAGCAATTCCTCCAGTTGCC...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGAATCCAGGTCTGAGTaGTGGTGCTGTTCCCGGGAC +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEESRSE*WCCSRD
Trigger: GTCCCGGGAACAGCACCAGCACTCAGACCTGGATTC...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAGGAGGTCATGGTTCCTaGAGAGTGGGTCTGGTTGGA +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRGGHGS*RVGLVG
Trigger: TCCAACCAGACCCACTCTGCAGGAACCATGACCTCC...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCTAGTTCTTGTTaGGAACGCAGAAACCGACTG +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRASSSC*ERRNRL
Trigger: CAGTCGGTTTCTGCGTTCCCAACAAGAACTAGAAGC...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCAGTCTTTGGGAAGTTTaGAAAGGATCTCTACCGCAT +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFSLWEV*KGSLPH
Trigger: ATGCGGTAGAGATCCTTTCCAAACTTCCCAAAGACT...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGCGCCTGCTTCCAGCTTaGGGTTTTTCACTAGTACTT +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRRLLPA*GFSLVL
Trigger: AAGTACTAGTGAAAAACCCCAAGCTGGAAGCAGGCG...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCAGTTCAACAGCCTTTTaGAATTCTTCCATACAGGCC +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFSSTAF*NSSIQA
Trigger: GGCCTGTATGGAAGAATTCCAAAAGGCTGTTGAACT...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGAATTCTGCATCTATCTaGGATAGGAGGGCAGGCTTC +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRNSASI*DRRAGF
Trigger: GAAGCCTGCCCTCCTATCCCAGATAGATGCAGAATT...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCACCCTTCAAGGCAGTTaGAAGTTCACCTATATTTGG +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFTLQGS*KFTYIW
Trigger: CCAAATATAGGTGAACTTCCAACTGCCTTGAAGGGT...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACATGCAGCAGGCTTGGATaGCATGTTAGCTTTGGCCTT +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTCSRLG*HVSFGL
Trigger: AAGGCCAAAGCTAACATGCCATCCAAGCCTGCTGCA...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAGAACATTTTGCTGGCTaGGTAGACAAGGCACATCCG +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLEHFAG*VDKAHP
Trigger: CGGATGTGCCTTGTCTACCCAGCCAGCAAAATGTTC...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGAACATTTTGCTGGCTaGGTAGACAAGGCACATCCG +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTEHFAG*VDKAHP
Trigger: CGGATGTGCCTTGTCTACCCAGCCAGCAAAATGTTC...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCGGCTTTTCCTGGGGTTaGCTGACAAACATTCATACC +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFGFSWG*LTNIHT
Trigger: GGTATGAATGTTTGTCAGCCAACCCCAGGAAAAGCC...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACTCTCGGCGAACCATCTaGGCTGCTTCAGGATGCCCA +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYSRRTI*AASGCP
Trigger: TGGGCATCCTGAAGCAGCCCAGATGGTTCGCCGAGA...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCCTGAGGATATTGGTCTaGTCTGATTTCTCCAAAACC +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFLRILV*SDFSKT
Trigger: GGTTTTGGAGAAATCAGACCAGACCAATATCCTCAG...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCGAGGAATTGCTGGTTTaGAGAGCAAAGAGGTCAGTG +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFEELLV*RAKRSV
Trigger: CACTGACCTCTTTGCTCTCCAAACCAGCAATTCCTC...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACATATGGAGCATGTCTGTaGAGGAGGCAACTGGAGGAA +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTYGACL*RRQLEE
Trigger: TTCCTCCAGTTGCCTCCTCCACAGACATGCTCCATA...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTATATGGAGCATGTCTGTaGAGGAGGCAACTGGAGGAA +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLYGACL*RRQLEE
Trigger: TTCCTCCAGTTGCCTCCTCCACAGACATGCTCCATA...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGTATGGAGCATGTCTGTaGAGGAGGCAACTGGAGGAA +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQYGACL*RRQLEE
Trigger: TTCCTCCAGTTGCCTCCTCCACAGACATGCTCCATA...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTTATGGAGCATGTCTGTaGAGGAGGCAACTGGAGGAA +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTYGACL*RRQLEE
Trigger: TTCCTCCAGTTGCCTCCTCCACAGACATGCTCCATA...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTATGTGAGAGCTTGCTATaGAGCATGTCTGTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLCESLL*SMSVEE
Trigger: CTCCTCCACAGACATGCTCCATAGCAAGCTCTCACA...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACTGTGAGAGCTTGCTATaGAGCATGTCTGTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYCESLL*SMSVEE
Trigger: CTCCTCCACAGACATGCTCCATAGCAAGCTCTCACA...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTTGTGAGAGCTTGCTATaGAGCATGTCTGTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTCESLL*SMSVEE
Trigger: CTCCTCCACAGACATGCTCCATAGCAAGCTCTCACA...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGAGTGGGTCTGGTTaGAATCCAGGTCTGAGTGCT +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLQSGSG*NPGLSA
Trigger: AGCACTCAGACCTGGATTCCAACCAGACCCACTCTG...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGATGGTTCCTGCAGAGTaGGTCTGGTTGGAATCCAGG +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLMVPAE*VWLESR
Trigger: CCTGGATTCCAACCAGACCCACTCTGCAGGAACCAT...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGGAGGAGGAGGTCATaGTTCCTGCAGAGTGGGTCT +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRRRRRS*FLQSGS
Trigger: AGACCCACTCTGCAGGAACCATGACCTCCTCCTCCT...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGCACCTGTTGGCAGCTTaGCCCACTCTTCTTCTAATT +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQHLLAA*PTLLLI
Trigger: AATTAGAAGAAGAGTGGGTCAAGCTGCCAACAGGTG...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGCCAAAGCTACCAACATaGCATTGGTGTCCTTTCCAA +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRPKLPT*HWCPFQ
Trigger: TTGGAAAGGACACCAATGTCATGTTGGTAGCTTTGG...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGTCCAAATTTCTTTCTaGGCCCAACAGCTAAGCCAG +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTVQISF*AQQLSQ
Trigger: CTGGCTTAGCTGTTGGGCTCAGAAAGAAATTTGGAC...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGTAGAGGAAGTGCAGTaGCGAAAGCTTCTTGCAATA +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRVEEVQ*RKLLAI
Trigger: TATTGCAAGAAGCTTTCGTCACTGCACTTCCTCTAC...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGGCTACTGCCAGTTGCTaGAGGATATTCAGTGTCTGC +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLATASC*RIFSVC
Trigger: GCAGACACTGAATATCCTTCAGCAACTGGCAGTAGC...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGAGAGGGTCTCTTTGCTaGCCGCTTTATCCTCTCCTC +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKRGSLC*PLYPLL
Trigger: GAGGAGAGGATAAAGCGGTCAGCAAAGAGACCCTCT...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACTTGGATGCTTGTGTTaGTGTCACCACTGGCTACTT +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLLGCLC*CHHWLL
Trigger: AAGTAGCCAGTGGTGACATCAACACAAGCATCCAAG...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCATGTGACCTCCATCTaGGGGGAAATGCCTGTTGAA +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLHVTSI*GEMPVE
Trigger: TTCAACAGGCATTTCCCCTCAGATGGAGGTCACATG...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGCCAAGCTCTCTATCTaGAATAGCTGTGTCAGAGCT +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTAKLSI*NSCVRA
Trigger: AGCTCTGACACAGCTATTTCAGATAGAGAGCTTGGC...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111337.3
CDS-3UTR GCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAATCTGCGTAATCGCCTaGTTCCAGCTTGGGGTTTTT +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLICVIA*FQLGVF
Trigger: AAAAACCCCAAGCTGGAAGCAGGCGATTACGCAGAT...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTATCTGCGTAATCGCCTaGTTCCAGCTTGGGGTTTTT +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTICVIA*FQLGVF
Trigger: AAAAACCCCAAGCTGGAAGCAGGCGATTACGCAGAT...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCAGTAAGACATTTTGCTaGCAAAGCTACCAACATGAC +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFSKTFC*QSYQHD
Trigger: GTCATGTTGGTAGCTTTGGCAGCAAAATGTCTTACT...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAGGTAGTGAGGAAGATTaGATCAATTGCCTCCTGCAG +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLGSEED*INCLLQ
Trigger: CTGCAGGAGGCAATTGATGCAATCTTCCTCACTACC...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGTAGTGAGGAAGATTaGATCAATTGCCTCCTGCAG +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTGSEED*INCLLQ
Trigger: CTGCAGGAGGCAATTGATGCAATCTTCCTCACTACC...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGTAGTGAGGAAGATTaGATCAATTGCCTCCTGCAG +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQGSEED*INCLLQ
Trigger: CTGCAGGAGGCAATTGATGCAATCTTCCTCACTACC...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTGGTAGTGAGGAAGATTaGATCAATTGCCTCCTGCAG +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTGSEED*INCLLQ
Trigger: CTGCAGGAGGCAATTGATGCAATCTTCCTCACTACC...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACGCACGCTTCAGCTATTaGTGTCATGGCTTCTTTTGC +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYARFSY*CHGFFC
Trigger: GCAAAAGAAGCCATGACAGCAATAGCTGAAGCGTGC...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCAGGTTCTTTACATGCTaGCTGATGTTTGCACCCATG +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFRFFTC*LMFAPM
Trigger: CATGGGTGCAAACATCAGGCAGCATGTAAAGAACCT...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGAGGTTCTTTACATGCTaGCTGATGTTTGCACCCATG +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRRFFTC*LMFAPM
Trigger: CATGGGTGCAAACATCAGGCAGCATGTAAAGAACCT...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCCCAGGTTCTTTACATaGTGCCTGATGTTTGCACCC +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLPRFFT*CLMFAP
Trigger: GGGTGCAAACATCAGGCAGCATGTAAAGAACCTGGG...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTCATGCCAGTTTGTTCTaGCCAAGCATTCACAGTTGC +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTHASLF*PSIHSC
Trigger: GCAACTGTGAATGCTTGGGCAGAACAAACTGGCATG...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGCATGCCAGTTTGTTCTaGCCAAGCATTCACAGTTGC +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQHASLF*PSIHSC
Trigger: GCAACTGTGAATGCTTGGGCAGAACAAACTGGCATG...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACGTCTGGTCCATACTATaGTTCATCATCCGACACAGG +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYVWSIL*FIIRHR
Trigger: CCTGTGTCGGATGATGAAGCATAGTATGGACCAGAC...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTGTCTGGTCCATACTATaGTTCATCATCCGACACAGG +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTVWSIL*FIIRHR
Trigger: CCTGTGTCGGATGATGAAGCATAGTATGGACCAGAC...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCTTTCCTTATCAGACTTaGTCCCAGTCTGGTCCATAC +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFFPYQT*SQSGPY
Trigger: GTATGGACCAGACTGGGAGCAAGTCTGATAAGGAAA...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACGGAGGTCATGGTTCCTaGAGAGTGGGTCTGGTTGGA +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYGGHGS*RVGLVG
Trigger: TCCAACCAGACCCACTCTGCAGGAACCATGACCTCC...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGCTTAGGAGCACCTGTTaGCAGCTTGACCCACTCTTC +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKLRSTC*QLDPLF
Trigger: GAAGAGTGGGTCAAGCTGCCAACAGGTGCTCCTAAG...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACGCTTCTAGTTCTTGTTaGGAACGCAGAAACCGACTG +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYASSSC*ERRNRL
Trigger: CAGTCGGTTTCTGCGTTCCCAACAAGAACTAGAAGC...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGCGCCTGCTTCCAGCTTaGGGTTTTTCACTAGTACTT +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQRLLPA*GFSLVL
Trigger: AAGTACTAGTGAAAAACCCCAAGCTGGAAGCAGGCG...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAAATTCTGCATCTATCTaGGATAGGAGGGCAGGCTTC +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTNSASI*DRRAGF
Trigger: GAAGCCTGCCCTCCTATCCCAGATAGATGCAGAATT...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAATTCTGCATCTATCTaGGATAGGAGGGCAGGCTTC +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTNSASI*DRRAGF
Trigger: GAAGCCTGCCCTCCTATCCCAGATAGATGCAGAATT...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGCAATTCCCCTCGTTaGAGCGGGAGGACTTTGTCC +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYSNSPR*SGRTLS
Trigger: GGACAAAGTCCTCCCGCTCCAACGAGGGGAATTGCT...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGTGCAGCAGGCTTGGATaGCATGTTAGCTTTGGCCTT +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLCSRLG*HVSFGL
Trigger: AAGGCCAAAGCTAACATGCCATCCAAGCCTGCTGCA...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGATCTTCAACAGGTGCTaGTATAGGCTGGGTTTTGGC +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQIFNRC*YRLGFG
Trigger: GCCAAAACCCAGCCTATACCAGCACCTGTTGAAGAT...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCTTAGAACGCTTGTATTaGTGTCGAAAAACCGGAGGG +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFLERLY*CRKTGG
Trigger: CCCTCCGGTTTTTCGACACCAATACAAGCGTTCTAA...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGGAACATTTTGCTGGCTaGGTAGACAAGGCACATCCG +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLEHFAG*VDKAHP
Trigger: CGGATGTGCCTTGTCTACCCAGCCAGCAAAATGTTC...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGAGGGGAACATTTTGCTaGCTGGGTAGACAAGGCACA +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLRGTFC*LGRQGT
Trigger: TGTGCCTTGTCTACCCAGCCAGCAAAATGTTCCCCT...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGCTTTTCCTGGGGTTaGCTGACAAACATTCATACC +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTGFSWG*LTNIHT
Trigger: GGTATGAATGTTTGTCAGCCAACCCCAGGAAAAGCC...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTGACTTGCTCCCAGTCTaGTCCATACTATGCTTCATC +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTDLLPV*SILCFI
Trigger: GATGAAGCATAGTATGGACCAGACTGGGAGCAAGTC...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGACTTGCTCCCAGTCTaGTCCATACTATGCTTCATC +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTDLLPV*SILCFI
Trigger: GATGAAGCATAGTATGGACCAGACTGGGAGCAAGTC...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGACTTGCTCCCAGTCTaGTCCATACTATGCTTCATC +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQDLLPV*SILCFI
Trigger: GATGAAGCATAGTATGGACCAGACTGGGAGCAAGTC...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCTTCCAAGTAGACAGATaGCCCCACTTCTTCTCCATT +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFFQVDR*PHFFSI
Trigger: AATGGAGAAGAAGTGGGGCCATCTGTCTACTTGGAA...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGAGGAATTGCTGGTTTaGAGAGCAAAGAGGTCAGTG +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQEELLV*RAKRSV
Trigger: CACTGACCTCTTTGCTCTCCAAACCAGCAATTCCTC...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAACCTGCAGAGTGGGTCTaGTTGGAATCCAGGTCTGAG +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEPAEWV*LESRSE
Trigger: CTCAGACCTGGATTCCAACCAGACCCACTCTGCAGG...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGATGGTTCCTGCAGAGTaGGTCTGGTTGGAATCCAGG +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKMVPAE*VWLESR
Trigger: CCTGGATTCCAACCAGACCCACTCTGCAGGAACCAT...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAAGGAGGAGGAGGTCATaGTTCCTGCAGAGTGGGTCT +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATERRRRS*FLQSGS
Trigger: AGACCCACTCTGCAGGAACCATGACCTCCTCCTCCT...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCCTATACAGGCCACTATaGTCTTGGGGTTCTTGTTAT +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFLYRPL*SWGSCY
Trigger: ATAACAAGAACCCCAAGATCATAGTGGCCTGTATAG...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTCCAAAGCTACCAACATaGCATTGGTGTCCTTTCCAA +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTPKLPT*HWCPFQ
Trigger: TTGGAAAGGACACCAATGTCATGTTGGTAGCTTTGG...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACCCAAAGCTACCAACATaGCATTGGTGTCCTTTCCAA +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYPKLPT*HWCPFQ
Trigger: TTGGAAAGGACACCAATGTCATGTTGGTAGCTTTGG...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGCCAAAGCTACCAACATaGCATTGGTGTCCTTTCCAA +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQPKLPT*HWCPFQ
Trigger: TTGGAAAGGACACCAATGTCATGTTGGTAGCTTTGG...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCAGGGCTTGTACCACTTaGGGCTTCTTTTCTTTGAAT +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFRACTT*GFFSLN
Trigger: ATTCAAAGAAAAGAAGCCTCAAGTGGTACAAGCCCT...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGTAGAGGAAGTGCAGTaGCGAAAGCTTCTTGCAATA +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQVEEVQ*RKLLAI
Trigger: TATTGCAAGAAGCTTTCGTCACTGCACTTCCTCTAC...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTGTAGAGGAAGTGCAGTaGCGAAAGCTTCTTGCAATA +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTVEEVQ*RKLLAI
Trigger: TATTGCAAGAAGCTTTCGTCACTGCACTTCCTCTAC...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCCTTAGACACCAACTCTaGAGTAATTTTGTCACTGAT +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFLRHQL*SNFVTD
Trigger: ATCAGTGACAAAATTACTTCAGAGTTGGTGTCTAAG...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGGCTACTGCCAGTTGCTaGAGGATATTCAGTGTCTGC +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKATASC*RIFSVC
Trigger: GCAGACACTGAATATCCTTCAGCAACTGGCAGTAGC...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGAGCATGGCCAGTACTTaGTCTTTAGAAGTTGGCTTT +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRSMAST*SLEVGF
Trigger: AAAGCCAACTTCTAAAGATCAAGTACTGGCCATGCT...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCGTGATGCTGGAAATCTaGGTGAAACATTTCATCCTG +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFVMLEI*VKHFIL
Trigger: CAGGATGAAATGTTTCACTCAGATTTCCAGCATCAC...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGTTTTCACTTTCCAAGTaGTCAACCATGACAGCTAGG +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRFSLSK*STMTAR
Trigger: CCTAGCTGTCATGGTTGATCACTTGGAAAGTGAAAA...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAATCAGTTTGAACACCTaGTCTCCATGCACGTTGTAC +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLISLNT*SPCTLY
Trigger: GTACAACGTGCATGGAGATCAGGTGTTCAAACTGAT...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGATTTCCAATCAGTTTaGACACCTGATCTCCATGCA +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRDFQSV*TPDLHA
Trigger: TGCATGGAGATCAGGTGTTCAAACTGATTGGAAATC...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCGATTTCCAATCAGTTTaGACACCTGATCTCCATGCA +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFDFQSV*TPDLHA
Trigger: TGCATGGAGATCAGGTGTTCAAACTGATTGGAAATC...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCGTTGCTATCAGAAACTaGTCAATGTGGCCAGACATA +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFVAIRN*SMWPDI
Trigger: TATGTCTGGCCACATTGATCAGTTTCTGATAGCAAC...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGTTGCTATCAGAAACTaGTCAATGTGGCCAGACATA +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRVAIRN*SMWPDI
Trigger: TATGTCTGGCCACATTGATCAGTTTCTGATAGCAAC...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAAATCCAGCATTAAGGTaGTCAGTCCATGCATCAGGT +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLNPALR*SVHASG
Trigger: ACCTGATGCATGGACTGATCACCTTAATGCTGGATT...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAATCCAGCATTAAGGTaGTCAGTCCATGCATCAGGT +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTNPALR*SVHASG
Trigger: ACCTGATGCATGGACTGATCACCTTAATGCTGGATT...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGATATTGGTCTGGTCTaGTTTCTCCAAAACCTTCAC +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRDIGLV*FLQNLH
Trigger: GTGAAGGTTTTGGAGAAATCAGACCAGACCAATATC...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACGCTAGCAGGCTGTCCTaGAGTAAAACAAGCAGGGCA +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYASRLS*SKTSRA
Trigger: TGCCCTGCTTGTTTTACTTCAGGACAGCCTGCTAGC...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGCTTCATAACAAGCTCTaGGAATTTGGGAGAACTAGC +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRLHNKL*EFGRTS
Trigger: GCTAGTTCTCCCAAATTCTCAGAGCTTGTTATGAAG...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCCAGTAAGACATTTTaGTGCCAAAGCTACCAACAT +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRASKTF*CQSYQH
Trigger: ATGTTGGTAGCTTTGGCAGCAAAATGTCTTACTGGC...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCAAAAGTGATGTCTGCTaGTTGATGGTGGGATTTTTA +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFKSDVC*LMVGFL
Trigger: TAAAAATCCCACCATCAAGCAGCAGACATCACTTTT...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCATAAAAAGTGATGTCTaGTGCTTGATGGTGGGATTT +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFIKSDV*CLMVGF
Trigger: AAATCCCACCATCAAGCAGCAGACATCACTTTTTAT...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACATGCTGCCTGATGTTTaGACCCATGGCTACTGCCAG +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYMLPDV*THGYCQ
Trigger: CTGGCAGTAGCCATGGGTGCAAACATCAGGCAGCAT...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAGGTTCTTTACATGCTaGCTGATGTTTGCACCCATG +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYRFFTC*LMFAPM
Trigger: CATGGGTGCAAACATCAGGCAGCATGTAAAGAACCT...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAAGGTTCTTTACATGCTaGCTGATGTTTGCACCCATG +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTRFFTC*LMFAPM
Trigger: CATGGGTGCAAACATCAGGCAGCATGTAAAGAACCT...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGACCCAGGTTCTTTACATaGTGCCTGATGTTTGCACCC +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRPRFFT*CLMFAP
Trigger: GGGTGCAAACATCAGGCAGCATGTAAAGAACCTGGG...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGGGGATAAAGGACGATaGTTCATTCTCAGTAAGATG +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRGDKGR*FILSKM
Trigger: CATCTTACTGAGAATGAAGCATCGTCCTTTATCCCC...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
48% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAAGGCACTCTGCTCTCTaGTTAGAGTTTTTGGACTTG +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTRHSAL*LEFLDL
Trigger: CAAGTCCAAAAACTCTAAGCAGAGAGCAGAGTGCCT...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACCTCTTCCAGGCACTCTaGTCTCTGCTTAGAGTTTTT +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYLFQAL*SLLRVF
Trigger: AAAAACTCTAAGCAGAGAGCAGAGTGCCTGGAAGAG...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCAGTTTATATTCTGTGTaGGCTGAGGTTTCTCTTCGG +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFSLYSV*AEVSLR
Trigger: CCGAAGAGAAACCTCAGCGCACACAGAATATAAACT...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACCTTAGGAGCACCTGTTaGCAGCTTGACCCACTCTTC +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYLRSTC*QLDPLF
Trigger: GAAGAGTGGGTCAAGCTGCCAACAGGTGCTCCTAAG...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGGCTTCTAGTTCTTGTTaGGAACGCAGAAACCGACTG +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLASSSC*ERRNRL
Trigger: CAGTCGGTTTCTGCGTTCCCAACAAGAACTAGAAGC...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCTTCCAGGTAGAGGCTTaGATTCCTTCTTTTCAGTTG +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFFQVEA*IPSFQL
Trigger: CAACTGAAAAGAAGGAATCCAAGCCTCTACCTGGAA...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGATCTTCAACAGGTGCTaGTATAGGCTGGGTTTTGGC +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLIFNRC*YRLGFG
Trigger: GCCAAAACCCAGCCTATACCAGCACCTGTTGAAGAT...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGTACACTCTTTGCTTTaGAAGAAACGCCTGGAGCTT +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQVHSLL*KKRLEL
Trigger: AAGCTCCAGGCGTTTCTTCCAAAGCAAAGAGTGTAC...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTGTACACTCTTTGCTTTaGAAGAAACGCCTGGAGCTT +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTVHSLL*KKRLEL
Trigger: AAGCTCCAGGCGTTTCTTCCAAAGCAAAGAGTGTAC...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTATTAGAACGCTTGTATTaGTGTCGAAAAACCGGAGGG +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLLERLY*CRKTGG
Trigger: CCCTCCGGTTTTTCGACACCAATACAAGCGTTCTAA...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGTCATCAAGTTTGTGCTaGACAAGCTCTGGCATTTCA +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRSSSLC*TSSGIS
Trigger: TGAAATGCCAGAGCTTGTCCAGCACAAACTTGATGA...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCCATGTCATCAAAATGTaGAGAAACAGCCCGGATCTT +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFHVIKM*RNSPDL
Trigger: AAGATCCGGGCTGTTTCTCCACATTTTGATGACATG...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCTCACCACTGGCTACTTaGGAGATAATGAAATTGATT +
Preference number: 4 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFSPLAT*EIMKLI
Trigger: AATCAATTTCATTATCTCCCAAGTAGCCAGTGGTGA...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGCTGAGGATATTGGTCTaGTCTGATTTCTCCAAAACC +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRLRILV*SDFSKT
Trigger: GGTTTTGGAGAAATCAGACCAGACCAATATCCTCAG...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTTTCCAAGTAGACAGATaGCCCCACTTCTTCTCCATT +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTFQVDR*PHFFSI
Trigger: AATGGAGAAGAAGTGGGGCCATCTGTCTACTTGGAA...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGGAGGAATTGCTGGTTTaGAGAGCAAAGAGGTCAGTG +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLEELLV*RAKRSV
Trigger: CACTGACCTCTTTGCTCTCCAAACCAGCAATTCCTC...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAACTGGAGGAATTGCTaGTTTGGAGAGCAAAGAGGT +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYNWRNC*FGEQRG
Trigger: ACCTCTTTGCTCTCCAAACCAGCAATTCCTCCAGTT...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAACAGAGTGGGTCTGGTTaGAATCCAGGTCTGAGTGCT +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEQSGSG*NPGLSA
Trigger: AGCACTCAGACCTGGATTCCAACCAGACCCACTCTG...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACATGGTTCCTGCAGAGTaGGTCTGGTTGGAATCCAGG +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYMVPAE*VWLESR
Trigger: CCTGGATTCCAACCAGACCCACTCTGCAGGAACCAT...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACATTTACTTACAACACCTaGTACAACCTCTCCCGTTGT +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTFTYNT*YNLSRC
Trigger: ACAACGGGAGAGGTTGTATCAGGTGTTGTAAGTAAA...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAGTCCAAATTTCTTTCTaGGCCCAACAGCTAAGCCAG +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRVQISF*AQQLSQ
Trigger: CTGGCTTAGCTGTTGGGCTCAGAAAGAAATTTGGAC...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAGGGCTTGTACCACTTaGGGCTTCTTTTCTTTGAAT +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTRACTT*GFFSLN
Trigger: ATTCAAAGAAAAGAAGCCTCAAGTGGTACAAGCCCT...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAGGGCTTGTACCACTTaGGGCTTCTTTTCTTTGAAT +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYRACTT*GFFSLN
Trigger: ATTCAAAGAAAAGAAGCCTCAAGTGGTACAAGCCCT...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAAGGGCTTGTACCACTTaGGGCTTCTTTTCTTTGAAT +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLRACTT*GFFSLN
Trigger: ATTCAAAGAAAAGAAGCCTCAAGTGGTACAAGCCCT...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTTCCTGGTTTGGGTCCTaGAACATCTTTTGTGTCTTT +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTSWFGS*NIFCVF
Trigger: AAAGACACAAAAGATGTTTCAGGACCCAAACCAGGA...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAATCAAAGCAACAATGTaGAGCTTCATCTGCATCACC +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTIKATM*SFICIT
Trigger: GGTGATGCAGATGAAGCTTCACATTGTTGCTTTGAT...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTATGTCCCTGCATCTTTTaGAATTCTGCATCTATCTGG +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLCPCIF*NSASIW
Trigger: CCAGATAGATGCAGAATTTCAAAAGATGCAGGGACA...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGCACCAAGATTTTGTTTaGATCATTCAGTCGACCCTT +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRHQDFV*IIQSTL
Trigger: AAGGGTCGACTGAATGATTCAAACAAAATCTTGGTG...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGAGACAGGAATACAGATaGGGAACACAAAGGATAAGA +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRRQEYR*GTQRIR
Trigger: TCTTATCCTTTGTGTTCCTCATCTGTATTCCTGTCT...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGAGCATGGCCAGTACTTaGTCTTTAGAAGTTGGCTTT +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQSMAST*SLEVGF
Trigger: AAAGCCAACTTCTAAAGATCAAGTACTGGCCATGCT...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGTGATGCTGGAAATCTaGGTGAAACATTTCATCCTG +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQVMLEI*VKHFIL
Trigger: CAGGATGAAATGTTTCACTCAGATTTCCAGCATCAC...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTATTTTCACTTTCCAAGTaGTCAACCATGACAGCTAGG +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLFSLSK*STMTAR
Trigger: CCTAGCTGTCATGGTTGATCACTTGGAAAGTGAAAA...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTATCATTCTCAGTAAGATaGTACTCTTCCTCACTCAGC +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLSFSVR*YSSSLS
Trigger: GCTGAGTGAGGAAGAGTATCATCTTACTGAGAATGA...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACTCATTCTCAGTAAGATaGTACTCTTCCTCACTCAGC +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYSFSVR*YSSSLS
Trigger: GCTGAGTGAGGAAGAGTATCATCTTACTGAGAATGA...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGACATCTTTACGAATaGCATCCTTTGGTTCTCCAA +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQGHLYE*HPLVLQ
Trigger: TTGGAGAACCAAAGGATGTCATTCGTAAAGATGTCC...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTGGACATCTTTACGAATaGCATCCTTTGGTTCTCCAA +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTGHLYE*HPLVLQ
Trigger: TTGGAGAACCAAAGGATGTCATTCGTAAAGATGTCC...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACTCTCGGTCTCCTATGTaGATAGCTATCTCCTTTAAG +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYSRSPM*IAISFK
Trigger: CTTAAAGGAGATAGCTATTCACATAGGAGACCGAGA...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACATCTCGGTCTCCTATGTaGATAGCTATCTCCTTTAAG +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTSRSPM*IAISFK
Trigger: CTTAAAGGAGATAGCTATTCACATAGGAGACCGAGA...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTATCTCGGTCTCCTATGTaGATAGCTATCTCCTTTAAG +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLSRSPM*IAISFK
Trigger: CTTAAAGGAGATAGCTATTCACATAGGAGACCGAGA...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGTCTCGGTCTCCTATGTaGATAGCTATCTCCTTTAAG +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQSRSPM*IAISFK
Trigger: CTTAAAGGAGATAGCTATTCACATAGGAGACCGAGA...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACCTTCATAACAAGCTCTaGGAATTTGGGAGAACTAGC +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYLHNKL*EFGRTS
Trigger: GCTAGTTCTCCCAAATTCTCAGAGCTTGTTATGAAG...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCGTGGGCCTCCAATTCTaGCTCATTCTTATTATCAAT +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFVGLQF*LILIIN
Trigger: ATTGATAATAAGAATGAGTCAGAATTGGAGGCCCAC...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAACATGTGACCTCCATCTaGGGGGAAATGCCTGTTGAA +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEHVTSI*GEMPVE
Trigger: TTCAACAGGCATTTCCCCTCAGATGGAGGTCACATG...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGTCCCGTTGTTTTTCCTaGAACATGAGCATTTTCAAC +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRSRCFS*NMSIFN
Trigger: GTTGAAAATGCTCATGTTGCAGGAAAAACAACGGGA...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTATTTCCTTCCAGTTGCTaGTGTCTAGAAGCTGAATAC +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLFPSSC*CLEAEY
Trigger: GTATTCAGCTTCTAGACAGCAGCAACTGGAAGGAAA...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGTTTCCTTCCAGTTGCTaGTGTCTAGAAGCTGAATAC +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQFPSSC*CLEAEY
Trigger: GTATTCAGCTTCTAGACAGCAGCAACTGGAAGGAAA...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGTGCACCCATGGCTACTaGCAGTTGCTGAAGGATATT +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKCTHGY*QLLKDI
Trigger: AATATCCTTCAGCAACTGGCAGTAGCCATGGGTGCA...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGACATGCCAGTTTGTTCTaGCCAAGCATTCACAGTTGC +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRHASLF*PSIHSC
Trigger: GCAACTGTGAATGCTTGGGCAGAACAAACTGGCATG...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGACCAGCCATTCTTTCATaGCAGTTTGTTCTGCCCAAG +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRPAILS*QFVLPK
Trigger: CTTGGGCAGAACAAACTGGCATGAAAGAATGGCTGG...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACCATCCCAGAAGCTCTTaGCTCAGGAAGGGATTTTCC +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYHPRSS*LRKGFS
Trigger: GGAAAATCCCTTCCTGAGGCAAGAGCTTCTGGGATG...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAGAATCTTCAACAGGTaGTGGTATAGGCTGGGTTTT +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTRIFNR*WYRLGF
Trigger: AAAACCCAGCCTATACCAGCACCTGTTGAAGATTCT...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAGAATCTTCAACAGGTaGTGGTATAGGCTGGGTTTT +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYRIFNR*WYRLGF
Trigger: AAAACCCAGCCTATACCAGCACCTGTTGAAGATTCT...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACCCTTTAAGGTGGTTTTaGTTGGCACTTTCTTCCCTT +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYPLRWF*LALSSL
Trigger: AAGGGAAGAAAGTGCCAAGCAAAACCACCTTAAAGG...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGCCTTTAAGGTGGTTTTaGTTGGCACTTTCTTCCCTT +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQPLRWF*LALSSL
Trigger: AAGGGAAGAAAGTGCCAAGCAAAACCACCTTAAAGG...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAGGGGATAAAGGACGATaGTTCATTCTCAGTAAGATG +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLGDKGR*FILSKM
Trigger: CATCTTACTGAGAATGAAGCATCGTCCTTTATCCCC...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGAGGCACTCTGCTCTCTaGTTAGAGTTTTTGGACTTG +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLRHSAL*LEFLDL
Trigger: CAAGTCCAAAAACTCTAAGCAGAGAGCAGAGTGCCT...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAGTTTATATTCTGTGTaGGCTGAGGTTTCTCTTCGG +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTSLYSV*AEVSLR
Trigger: CCGAAGAGAAACCTCAGCGCACACAGAATATAAACT...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTATGTCATCAAGTTTGTaGTGGACAAGCTCTGGCATT +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTMSSSL*WTSSGI
Trigger: AATGCCAGAGCTTGTCCAGCACAAACTTGATGACAT...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAATGTCATCAAGTTTGTaGTGGACAAGCTCTGGCATT +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTMSSSL*WTSSGI
Trigger: AATGCCAGAGCTTGTCCAGCACAAACTTGATGACAT...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGATCAGCTTTGTCTTCCTaGCTCAGGACCTCATCAATC +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRSALSS*LRTSSI
Trigger: GATTGATGAGGTCCTGAGGCAGGAAGACAAAGCTGA...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGGCTTCTAGTTCTTGTTaGGAACGCAGAAACCGACTG +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKASSSC*ERRNRL
Trigger: CAGTCGGTTTCTGCGTTCCCAACAAGAACTAGAAGC...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAATAAGCATCTACCTGTaGTACCTCATCACCATCATC +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLISIYL*YLITII
Trigger: GATGATGGTGATGAGGTACCACAGGTAGATGCTTAT...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTATAAGCATCTACCTGTaGTACCTCATCACCATCATC +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTISIYL*YLITII
Trigger: GATGATGGTGATGAGGTACCACAGGTAGATGCTTAT...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAATAAGCATCTACCTGTaGTACCTCATCACCATCATC +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTISIYL*YLITII
Trigger: GATGATGGTGATGAGGTACCACAGGTAGATGCTTAT...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGAGTCTTTGGGAAGTTTaGAAAGGATCTCTACCGCAT +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQSLWEV*KGSLPH
Trigger: ATGCGGTAGAGATCCTTTCCAAACTTCCCAAAGACT...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGCGCCTGCTTCCAGCTTaGGGTTTTTCACTAGTACTT +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKRLLPA*GFSLVL
Trigger: AAGTACTAGTGAAAAACCCCAAGCTGGAAGCAGGCG...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTTTAACGGTCCTGGTTTaGGTCCTGAAACATCTTTTG +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTLTVLV*VLKHLL
Trigger: CAAAAGATGTTTCAGGACCCAAACCAGGACCGTTAA...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGTTAACGGTCCTGGTTTaGGTCCTGAAACATCTTTTG +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQLTVLV*VLKHLL
Trigger: CAAAAGATGTTTCAGGACCCAAACCAGGACCGTTAA...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTATTAACGGTCCTGGTTTaGGTCCTGAAACATCTTTTG +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLLTVLV*VLKHLL
Trigger: CAAAAGATGTTTCAGGACCCAAACCAGGACCGTTAA...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTTTTACCTTTCTTAGATaGTCCACCAGCCTTAGCAGT +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTFTFLR*STSLSS
Trigger: ACTGCTAAGGCTGGTGGACCATCTAAGAAAGGTAAA...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGAGTTCAACAGCCTTTTaGAATTCTTCCATACAGGCC +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQSSTAF*NSSIQA
Trigger: GGCCTGTATGGAAGAATTCCAAAAGGCTGTTGAACT...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAAGTTCAACAGCCTTTTaGAATTCTTCCATACAGGCC +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLSSTAF*NSSIQA
Trigger: GGCCTGTATGGAAGAATTCCAAAAGGCTGTTGAACT...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGCAGCTATTGCTGTCATaGCTTCTTTTGCATTGTTCC +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQQLLLS*LLLHCS
Trigger: GGAACAATGCAAAAGAAGCCATGACAGCAATAGCTG...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTCAGCTATTGCTGTCATaGCTTCTTTTGCATTGTTCC +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTQLLLS*LLLHCS
Trigger: GGAACAATGCAAAAGAAGCCATGACAGCAATAGCTG...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAATTCTGCATCTATCTaGGATAGGAGGGCAGGCTTC +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRNSASI*DRRAGF
Trigger: GAAGCCTGCCCTCCTATCCCAGATAGATGCAGAATT...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAACCCTTCAAGGCAGTTaGAAGTTCACCTATATTTGG +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTTLQGS*KFTYIW
Trigger: CCAAATATAGGTGAACTTCCAACTGCCTTGAAGGGT...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCATGCATCATAAAGAATaGCAAAGCATCTTGGGCCTT +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFMHHKE*QSILGL
Trigger: AAGGCCCAAGATGCTTTGCCATTCTTTATGATGCAT...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACTGCAGCAGGCTTGGATaGCATGTTAGCTTTGGCCTT +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYCSRLG*HVSFGL
Trigger: AAGGCCAAAGCTAACATGCCATCCAAGCCTGCTGCA...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGTTAGAACGCTTGTATTaGTGTCGAAAAACCGGAGGG +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLLERLY*CRKTGG
Trigger: CCCTCCGGTTTTTCGACACCAATACAAGCGTTCTAA...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGACGAATGACATCCTTTaGTTCTCCAACCTTGAGGAT +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQTNDIL*FSNLED
Trigger: ATCCTCAAGGTTGGAGAACCAAAGGATGTCATTCGT...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACACGAATGACATCCTTTaGTTCTCCAACCTTGAGGAT +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYTNDIL*FSNLED
Trigger: ATCCTCAAGGTTGGAGAACCAAAGGATGTCATTCGT...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAAGGGGAACATTTTGCTaGCTGGGTAGACAAGGCACA +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATERGTFC*LGRQGT
Trigger: TGTGCCTTGTCTACCCAGCCAGCAAAATGTTCCCCT...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGGGCTTTTCCTGGGGTTaGCTGACAAACATTCATACC +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKGFSWG*LTNIHT
Trigger: GGTATGAATGTTTGTCAGCCAACCCCAGGAAAAGCC...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGTCATCTAAATCCAGCTaGAATTCTCGGCGAACCATC +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLSSKSS*NSRRTI
Trigger: GATGGTTCGCCGAGAATTCCAGCTGGATTTAGATGA...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGTCATCAAGTTTGTGCTaGACAAGCTCTGGCATTTCA +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQSSSLC*TSSGIS
Trigger: TGAAATGCCAGAGCTTGTCCAGCACAAACTTGATGA...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACTCATCAAGTTTGTGCTaGACAAGCTCTGGCATTTCA +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYSSSLC*TSSGIS
Trigger: TGAAATGCCAGAGCTTGTCCAGCACAAACTTGATGA...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACCTGAGGATATTGGTCTaGTCTGATTTCTCCAAAACC +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYLRILV*SDFSKT
Trigger: GGTTTTGGAGAAATCAGACCAGACCAATATCCTCAG...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAGAGGAATTGCTGGTTTaGAGAGCAAAGAGGTCAGTG +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYREELLV*RAKRSV
Trigger: CACTGACCTCTTTGCTCTCCAAACCAGCAATTCCTC...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAATGTGAGAGCTTGCTATaGAGCATGTCTGTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATECESLL*SMSVEE
Trigger: CTCCTCCACAGACATGCTCCATAGCAAGCTCTCACA...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACATCTAGTCCTTTCAATTaGACCACTGCATTGGAATCA +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTSSPFN*TTALES
Trigger: TGATTCCAATGCAGTGGTTCAATTGAAAGGACTAGA...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGTCTAGTCCTTTCAATTaGACCACTGCATTGGAATCA +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQSSPFN*TTALES
Trigger: TGATTCCAATGCAGTGGTTCAATTGAAAGGACTAGA...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACTCTAGTCCTTTCAATTaGACCACTGCATTGGAATCA +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYSSPFN*TTALES
Trigger: TGATTCCAATGCAGTGGTTCAATTGAAAGGACTAGA...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGTTTACTTACAACACCTaGTACAACCTCTCCCGTTGT +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLFTYNT*YNLSRC
Trigger: ACAACGGGAGAGGTTGTATCAGGTGTTGTAAGTAAA...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCTATACAGGCCACTATaGTCTTGGGGTTCTTGTTAT +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLLYRPL*SWGSCY
Trigger: ATAACAAGAACCCCAAGATCATAGTGGCCTGTATAG...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGTGATGTCTGCTGCTTaGTGGTGGGATTTTTATTAT +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTVMSAA*WWDFYY
Trigger: ATAATAAAAATCCCACCATCAAGCAGCAGACATCAC...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTTCTTGCAATAAAAAGTaGTGTCTGCTGCTTGATGGT +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTSCNKK*CLLLDG
Trigger: ACCATCAAGCAGCAGACATCACTTTTTATTGCAAGA...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGTCCTGGTTTGGGTCCTaGAACATCTTTTGTGTCTTT +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLSWFGS*NIFCVF
Trigger: AAAGACACAAAAGATGTTTCAGGACCCAAACCAGGA...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGATCAAAGCAACAATGTaGAGCTTCATCTGCATCACC +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLIKATM*SFICIT
Trigger: GGTGATGCAGATGAAGCTTCACATTGTTGCTTTGAT...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACCACCAAGATTTTGTTTaGATCATTCAGTCGACCCTT +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYHQDFV*IIQSTL
Trigger: AAGGGTCGACTGAATGATTCAAACAAAATCTTGGTG...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAGACAGGAATACAGATaGGGAACACAAAGGATAAGA +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTRQEYR*GTQRIR
Trigger: TCTTATCCTTTGTGTTCCTCATCTGTATTCCTGTCT...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTATGCTGGAAATCTGAGTaGAACATTTCATCCTGTAAC +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLCWKSE*NISSCN
Trigger: GTTACAGGATGAAATGTTTCACTCAGATTTCCAGCA...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAATCAGTTTGAACACCTaGTCTCCATGCACGTTGTAC +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRISLNT*SPCTLY
Trigger: GTACAACGTGCATGGAGATCAGGTGTTCAAACTGAT...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGGATTTCCAATCAGTTTaGACACCTGATCTCCATGCA +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLDFQSV*TPDLHA
Trigger: TGCATGGAGATCAGGTGTTCAAACTGATTGGAAATC...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACCTTGGATGCTTGTGTTaGTGTCACCACTGGCTACTT +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYLGCLC*CHHWLL
Trigger: AAGTAGCCAGTGGTGACATCAACACAAGCATCCAAG...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAATCCAGCATTAAGGTaGTCAGTCCATGCATCAGGT +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRNPALR*SVHASG
Trigger: ACCTGATGCATGGACTGATCACCTTAATGCTGGATT...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAGTGGGCCTCCAATTCTaGCTCATTCTTATTATCAAT +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLVGLQF*LILIIN
Trigger: ATTGATAATAAGAATGAGTCAGAATTGGAGGCCCAC...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAATCTGCGTAATCGCCTaGTTCCAGCTTGGGGTTTTT +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEICVIA*FQLGVF
Trigger: AAAAACCCCAAGCTGGAAGCAGGCGATTACGCAGAT...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAAGTAAGACATTTTGCTaGCAAAGCTACCAACATGAC +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLSKTFC*QSYQHD
Trigger: GTCATGTTGGTAGCTTTGGCAGCAAAATGTCTTACT...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGAGTAAGACATTTTGCTaGCAAAGCTACCAACATGAC +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQSKTFC*QSYQHD
Trigger: GTCATGTTGGTAGCTTTGGCAGCAAAATGTCTTACT...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGGCCAGTAAGACATTTTaGTGCCAAAGCTACCAACAT +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLASKTF*CQSYQH
Trigger: ATGTTGGTAGCTTTGGCAGCAAAATGTCTTACTGGC...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGTGGCACAACATGTCCTaGATATTGTCCAAATTTCTT +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRWHNMS*ILSKFL
Trigger: AAGAAATTTGGACAATATGCAGGACATGTTGTGCCA...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCAAAAGTGATGTCTGCTaGTTGATGGTGGGATTTTTA +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFKSDVC*LMVGFL
Trigger: TAAAAATCCCACCATCAAGCAGCAGACATCACTTTT...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGCAGAATCATTGATGTaGTTAAGTAGAGCAGCACAA +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQAESLM*LSRAAQ
Trigger: TTGTGCTGCTCTACTTAAGCACATCAATGATTCTGC...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACGCACGCTTCAGCTATTaGTGTCATGGCTTCTTTTGC +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYARFSY*CHGFFC
Trigger: GCAAAAGAAGCCATGACAGCAATAGCTGAAGCGTGC...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGCACGCTTCAGCTATTaGTGTCATGGCTTCTTTTGC +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEARFSY*CHGFFC
Trigger: GCAAAAGAAGCCATGACAGCAATAGCTGAAGCGTGC...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAATGCACCCATGGCTACTaGCAGTTGCTGAAGGATATT +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATECTHGY*QLLKDI
Trigger: AATATCCTTCAGCAACTGGCAGTAGCCATGGGTGCA...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAACCAGCCATTCTTTCATaGCAGTTTGTTCTGCCCAAG +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEPAILS*QFVLPK
Trigger: CTTGGGCAGAACAAACTGGCATGAAAGAATGGCTGG...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACCCAGCCATTCTTTCATaGCAGTTTGTTCTGCCCAAG +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYPAILS*QFVLPK
Trigger: CTTGGGCAGAACAAACTGGCATGAAAGAATGGCTGG...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGAGAATCTTCAACAGGTaGTGGTATAGGCTGGGTTTT +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLRIFNR*WYRLGF
Trigger: AAAACCCAGCCTATACCAGCACCTGTTGAAGATTCT...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGGCACTCTGCTCTCTaGTTAGAGTTTTTGGACTTG +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRRHSAL*LEFLDL
Trigger: CAAGTCCAAAAACTCTAAGCAGAGAGCAGAGTGCCT...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGACTCTTCCAGGCACTCTaGTCTCTGCTTAGAGTTTTT +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRLFQAL*SLLRVF
Trigger: AAAAACTCTAAGCAGAGAGCAGAGTGCCTGGAAGAG...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACTCAGCTTTGTCTTCCTaGCTCAGGACCTCATCAATC +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYSALSS*LRTSSI
Trigger: GATTGATGAGGTCCTGAGGCAGGAAGACAAAGCTGA...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACGGCAACTGGAGGAATTaGTGGTTTGGAGAGCAAAGA +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYGNWRN*WFGEQR
Trigger: TCTTTGCTCTCCAAACCAGCAATTCCTCCAGTTGCC...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGATAAGCATCTACCTGTaGTACCTCATCACCATCATC +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLISIYL*YLITII
Trigger: GATGATGGTGATGAGGTACCACAGGTAGATGCTTAT...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGAGTCTTTGGGAAGTTTaGAAAGGATCTCTACCGCAT +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLSLWEV*KGSLPH
Trigger: ATGCGGTAGAGATCCTTTCCAAACTTCCCAAAGACT...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACCGCCTGCTTCCAGCTTaGGGTTTTTCACTAGTACTT +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYRLLPA*GFSLVL
Trigger: AAGTACTAGTGAAAAACCCCAAGCTGGAAGCAGGCG...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCTATTGCTGTCATaGCTTCTTTTGCATTGTTCC +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLQLLLS*LLLHCS
Trigger: GGAACAATGCAAAAGAAGCCATGACAGCAATAGCTG...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAATCTTCAACAGGTGCTaGTATAGGCTGGGTTTTGGC +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEIFNRC*YRLGFG
Trigger: GCCAAAACCCAGCCTATACCAGCACCTGTTGAAGAT...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGGTACACTCTTTGCTTTaGAAGAAACGCCTGGAGCTT +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKVHSLL*KKRLEL
Trigger: AAGCTCCAGGCGTTTCTTCCAAAGCAAAGAGTGTAC...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAAATGTACTCATCCCGTaGGGTAGTAAAATTCCACTT +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTNVLIP*GSKIPL
Trigger: AAGTGGAATTTTACTACCCCACGGGATGAGTACATT...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAAATGTACTCATCCCGTaGGGTAGTAAAATTCCACTT +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLNVLIP*GSKIPL
Trigger: AAGTGGAATTTTACTACCCCACGGGATGAGTACATT...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACGGCTTTTCCTGGGGTTaGCTGACAAACATTCATACC +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYGFSWG*LTNIHT
Trigger: GGTATGAATGTTTGTCAGCCAACCCCAGGAAAAGCC...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGATCATCTAAATCCAGCTaGAATTCTCGGCGAACCATC +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRSSKSS*NSRRTI
Trigger: GATGGTTCGCCGAGAATTCCAGCTGGATTTAGATGA...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCATGTCATCAAAATGTaGAGAAACAGCCCGGATCTT +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLHVIKM*RNSPDL
Trigger: AAGATCCGGGCTGTTTCTCCACATTTTGATGACATG...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGTCACCACTGGCTACTTaGGAGATAATGAAATTGATT +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRSPLAT*EIMKLI
Trigger: AATCAATTTCATTATCTCCCAAGTAGCCAGTGGTGA...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACCTTCATGAAAATGTaGATGTCCAGAAGAATTCTG +
Preference number: 4 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFTFMKM*MSRRIL
Trigger: CAGAATTCTTCTGGACATCCACATTTTCATGAAGGT...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGTTCCAAGTAGACAGATaGCCCCACTTCTTCTCCATT +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKFQVDR*PHFFSI
Trigger: AATGGAGAAGAAGTGGGGCCATCTGTCTACTTGGAA...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAACTGGAGGAATTGCTaGTTTGGAGAGCAAAGAGGT +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRNWRNC*FGEQRG
Trigger: ACCTCTTTGCTCTCCAAACCAGCAATTCCTCCAGTT...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGAGCTGTGTCAGAGCTTaGATGCTTGTGTTGATGTCA +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKSCVRA*MLVLMS
Trigger: TGACATCAACACAAGCATCCAAGCTCTGACACAGCT...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111337.3
CDS-3UTR TCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGCTATACAGGCCACTATaGTCTTGGGGTTCTTGTTAT +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKLYRPL*SWGSCY
Trigger: ATAACAAGAACCCCAAGATCATAGTGGCCTGTATAG...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGTCCTGGTTTGGGTCCTaGAACATCTTTTGTGTCTTT +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKSWFGS*NIFCVF
Trigger: AAAGACACAAAAGATGTTTCAGGACCCAAACCAGGA...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGATGTCCCTGCATCTTTTaGAATTCTGCATCTATCTGG +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRCPCIF*NSASIW
Trigger: CCAGATAGATGCAGAATTTCAAAAGATGCAGGGACA...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACACTTAGACACCAACTCTaGAGTAATTTTGTCACTGAT +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTLRHQL*SNFVTD
Trigger: ATCAGTGACAAAATTACTTCAGAGTTGGTGTCTAAG...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACTTAGACACCAACTCTaGAGTAATTTTGTCACTGAT +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLLRHQL*SNFVTD
Trigger: ATCAGTGACAAAATTACTTCAGAGTTGGTGTCTAAG...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCACCAAGATTTTGTTTaGATCATTCAGTCGACCCTT +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLHQDFV*IIQSTL
Trigger: AAGGGTCGACTGAATGATTCAAACAAAATCTTGGTG...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGCATGGCCAGTACTTaGTCTTTAGAAGTTGGCTTT +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRSMAST*SLEVGF
Trigger: AAAGCCAACTTCTAAAGATCAAGTACTGGCCATGCT...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGAGCATGGCCAGTACTTaGTCTTTAGAAGTTGGCTTT +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKSMAST*SLEVGF
Trigger: AAAGCCAACTTCTAAAGATCAAGTACTGGCCATGCT...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGATTTTCACTTTCCAAGTaGTCAACCATGACAGCTAGG +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRFSLSK*STMTAR
Trigger: CCTAGCTGTCATGGTTGATCACTTGGAAAGTGAAAA...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACCTCACTCAGCAGGGTaGAAAGCAATTTTAAATATT +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLPHSAG*KAILNI
Trigger: AATATTTAAAATTGCTTTTCACCCTGCTGAGTGAGG...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTCCTCACTCAGCAGGGTaGAAAGCAATTTTAAATATT +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTPHSAG*KAILNI
Trigger: AATATTTAAAATTGCTTTTCACCCTGCTGAGTGAGG...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGTCATTCTCAGTAAGATaGTACTCTTCCTCACTCAGC +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKSFSVR*YSSSLS
Trigger: GCTGAGTGAGGAAGAGTATCATCTTACTGAGAATGA...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAGGACATCTTTACGAATaGCATCCTTTGGTTCTCCAA +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRGHLYE*HPLVLQ
Trigger: TTGGAGAACCAAAGGATGTCATTCGTAAAGATGTCC...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAATCAGTTTGAACACCTaGTCTCCATGCACGTTGTAC +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEISLNT*SPCTLY
Trigger: GTACAACGTGCATGGAGATCAGGTGTTCAAACTGAT...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAGATTTCCAATCAGTTTaGACACCTGATCTCCATGCA +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRDFQSV*TPDLHA
Trigger: TGCATGGAGATCAGGTGTTCAAACTGATTGGAAATC...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGGTTGCTATCAGAAACTaGTCAATGTGGCCAGACATA +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKVAIRN*SMWPDI
Trigger: TATGTCTGGCCACATTGATCAGTTTCTGATAGCAAC...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAATCCAGCATTAAGGTaGTCAGTCCATGCATCAGGT +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYNPALR*SVHASG
Trigger: ACCTGATGCATGGACTGATCACCTTAATGCTGGATT...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAGATATTGGTCTGGTCTaGTTTCTCCAAAACCTTCAC +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRDIGLV*FLQNLH
Trigger: GTGAAGGTTTTGGAGAAATCAGACCAGACCAATATC...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACATGGCACAACATGTCCTaGATATTGTCCAAATTTCTT +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTWHNMS*ILSKFL
Trigger: AAGAAATTTGGACAATATGCAGGACATGTTGTGCCA...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAATAAAAAGTGATGTCTaGTGCTTGATGGTGGGATTT +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTIKSDV*CLMVGF
Trigger: AAATCCCACCATCAAGCAGCAGACATCACTTTTTAT...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGATATTCAGTGTCTGCTaGACCAAGATTTTGTTTGAA +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRIFSVC*TKILFE
Trigger: TTCAAACAAAATCTTGGTGCAGCAGACACTGAATAT...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACCTCTTCCAGGCACTCTaGTCTCTGCTTAGAGTTTTT +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYLFQAL*SLLRVF
Trigger: AAAAACTCTAAGCAGAGAGCAGAGTGCCTGGAAGAG...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAATGTCATCAAGTTTGTaGTGGACAAGCTCTGGCATT +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRMSSSL*WTSSGI
Trigger: AATGCCAGAGCTTGTCCAGCACAAACTTGATGACAT...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGATGTCATCAAGTTTGTaGTGGACAAGCTCTGGCATT +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKMSSSL*WTSSGI
Trigger: AATGCCAGAGCTTGTCCAGCACAAACTTGATGACAT...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTGATGCTGTATTACTGTaGATGTCATCAAAATGTGGA +
Preference number: 4 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTDAVLL*MSSKCG
Trigger: TCCACATTTTGATGACATGCACAGTAATACAGCATC...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGATGCTGTATTACTGTaGATGTCATCAAAATGTGGA +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQDAVLL*MSSKCG
Trigger: TCCACATTTTGATGACATGCACAGTAATACAGCATC...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACGAAATTGATTGTGGATaGTGTATTACTGTGCATGTC +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYEIDCG*CITVHV
Trigger: GACATGCACAGTAATACAGCATCCACAATCAATTTC...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAGAAATTGATTGTGGATaGTGTATTACTGTGCATGTC +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLEIDCG*CITVHV
Trigger: GACATGCACAGTAATACAGCATCCACAATCAATTTC...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACTTTCCTTATCAGACTTaGTCCCAGTCTGGTCCATAC +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYFPYQT*SQSGPY
Trigger: GTATGGACCAGACTGGGAGCAAGTCTGATAAGGAAA...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGTATTTGGACCATTCTaGACTCTTTTCATCCTTTAT +
Preference number: 4 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRVFGPF*TLFILY
Trigger: ATAAAGGATGAAAAGAGTCCAGAATGGTCCAAATAC...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGAGTCTTTGGGAAGTTTaGAAAGGATCTCTACCGCAT +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKSLWEV*KGSLPH
Trigger: ATGCGGTAGAGATCCTTTCCAAACTTCCCAAAGACT...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGATTCCAGGTAGAGGCTTaGATTCCTTCTTTTCAGTTG +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRFQVEA*IPSFQL
Trigger: CAACTGAAAAGAAGGAATCCAAGCCTCTACCTGGAA...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGTTCCAGGTAGAGGCTTaGATTCCTTCTTTTCAGTTG +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKFQVEA*IPSFQL
Trigger: CAACTGAAAAGAAGGAATCCAAGCCTCTACCTGGAA...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGATTTACCTTTCTTAGATaGTCCACCAGCCTTAGCAGT +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRFTFLR*STSLSS
Trigger: ACTGCTAAGGCTGGTGGACCATCTAAGAAAGGTAAA...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAATCATCTAAATCCAGCTaGAATTCTCGGCGAACCATC +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATESSKSS*NSRRTI
Trigger: GATGGTTCGCCGAGAATTCCAGCTGGATTTAGATGA...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACATCACCACTGGCTACTTaGGAGATAATGAAATTGATT +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTSPLAT*EIMKLI
Trigger: AATCAATTTCATTATCTCCCAAGTAGCCAGTGGTGA...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACTCACCACTGGCTACTTaGGAGATAATGAAATTGATT +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYSPLAT*EIMKLI
Trigger: AATCAATTTCATTATCTCCCAAGTAGCCAGTGGTGA...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGCTGAGGATATTGGTCTaGTCTGATTTCTCCAAAACC +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKLRILV*SDFSKT
Trigger: GGTTTTGGAGAAATCAGACCAGACCAATATCCTCAG...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACACCTTCATGAAAATGTaGATGTCCAGAAGAATTCTG +
Preference number: 4 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYTFMKM*MSRRIL
Trigger: CAGAATTCTTCTGGACATCCACATTTTCATGAAGGT...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGACCTTCATGAAAATGTaGATGTCCAGAAGAATTCTG +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQTFMKM*MSRRIL
Trigger: CAGAATTCTTCTGGACATCCACATTTTCATGAAGGT...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAACTGGAGGAATTGCTaGTTTGGAGAGCAAAGAGGT +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYNWRNC*FGEQRG
Trigger: ACCTCTTTGCTCTCCAAACCAGCAATTCCTCCAGTT...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAACTATACAGGCCACTATaGTCTTGGGGTTCTTGTTAT +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATELYRPL*SWGSCY
Trigger: ATAACAAGAACCCCAAGATCATAGTGGCCTGTATAG...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAGTGATGTCTGCTGCTTaGTGGTGGGATTTTTATTAT +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRVMSAA*WWDFYY
Trigger: ATAATAAAAATCCCACCATCAAGCAGCAGACATCAC...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGGTGATGTCTGCTGCTTaGTGGTGGGATTTTTATTAT +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKVMSAA*WWDFYY
Trigger: ATAATAAAAATCCCACCATCAAGCAGCAGACATCAC...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGTCTTGCAATAAAAAGTaGTGTCTGCTGCTTGATGGT +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKSCNKK*CLLLDG
Trigger: ACCATCAAGCAGCAGACATCACTTTTTATTGCAAGA...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAATCCTGGTTTGGGTCCTaGAACATCTTTTGTGTCTTT +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATESWFGS*NIFCVF
Trigger: AAAGACACAAAAGATGTTTCAGGACCCAAACCAGGA...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACTGTCCCTGCATCTTTTaGAATTCTGCATCTATCTGG +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYCPCIF*NSASIW
Trigger: CCAGATAGATGCAGAATTTCAAAAGATGCAGGGACA...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGTGCTGGAAATCTGAGTaGAACATTTCATCCTGTAAC +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKCWKSE*NISSCN
Trigger: GTTACAGGATGAAATGTTTCACTCAGATTTCCAGCA...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACGTGATGCTGGAAATCTaGGTGAAACATTTCATCCTG +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYVMLEI*VKHFIL
Trigger: CAGGATGAAATGTTTCACTCAGATTTCCAGCATCAC...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAACTTCATAACAAGCTCTaGGAATTTGGGAGAACTAGC +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATELHNKL*EFGRTS
Trigger: GCTAGTTCTCCCAAATTCTCAGAGCTTGTTATGAAG...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGAGTAAGACATTTTGCTaGCAAAGCTACCAACATGAC +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKSKTFC*QSYQHD
Trigger: GTCATGTTGGTAGCTTTGGCAGCAAAATGTCTTACT...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACGCCAGTAAGACATTTTaGTGCCAAAGCTACCAACAT +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYASKTF*CQSYQH
Trigger: ATGTTGGTAGCTTTGGCAGCAAAATGTCTTACTGGC...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGGCAGAATCATTGATGTaGTTAAGTAGAGCAGCACAA +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKAESLM*LSRAAQ
Trigger: TTGTGCTGCTCTACTTAAGCACATCAATGATTCTGC...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAGCAGAATCATTGATGTaGTTAAGTAGAGCAGCACAA +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRAESLM*LSRAAQ
Trigger: TTGTGCTGCTCTACTTAAGCACATCAATGATTCTGC...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAATTTCCTTCCAGTTGCTaGTGTCTAGAAGCTGAATAC +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEFPSSC*CLEAEY
Trigger: GTATTCAGCTTCTAGACAGCAGCAACTGGAAGGAAA...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACTTTCCTTCCAGTTGCTaGTGTCTAGAAGCTGAATAC +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYFPSSC*CLEAEY
Trigger: GTATTCAGCTTCTAGACAGCAGCAACTGGAAGGAAA...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAATATTCAGTGTCTGCTaGACCAAGATTTTGTTTGAA +
Preference number: 4 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTIFSVC*TKILFE
Trigger: TTCAAACAAAATCTTGGTGCAGCAGACACTGAATAT...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGATATTCAGTGTCTGCTaGACCAAGATTTTGTTTGAA +
Preference number: 4 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQIFSVC*TKILFE
Trigger: TTCAAACAAAATCTTGGTGCAGCAGACACTGAATAT...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAATATTCAGTGTCTGCTaGACCAAGATTTTGTTTGAA +
Preference number: 4 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLIFSVC*TKILFE
Trigger: TTCAAACAAAATCTTGGTGCAGCAGACACTGAATAT...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGTTTATATTCTGTGTaGGCTGAGGTTTCTCTTCGG +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYSLYSV*AEVSLR
Trigger: CCGAAGAGAAACCTCAGCGCACACAGAATATAAACT...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAAGTTTATATTCTGTGTaGGCTGAGGTTTCTCTTCGG +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATESLYSV*AEVSLR
Trigger: CCGAAGAGAAACCTCAGCGCACACAGAATATAAACT...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGGATGCTGTATTACTGTaGATGTCATCAAAATGTGGA +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLDAVLL*MSSKCG
Trigger: TCCACATTTTGATGACATGCACAGTAATACAGCATC...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAATTCCAGGTAGAGGCTTaGATTCCTTCTTTTCAGTTG +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEFQVEA*IPSFQL
Trigger: CAACTGAAAAGAAGGAATCCAAGCCTCTACCTGGAA...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACTTAACGGTCCTGGTTTaGGTCCTGAAACATCTTTTG +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYLTVLV*VLKHLL
Trigger: CAAAAGATGTTTCAGGACCCAAACCAGGACCGTTAA...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAATTTACCTTTCTTAGATaGTCCACCAGCCTTAGCAGT +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEFTFLR*STSLSS
Trigger: ACTGCTAAGGCTGGTGGACCATCTAAGAAAGGTAAA...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACTTTACCTTTCTTAGATaGTCCACCAGCCTTAGCAGT +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYFTFLR*STSLSS
Trigger: ACTGCTAAGGCTGGTGGACCATCTAAGAAAGGTAAA...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAACCCTTCAAGGCAGTTaGAAGTTCACCTATATTTGG +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATETLQGS*KFTYIW
Trigger: CCAAATATAGGTGAACTTCCAACTGCCTTGAAGGGT...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGAATGTACTCATCCCGTaGGGTAGTAAAATTCCACTT +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKNVLIP*GSKIPL
Trigger: AAGTGGAATTTTACTACCCCACGGGATGAGTACATT...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAACGAATGACATCCTTTaGTTCTCCAACCTTGAGGAT +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATETNDIL*FSNLED
Trigger: ATCCTCAAGGTTGGAGAACCAAAGGATGTCATTCGT...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACCATGTCATCAAAATGTaGAGAAACAGCCCGGATCTT +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYHVIKM*RNSPDL
Trigger: AAGATCCGGGCTGTTTCTCCACATTTTGATGACATG...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAACATGTCATCAAAATGTaGAGAAACAGCCCGGATCTT +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEHVIKM*RNSPDL
Trigger: AAGATCCGGGCTGTTTCTCCACATTTTGATGACATG...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGACCTTCATGAAAATGTaGATGTCCAGAAGAATTCTG +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLTFMKM*MSRRIL
Trigger: CAGAATTCTTCTGGACATCCACATTTTCATGAAGGT...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACTCTTGCAATAAAAAGTaGTGTCTGCTGCTTGATGGT +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYSCNKK*CLLLDG
Trigger: ACCATCAAGCAGCAGACATCACTTTTTATTGCAAGA...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAATCTTGCAATAAAAAGTaGTGTCTGCTGCTTGATGGT +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATESCNKK*CLLLDG
Trigger: ACCATCAAGCAGCAGACATCACTTTTTATTGCAAGA...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAAGACAGGAATACAGATaGGGAACACAAAGGATAAGA +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATERQEYR*GTQRIR
Trigger: TCTTATCCTTTGTGTTCCTCATCTGTATTCCTGTCT...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACTGCTGGAAATCTGAGTaGAACATTTCATCCTGTAAC +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYCWKSE*NISSCN
Trigger: GTTACAGGATGAAATGTTTCACTCAGATTTCCAGCA...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGACCTCACTCAGCAGGGTaGAAAGCAATTTTAAATATT +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRPHSAG*KAILNI
Trigger: AATATTTAAAATTGCTTTTCACCCTGCTGAGTGAGG...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGCCTCACTCAGCAGGGTaGAAAGCAATTTTAAATATT +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKPHSAG*KAILNI
Trigger: AATATTTAAAATTGCTTTTCACCCTGCTGAGTGAGG...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACGTGGGCCTCCAATTCTaGCTCATTCTTATTATCAAT +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYVGLQF*LILIIN
Trigger: ATTGATAATAAGAATGAGTCAGAATTGGAGGCCCAC...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR TCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGTGGGCCTCCAATTCTaGCTCATTCTTATTATCAAT +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEVGLQF*LILIIN
Trigger: ATTGATAATAAGAATGAGTCAGAATTGGAGGCCCAC...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGTTTCAATTGAACCACTaGATTGGAATCAGTGACAAA +
Preference number: 4 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLFQLNH*IGISDK
Trigger: TTTGTCACTGATTCCAATGCAGTGGTTCAATTGAAA...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGTGGCACAACATGTCCTaGATATTGTCCAAATTTCTT +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKWHNMS*ILSKFL
Trigger: AAGAAATTTGGACAATATGCAGGACATGTTGTGCCA...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGATGGCACAACATGTCCTaGATATTGTCCAAATTTCTT +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRWHNMS*ILSKFL
Trigger: AAGAAATTTGGACAATATGCAGGACATGTTGTGCCA...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAAAAGTGATGTCTGCTaGTTGATGGTGGGATTTTTA +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRKSDVC*LMVGFL
Trigger: TAAAAATCCCACCATCAAGCAGCAGACATCACTTTT...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGATAAAAAGTGATGTCTaGTGCTTGATGGTGGGATTT +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKIKSDV*CLMVGF
Trigger: AAATCCCACCATCAAGCAGCAGACATCACTTTTTAT...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGCAGAATCATTGATGTaGTTAAGTAGAGCAGCACAA +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEAESLM*LSRAAQ
Trigger: TTGTGCTGCTCTACTTAAGCACATCAATGATTCTGC...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGGAAATTGATTGTGGATaGTGTATTACTGTGCATGTC +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKEIDCG*CITVHV
Trigger: GACATGCACAGTAATACAGCATCCACAATCAATTTC...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAATGCATCATAAAGAATaGCAAAGCATCTTGGGCCTT +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEMHHKE*QSILGL
Trigger: AAGGCCCAAGATGCTTTGCCATTCTTTATGATGCAT...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAATGTACTCATCCCGTaGGGTAGTAAAATTCCACTT +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYNVLIP*GSKIPL
Trigger: AAGTGGAATTTTACTACCCCACGGGATGAGTACATT...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGTTTCAATTGAACCACTaGATTGGAATCAGTGACAAA +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKFQLNH*IGISDK
Trigger: TTTGTCACTGATTCCAATGCAGTGGTTCAATTGAAA...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAAAAAGTGATGTCTGCTaGTTGATGGTGGGATTTTTA +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEKSDVC*LMVGFL
Trigger: TAAAAATCCCACCATCAAGCAGCAGACATCACTTTT...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
41% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAATAAAAAGTGATGTCTaGTGCTTGATGGTGGGATTT +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEIKSDV*CLMVGF
Trigger: AAATCCCACCATCAAGCAGCAGACATCACTTTTTAT...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACGATGCTGTATTACTGTaGATGTCATCAAAATGTGGA +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYDAVLL*MSSKCG
Trigger: TCCACATTTTGATGACATGCACAGTAATACAGCATC...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACGAAATTGATTGTGGATaGTGTATTACTGTGCATGTC +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYEIDCG*CITVHV
Trigger: GACATGCACAGTAATACAGCATCCACAATCAATTTC...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAGTATTTGGACCATTCTaGACTCTTTTCATCCTTTAT +
Preference number: 4 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRVFGPF*TLFILY
Trigger: ATAAAGGATGAAAAGAGTCCAGAATGGTCCAAATAC...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CCA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGGTATTTGGACCATTCTaGACTCTTTTCATCCTTTAT +
Preference number: 4 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKVFGPF*TLFILY
Trigger: ATAAAGGATGAAAAGAGTCCAGAATGGTCCAAATAC...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACTTTCAATTGAACCACTaGATTGGAATCAGTGACAAA +
Preference number: 4 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYFQLNH*IGISDK
Trigger: TTTGTCACTGATTCCAATGCAGTGGTTCAATTGAAA...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR GCA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAATTTCAATTGAACCACTaGATTGGAATCAGTGACAAA +
Preference number: 4 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEFQLNH*IGISDK
Trigger: TTTGTCACTGATTCCAATGCAGTGGTTCAATTGAAA...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CCA 90 bp TTGTGGAGGAGGAGGAGGTCATGGTTCCTGCAGAGTGGGTCTGGTTaGAATCCAGGTCTGAGTGCTGGTGCTGTTCCCGGGACTCCCGGA +
Preference number: 5 (lower is better)
Translates to: LWRRRRSWFLQSGSG*NPGLSAGAVPGTPG
Trigger: TCCGGGAGTCCCGGGAACAGCACCAGCACTCAGACCTGGATTCCAACCAGACCCACTCTGCAGGAACCATGACCTCCTCCTCCTCCACAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CCA 90 bp CCCGGGACTCCCGGAGCTGTGAGAGCTTGCTATGGAGCATGTCTGTaGAGGAGGCAACTGGAGGAATTGCTGGTTTGGAGAGCAAAGAGG +
Preference number: 5 (lower is better)
Translates to: PGTPGAVRACYGACL*RRQLEELLVWRAKR
Trigger: CCTCTTTGCTCTCCAAACCAGCAATTCCTCCAGTTGCCTCCTCCACAGACATGCTCCATAGCAAGCTCTCACAGCTCCGGGAGTCCCGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CCA 90 bp TGCTGGTGCTGTTCCCGGGACTCCCGGAGCTGTGAGAGCTTGCTATaGAGCATGTCTGTGGAGGAGGCAACTGGAGGAATTGCTGGTTTG +
Preference number: 5 (lower is better)
Translates to: CWCCSRDSRSCESLL*SMSVEEATGGIAGL
Trigger: CAAACCAGCAATTCCTCCAGTTGCCTCCTCCACAGACATGCTCCATAGCAAGCTCTCACAGCTCCGGGAGTCCCGGGAACAGCACCAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CCA 90 bp TTAGTTGTGGAGGAGGAGGAGGTCATGGTTCCTGCAGAGTGGGTCTaGTTGGAATCCAGGTCTGAGTGCTGGTGCTGTTCCCGGGACTCC +
Preference number: 5 (lower is better)
Translates to: LVVEEEEVMVPAEWV*LESRSECWCCSRDS
Trigger: GGAGTCCCGGGAACAGCACCAGCACTCAGACCTGGATTCCAACCAGACCCACTCTGCAGGAACCATGACCTCCTCCTCCTCCACAACTAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCTCTTTGTCCCGGCACTaGCTGAGCCACCTGGTGCAG +
Preference number: 5 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFSLSRH*LSHLVQ
Trigger: CTGCACCAGGTGGCTCAGCAAGTGCCGGGACAAAGA...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS TCA 90 bp GAGGACACTGTGCTTGTGGGGGTGGGCACACATGTGACCTCCATCTaGGGGGAAATGCCTGTTGAAGTAGGAATCCGGCCTTTGCTTTCT +
Preference number: 5 (lower is better)
Translates to: EDTVLVGVGTHVTSI*GEMPVEVGIRPLLS
Trigger: AGAAAGCAAAGGCCGGATTCCTACTTCAACAGGCATTTCCCCTCAGATGGAGGTCACATGTGTGCCCACCCCCACAAGCACAGTGTCCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS GCA 90 bp CCTGGTTCCTCTCCATCTTCTCCTTCATCTGTAGCACTTGTGCTGTaGTTAGCAATTCCCCTCGTTGGAGCGGGAGGACTTTGTCCCTGC +
Preference number: 5 (lower is better)
Translates to: PGSSPSSPSSVALVL*LAIPLVGAGGLCPC
Trigger: GCAGGGACAAAGTCCTCCCGCTCCAACGAGGGGAATTGCTAAGCACAGCACAAGTGCTACAGATGAAGGAGAAGATGGAGAGGAACCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CCA 90 bp GGAAACAGAATCTTCAACAGGTGCTGGTATAGGCTGGGTTTTGGCTaGAGCCGACCCTCCCATTGGTTTGGACATGGCCTTAGCAGGTGC +
Preference number: 5 (lower is better)
Translates to: GNRIFNRCWYRLGFG*SRPSHWFGHGLSRC
Trigger: GCACCTGCTAAGGCCATGTCCAAACCAATGGGAGGGTCGGCTCCAGCCAAAACCCAGCCTATACCAGCACCTGTTGAAGATTCTGTTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACTCTTTGTCCCGGCACTaGCTGAGCCACCTGGTGCAG +
Preference number: 5 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYSLSRH*LSHLVQ
Trigger: CTGCACCAGGTGGCTCAGCAAGTGCCGGGACAAAGA...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCGACATAGCTTCAGCTTaGTCTTCCTGCCTCAGGACC +
Preference number: 5 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFDIASA*SSCLRT
Trigger: GGTCCTGAGGCAGGAAGACAAAGCTGAAGCTATGTC...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCGCAGAGTGGGTCTGGTaGGAATCCAGGTCTGAGTGC +
Preference number: 5 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFAEWVW*ESRSEC
Trigger: GCACTCAGACCTGGATTCCAACCAGACCCACTCTGC...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCAGAGTGGGTCTGGTaGGAATCCAGGTCTGAGTGC +
Preference number: 5 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRAEWVW*ESRSEC
Trigger: GCACTCAGACCTGGATTCCAACCAGACCCACTCTGC...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CCA 90 bp CCACCAGCAGACTGTTGCTGTTCCAGTTTAGCTTCTAGTTCTTGTTaGGAACGCAGAAACCGACTGGGCTTAGGAGCACCTGTTGGCAGC +
Preference number: 5 (lower is better)
Translates to: PPADCCCSSLASSSC*ERRNRLGLGAPVGS
Trigger: GCTGCCAACAGGTGCTCCTAAGCCCAGTCGGTTTCTGCGTTCCCAACAAGAACTAGAAGCTAAACTGGAACAGCAACAGTCTGCTGGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CCA 90 bp CTTGCTATGGAGCATGTCTGTGGAGGAGGCAACTGGAGGAATTGCTaGTTTGGAGAGCAAAGAGGTCAGTGGAGGCCGGTCATCTTGCTT +
Preference number: 5 (lower is better)
Translates to: LAMEHVCGGGNWRNC*FGEQRGQWRPVILL
Trigger: AAGCAAGATGACCGGCCTCCACTGACCTCTTTGCTCTCCAAACCAGCAATTCCTCCAGTTGCCTCCTCCACAGACATGCTCCATAGCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCCCCAGTTCCTTGGCTTaGGCTTTAGGTTGGTTGAAG +
Preference number: 5 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFPSSLA*ALGWLK
Trigger: CTTCAACCAACCTAAAGCCAAAGCCAAGGAACTGGG...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCCAGGCCACTATGATCTaGGGGTTCTTGTTATCCAGG +
Preference number: 5 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFQATMI*GFLLSR
Trigger: CCTGGATAACAAGAACCCCAAGATCATAGTGGCCTG...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCTGCCTCCTGCAGGGCTaGTACCACTTGAGGCTTCTT +
Preference number: 5 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFCLLQG*YHLRLL
Trigger: AAGAAGCCTCAAGTGGTACAAGCCCTGCAGGAGGCA...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCGGAAGATTGCATCAATaGCCTCCTGCAGGGCTTGTA +
Preference number: 5 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFGRLHQ*PPAGLV
Trigger: TACAAGCCCTGCAGGAGGCAATTGATGCAATCTTCC...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCTGGAGCGGGAGGACTTaGTCCCTGCATCTTTTGAAA +
Preference number: 5 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFWSGRT*SLHLLK
Trigger: TTTCAAAAGATGCAGGGACAAAGTCCTCCCGCTCCA...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGCCCAAGCATTCACAGTaGCTAGGGCAGCAGCTCGAA +
Preference number: 5 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRPKHSQ*LGQQLE
Trigger: TTCGAGCTGCTGCCCTAGCAACTGTGAATGCTTGGG...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCGAATGGCAAAGCATCTaGGGCCTTCTTCCGTACATC +
Preference number: 5 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFEWQSI*GLLPYI
Trigger: GATGTACGGAAGAAGGCCCAAGATGCTTTGCCATTC...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCCGGAGCTGTGAGAGCTaGCTATGGAGCATGTCTGTG +
Preference number: 5 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFRSCES*LWSMSV
Trigger: CACAGACATGCTCCATAGCAAGCTCTCACAGCTCCG...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS GCA 90 bp GTGAGAAGGCCATTGACATCACCTGCTCAGCTGTCCAGGGCAGCATaGACGCTTCAGCTATTGCTGTCATGGCTTCTTTTGCATTGTTCC +
Preference number: 5 (lower is better)
Translates to: VRRPLTSPAQLSRAA*TLQLLLSWLLLHCS
Trigger: GGAACAATGCAAAAGAAGCCATGACAGCAATAGCTGAAGCGTGCATGCTGCCCTGGACAGCTGAGCAGGTGATGTCAATGGCCTTCTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CCA 90 bp TCTATGGTACTGGAAACAGAATCTTCAACAGGTGCTGGTATAGGCTaGGTTTTGGCTGGAGCCGACCCTCCCATTGGTTTGGACATGGCC +
Preference number: 5 (lower is better)
Translates to: SMVLETESSTGAGIG*VLAGADPPIGLDMA
Trigger: GGCCATGTCCAAACCAATGGGAGGGTCGGCTCCAGCCAAAACCCAGCCTATACCAGCACCTGTTGAAGATTCTGTTTCCAGTACCATAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CCA 90 bp TATGGAGCATGTCTGTGGAGGAGGCAACTGGAGGAATTGCTGGTTTaGAGAGCAAAGAGGTCAGTGGAGGCCGGTCATCTTGCTTTGTGT +
Preference number: 5 (lower is better)
Translates to: YGACLWRRQLEELLV*RAKRSVEAGHLALC
Trigger: ACACAAAGCAAGATGACCGGCCTCCACTGACCTCTTTGCTCTCCAAACCAGCAATTCCTCCAGTTGCCTCCTCCACAGACATGCTCCATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGTGCCTCCTGCAGGGCTaGTACCACTTGAGGCTTCTT +
Preference number: 5 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQCLLQG*YHLRLL
Trigger: AAGAAGCCTCAAGTGGTACAAGCCCTGCAGGAGGCA...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCTGCACGCTTCAGCTATaGCTGTCATGGCTTCTTTTG +
Preference number: 5 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFCTLQL*LSWLLL
Trigger: CAAAAGAAGCCATGACAGCAATAGCTGAAGCGTGCA...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCTCACAGCAGGATTTGTaGCAGCAAGAGCAGTCTTCA +
Preference number: 5 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFSQQDL*QQEQSS
Trigger: TGAAGACTGCTCTTGCTGCAACAAATCCTGCTGTGA...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACCCAAGCATTCACAGTaGCTAGGGCAGCAGCTCGAA +
Preference number: 5 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLPKHSQ*LGQQLE
Trigger: TTCGAGCTGCTGCCCTAGCAACTGTGAATGCTTGGG...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTCCCAAGCATTCACAGTaGCTAGGGCAGCAGCTCGAA +
Preference number: 5 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTPKHSQ*LGQQLE
Trigger: TTCGAGCTGCTGCCCTAGCAACTGTGAATGCTTGGG...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCTCCCTTGTACACTCTTaGCTTTGGAAGAAACGCCTG +
Preference number: 5 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFSLVHS*LWKKRL
Trigger: CAGGCGTTTCTTCCAAAGCAAAGAGTGTACAAGGGA...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGCAGCAGAGGGTCTCTTaGCTGACCGCTTTATCCTCT +
Preference number: 5 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRQQRVS*LTALSS
Trigger: AGAGGATAAAGCGGTCAGCAAAGAGACCCTCTGCTG...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCGACATAGCTTCAGCTTaGTCTTCCTGCCTCAGGACC +
Preference number: 5 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFDIASA*SSCLRT
Trigger: GGTCCTGAGGCAGGAAGACAAAGCTGAAGCTATGTC...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCAGAACGAATCACCTGTaGTCCTTCCTCCAGATCTTC +
Preference number: 5 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFRTNHL*SFLQIF
Trigger: GAAGATCTGGAGGAAGGACAACAGGTGATTCGTTCT...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCGTTTCCTTATCAGACTaGCTCCCAGTCTGGTCCATA +
Preference number: 5 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFVSLSD*LPVWSI
Trigger: TATGGACCAGACTGGGAGCAAGTCTGATAAGGAAAC...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS GCA 90 bp ATCAGGCTTAGCTTCTATGGTACTGGAAACAGAATCTTCAACAGGTaGTGGTATAGGCTGGGTTTTGGCTGGAGCCGACCCTCCCATTGG +
Preference number: 5 (lower is better)
Translates to: IRLSFYGTGNRIFNR*WYRLGFGWSRPSHW
Trigger: CCAATGGGAGGGTCGGCTCCAGCCAAAACCCAGCCTATACCAGCACCTGTTGAAGATTCTGTTTCCAGTACCATAGAAGCTAAGCCTGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGCCCAGTTCCTTGGCTTaGGCTTTAGGTTGGTTGAAG +
Preference number: 5 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRPSSLA*ALGWLK
Trigger: CTTCAACCAACCTAAAGCCAAAGCCAAGGAACTGGG...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGTCTATGCCCAGTTCCTaGGCTTTGGCTTTAGGTTGG +
Preference number: 5 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRSMPSS*ALALGW
Trigger: CCAACCTAAAGCCAAAGCCAAGGAACTGGGCATAGA...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCAAGTCTTTGGGAAGTTaGGAAAGGATCTCTACCGCA +
Preference number: 5 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFKSLGS*ERISTA
Trigger: TGCGGTAGAGATCCTTTCCAAACTTCCCAAAGACTT...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCGCAGCAGCTCGAACATaGTTCTTGCTATCTCCGAGA +
Preference number: 5 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFAAART*FLLSPR
Trigger: TCTCGGAGATAGCAAGAACAATGTTCGAGCTGCTGC...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCAGCAGCTCGAACATaGTTCTTGCTATCTCCGAGA +
Preference number: 5 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRAAART*FLLSPR
Trigger: TCTCGGAGATAGCAAGAACAATGTTCGAGCTGCTGC...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCTTCTTTCATGCCAGTTaGTTCTGCCCAAGCATTCAC +
Preference number: 5 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFFFHAS*FCPSIH
Trigger: GTGAATGCTTGGGCAGAACAAACTGGCATGAAAGAA...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGATGGCATGTTAGCTTaGGCCTTTTCTAGCATGGCC +
Preference number: 5 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRDGMLA*AFSSMA
Trigger: GGCCATGCTAGAAAAGGCCAAAGCTAACATGCCATC...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGCAGAGGGTCTCTTaGCTGACCGCTTTATCCTCT +
Preference number: 5 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLQQRVS*LTALSS
Trigger: AGAGGATAAAGCGGTCAGCAAAGAGACCCTCTGCTG...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGTCCTCAGCTGGTCCCTaGCGTAGCATGTTGGCATTA +
Preference number: 5 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQSSAGP*RSMLAL
Trigger: TAATGCCAACATGCTACGCAAGGGACCAGCTGAGGA...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTATCCTCAGCTGGTCCCTaGCGTAGCATGTTGGCATTA +
Preference number: 5 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLSSAGP*RSMLAL
Trigger: TAATGCCAACATGCTACGCAAGGGACCAGCTGAGGA...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACTCCTCAGCTGGTCCCTaGCGTAGCATGTTGGCATTA +
Preference number: 5 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYSSAGP*RSMLAL
Trigger: TAATGCCAACATGCTACGCAAGGGACCAGCTGAGGA...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCGCTTGGATGCTTGTGTaGATGTCACCACTGGCTACT +
Preference number: 5 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFAWMLV*MSPLAT
Trigger: AGTAGCCAGTGGTGACATCAACACAAGCATCCAAGC...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCAATCTGTGTCAGAGCTaGGATGCTTGTGTTGATGTC +
Preference number: 5 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFNLCQS*DACVDV
Trigger: GACATCAACACAAGCATCCAAGCTCTGACACAGATT...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGACATAGCTTCAGCTTaGTCTTCCTGCCTCAGGACC +
Preference number: 5 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQDIASA*SSCLRT
Trigger: GGTCCTGAGGCAGGAAGACAAAGCTGAAGCTATGTC...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGAGGGCACTGAGGATATaGGTCTGGTCTGATTTCTCC +
Preference number: 5 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRRALRI*VWSDFS
Trigger: GGAGAAATCAGACCAGACCAATATCCTCAGTGCCCT...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCTCATCTTGCTTTGTGTaGTCAAGACCACACCGCTGC +
Preference number: 5 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFSSCFV*SRPHRC
Trigger: GCAGCGGTGTGGTCTTGACAACACAAAGCAAGATGA...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCGGAGGAATTGCTGGTTaGGAGAGCAAAGAGGTCAGT +
Preference number: 5 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFGGIAG*ESKEVS
Trigger: ACTGACCTCTTTGCTCTCCAAACCAGCAATTCCTCC...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCAGGCAACTGGAGGAATaGCTGGTTTGGAGAGCAAAG +
Preference number: 5 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFRQLEE*LVWRAK
Trigger: CTTTGCTCTCCAAACCAGCAATTCCTCCAGTTGCCT...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCGGAGCTGTGAGAGCTaGCTATGGAGCATGTCTGTG +
Preference number: 5 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLRSCES*LWSMSV
Trigger: CACAGACATGCTCCATAGCAAGCTCTCACAGCTCCG...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGGCAGAGTGGGTCTGGTaGGAATCCAGGTCTGAGTGC +
Preference number: 5 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKAEWVW*ESRSEC
Trigger: GCACTCAGACCTGGATTCCAACCAGACCCACTCTGC...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS TCA 90 bp TTTCTCTTCGGCCTGTTTCACAGGTGCAGCAGAGGGTCTCTTTGCTaGCCGCTTTATCCTCTCCTCAAGCATGCTCATGTCTTTCTCAGA +
Preference number: 5 (lower is better)
Translates to: FLFGLFHRCSRGSLC*PLYPLLKHAHVFLR
Trigger: TCTGAGAAAGACATGAGCATGCTTGAGGAGAGGATAAAGCGGTCAGCAAAGAGACCCTCTGCTGCACCTGTGAAACAGGCCGAAGAGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS GCA 90 bp CAGCCTTTTGGAATTCTTCCATACAGGCCAGCCTTTCCTTCCAGTTaGTGCTGTCTAGAAGCTGAATACAGGTTGGGGGAAGAACAGCTG +
Preference number: 5 (lower is better)
Translates to: QPFGILPYRPAFPSS*CCLEAEYRLGEEQL
Trigger: CAGCTGTTCTTCCCCCAACCTGTATTCAGCTTCTAGACAGCAGCAACTGGAAGGAAAGGCTGGCCTGTATGGAAGAATTCCAAAAGGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CCA 90 bp AGGCTTAGCTTCTATGGTACTGGAAACAGAATCTTCAACAGGTGCTaGTATAGGCTGGGTTTTGGCTGGAGCCGACCCTCCCATTGGTTT +
Preference number: 5 (lower is better)
Translates to: RLSFYGTGNRIFNRC*YRLGFGWSRPSHWF
Trigger: AAACCAATGGGAGGGTCGGCTCCAGCCAAAACCCAGCCTATACCAGCACCTGTTGAAGATTCTGTTTCCAGTACCATAGAAGCTAAGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCGGCTTTGGCTTTAGGTaGGTTGAAGACTTTACTTAC +
Preference number: 5 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFGFGFR*VEDFTY
Trigger: GTAAGTAAAGTCTTCAACCAACCTAAAGCCAAAGCC...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACCCCAGTTCCTTGGCTTaGGCTTTAGGTTGGTTGAAG +
Preference number: 5 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYPSSLA*ALGWLK
Trigger: CTTCAACCAACCTAAAGCCAAAGCCAAGGAACTGGG...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTTCTATGCCCAGTTCCTaGGCTTTGGCTTTAGGTTGG +
Preference number: 5 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTSMPSS*ALALGW
Trigger: CCAACCTAAAGCCAAAGCCAAGGAACTGGGCATAGA...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGTCTATGCCCAGTTCCTaGGCTTTGGCTTTAGGTTGG +
Preference number: 5 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQSMPSS*ALALGW
Trigger: CCAACCTAAAGCCAAAGCCAAGGAACTGGGCATAGA...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCCTTCAGAAGCTCTTCTaGTACAGACTCTCCTTTTTC +
Preference number: 5 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFLQKLF*YRLSFF
Trigger: GAAAAAGGAGAGTCTGTACAAGAAGAGCTTCTGAAG...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGCAGGCCACTATGATCTaGGGGTTCTTGTTATCCAGG +
Preference number: 5 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQQATMI*GFLLSR
Trigger: CCTGGATAACAAGAACCCCAAGATCATAGTGGCCTG...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGATGCCTCCTGCAGGGCTaGTACCACTTGAGGCTTCTT +
Preference number: 5 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRCLLQG*YHLRLL
Trigger: AAGAAGCCTCAAGTGGTACAAGCCCTGCAGGAGGCA...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGAAGATTGCATCAATaGCCTCCTGCAGGGCTTGTA +
Preference number: 5 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTGRLHQ*PPAGLV
Trigger: TACAAGCCCTGCAGGAGGCAATTGATGCAATCTTCC...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGAAGATTGCATCAATaGCCTCCTGCAGGGCTTGTA +
Preference number: 5 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQGRLHQ*PPAGLV
Trigger: TACAAGCCCTGCAGGAGGCAATTGATGCAATCTTCC...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCGTCCTGAAACATCTTTaGTGTCTTTGTCCCCTGCAG +
Preference number: 5 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFVLKHL*CLCPLQ
Trigger: CTGCAGGGGACAAAGACACAAAAGATGTTTCAGGAC...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCCTTCACATACTTCAATaGAGAGTTCTGGCTCCACTA +
Preference number: 5 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFLHILQ*RVLAPL
Trigger: TAGTGGAGCCAGAACTCTCAATTGAAGTATGTGAAG...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGAAGCTGAATACAGGTaGGGGGAAGAACAGCTGAAG +
Preference number: 5 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTEAEYR*GEEQLK
Trigger: CTTCAGCTGTTCTTCCCCCAACCTGTATTCAGCTTC...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTGAAGCTGAATACAGGTaGGGGGAAGAACAGCTGAAG +
Preference number: 5 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTEAEYR*GEEQLK
Trigger: CTTCAGCTGTTCTTCCCCCAACCTGTATTCAGCTTC...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACTCCTCACAGCAGGATTaGTTGCAGCAAGAGCAGTCT +
Preference number: 5 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYSSQQD*LQQEQS
Trigger: AGACTGCTCTTGCTGCAACAAATCCTGCTGTGAGGA...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTATGGAGCGGGAGGACTTaGTCCCTGCATCTTTTGAAA +
Preference number: 5 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLWSGRT*SLHLLK
Trigger: TTTCAAAAGATGCAGGGACAAAGTCCTCCCGCTCCA...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACATGGAGCGGGAGGACTTaGTCCCTGCATCTTTTGAAA +
Preference number: 5 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTWSGRT*SLHLLK
Trigger: TTTCAAAAGATGCAGGGACAAAGTCCTCCCGCTCCA...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCCTGATCTTCCAATTCTaGTCACCAATCTTAGACACC +
Preference number: 5 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFLIFQF*SPILDT
Trigger: GGTGTCTAAGATTGGTGACAAGAATTGGAAGATCAG...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGCAGCAGCTCGAACATaGTTCTTGCTATCTCCGAGA +
Preference number: 5 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTAAART*FLLSPR
Trigger: TCTCGGAGATAGCAAGAACAATGTTCGAGCTGCTGC...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAGCAGCAGCTCGAACATaGTTCTTGCTATCTCCGAGA +
Preference number: 5 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLAAART*FLLSPR
Trigger: TCTCGGAGATAGCAAGAACAATGTTCGAGCTGCTGC...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGATGGCATGTTAGCTTaGGCCTTTTCTAGCATGGCC +
Preference number: 5 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTDGMLA*AFSSMA
Trigger: GGCCATGCTAGAAAAGGCCAAAGCTAACATGCCATC...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCTCCCTTGTACACTCTTaGCTTTGGAAGAAACGCCTG +
Preference number: 5 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFSLVHS*LWKKRL
Trigger: CAGGCGTTTCTTCCAAAGCAAAGAGTGTACAAGGGA...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCCTCTGCTTAGAGTTTTaGGACTTGGTTCCTTCCATA +
Preference number: 5 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFLCLEF*DLVPSI
Trigger: TATGGAAGGAACCAAGTCCAAAAACTCTAAGCAGAG...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGAGGCTTTTCCTGGGGTaGGCTGACAAACATTCATAC +
Preference number: 5 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRRLFLG*ADKHSY
Trigger: GTATGAATGTTTGTCAGCCAACCCCAGGAAAAGCCT...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACTGTTACAATGGTGTaGAGGGCAGCATTCCGTACA +
Preference number: 5 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFTVTMV*RAAFRT
Trigger: TGTACGGAATGCTGCCCTCAACACCATTGTAACAGT...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAAGGGCACTGAGGATATaGGTCTGGTCTGATTTCTCC +
Preference number: 5 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLRALRI*VWSDFS
Trigger: GGAGAAATCAGACCAGACCAATATCCTCAGTGCCCT...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCGTTTCCTTATCAGACTaGCTCCCAGTCTGGTCCATA +
Preference number: 5 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFVSLSD*LPVWSI
Trigger: TATGGACCAGACTGGGAGCAAGTCTGATAAGGAAAC...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTGGAGGAATTGCTGGTTaGGAGAGCAAAGAGGTCAGT +
Preference number: 5 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTGGIAG*ESKEVS
Trigger: ACTGACCTCTTTGCTCTCCAAACCAGCAATTCCTCC...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAAGGCAACTGGAGGAATaGCTGGTTTGGAGAGCAAAG +
Preference number: 5 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLRQLEE*LVWRAK
Trigger: CTTTGCTCTCCAAACCAGCAATTCCTCCAGTTGCCT...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGCAGAGTGGGTCTGGTaGGAATCCAGGTCTGAGTGC +
Preference number: 5 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEAEWVW*ESRSEC
Trigger: GCACTCAGACCTGGATTCCAACCAGACCCACTCTGC...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS TCA 90 bp GTTGTCCTTCCTCCAGATCTTCAATCCGAGAATCCAGCATTAAGGTaGTCAGTCCATGCATCAGGTCTTTCAGTACTCCAGTGGAGGCCT +
Preference number: 5 (lower is better)
Translates to: VVLPPDLQSENPALR*SVHASGLSVLQWRP
Trigger: AGGCCTCCACTGGAGTACTGAAAGACCTGATGCATGGACTGATCACCTTAATGCTGGATTCTCGGATTGAAGATCTGGAGGAAGGACAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS GCA 90 bp CCTTTTGGAATTCTTCCATACAGGCCAGCCTTTCCTTCCAGTTGCTaGTGTCTAGAAGCTGAATACAGGTTGGGGGAAGAACAGCTGAAG +
Preference number: 5 (lower is better)
Translates to: PFGILPYRPAFPSSC*CLEAEYRLGEEQLK
Trigger: CTTCAGCTGTTCTTCCCCCAACCTGTATTCAGCTTCTAGACAGCAGCAACTGGAAGGAAAGGCTGGCCTGTATGGAAGAATTCCAAAAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS GCA 90 bp CCAGGGCAGCATGCACGCTTCAGCTATTGCTGTCATGGCTTCTTTTaGATTGTTCCCACATTTCACATCTCCAATCTTGTCTACAAGGCC +
Preference number: 5 (lower is better)
Translates to: PGQHARFSYCCHGFF*IVPTFHISNLVYKA
Trigger: GGCCTTGTAGACAAGATTGGAGATGTGAAATGTGGGAACAATGCAAAAGAAGCCATGACAGCAATAGCTGAAGCGTGCATGCTGCCCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CCA 90 bp GCTCAGCTGTCCAGGGCAGCATGCACGCTTCAGCTATTGCTGTCATaGCTTCTTTTGCATTGTTCCCACATTTCACATCTCCAATCTTGT +
Preference number: 5 (lower is better)
Translates to: AQLSRAACTLQLLLS*LLLHCSHISHLQSC
Trigger: ACAAGATTGGAGATGTGAAATGTGGGAACAATGCAAAAGAAGCCATGACAGCAATAGCTGAAGCGTGCATGCTGCCCTGGACAGCTGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CCA 90 bp TCCTTCATCTGTAGCACTTGTGCTGTGCTTAGCAATTCCCCTCGTTaGAGCGGGAGGACTTTGTCCCTGCATCTTTTGAAATTCTGCATC +
Preference number: 5 (lower is better)
Translates to: SFICSTCAVLSNSPR*SGRTLSLHLLKFCI
Trigger: GATGCAGAATTTCAAAAGATGCAGGGACAAAGTCCTCCCGCTCCAACGAGGGGAATTGCTAAGCACAGCACAAGTGCTACAGATGAAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CCA 90 bp CTCAATCCTCGGCAAAAGATCAACAACATCATTGCCCCCTTCACCTaGTTCCTCTCCATCTTCTCCTTCATCTGTAGCACTTGTGCTGTG +
Preference number: 5 (lower is better)
Translates to: LNPRQKINNIIAPFT*FLSIFSFICSTCAV
Trigger: CACAGCACAAGTGCTACAGATGAAGGAGAAGATGGAGAGGAACCAGGTGAAGGGGGCAATGATGTTGTTGATCTTTTGCCGAGGATTGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCCATACCCACTTAATCTaGCTTTCCATAGCTTGTGTT +
Preference number: 5 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFHTHLI*LSIACV
Trigger: AACACAAGCTATGGAAAGCAAGATTAAGTGGGTATG...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAATGATCTTGGGGTTCTaGTTATCCAGGCCCTTCAGA +
Preference number: 5 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLMILGF*LSRPFR
Trigger: TCTGAAGGGCCTGGATAACAAGAACCCCAAGATCAT...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCAAGTCTTTGGGAAGTTaGGAAAGGATCTCTACCGCA +
Preference number: 5 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFKSLGS*ERISTA
Trigger: TGCGGTAGAGATCCTTTCCAAACTTCCCAAAGACTT...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACTGCCTCCTGCAGGGCTaGTACCACTTGAGGCTTCTT +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYCLLQG*YHLRLL
Trigger: AAGAAGCCTCAAGTGGTACAAGCCCTGCAGGAGGCA...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGGGAAGATTGCATCAATaGCCTCCTGCAGGGCTTGTA +
Preference number: 5 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLGRLHQ*PPAGLV
Trigger: TACAAGCCCTGCAGGAGGCAATTGATGCAATCTTCC...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCTTCACATCTCCAATCTaGTCTACAAGGCCATCTAAT +
Preference number: 5 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFFTSPI*STRPSN
Trigger: ATTAGATGGCCTTGTAGACAAGATTGGAGATGTGAA...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACATGCACGCTTCAGCTATaGCTGTCATGGCTTCTTTTG +
Preference number: 5 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTCTLQL*LSWLLL
Trigger: CAAAAGAAGCCATGACAGCAATAGCTGAAGCGTGCA...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTCTGCTGCACCAAGATTTaGTTTGAATCATTCAGTCGA +
Preference number: 5 (lower is better)
Translates to: TTSLCTMACSGRFTLQGFCCTKI*FESFSR
Trigger: TCGACTGAATGATTCAAACAAAATCTTGGTGCAGCA...GAAGCCCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGCATGGCTACTGCCAGTaGCTGAAGGATATTCAGTGT +
Preference number: 5 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQHGYCQ*LKDIQC
Trigger: ACACTGAATATCCTTCAGCAACTGGCAGTAGCCATG...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACACATGGCTACTGCCAGTaGCTGAAGGATATTCAGTGT +
Preference number: 5 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTHGYCQ*LKDIQC
Trigger: ACACTGAATATCCTTCAGCAACTGGCAGTAGCCATG...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAACCCAAGCATTCACAGTaGCTAGGGCAGCAGCTCGAA +
Preference number: 5 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEPKHSQ*LGQQLE
Trigger: TTCGAGCTGCTGCCCTAGCAACTGTGAATGCTTGGG...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTTCCCTTGTACACTCTTaGCTTTGGAAGAAACGCCTG +
Preference number: 5 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTSLVHS*LWKKRL
Trigger: CAGGCGTTTCTTCCAAAGCAAAGAGTGTACAAGGGA...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGTCCCTTGTACACTCTTaGCTTTGGAAGAAACGCCTG +
Preference number: 5 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQSLVHS*LWKKRL
Trigger: CAGGCGTTTCTTCCAAAGCAAAGAGTGTACAAGGGA...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAGGCTTTTCCTGGGGTaGGCTGACAAACATTCATAC +
Preference number: 5 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYRLFLG*ADKHSY
Trigger: GTATGAATGTTTGTCAGCCAACCCCAGGAAAAGCCT...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGACTGTTACAATGGTGTaGAGGGCAGCATTCCGTACA +
Preference number: 5 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQTVTMV*RAAFRT
Trigger: TGTACGGAATGCTGCCCTCAACACCATTGTAACAGT...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACTGTTACAATGGTGTaGAGGGCAGCATTCCGTACA +
Preference number: 5 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTTVTMV*RAAFRT
Trigger: TGTACGGAATGCTGCCCTCAACACCATTGTAACAGT...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGAAAATGTCATCAAGTTaGTGCTGGACAAGCTCTGGC +
Preference number: 5 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRKMSSS*CWTSSG
Trigger: GCCAGAGCTTGTCCAGCACAAACTTGATGACATTTT...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGGCTTGGATGCTTGTGTaGATGTCACCACTGGCTACT +
Preference number: 5 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLAWMLV*MSPLAT
Trigger: AGTAGCCAGTGGTGACATCAACACAAGCATCCAAGC...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAAGAACGAATCACCTGTaGTCCTTCCTCCAGATCTTC +
Preference number: 5 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLRTNHL*SFLQIF
Trigger: GAAGATCTGGAGGAAGGACAACAGGTGATTCGTTCT...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGACAAGCTCTGAGAATTaGGGAGAACTAGCTGTTGCT +
Preference number: 5 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRTSSEN*GELAVA
Trigger: AGCAACAGCTAGTTCTCCCAAATTCTCAGAGCTTGT...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGAGGCAACTGGAGGAATaGCTGGTTTGGAGAGCAAAG +
Preference number: 5 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLRQLEE*LVWRAK
Trigger: CTTTGCTCTCCAAACCAGCAATTCCTCCAGTTGCCT...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACCGGAGCTGTGAGAGCTaGCTATGGAGCATGTCTGTG +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYRSCES*LWSMSV
Trigger: CACAGACATGCTCCATAGCAAGCTCTCACAGCTCCG...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS TCA 90 bp TTCTCAAAGAAGGACCAACATATAGATACATCACGCCAAGCAGGGTaGTGGCAGAAGTCCTCACAGCAGGATTTGTTGCAGCAAGAGCAG +
Preference number: 5 (lower is better)
Translates to: FSKKDQHIDTSRQAG*WQKSSQQDLLQQEQ
Trigger: CTGCTCTTGCTGCAACAAATCCTGCTGTGAGGACTTCTGCCATCACCCTGCTTGGCGTGATGTATCTATATGTTGGTCCTTCTTTGAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS TCA 90 bp AGCTCTGAGAATTTGGGAGAACTAGCTGTTGCTAGCAGGCTGTCCTaGAGTAAAACAAGCAGGGCACTGAGGATATTGGTCTGGTCTGAT +
Preference number: 5 (lower is better)
Translates to: SSENLGELAVASRLS*SKTSRALRILVWSD
Trigger: ATCAGACCAGACCAATATCCTCAGTGCCCTGCTTGTTTTACTTCAGGACAGCCTGCTAGCAACAGCTAGTTCTCCCAAATTCTCAGAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CCA 90 bp TTTGGACTTGGTTCCTTCCATAATGAAGGGGAACATTTTGCTGGCTaGGTAGACAAGGCACATCCGGTTCAGGATAGCACGGACATCTTT +
Preference number: 5 (lower is better)
Translates to: FGLGSFHNEGEHFAG*VDKAHPVQDSTDIF
Trigger: AAAGATGTCCGTGCTATCCTGAACCGGATGTGCCTTGTCTACCCAGCCAGCAAAATGTTCCCCTTCATTATGGAAGGAACCAAGTCCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGATACAACCTCTCCCGTaGTTTTTCCTGCAACATGAG +
Preference number: 5 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQIQPLP*FFLQHE
Trigger: CTCATGTTGCAGGAAAAACAACGGGAGAGGTTGTAT...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCGGCTTTGGCTTTAGGTaGGTTGAAGACTTTACTTAC +
Preference number: 5 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFGFGFR*VEDFTY
Trigger: GTAAGTAAAGTCTTCAACCAACCTAAAGCCAAAGCC...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGATCTATGCCCAGTTCCTaGGCTTTGGCTTTAGGTTGG +
Preference number: 5 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRSMPSS*ALALGW
Trigger: CCAACCTAAAGCCAAAGCCAAGGAACTGGGCATAGA...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGATGATCTTGGGGTTCTaGTTATCCAGGCCCTTCAGA +
Preference number: 5 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLMILGF*LSRPFR
Trigger: TCTGAAGGGCCTGGATAACAAGAACCCCAAGATCAT...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGCAGGCCACTATGATCTaGGGGTTCTTGTTATCCAGG +
Preference number: 5 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKQATMI*GFLLSR
Trigger: CCTGGATAACAAGAACCCCAAGATCATAGTGGCCTG...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAAAGTCTTTGGGAAGTTaGGAAAGGATCTCTACCGCA +
Preference number: 5 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTKSLGS*ERISTA
Trigger: TGCGGTAGAGATCCTTTCCAAACTTCCCAAAGACTT...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGGCTTGTACCACTaGAGGCTTCTTTTCTTTGAA +
Preference number: 5 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLQGLYH*RLLFFE
Trigger: TTCAAAGAAAAGAAGCCTCAAGTGGTACAAGCCCTG...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCGGCTCCACTATTTCTTaGGTCTCCAATCCTTTCTTA +
Preference number: 5 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFGSTIS*VSNPFL
Trigger: TAAGAAAGGATTGGAGACCAAAGAAATAGTGGAGCC...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGGAAGCTGAATACAGGTaGGGGGAAGAACAGCTGAAG +
Preference number: 5 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKEAEYR*GEEQLK
Trigger: CTTCAGCTGTTCTTCCCCCAACCTGTATTCAGCTTC...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCAGAGCAGTCTTCACGTaGCTAATGAAAGCTTTGACA +
Preference number: 5 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFRAVFT*LMKALT
Trigger: TGTCAAAGCTTTCATTAGCAACGTGAAGACTGCTCT...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGTCCTCACAGCAGGATTaGTTGCAGCAAGAGCAGTCT +
Preference number: 5 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKSSQQD*LQQEQS
Trigger: AGACTGCTCTTGCTGCAACAAATCCTGCTGTGAGGA...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGACCCTTCAAGGCAGTaGGAAGTTCACCTATATTTG +
Preference number: 5 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQDPSRQ*EVHLYL
Trigger: CAAATATAGGTGAACTTCCAACTGCCTTGAAGGGTC...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAGACCCTTCAAGGCAGTaGGAAGTTCACCTATATTTG +
Preference number: 5 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLDPSRQ*EVHLYL
Trigger: CAAATATAGGTGAACTTCCAACTGCCTTGAAGGGTC...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACTTCTTTCATGCCAGTTaGTTCTGCCCAAGCATTCAC +
Preference number: 5 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYFFHAS*FCPSIH
Trigger: GTGAATGCTTGGGCAGAACAAACTGGCATGAAAGAA...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTATCCTTTAAGGTGGTTTaGCTTGGCACTTTCTTCCCT +
Preference number: 5 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLSFKVV*LGTFFP
Trigger: AGGGAAGAAAGTGCCAAGCAAAACCACCTTAAAGGA...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACTCCTTTAAGGTGGTTTaGCTTGGCACTTTCTTCCCT +
Preference number: 5 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYSFKVV*LGTFFP
Trigger: AGGGAAGAAAGTGCCAAGCAAAACCACCTTAAAGGA...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTTCCTTTAAGGTGGTTTaGCTTGGCACTTTCTTCCCT +
Preference number: 5 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTSFKVV*LGTFFP
Trigger: AGGGAAGAAAGTGCCAAGCAAAACCACCTTAAAGGA...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGTCCTTTAAGGTGGTTTaGCTTGGCACTTTCTTCCCT +
Preference number: 5 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQSFKVV*LGTFFP
Trigger: AGGGAAGAAAGTGCCAAGCAAAACCACCTTAAAGGA...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCCTCTGCTTAGAGTTTTaGGACTTGGTTCCTTCCATA +
Preference number: 5 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFLCLEF*DLVPSI
Trigger: TATGGAAGGAACCAAGTCCAAAAACTCTAAGCAGAG...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAACAGCAGAGGGTCTCTTaGCTGACCGCTTTATCCTCT +
Preference number: 5 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEQQRVS*LTALSS
Trigger: AGAGGATAAAGCGGTCAGCAAAGAGACCCTCTGCTG...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACCAGCAGAGGGTCTCTTaGCTGACCGCTTTATCCTCT +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYQQRVS*LTALSS
Trigger: AGAGGATAAAGCGGTCAGCAAAGAGACCCTCTGCTG...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACTCCTCAGCTGGTCCCTaGCGTAGCATGTTGGCATTA +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYSSAGP*RSMLAL
Trigger: TAATGCCAACATGCTACGCAAGGGACCAGCTGAGGA...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAAAAATGTCATCAAGTTaGTGCTGGACAAGCTCTGGC +
Preference number: 5 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTKMSSS*CWTSSG
Trigger: GCCAGAGCTTGTCCAGCACAAACTTGATGACATTTT...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGAATCTGTGTCAGAGCTaGGATGCTTGTGTTGATGTC +
Preference number: 5 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQNLCQS*DACVDV
Trigger: GACATCAACACAAGCATCCAAGCTCTGACACAGATT...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGAGGGCACTGAGGATATaGGTCTGGTCTGATTTCTCC +
Preference number: 5 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKRALRI*VWSDFS
Trigger: GGAGAAATCAGACCAGACCAATATCCTCAGTGCCCT...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAACAAGCTCTGAGAATTaGGGAGAACTAGCTGTTGCT +
Preference number: 5 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTTSSEN*GELAVA
Trigger: AGCAACAGCTAGTTCTCCCAAATTCTCAGAGCTTGT...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGTCATCTTGCTTTGTGTaGTCAAGACCACACCGCTGC +
Preference number: 5 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKSSCFV*SRPHRC
Trigger: GCAGCGGTGTGGTCTTGACAACACAAAGCAAGATGA...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGGGAGGAATTGCTGGTTaGGAGAGCAAAGAGGTCAGT +
Preference number: 5 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKGGIAG*ESKEVS
Trigger: ACTGACCTCTTTGCTCTCCAAACCAGCAATTCCTCC...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGAGGCAACTGGAGGAATaGCTGGTTTGGAGAGCAAAG +
Preference number: 5 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKRQLEE*LVWRAK
Trigger: CTTTGCTCTCCAAACCAGCAATTCCTCCAGTTGCCT...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCCACTTCTTCTCCATTaGTGTTACCTAGGGAGGACA +
Preference number: 5 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLPLLLH*CYLGRT
Trigger: TGTCCTCCCTAGGTAACACAAATGGAGAAGAAGTGG...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS GCA 90 bp TTTTCTGTTTCCTTATCAGACTTGCTCCCAGTCTGGTCCATACTATaGTTCATCATCCGACACAGGTGGGCCTCCAATTCTGACTCATTC +
Preference number: 5 (lower is better)
Translates to: FSVSLSDLLPVWSIL*FIIRHRWASNSDSF
Trigger: GAATGAGTCAGAATTGGAGGCCCACCTGTGTCGGATGATGAAGCATAGTATGGACCAGACTGGGAGCAAGTCTGATAAGGAAACAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACGGCTTTGGCTTTAGGTaGGTTGAAGACTTTACTTAC +
Preference number: 5 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYGFGFR*VEDFTY
Trigger: GTAAGTAAAGTCTTCAACCAACCTAAAGCCAAAGCC...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACACTTCAGAAGCTCTTCTaGTACAGACTCTCCTTTTTC +
Preference number: 5 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTLQKLF*YRLSFF
Trigger: GAAAAAGGAGAGTCTGTACAAGAAGAGCTTCTGAAG...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACCTTCAGAAGCTCTTCTaGTACAGACTCTCCTTTTTC +
Preference number: 5 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYLQKLF*YRLSFF
Trigger: GAAAAAGGAGAGTCTGTACAAGAAGAGCTTCTGAAG...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTCTTCAGAAGCTCTTCTaGTACAGACTCTCCTTTTTC +
Preference number: 5 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTLQKLF*YRLSFF
Trigger: GAAAAAGGAGAGTCTGTACAAGAAGAGCTTCTGAAG...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGTCAGGAGCAGAATCATaGATGTGCTTAAGTAGAGCA +
Preference number: 5 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQSGAES*MCLSRA
Trigger: TGCTCTACTTAAGCACATCAATGATTCTGCTCCTGA...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACATCAGGAGCAGAATCATaGATGTGCTTAAGTAGAGCA +
Preference number: 5 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTSGAES*MCLSRA
Trigger: TGCTCTACTTAAGCACATCAATGATTCTGCTCCTGA...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTTCAGGAGCAGAATCATaGATGTGCTTAAGTAGAGCA +
Preference number: 5 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTSGAES*MCLSRA
Trigger: TGCTCTACTTAAGCACATCAATGATTCTGCTCCTGA...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAGTCCTGAAACATCTTTaGTGTCTTTGTCCCCTGCAG +
Preference number: 5 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRVLKHL*CLCPLQ
Trigger: CTGCAGGGGACAAAGACACAAAAGATGTTTCAGGAC...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGCTCCACTATTTCTTaGGTCTCCAATCCTTTCTTA +
Preference number: 5 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTGSTIS*VSNPFL
Trigger: TAAGAAAGGATTGGAGACCAAAGAAATAGTGGAGCC...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACACTTCACATACTTCAATaGAGAGTTCTGGCTCCACTA +
Preference number: 5 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTLHILQ*RVLAPL
Trigger: TAGTGGAGCCAGAACTCTCAATTGAAGTATGTGAAG...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCTTCACATCTCCAATCTaGTCTACAAGGCCATCTAAT +
Preference number: 5 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFFTSPI*STRPSN
Trigger: ATTAGATGGCCTTGTAGACAAGATTGGAGATGTGAA...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACTGTCATGGCTTCTTTaGCATTGTTCCCACATTTCA +
Preference number: 5 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLLSWLL*HCSHIS
Trigger: TGAAATGTGGGAACAATGCAAAAGAAGCCATGACAG...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACACTGTCATGGCTTCTTTaGCATTGTTCCCACATTTCA +
Preference number: 5 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTLSWLL*HCSHIS
Trigger: TGAAATGTGGGAACAATGCAAAAGAAGCCATGACAG...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTCTGTCATGGCTTCTTTaGCATTGTTCCCACATTTCA +
Preference number: 5 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTLSWLL*HCSHIS
Trigger: TGAAATGTGGGAACAATGCAAAAGAAGCCATGACAG...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGTGCACGCTTCAGCTATaGCTGTCATGGCTTCTTTTG +
Preference number: 5 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKCTLQL*LSWLLL
Trigger: CAAAAGAAGCCATGACAGCAATAGCTGAAGCGTGCA...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAAGAGCAGTCTTCACGTaGCTAATGAAAGCTTTGACA +
Preference number: 5 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTRAVFT*LMKALT
Trigger: TGTCAAAGCTTTCATTAGCAACGTGAAGACTGCTCT...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAAGAGCAGTCTTCACGTaGCTAATGAAAGCTTTGACA +
Preference number: 5 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLRAVFT*LMKALT
Trigger: TGTCAAAGCTTTCATTAGCAACGTGAAGACTGCTCT...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGATCACAGCAGGATTTGTaGCAGCAAGAGCAGTCTTCA +
Preference number: 5 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRSQQDL*QQEQSS
Trigger: TGAAGACTGCTCTTGCTGCAACAAATCCTGCTGTGA...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGTCACAGCAGGATTTGTaGCAGCAAGAGCAGTCTTCA +
Preference number: 5 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKSQQDL*QQEQSS
Trigger: TGAAGACTGCTCTTGCTGCAACAAATCCTGCTGTGA...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACTCCTCACAGCAGGATTaGTTGCAGCAAGAGCAGTCT +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYSSQQD*LQQEQS
Trigger: AGACTGCTCTTGCTGCAACAAATCCTGCTGTGAGGA...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCTTGTCCCTGCATCTTTaGAAATTCTGCATCTATCTG +
Preference number: 5 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFLSLHL*KFCIYL
Trigger: CAGATAGATGCAGAATTTCAAAAGATGCAGGGACAA...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGTTGTCCCTGCATCTTTaGAAATTCTGCATCTATCTG +
Preference number: 5 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRLSLHL*KFCIYL
Trigger: CAGATAGATGCAGAATTTCAAAAGATGCAGGGACAA...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACTGGAGCGGGAGGACTTaGTCCCTGCATCTTTTGAAA +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYWSGRT*SLHLLK
Trigger: TTTCAAAAGATGCAGGGACAAAGTCCTCCCGCTCCA...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACTGATCTTCCAATTCTaGTCACCAATCTTAGACACC +
Preference number: 5 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLLIFQF*SPILDT
Trigger: GGTGTCTAAGATTGGTGACAAGAATTGGAAGATCAG...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAGCACCAAGATTTTGTTaGAATCATTCAGTCGACCCT +
Preference number: 5 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLAPRFC*NHSVDP
Trigger: AGGGTCGACTGAATGATTCAAACAAAATCTTGGTGC...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGCACCAAGATTTTGTTaGAATCATTCAGTCGACCCT +
Preference number: 5 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQAPRFC*NHSVDP
Trigger: AGGGTCGACTGAATGATTCAAACAAAATCTTGGTGC...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGTGCTGCACCAAGATTTaGTTTGAATCATTCAGTCGA +
Preference number: 5 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRCCTKI*FESFSR
Trigger: TCGACTGAATGATTCAAACAAAATCTTGGTGCAGCA...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGAATGGCAAAGCATCTaGGGCCTTCTTCCGTACATC +
Preference number: 5 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEEWQSI*GLLPYI
Trigger: GATGTACGGAAGAAGGCCCAAGATGCTTTGCCATTC...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACGAATGGCAAAGCATCTaGGGCCTTCTTCCGTACATC +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYEWQSI*GLLPYI
Trigger: GATGTACGGAAGAAGGCCCAAGATGCTTTGCCATTC...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACGATGGCATGTTAGCTTaGGCCTTTTCTAGCATGGCC +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYDGMLA*AFSSMA
Trigger: GGCCATGCTAGAAAAGGCCAAAGCTAACATGCCATC...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGATGGCATGTTAGCTTaGGCCTTTTCTAGCATGGCC +
Preference number: 5 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEDGMLA*AFSSMA
Trigger: GGCCATGCTAGAAAAGGCCAAAGCTAACATGCCATC...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTTTAAGGTGGTTTTGCTaGGCACTTTCTTCCCTTGTA +
Preference number: 5 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTLRWFC*ALSSLV
Trigger: TACAAGGGAAGAAAGTGCCAAGCAAAACCACCTTAA...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACATTAAGGTGGTTTTGCTaGGCACTTTCTTCCCTTGTA +
Preference number: 5 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTLRWFC*ALSSLV
Trigger: TACAAGGGAAGAAAGTGCCAAGCAAAACCACCTTAA...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGCTTTCATTAGAACGCTaGTATTGGTGTCGAAAAACC +
Preference number: 5 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRLSLER*YWCRKT
Trigger: GGTTTTTCGACACCAATACAAGCGTTCTAATGAAAG...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACCTCTGCTTAGAGTTTTaGGACTTGGTTCCTTCCATA +
Preference number: 5 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYLCLEF*DLVPSI
Trigger: TATGGAAGGAACCAAGTCCAAAAACTCTAAGCAGAG...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGGCTTTTCCTGGGGTaGGCTGACAAACATTCATAC +
Preference number: 5 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRRLFLG*ADKHSY
Trigger: GTATGAATGTTTGTCAGCCAACCCCAGGAAAAGCCT...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGCTTGGATGCTTGTGTaGATGTCACCACTGGCTACT +
Preference number: 5 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEAWMLV*MSPLAT
Trigger: AGTAGCCAGTGGTGACATCAACACAAGCATCCAAGC...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACGCTTGGATGCTTGTGTaGATGTCACCACTGGCTACT +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYAWMLV*MSPLAT
Trigger: AGTAGCCAGTGGTGACATCAACACAAGCATCCAAGC...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACTTGATGATTTCATCCTaGTCCAACTTCTCATCTGCC +
Preference number: 5 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYLMISS*SNFSSA
Trigger: GGCAGATGAGAAGTTGGACAAGGATGAAATCATCAA...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGGGCACTGAGGATATaGGTCTGGTCTGATTTCTCC +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYRALRI*VWSDFS
Trigger: GGAGAAATCAGACCAGACCAATATCCTCAGTGCCCT...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAGTTTCCTTATCAGACTaGCTCCCAGTCTGGTCCATA +
Preference number: 5 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRVSLSD*LPVWSI
Trigger: TATGGACCAGACTGGGAGCAAGTCTGATAAGGAAAC...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAATCATCTTGCTTTGTGTaGTCAAGACCACACCGCTGC +
Preference number: 5 (lower is better)
Translates to: LSHAMHSYRIQCPFRATESSCFV*SRPHRC
Trigger: GCAGCGGTGTGGTCTTGACAACACAAAGCAAGATGA...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACGGAGGAATTGCTGGTTaGGAGAGCAAAGAGGTCAGT +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYGGIAG*ESKEVS
Trigger: ACTGACCTCTTTGCTCTCCAAACCAGCAATTCCTCC...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGACCACTTCTTCTCCATTaGTGTTACCTAGGGAGGACA +
Preference number: 5 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRPLLLH*CYLGRT
Trigger: TGTCCTCCCTAGGTAACACAAATGGAGAAGAAGTGG...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS GCA 90 bp CTTTGGTTCTCCAACCTTGAGGATGAGATAGGGGATAAAGGACGATaGTTCATTCTCAGTAAGATGATACTCTTCCTCACTCAGCAGGGT +
Preference number: 5 (lower is better)
Translates to: LWFSNLEDEIGDKGR*FILSKMILFLTQQG
Trigger: ACCCTGCTGAGTGAGGAAGAGTATCATCTTACTGAGAATGAAGCATCGTCCTTTATCCCCTATCTCATCCTCAAGGTTGGAGAACCAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTCATACCCACTTAATCTaGCTTTCCATAGCTTGTGTT +
Preference number: 5 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTHTHLI*LSIACV
Trigger: AACACAAGCTATGGAAAGCAAGATTAAGTGGGTATG...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACATACCCACTTAATCTaGCTTTCCATAGCTTGTGTT +
Preference number: 5 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLHTHLI*LSIACV
Trigger: AACACAAGCTATGGAAAGCAAGATTAAGTGGGTATG...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACATGATCTTGGGGTTCTaGTTATCCAGGCCCTTCAGA +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYMILGF*LSRPFR
Trigger: TCTGAAGGGCCTGGATAACAAGAACCCCAAGATCAT...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGCAGGGCTTGTACCACTaGAGGCTTCTTTTCTTTGAA +
Preference number: 5 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKQGLYH*RLLFFE
Trigger: TTCAAAGAAAAGAAGCCTCAAGTGGTACAAGCCCTG...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAGTGATGTCTGCTGCTaGATGGTGGGATTTTTATTA +
Preference number: 5 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTSDVCC*MVGFLL
Trigger: TAATAAAAATCCCACCATCAAGCAGCAGACATCACT...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACGTCCTGAAACATCTTTaGTGTCTTTGTCCCCTGCAG +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYVLKHL*CLCPLQ
Trigger: CTGCAGGGGACAAAGACACAAAAGATGTTTCAGGAC...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGTCCTGAAACATCTTTaGTGTCTTTGTCCCCTGCAG +
Preference number: 5 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEVLKHL*CLCPLQ
Trigger: CTGCAGGGGACAAAGACACAAAAGATGTTTCAGGAC...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGGGCTCCACTATTTCTTaGGTCTCCAATCCTTTCTTA +
Preference number: 5 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLGSTIS*VSNPFL
Trigger: TAAGAAAGGATTGGAGACCAAAGAAATAGTGGAGCC...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCTTCACATACTTCAATaGAGAGTTCTGGCTCCACTA +
Preference number: 5 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLLHILQ*RVLAPL
Trigger: TAGTGGAGCCAGAACTCTCAATTGAAGTATGTGAAG...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACTTCACATCTCCAATCTaGTCTACAAGGCCATCTAAT +
Preference number: 5 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYFTSPI*STRPSN
Trigger: ATTAGATGGCCTTGTAGACAAGATTGGAGATGTGAA...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACATTCACATCTCCAATCTaGTCTACAAGGCCATCTAAT +
Preference number: 5 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTFTSPI*STRPSN
Trigger: ATTAGATGGCCTTGTAGACAAGATTGGAGATGTGAA...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACTGCACGCTTCAGCTATaGCTGTCATGGCTTCTTTTG +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYCTLQL*LSWLLL
Trigger: CAAAAGAAGCCATGACAGCAATAGCTGAAGCGTGCA...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAATCACAGCAGGATTTGTaGCAGCAAGAGCAGTCTTCA +
Preference number: 5 (lower is better)
Translates to: LSHAMHSYRIQCPFRATESQQDL*QQEQSS
Trigger: TGAAGACTGCTCTTGCTGCAACAAATCCTGCTGTGA...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGAACTCTGAAGTAATTTaGTCACTGATCTCAATCCTC +
Preference number: 5 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRNSEVI*SLISIL
Trigger: GAGGATTGAGATCAGTGACAAAATTACTTCAGAGTT...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAGACCCTTCAAGGCAGTaGGAAGTTCACCTATATTTG +
Preference number: 5 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRDPSRQ*EVHLYL
Trigger: CAAATATAGGTGAACTTCCAACTGCCTTGAAGGGTC...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGGCACCAAGATTTTGTTaGAATCATTCAGTCGACCCT +
Preference number: 5 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLAPRFC*NHSVDP
Trigger: AGGGTCGACTGAATGATTCAAACAAAATCTTGGTGC...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACCATGGCTACTGCCAGTaGCTGAAGGATATTCAGTGT +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYHGYCQ*LKDIQC
Trigger: ACACTGAATATCCTTCAGCAACTGGCAGTAGCCATG...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACACTTTCATTAGAACGCTaGTATTGGTGTCGAAAAACC +
Preference number: 5 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTLSLER*YWCRKT
Trigger: GGTTTTTCGACACCAATACAAGCGTTCTAATGAAAG...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACACTGTTACAATGGTGTaGAGGGCAGCATTCCGTACA +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYTVTMV*RAAFRT
Trigger: TGTACGGAATGCTGCCCTCAACACCATTGTAACAGT...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGAAAATGTCATCAAGTTaGTGCTGGACAAGCTCTGGC +
Preference number: 5 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKKMSSS*CWTSSG
Trigger: GCCAGAGCTTGTCCAGCACAAACTTGATGACATTTT...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAAAATGTCATCAAGTTaGTGCTGGACAAGCTCTGGC +
Preference number: 5 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRKMSSS*CWTSSG
Trigger: GCCAGAGCTTGTCCAGCACAAACTTGATGACATTTT...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGTTGATGATTTCATCCTaGTCCAACTTCTCATCTGCC +
Preference number: 5 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLLMISS*SNFSSA
Trigger: GGCAGATGAGAAGTTGGACAAGGATGAAATCATCAA...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCATACAGCTATACAACTaGATGATTTCATCCTTGTCC +
Preference number: 5 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFIQLYN*MISSLS
Trigger: GGACAAGGATGAAATCATCAAGTTGTATAGCTGTAT...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCAATAGCGAAATCATGTaGCCAATGATACAGCTATAC +
Preference number: 5 (lower is better)
Translates to: CSLIHTTSLCTMACSGRFNSEIM*PMIQLY
Trigger: GTATAGCTGTATCATTGGCAACATGATTTCGCTATT...GAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGGAATAGCGAAATCATGTaGCCAATGATACAGCTATAC +
Preference number: 5 (lower is better)
Translates to: YIQPVCVQWPAAAASHYRNSEIM*PMIQLY
Trigger: GTATAGCTGTATCATTGGCAACATGATTTCGCTATT...CCTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAAGAACGAATCACCTGTaGTCCTTCCTCCAGATCTTC +
Preference number: 5 (lower is better)
Translates to: LSHAMHSYRIQCPFRATERTNHL*SFLQIF
Trigger: GAAGATCTGGAGGAAGGACAACAGGTGATTCGTTCT...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAACAAGCTCTGAGAATTaGGGAGAACTAGCTGTTGCT +
Preference number: 5 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRTSSEN*GELAVA
Trigger: AGCAACAGCTAGTTCTCCCAAATTCTCAGAGCTTGT...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTATCTAGGTTAATGCTGTaGATGGTGTCAGGTAATAGT +
Preference number: 5 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLSRLML*MVSGNS
Trigger: ACTATTACCTGACACCATCAACAGCATTAACCTAGA...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACGTTTCCTTATCAGACTaGCTCCCAGTCTGGTCCATA +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYVSLSD*LPVWSI
Trigger: TATGGACCAGACTGGGAGCAAGTCTGATAAGGAAAC...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CCA 90 bp ATGAGGCAAATCTCTATGCCCAGTTCCTTGGCTTTGGCTTTAGGTTaGTTGAAGACTTTACTTACAACACCTGATACAACCTCTCCCGTT +
Preference number: 5 (lower is better)
Translates to: MRQISMPSSLALALG*LKTLLTTPDTTSPV
Trigger: AACGGGAGAGGTTGTATCAGGTGTTGTAAGTAAAGTCTTCAACCAACCTAAAGCCAAAGCCAAGGAACTGGGCATAGAGATTTGCCTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CCA 90 bp TTGCTCCCAGTCTGGTCCATACTATGCTTCATCATCCGACACAGGTaGGCCTCCAATTCTGACTCATTCTTATTATCAATCATTGTAAGG +
Preference number: 5 (lower is better)
Translates to: LLPVWSILCFIIRHR*ASNSDSFLLSIIVR
Trigger: CCTTACAATGATTGATAATAAGAATGAGTCAGAATTGGAGGCCCACCTGTGTCGGATGATGAAGCATAGTATGGACCAGACTGGGAGCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACTTGGCTTTAGGTTGGTaGAAGACTTTACTTACAACA +
Preference number: 5 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYLALGW*KTLLTT
Trigger: TGTTGTAAGTAAAGTCTTCAACCAACCTAAAGCCAA...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGTTGGCTTTAGGTTGGTaGAAGACTTTACTTACAACA +
Preference number: 5 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQLALGW*KTLLTT
Trigger: TGTTGTAAGTAAAGTCTTCAACCAACCTAAAGCCAA...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAAACATGTCCTGCATATaGTCCAAATTTCTTTCTGAG +
Preference number: 5 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLNMSCI*SKFLSE
Trigger: CTCAGAAAGAAATTTGGACAATATGCAGGACATGTT...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAATTTTTCCAAAATTGTaGGCACAACATGTCCTGCAT +
Preference number: 5 (lower is better)
Translates to: DTYNQFVYNGLQRPLHTTIFPKL*AQHVLH
Trigger: ATGCAGGACATGTTGTGCCAACAATTTTGGAAAAAT...TGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TCTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTATTTTTCCAAAATTGTaGGCACAACATGTCCTGCAT +
Preference number: 5 (lower is better)
Translates to: SDTYNQFVYNGLQRPLHTIFPKL*AQHVLH
Trigger: ATGCAGGACATGTTGTGCCAACAATTTTGGAAAAAT...AGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACCAGGGCTTGTACCACTaGAGGCTTCTTTTCTTTGAA +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYQGLYH*RLLFFE
Trigger: TTCAAAGAAAAGAAGCCTCAAGTGGTACAAGCCCTG...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGACTTCACATACTTCAATaGAGAGTTCTGGCTCCACTA +
Preference number: 5 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRLHILQ*RVLAPL
Trigger: TAGTGGAGCCAGAACTCTCAATTGAAGTATGTGAAG...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAACTCTGAAGTAATTTaGTCACTGATCTCAATCCTC +
Preference number: 5 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYNSEVI*SLISIL
Trigger: GAGGATTGAGATCAGTGACAAAATTACTTCAGAGTT...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGACTGATCTTCCAATTCTaGTCACCAATCTTAGACACC +
Preference number: 5 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRLIFQF*SPILDT
Trigger: GGTGTCTAAGATTGGTGACAAGAATTGGAAGATCAG...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGACCCTTCAAGGCAGTaGGAAGTTCACCTATATTTG +
Preference number: 5 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEDPSRQ*EVHLYL
Trigger: CAAATATAGGTGAACTTCCAACTGCCTTGAAGGGTC...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGTGCTGCACCAAGATTTaGTTTGAATCATTCAGTCGA +
Preference number: 5 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLCCTKI*FESFSR
Trigger: TCGACTGAATGATTCAAACAAAATCTTGGTGCAGCA...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp AGGCACCACTGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACTTAGAGTTTTTGGACTaGGTTCCTTCCATAATGAAG +
Preference number: 5 (lower is better)
Translates to: RHHCSSHLQSDTYNQFVYLEFLD*VPSIMK
Trigger: CTTCATTATGGAAGGAACCAAGTCCAAAAACTCTAA...GTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCAGTGGTGCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp ATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTACAGTTAGAGTTTTTGGACTaGGTTCCTTCCATAATGAAG +
Preference number: 5 (lower is better)
Translates to: IHTTSLCTMACSGRFTLQLEFLD*VPSIMK
Trigger: CTTCATTATGGAAGGAACCAAGTCCAAAAACTCTAA...CTGTAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGACCCTTGCGTAGCATGTaGGCATTAGAGTTTATATTC +
Preference number: 5 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRPLRSM*ALEFIF
Trigger: GAATATAAACTCTAATGCCAACATGCTACGCAAGGG...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGCCCTTGCGTAGCATGTaGGCATTAGAGTTTATATTC +
Preference number: 5 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKPLRSM*ALEFIF
Trigger: GAATATAAACTCTAATGCCAACATGCTACGCAAGGG...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAATCTGTGTCAGAGCTaGGATGCTTGTGTTGATGTC +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYNLCQS*DACVDV
Trigger: GACATCAACACAAGCATCCAAGCTCTGACACAGATT...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp CTGATACATACAACCAGTTTGTGTACAATGGCCTGCAGCGGCCGCTTCACACTAATACAGCTATACAACTaGATGATTTCATCCTTGTCC +
Preference number: 5 (lower is better)
Translates to: LIHTTSLCTMACSGRFTLIQLYN*MISSLS
Trigger: GGACAAGGATGAAATCATCAAGTTGTATAGCTGTAT...TAGTGTGAAGCGGCCGCTGCAGGCCATTGTACACAAACTGGTTGTATGTATCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACACAAGCTCTGAGAATTaGGGAGAACTAGCTGTTGCT +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYTSSEN*GELAVA
Trigger: AGCAACAGCTAGTTCTCCCAAATTCTCAGAGCTTGT...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS TCA 90 bp CAAATTCACTTAAGGCTTTCCTCAGTGTTTCTATACAGGCCACTATaGTCTTGGGGTTCTTGTTATCCAGGCCCTTCAGAAGCTCTTCTT +
Preference number: 5 (lower is better)
Translates to: QIHLRLSSVFLYRPL*SWGSCYPGPSEALL
Trigger: AAGAAGAGCTTCTGAAGGGCCTGGATAACAAGAACCCCAAGATCATAGTGGCCTGTATAGAAACACTGAGGAAAGCCTTAAGTGAATTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGTTGGCTTTAGGTTGGTaGAAGACTTTACTTACAACA +
Preference number: 5 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLLALGW*KTLLTT
Trigger: TGTTGTAAGTAAAGTCTTCAACCAACCTAAAGCCAA...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACGGCTTTGGCTTTAGGTaGGTTGAAGACTTTACTTAC +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYGFGFR*VEDFTY
Trigger: GTAAGTAAAGTCTTCAACCAACCTAAAGCCAAAGCC...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGCTCCTCCCATCTGCAGTCTGATACATACAACCAGTTTGTGTACAATGGCCTGATTTTTCCAAAATTGTaGGCACAACATGTCCTGCAT +
Preference number: 5 (lower is better)
Translates to: CSSHLQSDTYNQFVYNGLIFPKL*AQHVLH
Trigger: ATGCAGGACATGTTGTGCCAACAATTTTGGAAAAAT...CAGGCCATTGTACACAAACTGGTTGTATGTATCAGACTGCAGATGGGAGGAGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGAGTGATGTCTGCTGCTaGATGGTGGGATTTTTATTA +
Preference number: 5 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKSDVCC*MVGFLL
Trigger: TAATAAAAATCCCACCATCAAGCAGCAGACATCACT...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAATCAGGAGCAGAATCATaGATGTGCTTAAGTAGAGCA +
Preference number: 5 (lower is better)
Translates to: LSHAMHSYRIQCPFRATESGAES*MCLSRA
Trigger: TGCTCTACTTAAGCACATCAATGATTCTGCTCCTGA...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAACTGTCATGGCTTCTTTaGCATTGTTCCCACATTTCA +
Preference number: 5 (lower is better)
Translates to: LSHAMHSYRIQCPFRATELSWLL*HCSHIS
Trigger: TGAAATGTGGGAACAATGCAAAAGAAGCCATGACAG...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAAGAGCAGTCTTCACGTaGCTAATGAAAGCTTTGACA +
Preference number: 5 (lower is better)
Translates to: LSHAMHSYRIQCPFRATERAVFT*LMKALT
Trigger: TGTCAAAGCTTTCATTAGCAACGTGAAGACTGCTCT...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGCACCAAGATTTTGTTaGAATCATTCAGTCGACCCT +
Preference number: 5 (lower is better)
Translates to: LSHAMHSYRIQCPFRATEAPRFC*NHSVDP
Trigger: AGGGTCGACTGAATGATTCAAACAAAATCTTGGTGC...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACTTAAGGTGGTTTTGCTaGGCACTTTCTTCCCTTGTA +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYLRWFC*ALSSLV
Trigger: TACAAGGGAAGAAAGTGCCAAGCAAAACCACCTTAA...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGACTTTCATTAGAACGCTaGTATTGGTGTCGAAAAACC +
Preference number: 5 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRLSLER*YWCRKT
Trigger: GGTTTTTCGACACCAATACAAGCGTTCTAATGAAAG...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACCTCTGCTTAGAGTTTTaGGACTTGGTTCCTTCCATA +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYLCLEF*DLVPSI
Trigger: TATGGAAGGAACCAAGTCCAAAAACTCTAAGCAGAG...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACCCCTTGCGTAGCATGTaGGCATTAGAGTTTATATTC +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYPLRSM*ALEFIF
Trigger: GAATATAAACTCTAATGCCAACATGCTACGCAAGGG...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACTTGATGATTTCATCCTaGTCCAACTTCTCATCTGCC +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYLMISS*SNFSSA
Trigger: GGCAGATGAGAAGTTGGACAAGGATGAAATCATCAA...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGTCTAGGTTAATGCTGTaGATGGTGTCAGGTAATAGT +
Preference number: 5 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKSRLML*MVSGNS
Trigger: ACTATTACCTGACACCATCAACAGCATTAACCTAGA...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS TCA 90 bp TTCTTCCGTACATCTCCATTTCGATCTTCTAGACAGGAATACAGATaGGGAACACAAAGGATAAGATCTGTAGGAGTGGAACGGAGTGTA +
Preference number: 5 (lower is better)
Translates to: FFRTSPFRSSRQEYR*GTQRIRSVGVERSV
Trigger: TACACTCCGTTCCACTCCTACAGATCTTATCCTTTGTGTTCCTCATCTGTATTCCTGTCTAGAAGATCGAAATGGAGATGTACGGAAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACCATACCCACTTAATCTaGCTTTCCATAGCTTGTGTT +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYHTHLI*LSIACV
Trigger: AACACAAGCTATGGAAAGCAAGATTAAGTGGGTATG...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGTTGGCTTTAGGTTGGTaGAAGACTTTACTTACAACA +
Preference number: 5 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKLALGW*KTLLTT
Trigger: TGTTGTAAGTAAAGTCTTCAACCAACCTAAAGCCAA...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAGAACATGTCCTGCATATaGTCCAAATTTCTTTCTGAG +
Preference number: 5 (lower is better)
Translates to: CLMPCIHTEYSVPSGLQKNMSCI*SKFLSE
Trigger: CTCAGAAAGAAATTTGGACAATATGCAGGACATGTT...CTTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGTGATGTCTGCTGCTaGATGGTGGGATTTTTATTA +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYSDVCC*MVGFLL
Trigger: TAATAAAAATCCCACCATCAAGCAGCAGACATCACT...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACTTGTCCCTGCATCTTTaGAAATTCTGCATCTATCTG +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYLSLHL*KFCIYL
Trigger: CAGATAGATGCAGAATTTCAAAAGATGCAGGGACAA...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACTGCTGCACCAAGATTTaGTTTGAATCATTCAGTCGA +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYCCTKI*FESFSR
Trigger: TCGACTGAATGATTCAAACAAAATCTTGGTGCAGCA...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACCTTTCATTAGAACGCTaGTATTGGTGTCGAAAAACC +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYLSLER*YWCRKT
Trigger: GGTTTTTCGACACCAATACAAGCGTTCTAATGAAAG...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGATTAGAGTTTTTGGACTaGGTTCCTTCCATAATGAAG +
Preference number: 5 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRLEFLD*VPSIMK
Trigger: CTTCATTATGGAAGGAACCAAGTCCAAAAACTCTAA...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAATACAGCTATACAACTaGATGATTTCATCCTTGTCC +
Preference number: 5 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRIQLYN*MISSLS
Trigger: GGACAAGGATGAAATCATCAAGTTGTATAGCTGTAT...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp GTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAATAGCGAAATCATGTaGCCAATGATACAGCTATAC +
Preference number: 5 (lower is better)
Translates to: VVSCHAFIQNTVSLQGYRNSEIM*PMIQLY
Trigger: GTATAGCTGTATCATTGGCAACATGATTTCGCTATT...TCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111338.10
CDS CCA 90 bp AAGGACAGGTTCAAAAATGTCATCAAGTTTGTGCTGGACAAGCTCTaGCATTTCACAGCGGACTGTACCATTATCATTTTCAATCTCATC +
Preference number: 5 (lower is better)
Translates to: KDRFKNVIKFVLDKL*HFTADCTIIIFNLI
Trigger: GATGAGATTGAAAATGATAATGGTACAGTCCGCTGTGAAATGCCAGAGCTTGTCCAGCACAAACTTGATGACATTTTTGAACCTGTCCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAACATGTCCTGCATATaGTCCAAATTTCTTTCTGAG +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYNMSCI*SKFLSE
Trigger: CTCAGAAAGAAATTTGGACAATATGCAGGACATGTT...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAAAACATGTCCTGCATATaGTCCAAATTTCTTTCTGAG +
Preference number: 5 (lower is better)
Translates to: LSHAMHSYRIQCPFRATENMSCI*SKFLSE
Trigger: CTCAGAAAGAAATTTGGACAATATGCAGGACATGTT...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACATTTTTCCAAAATTGTaGGCACAACATGTCCTGCAT +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYIFPKL*AQHVLH
Trigger: ATGCAGGACATGTTGTGCCAACAATTTTGGAAAAAT...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTAGTTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAACTCTGAAGTAATTTaGTCACTGATCTCAATCCTC +
Preference number: 5 (lower is better)
Translates to: LVVSCHAFIQNTVSLQGYNSEVI*SLISIL
Trigger: GAGGATTGAGATCAGTGACAAAATTACTTCAGAGTT...GTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAACTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS-3UTR CAA 90 bp TTGTCTCATGCCATGCATTCATACAGAATACAGTGTCCCTTCAGGGCTACAGAATTAGAGTTTTTGGACTaGGTTCCTTCCATAATGAAG +
Preference number: 5 (lower is better)
Translates to: LSHAMHSYRIQCPFRATELEFLD*VPSIMK
Trigger: CTTCATTATGGAAGGAACCAAGTCCAAAAACTCTAA...TTCTGTAGCCCTGAAGGGACACTGTATTCTGTATGAATGCATGGCATGAGACAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS TCA 90 bp CATTTCACATCTCCAATCTTGTCTACAAGGCCATCTAATACAATCTaGGCAGACGTTTTAGAAAAATTTCCCTTCTGGGCAATCAAAGCA +
Preference number: 5 (lower is better)
Translates to: HFTSPILSTRPSNTI*ADVLEKFPFWAIKA
Trigger: TGCTTTGATTGCCCAGAAGGGAAATTTTTCTAAAACGTCTGCTCAGATTGTATTAGATGGCCTTGTAGACAAGATTGGAGATGTGAAATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CCA 72 bp GCAGAGTGGGTCTGGTTGGAATCCAGGTCTGAGTGCTaGTGCTGTTCCCGGGACTCCCGGAGCTGTGAGAGC +
Preference number: 6 (lower is better)
Translates to: AEWVWLESRSEC*CCSRDSRSCES
Trigger: GCTCTCACAGCTCCGGGAGTCCCGGGAACAGCACCAGCACTCAGACCTGGATTCCAACCAGACCCACTCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CAA 90 bp GTTGTGGAGGAGGAGGAGGTCATGGTTCCTGCAGAGTGGGTCTGGTaGGAATCCAGGTCTGAGTGCTGGTGCTGTTCCCGGGACTCCCGG +
Preference number: 6 (lower is better)
Translates to: VVEEEEVMVPAEWVW*ESRSECWCCSRDSR
Trigger: CCGGGAGTCCCGGGAACAGCACCAGCACTCAGACCTGGATTCCAACCAGACCCACTCTGCAGGAACCATGACCTCCTCCTCCTCCACAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS GCA 72 bp GAGTGGGTCTGGTTGGAATCCAGGTCTGAGTGCTGGTaGTGTTCCCGGGACTCCCGGAGCTGTGAGAGCTTG +
Preference number: 6 (lower is better)
Translates to: EWVWLESRSECW*CSRDSRSCESL
Trigger: CAAGCTCTCACAGCTCCGGGAGTCCCGGGAACAGCACCAGCACTCAGACCTGGATTCCAACCAGACCCACTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CCA 72 bp AGGAGGAGGTCATGGTTCCTGCAGAGTGGGTCTGGTTaGAATCCAGGTCTGAGTGCTGGTGCTGTTCCCGGG +
Preference number: 6 (lower is better)
Translates to: RRRSWFLQSGSG*NPGLSAGAVPG
Trigger: CCCGGGAACAGCACCAGCACTCAGACCTGGATTCCAACCAGACCCACTCTGCAGGAACCATGACCTCCTCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CAA 72 bp TGGTGCTGTTCCCGGGACTCCCGGAGCTGTGAGAGCTaGCTATGGAGCATGTCTGTGGAGGAGGCAACTGGA +
Preference number: 6 (lower is better)
Translates to: WCCSRDSRSCES*LWSMSVEEATG
Trigger: TCCAGTTGCCTCCTCCACAGACATGCTCCATAGCAAGCTCTCACAGCTCCGGGAGTCCCGGGAACAGCACCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CAA 72 bp GAGGAGGAGGTCATGGTTCCTGCAGAGTGGGTCTGGTaGGAATCCAGGTCTGAGTGCTGGTGCTGTTCCCGG +
Preference number: 6 (lower is better)
Translates to: EEEVMVPAEWVW*ESRSECWCCSR
Trigger: CCGGGAACAGCACCAGCACTCAGACCTGGATTCCAACCAGACCCACTCTGCAGGAACCATGACCTCCTCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CAA 90 bp TCTGAGTGCTGGTGCTGTTCCCGGGACTCCCGGAGCTGTGAGAGCTaGCTATGGAGCATGTCTGTGGAGGAGGCAACTGGAGGAATTGCT +
Preference number: 6 (lower is better)
Translates to: SECWCCSRDSRSCES*LWSMSVEEATGGIA
Trigger: AGCAATTCCTCCAGTTGCCTCCTCCACAGACATGCTCCATAGCAAGCTCTCACAGCTCCGGGAGTCCCGGGAACAGCACCAGCACTCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CCA 72 bp GAGGAGGAGGAGGTCATGGTTCCTGCAGAGTGGGTCTaGTTGGAATCCAGGTCTGAGTGCTGGTGCTGTTCC +
Preference number: 6 (lower is better)
Translates to: EEEEVMVPAEWV*LESRSECWCCS
Trigger: GGAACAGCACCAGCACTCAGACCTGGATTCCAACCAGACCCACTCTGCAGGAACCATGACCTCCTCCTCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS TCA 72 bp GTGCTTGTGGGGGTGGGCACACATGTGACCTCCATCTaGGGGGAAATGCCTGTTGAAGTAGGAATCCGGCCT +
Preference number: 6 (lower is better)
Translates to: VLVGVGTHVTSI*GEMPVEVGIRP
Trigger: AGGCCGGATTCCTACTTCAACAGGCATTTCCCCTCAGATGGAGGTCACATGTGTGCCCACCCCCACAAGCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CCA 72 bp TATAGGCTGGGTTTTGGCTGGAGCCGACCCTCCCATTaGTTTGGACATGGCCTTAGCAGGTGCAGCAGGCTT +
Preference number: 6 (lower is better)
Translates to: YRLGFGWSRPSH*FGHGLSRCSRL
Trigger: AAGCCTGCTGCACCTGCTAAGGCCATGTCCAAACCAATGGGAGGGTCGGCTCCAGCCAAAACCCAGCCTATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CCA 72 bp TGTTCCCGGGACTCCCGGAGCTGTGAGAGCTTGCTATaGAGCATGTCTGTGGAGGAGGCAACTGGAGGAATT +
Preference number: 6 (lower is better)
Translates to: CSRDSRSCESLL*SMSVEEATGGI
Trigger: AATTCCTCCAGTTGCCTCCTCCACAGACATGCTCCATAGCAAGCTCTCACAGCTCCGGGAGTCCCGGGAACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS TCA 72 bp GGCCTGTTTCACAGGTGCAGCAGAGGGTCTCTTTGCTaGCCGCTTTATCCTCTCCTCAAGCATGCTCATGTC +
Preference number: 6 (lower is better)
Translates to: GLFHRCSRGSLC*PLYPLLKHAHV
Trigger: GACATGAGCATGCTTGAGGAGAGGATAAAGCGGTCAGCAAAGAGACCCTCTGCTGCACCTGTGAAACAGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CCA 72 bp ATCTTCAACAGGTGCTGGTATAGGCTGGGTTTTGGCTaGAGCCGACCCTCCCATTGGTTTGGACATGGCCTT +
Preference number: 6 (lower is better)
Translates to: IFNRCWYRLGFG*SRPSHWFGHGL
Trigger: AAGGCCATGTCCAAACCAATGGGAGGGTCGGCTCCAGCCAAAACCCAGCCTATACCAGCACCTGTTGAAGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CCA 72 bp TCATCTAAATCCAGCTGGAATTCTCGGCGAACCATCTaGGCTGCTTCAGGATGCCCACTCAGGCTTCGAGCT +
Preference number: 6 (lower is better)
Translates to: SSKSSWNSRRTI*AASGCPLRLRA
Trigger: AGCTCGAAGCCTGAGTGGGCATCCTGAAGCAGCCCAGATGGTTCGCCGAGAATTCCAGCTGGATTTAGATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CCA 72 bp TGTCTGTGGAGGAGGCAACTGGAGGAATTGCTGGTTTaGAGAGCAAAGAGGTCAGTGGAGGCCGGTCATCTT +
Preference number: 6 (lower is better)
Translates to: CLWRRQLEELLV*RAKRSVEAGHL
Trigger: AAGATGACCGGCCTCCACTGACCTCTTTGCTCTCCAAACCAGCAATTCCTCCAGTTGCCTCCTCCACAGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CAA 72 bp CTTCGGCCTGTTTCACAGGTGCAGCAGAGGGTCTCTTaGCTGACCGCTTTATCCTCTCCTCAAGCATGCTCA +
Preference number: 6 (lower is better)
Translates to: LRPVSQVQQRVS*LTALSSPQACS
Trigger: TGAGCATGCTTGAGGAGAGGATAAAGCGGTCAGCAAAGAGACCCTCTGCTGCACCTGTGAAACAGGCCGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CAA 72 bp ATGTCTGTGGAGGAGGCAACTGGAGGAATTGCTGGTTaGGAGAGCAAAGAGGTCAGTGGAGGCCGGTCATCT +
Preference number: 6 (lower is better)
Translates to: MSVEEATGGIAG*ESKEVSGGRSS
Trigger: AGATGACCGGCCTCCACTGACCTCTTTGCTCTCCAAACCAGCAATTCCTCCAGTTGCCTCCTCCACAGACAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CAA 90 bp GACCCTCCCATTGGTTTGGACATGGCCTTAGCAGGTGCAGCAGGCTaGGATGGCATGTTAGCTTTGGCCTTTTCTAGCATGGCCAGTACT +
Preference number: 6 (lower is better)
Translates to: DPPIGLDMALAGAAG*DGMLALAFSSMAST
Trigger: AGTACTGGCCATGCTAGAAAAGGCCAAAGCTAACATGCCATCCAAGCCTGCTGCACCTGCTAAGGCCATGTCCAAACCAATGGGAGGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CAA 90 bp CTATGGAGCATGTCTGTGGAGGAGGCAACTGGAGGAATTGCTGGTTaGGAGAGCAAAGAGGTCAGTGGAGGCCGGTCATCTTGCTTTGTG +
Preference number: 6 (lower is better)
Translates to: LWSMSVEEATGGIAG*ESKEVSGGRSSCFV
Trigger: CACAAAGCAAGATGACCGGCCTCCACTGACCTCTTTGCTCTCCAAACCAGCAATTCCTCCAGTTGCCTCCTCCACAGACATGCTCCATAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS GCA 72 bp CCATTGACATCACCTGCTCAGCTGTCCAGGGCAGCATaGACGCTTCAGCTATTGCTGTCATGGCTTCTTTTG +
Preference number: 6 (lower is better)
Translates to: PLTSPAQLSRAA*TLQLLLSWLLL
Trigger: CAAAAGAAGCCATGACAGCAATAGCTGAAGCGTGCATGCTGCCCTGGACAGCTGAGCAGGTGATGTCAATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CCA 72 bp CTGGAAACAGAATCTTCAACAGGTGCTGGTATAGGCTaGGTTTTGGCTGGAGCCGACCCTCCCATTGGTTTG +
Preference number: 6 (lower is better)
Translates to: LETESSTGAGIG*VLAGADPPIGL
Trigger: CAAACCAATGGGAGGGTCGGCTCCAGCCAAAACCCAGCCTATACCAGCACCTGTTGAAGATTCTGTTTCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CAA 72 bp ACAGAATCTTCAACAGGTGCTGGTATAGGCTGGGTTTaGGCTGGAGCCGACCCTCCCATTGGTTTGGACATG +
Preference number: 6 (lower is better)
Translates to: TESSTGAGIGWV*AGADPPIGLDM
Trigger: CATGTCCAAACCAATGGGAGGGTCGGCTCCAGCCAAAACCCAGCCTATACCAGCACCTGTTGAAGATTCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CAA 72 bp AGAGCAAAGAGGTCAGTGGAGGCCGGTCATCTTGCTTaGTGTTGTCAAGACCACACCGCTGCCGCAGAATTT +
Preference number: 6 (lower is better)
Translates to: RAKRSVEAGHLA*CCQDHTAAAEF
Trigger: AAATTCTGCGGCAGCGGTGTGGTCTTGACAACACAAAGCAAGATGACCGGCCTCCACTGACCTCTTTGCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CAA 90 bp GTACTGGAAACAGAATCTTCAACAGGTGCTGGTATAGGCTGGGTTTaGGCTGGAGCCGACCCTCCCATTGGTTTGGACATGGCCTTAGCA +
Preference number: 6 (lower is better)
Translates to: VLETESSTGAGIGWV*AGADPPIGLDMALA
Trigger: TGCTAAGGCCATGTCCAAACCAATGGGAGGGTCGGCTCCAGCCAAAACCCAGCCTATACCAGCACCTGTTGAAGATTCTGTTTCCAGTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CAA 90 bp TGTTCTGCCCAAGCATTCACAGTTGCTAGGGCAGCAGCTCGAACATaGTTCTTGCTATCTCCGAGAACAGTAATGACAGGGATGCCCAGG +
Preference number: 6 (lower is better)
Translates to: CSAQAFTVARAAART*FLLSPRTVMTGMPR
Trigger: CCTGGGCATCCCTGTCATTACTGTTCTCGGAGATAGCAAGAACAATGTTCGAGCTGCTGCCCTAGCAACTGTGAATGCTTGGGCAGAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CAA 90 bp GAGGTTTCTCTTCGGCCTGTTTCACAGGTGCAGCAGAGGGTCTCTTaGCTGACCGCTTTATCCTCTCCTCAAGCATGCTCATGTCTTTCT +
Preference number: 6 (lower is better)
Translates to: EVSLRPVSQVQQRVS*LTALSSPQACSCLS
Trigger: AGAAAGACATGAGCATGCTTGAGGAGAGGATAAAGCGGTCAGCAAAGAGACCCTCTGCTGCACCTGTGAAACAGGCCGAAGAGAAACCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CAA 90 bp CTGGTTTGGAGAGCAAAGAGGTCAGTGGAGGCCGGTCATCTTGCTTaGTGTTGTCAAGACCACACCGCTGCCGCAGAATTTTTAGCCTTT +
Preference number: 6 (lower is better)
Translates to: LVWRAKRSVEAGHLA*CCQDHTAAAEFLAF
Trigger: AAAGGCTAAAAATTCTGCGGCAGCGGTGTGGTCTTGACAACACAAAGCAAGATGACCGGCCTCCACTGACCTCTTTGCTCTCCAAACCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS TCA 72 bp GCCAGCCTTTCCTTCCAGTTGCTGCTGTCTAGAAGCTaGATACAGGTTGGGGGAAGAACAGCTGAAGCTTTC +
Preference number: 6 (lower is better)
Translates to: ASLSFQLLLSRS*IQVGGRTAEAF
Trigger: GAAAGCTTCAGCTGTTCTTCCCCCAACCTGTATTCAGCTTCTAGACAGCAGCAACTGGAAGGAAAGGCTGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS GCA 72 bp TTAGGATTCTTTTGTGAGAAGGCCATTGACATCACCTaGTCAGCTGTCCAGGGCAGCATGCACGCTTCAGCT +
Preference number: 6 (lower is better)
Translates to: LGFFCEKAIDIT*SAVQGSMHASA
Trigger: AGCTGAAGCGTGCATGCTGCCCTGGACAGCTGAGCAGGTGATGTCAATGGCCTTCTCACAAAAGAATCCTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS GCA 72 bp ACAGTAATGACAGGGATGCCCAGGTTCTTTACATGCTaGCTGATGTTTGCACCCATGGCTACTGCCAGTTGC +
Preference number: 6 (lower is better)
Translates to: TVMTGMPRFFTC*LMFAPMATASC
Trigger: GCAACTGGCAGTAGCCATGGGTGCAAACATCAGGCAGCATGTAAAGAACCTGGGCATCCCTGTCATTACTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS GCA 72 bp AGCTTCTATGGTACTGGAAACAGAATCTTCAACAGGTaGTGGTATAGGCTGGGTTTTGGCTGGAGCCGACCC +
Preference number: 6 (lower is better)
Translates to: SFYGTGNRIFNR*WYRLGFGWSRP
Trigger: GGGTCGGCTCCAGCCAAAACCCAGCCTATACCAGCACCTGTTGAAGATTCTGTTTCCAGTACCATAGAAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CCA 72 bp TTCTATGGTACTGGAAACAGAATCTTCAACAGGTGCTaGTATAGGCTGGGTTTTGGCTGGAGCCGACCCTCC +
Preference number: 6 (lower is better)
Translates to: FYGTGNRIFNRC*YRLGFGWSRPS
Trigger: GGAGGGTCGGCTCCAGCCAAAACCCAGCCTATACCAGCACCTGTTGAAGATTCTGTTTCCAGTACCATAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000046769.16
ENSMUST00000099716.11
ENSMUST00000111337.3
ENSMUST00000111338.10
CDS CCA 72 bp GGTTCCTTCCATAATGAAGGGGAACATTTTGCTGGCTaGGTAGACAAGGCACATCCGGTTCAGGATAGCACG +